####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS152_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS152_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 2 - 24 4.94 12.13 LCS_AVERAGE: 49.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 4 - 15 1.81 16.76 LCS_AVERAGE: 21.65 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 6 - 14 0.71 17.99 LONGEST_CONTINUOUS_SEGMENT: 9 7 - 15 0.89 18.39 LCS_AVERAGE: 14.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 7 11 18 3 4 7 9 10 11 12 13 14 15 18 18 18 19 20 28 28 29 29 30 LCS_GDT Q 2 Q 2 7 11 23 3 6 7 9 10 11 12 13 14 15 20 23 24 25 26 28 28 29 29 30 LCS_GDT E 3 E 3 7 11 23 5 6 7 9 10 11 13 13 14 15 18 18 24 25 26 28 28 29 29 30 LCS_GDT T 4 T 4 7 12 23 5 6 7 9 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT R 5 R 5 7 12 23 5 6 7 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 6 K 6 9 12 23 5 7 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 7 K 7 9 12 23 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT C 8 C 8 9 12 23 5 8 9 10 11 12 13 13 14 16 18 20 22 24 26 28 28 29 29 30 LCS_GDT T 9 T 9 9 12 23 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT E 10 E 10 9 12 23 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT M 11 M 11 9 12 23 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 12 K 12 9 12 23 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 13 K 13 9 12 23 4 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 14 K 14 9 12 23 4 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT F 15 F 15 9 12 23 3 5 7 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT K 16 K 16 4 11 23 2 4 4 5 8 11 12 13 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT N 17 N 17 3 7 23 0 5 5 6 6 8 9 10 14 16 20 23 23 25 26 28 28 29 29 30 LCS_GDT C 18 C 18 5 7 23 1 5 5 6 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT E 19 E 19 5 7 23 3 5 5 6 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT V 20 V 20 5 7 23 3 5 5 6 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT R 21 R 21 5 7 23 3 5 5 6 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT C 22 C 22 5 7 23 3 5 5 6 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT D 23 D 23 3 7 23 3 3 3 4 6 8 9 10 14 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT E 24 E 24 3 6 23 3 3 3 4 5 6 8 9 11 15 20 23 24 25 26 28 28 29 29 30 LCS_GDT S 25 S 25 3 6 22 3 3 3 4 5 6 8 9 9 11 11 13 24 25 26 28 28 29 29 30 LCS_GDT N 26 N 26 5 7 16 3 5 5 6 7 7 8 9 11 12 15 17 19 21 22 28 28 29 29 30 LCS_GDT H 27 H 27 5 7 16 3 5 5 6 7 7 8 9 11 12 15 17 19 21 22 25 28 29 29 30 LCS_GDT C 28 C 28 5 7 16 3 5 5 6 7 8 9 9 10 15 20 23 24 25 26 28 28 29 29 30 LCS_GDT V 29 V 29 5 8 16 3 5 5 6 7 8 9 9 10 16 20 23 24 25 26 28 28 29 29 30 LCS_GDT E 30 E 30 5 8 16 3 5 5 6 7 8 9 9 10 14 20 21 22 24 26 27 27 28 29 30 LCS_GDT V 31 V 31 5 8 16 3 4 5 6 7 8 9 9 10 11 13 16 19 21 21 22 23 26 28 30 LCS_GDT R 32 R 32 5 8 16 3 4 5 6 7 8 9 9 10 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT C 33 C 33 5 8 16 3 4 5 6 7 8 9 9 11 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT S 34 S 34 4 8 16 