####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS112_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 4.29 4.29 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 1.77 5.72 LONGEST_CONTINUOUS_SEGMENT: 19 2 - 20 1.87 5.94 LONGEST_CONTINUOUS_SEGMENT: 19 15 - 33 1.96 6.01 LONGEST_CONTINUOUS_SEGMENT: 19 16 - 34 1.85 6.32 LONGEST_CONTINUOUS_SEGMENT: 19 17 - 35 1.86 6.89 LCS_AVERAGE: 44.20 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.97 7.92 LCS_AVERAGE: 26.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 19 41 3 3 4 12 19 23 24 27 29 31 35 37 40 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 19 41 5 11 14 17 21 23 24 27 29 31 32 37 40 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 19 41 5 11 14 17 21 23 24 27 29 31 32 37 40 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 19 41 5 11 14 17 21 23 24 27 29 31 32 36 40 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 19 41 5 11 14 17 21 23 24 27 29 31 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 19 41 9 11 14 17 21 23 24 27 29 31 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 19 41 9 11 14 17 21 23 24 27 29 31 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 19 41 9 11 14 16 21 23 24 27 29 31 35 37 40 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 19 41 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 19 41 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 19 41 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 19 41 9 11 14 15 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 19 41 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 19 41 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 19 41 3 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 19 41 3 4 10 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 7 19 41 3 7 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 7 19 41 4 9 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 7 19 41 4 9 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 10 19 41 4 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 10 19 41 4 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 10 19 41 3 8 12 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 10 19 41 4 9 14 16 19 21 24 27 30 32 34 37 40 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 10 19 41 4 8 14 16 18 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 10 19 41 4 8 12 16 18 21 23 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 10 19 41 4 8 14 16 18 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 10 19 41 4 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 10 19 41 4 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 10 19 41 5 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 10 19 41 5 9 14 16 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 10 19 41 5 9 14 16 19 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 10 19 41 5 9 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 