3 4 4 6 7 8 9 9 11 12 14 17 19 21 21 22 23 26 28 30 LCS_GDT D 35 D 35 4 8 16 3 4 5 6 7 8 9 9 11 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT T 36 T 36 5 8 16 3 4 5 6 7 8 9 9 11 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT K 37 K 37 5 6 16 4 4 5 6 6 8 8 9 11 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT Y 38 Y 38 5 6 16 4 4 5 6 6 8 9 9 11 12 15 17 19 21 21 22 23 26 28 30 LCS_GDT T 39 T 39 5 6 16 4 4 5 6 6 8 9 10 12 13 18 18 19 21 21 22 23 26 28 30 LCS_GDT L 40 L 40 5 6 16 4 4 5 6 6 8 9 10 13 15 18 18 19 21 21 22 23 26 28 30 LCS_GDT C 41 C 41 5 6 16 3 3 5 6 6 8 9 13 13 13 18 18 19 21 21 22 23 26 28 30 LCS_AVERAGE LCS_A: 28.42 ( 14.52 21.65 49.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 8 9 10 11 12 13 13 14 16 20 23 24 25 26 28 28 29 29 30 GDT PERCENT_AT 12.20 19.51 21.95 24.39 26.83 29.27 31.71 31.71 34.15 39.02 48.78 56.10 58.54 60.98 63.41 68.29 68.29 70.73 70.73 73.17 GDT RMS_LOCAL 0.23 0.54 0.71 1.02 1.61 1.81 2.18 2.18 2.63 3.89 4.29 4.71 4.96 5.03 5.13 5.49 5.49 5.66 5.66 5.87 GDT RMS_ALL_AT 17.99 18.18 17.99 18.14 16.78 16.76 16.42 16.42 16.05 11.71 11.87 12.32 12.54 12.50 12.47 12.70 12.70 12.87 12.87 12.79 # Checking swapping # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 7.812 0 0.258 0.691 11.732 1.364 0.909 11.732 LGA Q 2 Q 2 6.504 0 0.271 1.051 11.799 5.000 2.222 11.799 LGA E 3 E 3 4.329 0 0.098 1.454 12.377 17.727 7.879 12.377 LGA T 4 T 4 2.150 0 0.058 0.050 4.512 45.455 29.351 3.810 LGA R 5 R 5 1.869 0 0.073 1.018 6.550 54.545 24.793 6.550 LGA K 6 K 6 1.337 0 0.117 1.231 7.660 63.636 35.556 7.660 LGA K 7 K 7 2.241 0 0.021 0.642 3.766 38.636 32.929 2.457 LGA C 8 C 8 2.022 0 0.042 0.867 2.735 44.545 42.727 2.735 LGA T 9 T 9 0.910 0 0.056 0.374 1.306 77.727 77.143 0.547 LGA E 10 E 10 1.691 0 0.077 0.470 3.656 54.545 41.212 3.656 LGA M 11 M 11 1.583 0 0.084 1.376 8.912 70.909 41.591 8.912 LGA K 12 K 12 0.558 0 0.052 1.012 1.884 77.727 73.333 1.884 LGA K 13 K 13 1.827 0 0.056 0.539 3.084 47.273 46.869 2.809 LGA K 14 K 14 2.252 0 0.023 0.870 8.105 38.636 24.040 8.105 LGA F 15 F 15 3.023 0 0.427 1.445 9.395 17.273 6.777 9.395 LGA K 16 K 16 7.856 0 0.252 1.341 12.285 0.000 0.000 5.858 LGA N 17 N 17 13.540 0 0.626 0.582 16.828 0.000 0.000 16.828 LGA C 18 C 18 14.706 0 0.591 1.076 15.116 0.000 0.000 14.584 LGA E 19 E 19 17.362 0 0.175 1.214 22.043 0.000 0.000 22.043 LGA V 20 V 20 16.510 0 0.152 0.238 17.293 0.000 0.000 16.526 LGA R 21 R 21 17.325 0 0.038 1.211 17.510 0.000 0.000 15.668 LGA C 22 C 22 18.359 0 0.473 0.631 19.715 0.000 0.000 19.257 LGA D 23 D 23 18.760 0 0.591 1.100 23.753 0.000 0.000 23.753 LGA E 24 E 24 19.828 0 0.030 0.951 26.111 0.000 0.000 26.111 LGA S 25 S 25 22.478 0 0.549 0.744 24.756 0.000 0.000 23.096 LGA N 26 N 26 23.923 0 0.220 0.878 24.191 0.000 0.000 20.382 LGA H 27 H 27 20.611 0 0.574 1.052 24.921 0.000 0.000 24.921 LGA C 28 C 28 17.544 0 0.134 0.690 19.703 0.000 0.000 17.272 LGA V 29 V 29 16.650 0 0.201 0.274 17.378 0.000 0.000 15.507 LGA E 30 E 30 20.553 0 0.169 0.809 28.286 0.000 0.000 28.286 LGA V 31 V 31 20.891 0 0.056 0.917 22.863 0.000 0.000 