10 19 41 5 9 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 9 19 41 3 9 12 15 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 5 19 41 3 5 7 12 19 21 24 25 26 30 33 34 38 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 13 41 5 6 7 13 19 21 24 27 30 32 34 37 40 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 13 41 5 6 7 14 19 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 13 41 5 6 7 12 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 13 41 5 7 10 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 13 41 5 6 7 14 19 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 13 41 3 6 7 14 19 21 24 27 30 32 35 37 40 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 56.77 ( 26.12 44.20 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 11 14 17 21 23 24 27 30 32 35 37 40 41 41 41 41 41 41 41 GDT PERCENT_AT 21.95 26.83 34.15 41.46 51.22 56.10 58.54 65.85 73.17 78.05 85.37 90.24 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.23 0.43 0.75 1.43 1.62 1.85 1.92 2.43 3.13 3.32 3.80 3.93 4.20 4.29 4.29 4.29 4.29 4.29 4.29 4.29 GDT RMS_ALL_AT 9.32 8.88 8.45 5.87 5.87 5.56 5.60 5.24 5.22 4.95 4.36 4.36 4.30 4.29 4.29 4.29 4.29 4.29 4.29 4.29 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.397 0 0.140 0.691 4.402 23.182 23.030 3.198 LGA Q 2 Q 2 1.518 0 0.240 0.619 3.009 58.182 47.677 3.009 LGA E 3 E 3 2.688 0 0.095 0.975 6.956 30.000 15.556 5.775 LGA T 4 T 4 3.077 0 0.000 1.132 5.653 22.727 16.364 5.653 LGA R 5 R 5 1.751 0 0.033 2.156 9.528 54.545 30.909 9.394 LGA K 6 K 6 0.737 0 0.052 1.130 7.601 77.727 43.838 7.412 LGA K 7 K 7 2.529 0 0.054 0.666 6.343 38.636 19.192 6.343 LGA C 8 C 8 2.710 0 0.037 0.071 4.301 38.636 29.697 4.301 LGA T 9 T 9 1.389 0 0.030 1.071 4.306 69.545 57.143 1.424 LGA E 10 E 10 1.603 0 0.049 1.166 8.002 62.273 32.727 8.002 LGA M 11 M 11 2.287 0 0.090 0.266 5.081 47.727 27.727 4.562 LGA K 12 K 12 2.091 0 0.076 0.641 5.315 44.545 24.848 5.315 LGA K 13 K 13 2.085 0 0.046 0.747 8.197 51.364 27.071 8.197 LGA K 14 K 14 1.774 0 0.060 0.703 4.353 58.182 36.970 3.214 LGA F 15 F 15 1.581 0 0.430 0.472 4.228 40.000 60.661 1.349 LGA K 16 K 16 1.577 0 0.562 1.102 4.256 55.000 40.000 4.256 LGA N 17 N 17 1.488 0 0.599 1.121 4.053 67.273 44.545 4.053 LGA C 18 C 18 2.038 0 0.096 0.865 5.332 48.182 35.152 5.332 LGA E 19 E 19 0.970 0 0.177 0.982 4.211 66.364 44.444 4.211 LGA V 20 V 20 4.116 0 0.038 0.077 6.134 6.364 3.896 6.134 LGA R 21 R 21 5.887 0 0.054 1.167 10.363 0.000 0.000 9.589 LGA C 22 C 22 7.957 0 0.060 0.820 8.508 0.000 0.000 8.508 LGA D 23 D 23 9.617 0 0.253 0.689 11.013 0.000 0.000 9.572 LGA E 24 E 24 9.713 0 0.051 0.632 11.477 0.000 0.000 11.477 LGA S 25 S 25 9.803 0 0.045 0.652 10.243 0.000 0.000 10.243 LGA N 26 N 26 9.799 0 0.069 1.142 12.321 0.000 0.000 12.321 LGA H 27 H 27 9.542 0 0.058 1.143 12.906 0.000 0.000 10.534 LGA C 28 C 28 8.422 0 0.117 0.131 9.772 0.000 0.000 9.772 LGA V 29 V 29 6.670 0 0.120 0.146 7.451 0.000 0.000 6.092 LGA E 30 E 30 4.338 0 0.073 0.859 5.245 6.818 8.081 5.245 LGA V 31 V 31 2.134 0 0.040 0.119 3.746 53.182 41.299 2.484 LGA R 32 R 32 1.179 0 0.214 1.238 12.703 59.091 25.950 12.703 LGA C 33 C 33 3.060 0 0.526 0.615 5.455 15.455 13.030 3.850 LGA S 34 S 34 6.444 0 0.545 0.585 10.635 0.000 0.909 4.247 LGA D 35 D 35 10.133 0 0.432 0.898 11.764 0.000 0.000 10.318 LGA T 36 T 36 8.274 0 0.153 0.197 9.268 0.000 0.000 9.268 LGA K 37 K 37 6.798 0 0.074 1.281 9.901 0.000 0.000 9.702 LGA Y 38 Y 38 4.702 0 0.075 1.183 8.447 15.000 5.758 8.447 LGA T 39 T 39 2.496 0 0.127 1.026 5.815 37.273 23.636 3.743 LGA L 40 L 40 2.808 0 0.129 0.930 8.056 22.727 12.045 6.102 LGA C 41 C 41 4.320 0 0.477 1.257 7.743 5.909 9.870 2.768 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 4.290 4.244 5.054 28.681 19.562 7.361 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 27 2.43 58.537 57.937 1.066 LGA_LOCAL RMSD: 2.433 Number of atoms: 27 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.236 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 4.290 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.063432 * X + -0.661888 * Y + 0.746914 * Z + 64.002174 Y_new = -0.707339 * X + -0.498151 * Y + -0.501515 * Z + 273.186737 Z_new = 0.704023 * X + -0.560133 * Y + -0.436580 * Z + -131.516983 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.660235 -0.781047 -2.232863 [DEG: -95.1244 -44.7507 -127.9336 ] ZXZ: 0.979490 2.022590 2.242859 [DEG: 56.1206 115.8859 128.5064 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS112_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 27 2.43 57.937 4.29 REMARK ---------------------------------------------------------- MOLECULE T0955TS112_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -1.908 -12.212 -1.500 1.00 8.30 N ATOM 2 CA SER 1 -1.396 -13.158 -0.484 1.00 8.25 C ATOM 3 CB SER 1 -0.141 -13.880 -1.003 1.00 8.41 C ATOM 4 OG SER 1 0.350 -14.780 -0.020 1.00 8.71 O ATOM 5 C SER 1 -1.040 -12.430 0.768 1.00 7.46 C ATOM 6 O SER 1 -0.953 -11.205 0.786 1.00 7.08 O ATOM 7 N GLN 2 -0.850 -13.184 1.865 1.00 7.29 N ATOM 8 CA GLN 2 -0.501 -12.583 3.117 1.00 6.76 C ATOM 9 CB GLN 2 -0.486 -13.569 4.303 1.00 6.95 C ATOM 10 CG GLN 2 -0.272 -12.865 5.647 1.00 7.21 C ATOM 11 CD GLN 2 -0.445 -13.885 6.763 1.00 7.76 C ATOM 12 OE1 GLN 2 -0.614 -13.527 7.928 1.00 8.15 O ATOM 13 NE2 GLN 2 -0.405 -15.195 6.400 1.00 8.03 N ATOM 14 C GLN 2 0.869 -12.009 2.976 1.00 5.63 C ATOM 15 O GLN 2 1.165 -10.940 3.501 1.00 5.18 O ATOM 16 N GLU 3 1.742 -12.720 2.240 1.00 5.26 N ATOM 17 CA GLU 3 3.110 -12.326 2.070 1.00 4.32 C ATOM 18 CB GLU 3 3.875 -13.310 1.168 1.00 4.35 C ATOM 19 CG GLU 3 5.340 -12.944 0.934 1.00 4.45 C ATOM 20 CD GLU 3 5.908 -13.937 -0.071 1.00 4.63 C ATOM 21 OE1 GLU 3 5.682 -15.163 0.110 1.00 4.54 O ATOM 22 OE2 GLU 3 6.575 -13.483 -1.037 1.00 5.21 O ATOM 23 C GLU 3 3.181 -10.993 