19.842 LGA R 32 R 32 26.794 0 0.133 0.991 34.234 0.000 0.000 33.508 LGA C 33 C 33 29.080 0 0.282 0.946 32.094 0.000 0.000 27.180 LGA S 34 S 34 33.309 0 0.139 0.617 36.297 0.000 0.000 36.297 LGA D 35 D 35 32.690 0 0.611 0.879 34.715 0.000 0.000 32.726 LGA T 36 T 36 26.375 0 0.521 0.802 28.434 0.000 0.000 25.844 LGA K 37 K 37 20.581 0 0.635 1.735 22.529 0.000 0.000 17.418 LGA Y 38 Y 38 16.995 0 0.158 1.397 23.445 0.000 0.000 23.445 LGA T 39 T 39 12.124 0 0.179 0.329 13.572 0.000 0.000 12.363 LGA L 40 L 40 10.765 0 0.512 0.837 12.461 0.000 0.000 12.111 LGA C 41 C 41 10.482 0 0.168 0.727 14.702 0.000 0.000 14.702 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 10.095 10.003 10.775 15.976 11.886 6.031 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 13 2.18 35.976 32.414 0.570 LGA_LOCAL RMSD: 2.180 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.418 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 10.095 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.059681 * X + -0.979094 * Y + 0.194455 * Z + 6.972577 Y_new = -0.987007 * X + -0.028767 * Y + 0.158084 * Z + -6.810043 Z_new = -0.149185 * X + -0.201363 * Y + -0.968089 * Z + 2.117308 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.510403 0.149744 -2.936516 [DEG: -86.5397 8.5797 -168.2500 ] ZXZ: 2.253388 2.888287 -2.503957 [DEG: 129.1096 165.4866 -143.4662 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS152_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS152_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 13 2.18 32.414 10.10 REMARK ---------------------------------------------------------- MOLECULE T0955TS152_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 CB SER 1 8.086 -11.279 0.567 1.00 1.45 C ATOM 2 OG SER 1 8.776 -11.556 1.773 1.00 1.45 O ATOM 4 C SER 1 5.778 -11.925 1.247 1.00 1.45 C ATOM 5 O SER 1 4.601 -12.073 0.897 1.00 1.45 O ATOM 8 N SER 1 6.489 -12.227 -1.102 1.00 1.45 N ATOM 10 CA SER 1 6.938 -12.285 0.319 1.00 1.45 C ATOM 11 N GLN 2 6.168 -11.455 2.436 1.00 1.24 N ATOM 13 CA GLN 2 5.340 -10.964 3.536 1.00 1.24 C ATOM 14 CB GLN 2 6.279 -10.576 4.682 1.00 1.24 C ATOM 15 CG GLN 2 7.002 -11.752 5.355 1.00 1.24 C ATOM 16 CD GLN 2 8.503 -11.768 5.097 1.00 1.24 C ATOM 17 OE1 GLN 2 8.987 -12.515 4.249 1.00 1.24 O ATOM 18 NE2 GLN 2 9.244 -10.949 5.837 1.00 1.24 N ATOM 21 C GLN 2 4.699 -9.678 3.030 1.00 1.24 C ATOM 22 O GLN 2 3.499 -9.445 3.212 1.00 1.24 O ATOM 23 N GLU 3 5.501 -8.980 2.216 1.00 1.05 N ATOM 25 CA GLU 3 5.221 -7.672 1.624 1.00 1.05 C ATOM 26 CB GLU 3 6.483 -7.071 0.954 1.00 1.05 C ATOM 27 CG GLU 3 7.833 -7.289 1.701 1.00 1.05 C ATOM 28 CD GLU 3 8.113 -6.327 2.866 1.00 1.05 C ATOM 29 OE1 GLU 3 7.164 -5.838 3.521 1.00 1.05 O ATOM 30 OE2 GLU 3 9.305 -6.079 3.136 1.00 1.05 O ATOM 31 C GLU 3 3.930 -7.472 0.803 1.00 1.05 C ATOM 32 O GLU 3 3.504 -6.334 0.664 1.00 1.05 O ATOM 33 N THR 4 3.372 -8.518 0.174 1.00 1.51 N ATOM 35 CA THR 4 2.101 -8.384 -0.594 1.00 1.51 C ATOM 36 CB THR 4 1.892 -9.604 -1.570 1.00 1.51 C ATOM 37 OG1 THR 4 0.693 -9.422 -2.336 1.00 1.51 O ATOM 39 CG2 THR 4 1.823 -10.942 -0.808 1.00 1.51 C ATOM 40 