1.396 1.00 4.24 C ATOM 24 O GLU 3 3.918 -10.110 1.829 1.00 3.52 O ATOM 25 N THR 4 2.404 -10.813 0.318 1.00 5.10 N ATOM 26 CA THR 4 2.469 -9.608 -0.457 1.00 5.21 C ATOM 27 CB THR 4 1.591 -9.660 -1.674 1.00 6.32 C ATOM 28 OG1 THR 4 1.966 -10.744 -2.510 1.00 6.70 O ATOM 29 CG2 THR 4 1.729 -8.332 -2.436 1.00 7.07 C ATOM 30 C THR 4 2.011 -8.443 0.354 1.00 4.88 C ATOM 31 O THR 4 2.632 -7.382 0.347 1.00 4.37 O ATOM 32 N ARG 5 0.915 -8.628 1.106 1.00 5.34 N ATOM 33 CA ARG 5 0.308 -7.545 1.816 1.00 5.39 C ATOM 34 CB ARG 5 -0.998 -7.936 2.523 1.00 6.34 C ATOM 35 CG ARG 5 -2.143 -8.123 1.532 1.00 7.07 C ATOM 36 CD ARG 5 -2.324 -6.910 0.614 1.00 8.03 C ATOM 37 NE ARG 5 -2.616 -5.734 1.483 1.00 8.32 N ATOM 38 CZ ARG 5 -2.098 -4.506 1.180 1.00 8.78 C ATOM 39 NH1 ARG 5 -1.284 -4.359 0.096 1.00 8.99 N ATOM 40 NH2 ARG 5 -2.390 -3.424 1.961 1.00 9.27 N ATOM 41 C ARG 5 1.238 -6.999 2.840 1.00 4.45 C ATOM 42 O ARG 5 1.245 -5.800 3.108 1.00 4.17 O ATOM 43 N LYS 6 2.059 -7.864 3.441 1.00 4.05 N ATOM 44 CA LYS 6 2.892 -7.458 4.528 1.00 3.50 C ATOM 45 CB LYS 6 3.741 -8.634 5.030 1.00 3.46 C ATOM 46 CG LYS 6 2.886 -9.760 5.608 1.00 4.05 C ATOM 47 CD LYS 6 3.637 -11.081 5.732 1.00 4.15 C ATOM 48 CE LYS 6 3.426 -11.758 7.083 1.00 4.82 C ATOM 49 NZ LYS 6 4.138 -10.995 8.134 1.00 5.24 N ATOM 50 C LYS 6 3.810 -6.348 4.114 1.00 2.61 C ATOM 51 O LYS 6 3.948 -5.365 4.836 1.00 2.50 O ATOM 52 N LYS 7 4.464 -6.464 2.946 1.00 2.36 N ATOM 53 CA LYS 7 5.420 -5.473 2.534 1.00 2.09 C ATOM 54 CB LYS 7 6.211 -5.863 1.275 1.00 2.83 C ATOM 55 CG LYS 7 7.274 -6.937 1.509 1.00 3.38 C ATOM 56 CD LYS 7 7.949 -7.391 0.213 1.00 4.10 C ATOM 57 CE LYS 7 9.147 -8.316 0.424 1.00 4.77 C ATOM 58 NZ LYS 7 9.807 -8.589 -0.873 1.00 5.44 N ATOM 59 C LYS 7 4.776 -4.157 2.234 1.00 2.11 C ATOM 60 O LYS 7 5.289 -3.110 2.623 1.00 1.89 O ATOM 61 N CYS 8 3.628 -4.173 1.534 1.00 2.75 N ATOM 62 CA CYS 8 3.005 -2.966 1.078 1.00 2.98 C ATOM 63 CB CYS 8 1.735 -3.241 0.252 1.00 4.08 C ATOM 64 SG CYS 8 0.929 -1.723 -0.339 1.00 5.11 S ATOM 65 C CYS 8 2.632 -2.135 2.256 1.00 2.50 C ATOM 66 O CYS 8 2.796 -0.921 2.235 1.00 2.18 O ATOM 67 N THR 9 2.114 -2.768 3.320 1.00 2.86 N ATOM 68 CA THR 9 1.709 -2.063 4.501 1.00 3.22 C ATOM 69 CB THR 9 1.053 -2.953 5.512 1.00 4.17 C ATOM 70 OG1 THR 9 1.970 -3.947 5.947 1.00 4.64 O ATOM 71 CG2 THR 9 -0.189 -3.607 4.881 1.00 4.59 C ATOM 72 C THR 9 2.909 -1.457 5.160 1.00 2.78 C ATOM 73 O THR 9 2.860 -0.313 5.602 1.00 3.03 O ATOM 74 N GLU 10 4.022 -2.208 5.254 1.00 2.48 N ATOM 75 CA GLU 10 5.208 -1.716 5.894 1.00 2.88 C ATOM 76 CB GLU 10 6.357 -2.742 5.873 1.00 3.04 C ATOM 77 CG GLU 10 7.709 -2.201 6.352 1.00 3.85 C ATOM 78 CD GLU 10 7.732 -2.214 7.871 1.00 4.46 C ATOM 79 OE1 GLU 10 6.691 -1.853 8.482 1.00 4.58 O ATOM 80 OE2 GLU 10 8.791 -2.585 8.441 1.00 5.20 O ATOM 81 C GLU 10 5.682 -0.546 5.118 1.00 2.65 C ATOM 82 O GLU 10 6.006 0.500 5.675 1.00 3.32 O ATOM 83 N MET 11 5.711 -0.701 3.788 1.00 2.03 