C THR 4 0.812 -8.114 0.258 1.00 1.51 C ATOM 41 O THR 4 0.104 -7.132 0.004 1.00 1.51 O ATOM 42 N ARG 5 0.564 -8.943 1.289 1.00 1.76 N ATOM 44 CA ARG 5 -0.595 -8.801 2.213 1.00 1.76 C ATOM 45 CB ARG 5 -0.721 -10.023 3.137 1.00 1.76 C ATOM 46 CG ARG 5 -1.123 -11.315 2.433 1.00 1.76 C ATOM 47 CD ARG 5 -1.225 -12.471 3.417 1.00 1.76 C ATOM 48 NE ARG 5 -1.609 -13.722 2.759 1.00 1.76 N ATOM 50 CZ ARG 5 -1.774 -14.894 3.374 1.00 1.76 C ATOM 51 NH1 ARG 5 -2.125 -15.959 2.667 1.00 1.76 N ATOM 54 NH2 ARG 5 -1.593 -15.014 4.686 1.00 1.76 N ATOM 57 C ARG 5 -0.257 -7.550 3.020 1.00 1.76 C ATOM 58 O ARG 5 -1.098 -6.679 3.290 1.00 1.76 O ATOM 59 N LYS 6 1.041 -7.457 3.297 1.00 1.40 N ATOM 61 CA LYS 6 1.660 -6.345 3.981 1.00 1.40 C ATOM 62 CB LYS 6 3.083 -6.652 4.485 1.00 1.40 C ATOM 63 CG LYS 6 3.138 -7.593 5.713 1.00 1.40 C ATOM 64 CD LYS 6 3.285 -6.861 7.065 1.00 1.40 C ATOM 65 CE LYS 6 2.682 -7.667 8.215 1.00 1.40 C ATOM 66 NZ LYS 6 3.396 -8.944 8.504 1.00 1.40 N ATOM 70 C LYS 6 1.583 -5.091 3.105 1.00 1.40 C ATOM 71 O LYS 6 1.628 -4.017 3.645 1.00 1.40 O ATOM 72 N LYS 7 1.385 -5.224 1.776 1.00 1.32 N ATOM 74 CA LYS 7 1.361 -4.075 0.816 1.00 1.32 C ATOM 75 CB LYS 7 0.840 -4.503 -0.562 1.00 1.32 C ATOM 76 CG LYS 7 1.679 -4.021 -1.748 1.00 1.32 C ATOM 77 CD LYS 7 1.084 -4.483 -3.074 1.00 1.32 C ATOM 78 CE LYS 7 1.894 -3.991 -4.272 1.00 1.32 C ATOM 79 NZ LYS 7 3.242 -4.624 -4.384 1.00 1.32 N ATOM 83 C LYS 7 0.533 -2.909 1.372 1.00 1.32 C ATOM 84 O LYS 7 0.836 -1.742 1.087 1.00 1.32 O ATOM 85 N CYS 8 -0.504 -3.232 2.153 1.00 1.37 N ATOM 87 CA CYS 8 -1.309 -2.211 2.846 1.00 1.37 C ATOM 88 CB CYS 8 -2.563 -2.851 3.453 1.00 1.37 C ATOM 89 SG CYS 8 -3.655 -3.640 2.248 1.00 1.37 S ATOM 90 C CYS 8 -0.408 -1.614 3.965 1.00 1.37 C ATOM 91 O CYS 8 -0.208 -0.391 4.032 1.00 1.37 O ATOM 92 N THR 9 0.213 -2.511 4.751 1.00 1.53 N ATOM 94 CA THR 9 1.146 -2.189 5.859 1.00 1.53 C ATOM 95 CB THR 9 1.437 -3.444 6.754 1.00 1.53 C ATOM 96 OG1 THR 9 0.461 -4.461 6.490 1.00 1.53 O ATOM 98 CG2 THR 9 1.361 -3.078 8.240 1.00 1.53 C ATOM 99 C THR 9 2.477 -1.620 5.298 1.00 1.53 C ATOM 100 O THR 9 3.099 -0.760 5.924 1.00 1.53 O ATOM 101 N GLU 10 2.884 -2.127 4.121 1.00 1.44 N ATOM 103 CA GLU 10 4.113 -1.760 3.385 1.00 1.44 C ATOM 104 CB GLU 10 4.421 -2.782 2.264 1.00 1.44 C ATOM 105 CG GLU 10 5.798 -2.636 1.570 1.00 1.44 C ATOM 106 CD GLU 10 5.958 -3.486 0.312 1.00 1.44 C ATOM 107 OE1 GLU 10 7.049 -4.067 0.138 1.00 1.44 O ATOM 108 OE2 GLU 10 5.022 -3.551 -0.517 1.00 1.44 O ATOM 109 C GLU 10 4.074 -0.314 2.852 1.00 1.44 C ATOM 110 O GLU 10 5.128 0.304 2.734 1.00 1.44 O ATOM 111 N MET 11 2.887 0.174 2.461 1.00 1.30 N ATOM 113 CA MET 11 2.693 1.558 1.971 1.00 1.30 C ATOM 114 CG MET 11 1.092 2.772 0.325 1.00 1.30 C ATOM 115 SD MET 11 -0.613 2.926 -0.250 1.00 1.30 S ATOM 116 CE MET 11 -1.136 4.424 0.598 1.00 1.30 C ATOM 117 C MET 11 2.960 2.475 3.190 1.00 1.30 C ATOM 118 O MET 11 3.611 3.526 3.066 1.00 1.30 O ATOM 119 CB MET 11 1.259 1.731 1.442 1.00 1.30 C ATOM 120 N LYS 12 2.501 2.008 4.363 1.00 1.55 N ATOM 122 CA LYS 12 2.686 2.682 5.662 1.00 1.55 C ATOM 123 CB LYS 12 1.844 2.010 6.755 1.00 1.55 C ATOM 124 CG LYS 12 0.337 2.191 6.603 1.00 1.55 C ATOM 125 CD LYS 12 -0.421 1.494 7.727 1.00 1.55 C ATOM 126 CE LYS 12 -1.933 1.663 7.594 1.00 1.55 C ATOM 127 NZ LYS 12 -2.517 0.933 6.428 1.00 1.55 N ATOM 131 C LYS 12 4.184 2.616 6.026 1.00 1.55 C ATOM 132 O LYS 12 4.746 3.594 6.527 1.00 1.55 O ATOM 133 N LYS 13 4.799 1.451 5.757 1.00 1.91 N ATOM 135 CA LYS 13 6.233 1.154 5.975 1.00 1.91 C ATOM 136 CB LYS 13 6.513 -0.356 5.887 1.00 1.91 C ATOM 137 CG LYS 13 6.057 -1.155 7.096 1.00 1.91 C ATOM 138 CD LYS 13 6.348 -2.636 6.909 1.00 1.91 C ATOM 139 CE LYS 13 5.962 -3.458 8.131 1.00 1.91 C ATOM 140 NZ LYS 13 4.490 -3.544 8.357 1.00 1.91 N ATOM 144 C LYS 13 7.152 1.907 4.997 1.00 1.91 C ATOM 145 O LYS 13 8.232 2.332 5.385 1.00 1.91 O ATOM 146 N LYS 14 6.681 2.088 3.750 1.00 1.91 N ATOM 148 CA LYS 14 7.388 2.771 2.640 1.00 1.91 C ATOM 149 CB LYS 14 6.520 2.771 1.369 1.00 1.91 C ATOM 150 CG LYS 14 7.287 2.603 0.053 1.00 1.91 C ATOM 151 CD LYS 14 6.345 2.615 -1.141 1.00 1.91 C ATOM 152 CE LYS 14 7.106 2.449 -2.447 1.00 1.91 C ATOM 153 NZ LYS 14 6.196 2.459 -3.625 1.00 1.91 N ATOM 157 C LYS 14 7.732 4.208 3.068 1.00 1.91 C ATOM 158 O LYS 14 8.751 4.764 2.638 1.00 1.91 O ATOM 159 N PHE 15 6.842 4.789 3.885 1.00 1.82 N ATOM 161 CA PHE 15 6.989 6.136 4.467 1.00 1.82 C ATOM 162 CB PHE 15 5.754 6.477 5.345 1.00 1.82 C ATOM 163 CG PHE 15 5.506 7.975 5.560 1.00 1.82 C ATOM 164 CD1 PHE 15 6.073 8.651 6.668 1.00 1.82 C ATOM 165 CD2 PHE 15 4.674 8.706 4.678 1.00 1.82 C ATOM 166 CE1 PHE 15 5.817 10.032 6.895 1.00 1.82 C ATOM 167 CE2 PHE 15 4.408 10.086 4.892 1.00 1.82 C ATOM 168 CZ PHE 15 4.982 10.751 6.004 1.00 1.82 C ATOM 169 C PHE 15 8.286 6.160 5.315 1.00 1.82 C ATOM 170 O PHE 15 8.971 7.185 5.364 1.00 1.82 O ATOM 171 N LYS 16 8.591 5.023 5.963 1.00 2.25 N ATOM 173 CA LYS 16 9.788 4.827 6.813 1.00 2.25 C ATOM 174 CB LYS 16 9.391 4.235 8.177 1.00 2.25 C ATOM 175 CG LYS 16 8.603 5.179 9.079 1.00 2.25 C ATOM 176 CD LYS 16 8.253 4.516 10.401 1.00 2.25 C ATOM 177 CE LYS 16 7.467 5.457 11.300 1.00 2.25 C ATOM 178 NZ LYS 16 7.117 4.821 12.600 1.00 2.25 N ATOM 182 C LYS 16 10.855 3.932 6.132 1.00 2.25 C ATOM 183 O LYS 16 11.928 4.428 5.767 1.00 2.25 O ATOM 184 N ASN 17 10.548 2.633 5.972 1.00 2.38 N ATOM 186 CA ASN 17 11.415 1.609 5.340 1.00 2.38 C ATOM 187 CB ASN 17 11.014 0.197 5.828 1.00 2.38 C ATOM 188 CG ASN 17 11.279 -0.014 7.315 1.00 2.38 C ATOM 189 OD1 ASN 17 12.369 -0.435 7.711 1.00 2.38 O ATOM 190 ND2 ASN 17 10.276 0.266 8.142 1.00 2.38 N ATOM 193 C ASN 17 11.337 1.660 3.798 1.00 2.38 C ATOM 194 O ASN 17 10.632 2.514 3.248 1.00 2.38 O ATOM 195 N CYS 18 12.078 0.767 3.126 1.00 3.12 N ATOM 197 CA CYS 18 12.117 0.651 1.656 1.00 3.12 C ATOM 198 CB CYS 18 13.562 0.498 1.173 1.00 3.12 C ATOM 199 SG CYS 18 13.781 0.554 -0.626 1.00 3.12 S ATOM 200 C CYS 18 11.323 -0.595 1.250 1.00 3.12 C ATOM 201 O CYS 18 10.543 -0.558 0.292 1.00 3.12 O ATOM 202 N GLU 19 11.530 -1.680 2.016 1.00 2.52 N ATOM 204 CA GLU 19 10.916 -3.022 1.860 1.00 2.52 C ATOM 205 CB GLU 19 9.435 -3.044 2.326 1.00 2.52 C ATOM 206 CG GLU 19 9.146 -2.500 3.750 1.00 