N ATOM 84 CA MET 11 6.194 0.331 2.934 1.00 2.34 C ATOM 85 CB MET 11 6.253 -0.108 1.463 1.00 2.61 C ATOM 86 CG MET 11 7.181 -1.308 1.241 1.00 3.39 C ATOM 87 SD MET 11 8.931 -1.046 1.677 1.00 4.65 S ATOM 88 CE MET 11 8.728 -1.072 3.483 1.00 5.06 C ATOM 89 C MET 11 5.270 1.495 3.061 1.00 2.06 C ATOM 90 O MET 11 5.700 2.642 3.088 1.00 2.57 O ATOM 91 N LYS 12 3.961 1.230 3.163 1.00 1.64 N ATOM 92 CA LYS 12 3.017 2.302 3.240 1.00 1.78 C ATOM 93 CB LYS 12 1.565 1.815 3.262 1.00 2.46 C ATOM 94 CG LYS 12 1.116 1.217 1.928 1.00 3.06 C ATOM 95 CD LYS 12 -0.261 0.559 1.991 1.00 3.84 C ATOM 96 CE LYS 12 -0.358 -0.584 3.001 1.00 4.70 C ATOM 97 NZ LYS 12 -1.776 -0.958 3.208 1.00 5.37 N ATOM 98 C LYS 12 3.263 3.090 4.483 1.00 2.47 C ATOM 99 O LYS 12 3.202 4.316 4.472 1.00 2.66 O ATOM 100 N LYS 13 3.545 2.407 5.602 1.00 3.15 N ATOM 101 CA LYS 13 3.787 3.090 6.837 1.00 4.21 C ATOM 102 CB LYS 13 4.041 2.126 8.010 1.00 5.02 C ATOM 103 CG LYS 13 2.763 1.480 8.545 1.00 5.98 C ATOM 104 CD LYS 13 1.792 2.500 9.142 1.00 6.78 C ATOM 105 CE LYS 13 0.489 1.895 9.664 1.00 7.50 C ATOM 106 NZ LYS 13 -0.260 2.918 10.426 1.00 8.07 N ATOM 107 C LYS 13 5.007 3.933 6.684 1.00 4.50 C ATOM 108 O LYS 13 5.047 5.069 7.151 1.00 5.08 O ATOM 109 N LYS 14 6.041 3.403 6.011 1.00 4.36 N ATOM 110 CA LYS 14 7.256 4.150 5.878 1.00 5.11 C ATOM 111 CB LYS 14 8.386 3.415 5.137 1.00 5.33 C ATOM 112 CG LYS 14 9.135 2.397 5.998 1.00 6.04 C ATOM 113 CD LYS 14 10.236 1.663 5.229 1.00 6.66 C ATOM 114 CE LYS 14 11.179 0.852 6.121 1.00 7.33 C ATOM 115 NZ LYS 14 12.322 0.351 5.323 1.00 7.82 N ATOM 116 C LYS 14 6.981 5.410 5.124 1.00 4.91 C ATOM 117 O LYS 14 7.504 6.467 5.469 1.00 5.61 O ATOM 118 N PHE 15 6.133 5.352 4.085 1.00 3.99 N ATOM 119 CA PHE 15 5.908 6.538 3.311 1.00 3.93 C ATOM 120 CB PHE 15 4.952 6.371 2.105 1.00 3.30 C ATOM 121 CG PHE 15 5.528 5.400 1.125 1.00 4.05 C ATOM 122 CD1 PHE 15 6.650 5.714 0.389 1.00 4.80 C ATOM 123 CD2 PHE 15 4.953 4.162 0.954 1.00 4.41 C ATOM 124 CE1 PHE 15 7.178 4.810 -0.507 1.00 5.75 C ATOM 125 CE2 PHE 15 5.475 3.254 0.064 1.00 5.41 C ATOM 126 CZ PHE 15 6.591 3.577 -0.670 1.00 6.02 C ATOM 127 C PHE 15 5.308 7.571 4.208 1.00 3.89 C ATOM 128 O PHE 15 5.607 8.754 4.071 1.00 4.34 O ATOM 129 N LYS 16 4.408 7.140 5.115 1.00 3.61 N ATOM 130 CA LYS 16 3.728 7.960 6.079 1.00 3.88 C ATOM 131 CB LYS 16 4.323 9.345 6.399 1.00 4.08 C ATOM 132 CG LYS 16 3.728 9.942 7.677 1.00 4.53 C ATOM 133 CD LYS 16 4.523 11.117 8.244 1.00 4.79 C ATOM 134 CE LYS 16 3.951 12.481 7.863 1.00 5.04 C ATOM 135 NZ LYS 16 2.728 12.748 8.654 1.00 5.49 N ATOM 136 C LYS 16 2.342 8.136 5.572 1.00 4.29 C ATOM 137 O LYS 16 1.686 7.163 5.209 1.00 4.68 O ATOM 138 N ASN 17 1.859 9.393 5.546 1.00 4.44 N ATOM 139 CA ASN 17 0.521 9.621 5.093 1.00 4.89 C ATOM 140 CB ASN 17 0.126 11.112 5.087 1.00 5.80 C ATOM 141 CG ASN 17 1.117 11.922 4.253 1.00 6.32 C ATOM 142 OD1 ASN 17 0.968 12.062 3.041 1.00 6.48 O ATOM 143 ND2 ASN 17 