2.52 C ATOM 207 CD GLU 19 9.416 -3.501 4.875 1.00 2.52 C ATOM 208 OE1 GLU 19 10.539 -3.492 5.422 1.00 2.52 O ATOM 209 OE2 GLU 19 8.507 -4.287 5.204 1.00 2.52 O ATOM 210 C GLU 19 11.057 -3.660 0.465 1.00 2.52 C ATOM 211 O GLU 19 10.704 -3.048 -0.553 1.00 2.52 O ATOM 212 N VAL 20 11.585 -4.891 0.449 1.00 2.61 N ATOM 214 CA VAL 20 11.817 -5.699 -0.764 1.00 2.61 C ATOM 215 CB VAL 20 13.332 -6.153 -0.893 1.00 2.61 C ATOM 216 CG1 VAL 20 13.624 -6.741 -2.282 1.00 2.61 C ATOM 217 CG2 VAL 20 14.277 -4.981 -0.625 1.00 2.61 C ATOM 218 C VAL 20 10.917 -6.934 -0.587 1.00 2.61 C ATOM 219 O VAL 20 10.791 -7.447 0.536 1.00 2.61 O ATOM 220 N ARG 21 10.296 -7.396 -1.680 1.00 4.21 N ATOM 222 CA ARG 21 9.416 -8.571 -1.631 1.00 4.21 C ATOM 223 CB ARG 21 8.060 -8.206 -2.293 1.00 4.21 C ATOM 224 CG ARG 21 6.865 -9.141 -2.041 1.00 4.21 C ATOM 225 CD ARG 21 5.528 -8.489 -2.390 1.00 4.21 C ATOM 226 NE ARG 21 5.335 -8.257 -3.823 1.00 4.21 N ATOM 228 CZ ARG 21 4.254 -7.697 -4.368 1.00 4.21 C ATOM 229 NH1 ARG 21 4.192 -7.539 -5.683 1.00 4.21 N ATOM 232 NH2 ARG 21 3.235 -7.293 -3.616 1.00 4.21 N ATOM 235 C ARG 21 10.131 -9.745 -2.347 1.00 4.21 C ATOM 236 O ARG 21 10.455 -9.664 -3.539 1.00 4.21 O ATOM 237 N CYS 22 10.411 -10.800 -1.568 1.00 2.98 N ATOM 239 CA CYS 22 11.061 -12.043 -2.020 1.00 2.98 C ATOM 240 CB CYS 22 12.556 -12.058 -1.645 1.00 2.98 C ATOM 241 SG CYS 22 12.920 -11.742 0.094 1.00 2.98 S ATOM 242 C CYS 22 10.325 -13.270 -1.453 1.00 2.98 C ATOM 243 O CYS 22 9.529 -13.901 -2.158 1.00 2.98 O ATOM 244 N ASP 23 10.610 -13.586 -0.177 1.00 2.90 N ATOM 246 CA ASP 23 10.035 -14.707 0.601 1.00 2.90 C ATOM 247 CB ASP 23 10.530 -16.090 0.104 1.00 2.90 C ATOM 248 CG ASP 23 12.044 -16.142 -0.149 1.00 2.90 C ATOM 249 OD1 ASP 23 12.472 -15.853 -1.288 1.00 2.90 O ATOM 250 OD2 ASP 23 12.797 -16.484 0.789 1.00 2.90 O ATOM 251 C ASP 23 10.322 -14.546 2.106 1.00 2.90 C ATOM 252 O ASP 23 9.455 -14.841 2.938 1.00 2.90 O ATOM 253 N GLU 24 11.539 -14.082 2.430 1.00 3.23 N ATOM 255 CA GLU 24 12.010 -13.862 3.813 1.00 3.23 C ATOM 256 CB GLU 24 13.376 -14.534 4.032 1.00 3.23 C ATOM 257 CG GLU 24 13.346 -16.060 4.024 1.00 3.23 C ATOM 258 CD GLU 24 14.717 -16.674 4.244 1.00 3.23 C ATOM 259 OE1 GLU 24 15.430 -16.915 3.246 1.00 3.23 O ATOM 260 OE2 GLU 24 15.080 -16.919 5.414 1.00 3.23 O ATOM 261 C GLU 24 12.106 -12.366 4.158 1.00 3.23 C ATOM 262 O GLU 24 12.050 -11.994 5.339 1.00 3.23 O ATOM 263 N SER 25 12.225 -11.524 3.116 1.00 4.01 N ATOM 265 CA SER 25 12.332 -10.038 3.178 1.00 4.01 C ATOM 266 CB SER 25 11.023 -9.401 3.697 1.00 4.01 C ATOM 267 OG SER 25 11.052 -7.986 3.601 1.00 4.01 O ATOM 269 C SER 25 13.567 -9.475 3.925 1.00 4.01 C ATOM 270 O SER 25 14.332 -10.240 4.525 1.00 4.01 O ATOM 271 N ASN 26 13.737 -8.144 3.871 1.00 4.08 N ATOM 273 CA ASN 26 14.852 -7.409 4.501 1.00 4.08 C ATOM 274 CB ASN 26 15.242 -6.195 3.626 1.00 4.08 C ATOM 275 CG ASN 26 14.067 -5.259 3.320 1.00 4.08 C ATOM 276 OD1 ASN 26 13.319 -5.473 2.368 1.00 4.08 O ATOM 277 ND2 ASN 26 13.911 -4.218 4.132 1.00 4.08 N ATOM 280 C ASN 26 14.620 -7.005 5.980 1.00 4.08 C ATOM 281 O ASN 26 15.345 -7.473 6.866 1.00 4.08 O ATOM 282 N HIS 27 13.618 -6.144 6.217 1.00 3.89 N ATOM 284 CA HIS 27 13.219 -5.658 7.551 1.00 3.89 C ATOM 285 CG HIS 27 13.014 -3.456 8.850 1.00 3.89 C ATOM 286 CD2 HIS 27 12.036 -2.897 9.604 1.00 3.89 C ATOM 287 ND1 HIS 27 14.186 -3.283 9.557 1.00 3.89 N ATOM 289 CE1 HIS 27 13.930 -2.647 10.687 1.00 3.89 C ATOM 290 NE2 HIS 27 12.633 -2.402 10.740 1.00 3.89 N ATOM 292 C HIS 27 11.927 -6.448 7.843 1.00 3.89 C ATOM 293 O HIS 27 12.000 -7.536 8.424 1.00 3.89 O ATOM 294 CB HIS 27 12.964 -4.134 7.508 1.00 3.89 C ATOM 295 N CYS 28 10.773 -5.908 7.406 1.00 3.52 N ATOM 297 CA CYS 28 9.430 -6.522 7.506 1.00 3.52 C ATOM 298 CB CYS 28 9.126 -7.357 6.246 1.00 3.52 C ATOM 299 SG CYS 28 7.364 -7.572 5.899 1.00 3.52 S ATOM 300 C CYS 28 8.951 -7.275 8.765 1.00 3.52 C ATOM 301 O CYS 28 9.760 -7.803 9.537 1.00 3.52 O ATOM 302 N VAL 29 7.622 -7.275 8.956 1.00 3.96 N ATOM 304 CA VAL 29 6.919 -7.970 10.053 1.00 3.96 C ATOM 305 CB VAL 29 5.697 -7.142 10.593 1.00 3.96 C ATOM 306 CG1 VAL 29 5.047 -7.839 11.804 1.00 3.96 C ATOM 307 CG2 VAL 29 6.141 -5.742 11.008 1.00 3.96 C ATOM 308 C VAL 29 6.450 -9.190 9.224 1.00 3.96 C ATOM 309 O VAL 29 6.071 -9.031 8.051 1.00 3.96 O ATOM 310 N GLU 30 6.442 -10.384 9.829 1.00 3.96 N ATOM 312 CA GLU 30 6.148 -11.601 9.064 1.00 3.96 C ATOM 313 CB GLU 30 7.294 -12.620 9.218 1.00 3.96 C ATOM 314 CG GLU 30 8.664 -12.148 8.739 1.00 3.96 C ATOM 315 CD GLU 30 9.743 -13.200 8.920 1.00 3.96 C ATOM 316 OE1 GLU 30 10.383 -13.218 9.993 1.00 3.96 O ATOM 317 OE2 GLU 30 9.954 -14.006 7.989 1.00 3.96 O ATOM 318 C GLU 30 4.823 -12.355 9.127 1.00 3.96 C ATOM 319 O GLU 30 4.293 -12.679 10.198 1.00 3.96 O ATOM 320 N VAL 31 4.304 -12.570 7.910 1.00 3.54 N ATOM 322 CA VAL 31 3.087 -13.325 7.561 1.00 3.54 C ATOM 323 CB VAL 31 1.933 -12.403 6.965 1.00 3.54 C ATOM 324 CG1 VAL 31 1.115 -11.812 8.100 1.00 3.54 C ATOM 325 CG2 VAL 31 2.489 -11.256 6.085 1.00 3.54 C ATOM 326 C VAL 31 3.682 -14.264 6.488 1.00 3.54 C ATOM 327 O VAL 31 4.343 -13.777 5.557 1.00 3.54 O ATOM 328 N ARG 32 3.505 -15.585 6.627 1.00 3.12 N ATOM 330 CA ARG 32 4.103 -16.514 5.654 1.00 3.12 C ATOM 331 CB ARG 32 5.041 -17.514 6.354 1.00 3.12 C ATOM 332 CG ARG 32 6.322 -16.900 6.925 1.00 3.12 C ATOM 333 CD ARG 32 7.210 -17.942 7.606 1.00 3.12 C ATOM 334 NE ARG 32 6.633 -18.455 8.852 1.00 3.12 N ATOM 336 CZ ARG 32 7.201 -19.369 9.641 1.00 3.12 C ATOM 337 NH1 ARG 32 6.578 -19.754 10.747 1.00 3.12 N ATOM 340 NH2 ARG 32 8.379 -19.905 9.339 1.00 3.12 N ATOM 343 C ARG 32 3.178 -17.259 4.688 1.00 3.12 C ATOM 344 O ARG 32 2.237 -17.954 5.092 1.00 3.12 O ATOM 345 N CYS 33 3.469 -17.048 3.398 1.00 3.58 N ATOM 347 CA CYS 33 2.803 -17.660 2.240 1.00 3.58 C ATOM 348 CB CYS 33 1.953 -16.621 1.493 1.00 3.58 C ATOM 349 SG CYS 33 0.977 -17.288 0.122 1.00 3.58 S ATOM 350 C CYS 33 3.973 -18.134 1.362 1.00 3.58 C ATOM 351 O CYS 33 3.791 -18.939 0.440 1.00 3.58 O ATOM 352 N SER 34 5.175 -17.628 1.707 1.00 4.62 N ATOM 354 CA SER 34 6.500 -17.855 1.070 1.00 4.62 C ATOM 355 CB SER 34 6.859 -19.355 0.950 1.00 4.62 C ATOM 356 OG SER 34 8.200 -19.547 0.524 1.00 4.62 O ATOM 358 C SER 34 6.702 -17.086 -0.256 1.00 4.62 C ATOM 359 O SER 34 7.077 -15.909 -0.218 1.00 4.62 O ATOM 360 N ASP 35 6.429 -17.728 -1.402 1.00 4.17 N ATOM 362 CA ASP 35 6.573 -17.113 -2.734 1.00 4.17 C ATOM 363 CB ASP 35 7.292 -18.084 -3.694 1.00 4.17 C ATOM 364 CG ASP 35 7.996 -17.373 -4.853 1.00 4.17 C ATOM 365 OD1 ASP 35 9.185 -17.016 -4.705 1.00 4.17 O ATOM 366 OD2 ASP 35 7.363 -17.189 -5.916 1.00 4.17 O ATOM 367 C ASP 35 5.173 -16.716 -3.256 1.00 4.17 C ATOM 368 O ASP 35 4.337 -17.584 -3.546 1.00 4.17 O ATOM 369 N THR 36 4.928 -15.399 -3.315 1.00 4.25 N ATOM 371 CA THR 36 3.649 -14.818 -3.762 1.00 4.25 C ATOM 372 CB THR 36 3.043 -13.874 -2.673 1.00 4.25 C ATOM 373 OG1 THR 36 4.048 -12.965 -2.205 1.00 4.25 O ATOM 375 CG2 THR 36 2.493 -14.671 -1.512 1.00 4.25 C ATOM 376 C THR 36 3.704 -14.079 -5.113 1.00 4.25 C ATOM 377 O THR 36 3.268 -14.630 -6.131 1.00 4.25 O ATOM 378 N LYS 37 4.237 -12.846 -5.110 1.00 4.27 N ATOM 380 CA LYS 37 4.344 -11.979 -6.297 1.00 4.27 C ATOM 381 CB LYS 37 3.418 -10.759 -6.145 1.00 4.27 C ATOM 382 CG LYS 37 1.926 -11.070 -6.230 1.00 4.27 C ATOM 383 CD LYS 37 1.086 -9.808 -6.069 1.00 4.27 C ATOM 384 CE LYS 37 -0.411 -10.097 -6.152 1.00 4.27 C ATOM 385 NZ LYS 37 -0.934 -10.878 -4.991 1.00 4.27 N ATOM 389 C LYS 37 5.777 -11.480 -6.503 1.00 4.27 C ATOM 390 O LYS 37 6.218 -11.305 -7.645 1.00 4.27 O ATOM 391 N TYR 38 6.495 -11.296 -5.381 1.00 4.18 N ATOM 393 CA TYR 38 7.887 -10.787 -5.273 1.00 4.18 C ATOM 394 CB TYR 38 8.955 -11.920 -5.384 1.00 4.18 C ATOM 395 CG TYR 38 8.946 -12.802 -6.645 1.00 4.18 C ATOM 396 CD1 TYR 38 9.671 -12.431 -7.804 1.00 4.18 C ATOM 397 CE1 TYR 38 9.693 -13.260 -8.960 1.00 4.18 C ATOM 398 CD2 TYR 38 8.240 -14.030 -6.673 1.00 4.18 C ATOM 399 CE2 TYR 38 8.255 -14.865 -7.825 1.00 4.18 C ATOM 400 CZ TYR 38 8.982 -14.471 -8.959 1.00 4.18 C ATOM 401 OH TYR 38 8.998 -15.278 -10.074 1.00 4.18 O ATOM 403 C TYR 38 8.270 -9.542 -6.109 1.00 4.18 C ATOM 404 O TYR 38 8.110 -9.526 -7.337 1.00 4.18 O ATOM 405 N THR 39 8.778 -8.521 -5.404 1.00 3.93 N ATOM 407 CA THR 39 9.203 -7.218 -5.949 1.00 3.93 C ATOM 408 CB THR 39 8.247 -6.054 -5.491 1.00 3.93 C ATOM 409 OG1 THR 39 6.915 -6.562 -5.350 1.00 3.93 O ATOM 411 CG2 THR 39 8.218 -4.921 -6.530 1.00 3.93 C ATOM 412 C THR 39 10.630 -6.949 -5.434 1.00 3.93 C ATOM 413 O THR 39 10.971 -7.347 -4.314 1.00 3.93 O ATOM 414 N LEU 40 11.450 -6.283 -6.255 1.00 5.30 N ATOM 416 CA LEU 40 12.839 -5.951 -5.901 1.00 5.30 C ATOM 417 CB LEU 40 13.810 -6.405 -7.033 1.00 5.30 C ATOM 418 CG LEU 40 13.779 -6.250 -8.587 1.00 5.30 C ATOM 419 CD1 LEU 40 12.617 -7.023 -9.233 1.00 5.30 C ATOM 420 CD2 LEU 40 13.796 -4.784 -9.055 1.00 5.30 C ATOM 421 C LEU 40 12.966 -4.444 -5.578 1.00 5.30 C ATOM 422 O LEU 40 14.072 -3.935 -5.349 1.00 5.30 O ATOM 423 N CYS 41 11.795 -3.788 -5.479 1.00 3.69 N ATOM 425 CA CYS 41 11.575 -2.352 -5.160 1.00 3.69 C ATOM 426 CB CYS 41 11.361 -2.159 -3.645 1.00 3.69 C ATOM 427 SG CYS 41 12.771 -2.647 -2.624 1.00 3.69 S ATOM 428 C CYS 41 12.546 -1.293 -5.709 1.00 3.69 C ATOM 429 O CYS 41 12.059 -0.348 -6.365 1.00 3.69 O ATOM 430 OXT CYS 41 13.771 -1.412 -5.483 1.00 3.69 O TER END