2.146 12.499 4.931 1.00 6.95 N ATOM 144 C ASN 17 0.370 9.044 3.725 1.00 4.46 C ATOM 145 O ASN 17 0.901 9.547 2.736 1.00 4.61 O ATOM 146 N CYS 18 -0.376 7.930 3.656 1.00 4.06 N ATOM 147 CA CYS 18 -0.609 7.272 2.411 1.00 3.73 C ATOM 148 CB CYS 18 -0.004 5.863 2.360 1.00 3.35 C ATOM 149 SG CYS 18 -0.324 5.043 0.771 1.00 3.61 S ATOM 150 C CYS 18 -2.086 7.108 2.288 1.00 3.92 C ATOM 151 O CYS 18 -2.752 6.692 3.232 1.00 4.19 O ATOM 152 N GLU 19 -2.656 7.446 1.121 1.00 3.97 N ATOM 153 CA GLU 19 -4.073 7.258 0.993 1.00 4.21 C ATOM 154 CB GLU 19 -4.855 8.535 0.630 1.00 4.57 C ATOM 155 CG GLU 19 -5.161 9.433 1.832 1.00 4.78 C ATOM 156 CD GLU 19 -6.476 8.937 2.421 1.00 5.35 C ATOM 157 OE1 GLU 19 -7.184 8.202 1.683 1.00 5.75 O ATOM 158 OE2 GLU 19 -6.794 9.277 3.592 1.00 5.67 O ATOM 159 C GLU 19 -4.322 6.255 -0.085 1.00 4.09 C ATOM 160 O GLU 19 -3.941 6.450 -1.237 1.00 4.01 O ATOM 161 N VAL 20 -4.983 5.139 0.271 1.00 4.24 N ATOM 162 CA VAL 20 -5.272 4.154 -0.727 1.00 4.27 C ATOM 163 CB VAL 20 -4.873 2.760 -0.333 1.00 4.57 C ATOM 164 CG1 VAL 20 -5.353 1.780 -1.420 1.00 4.99 C ATOM 165 CG2 VAL 20 -3.356 2.736 -0.085 1.00 4.72 C ATOM 166 C VAL 20 -6.749 4.124 -0.934 1.00 4.37 C ATOM 167 O VAL 20 -7.516 3.854 -0.012 1.00 4.63 O ATOM 168 N ARG 21 -7.190 4.406 -2.171 1.00 4.31 N ATOM 169 CA ARG 21 -8.591 4.316 -2.446 1.00 4.45 C ATOM 170 CB ARG 21 -9.167 5.541 -3.180 1.00 4.57 C ATOM 171 CG ARG 21 -9.399 6.755 -2.276 1.00 4.81 C ATOM 172 CD ARG 21 -10.718 6.672 -1.502 1.00 5.40 C ATOM 173 NE ARG 21 -10.829 7.885 -0.639 1.00 5.73 N ATOM 174 CZ ARG 21 -11.452 9.009 -1.098 1.00 5.99 C ATOM 175 NH1 ARG 21 -11.985 9.028 -2.355 1.00 5.99 N ATOM 176 NH2 ARG 21 -11.547 10.112 -0.299 1.00 6.59 N ATOM 177 C ARG 21 -8.759 3.129 -3.336 1.00 4.46 C ATOM 178 O ARG 21 -8.201 3.068 -4.430 1.00 4.45 O ATOM 179 N CYS 22 -9.537 2.135 -2.874 1.00 4.63 N ATOM 180 CA CYS 22 -9.696 0.952 -3.658 1.00 4.78 C ATOM 181 CB CYS 22 -9.168 -0.307 -2.949 1.00 5.18 C ATOM 182 SG CYS 22 -10.059 -0.659 -1.402 1.00 5.55 S ATOM 183 C CYS 22 -11.149 0.741 -3.928 1.00 4.76 C ATOM 184 O CYS 22 -11.992 0.843 -3.037 1.00 4.96 O ATOM 185 N ASP 23 -11.476 0.450 -5.199 1.00 4.65 N ATOM 186 CA ASP 23 -12.831 0.168 -5.565 1.00 4.65 C ATOM 187 CB ASP 23 -13.254 0.801 -6.900 1.00 4.51 C ATOM 188 CG ASP 23 -13.266 2.309 -6.714 1.00 4.54 C ATOM 189 OD1 ASP 23 -13.017 2.767 -5.566 1.00 4.66 O ATOM 190 OD2 ASP 23 -13.526 3.025 -7.717 1.00 4.83 O ATOM 191 C ASP 23 -12.900 -1.314 -5.749 1.00 5.22 C ATOM 192 O ASP 23 -12.300 -1.871 -6.664 1.00 5.80 O ATOM 193 N GLU 24 -13.654 -1.995 -4.874 1.00 5.31 N ATOM 194 CA GLU 24 -13.739 -3.425 -4.908 1.00 5.95 C ATOM 195 CB GLU 24 -14.676 -3.982 -3.823 1.00 6.19 C ATOM 196 CG GLU 24 -16.121 -3.498 -3.997 1.00 6.51 C ATOM 197 CD GLU 24 -17.040 -4.382 -3.167 1.00 7.03 C ATOM 198 OE1 GLU 24 -16.530 -5.371 -2.575 1.00 7.18 O ATOM 199 OE2 GLU 24 -18.265 -4.089 -3.119 1.00 7.57 O ATOM 200 C GLU 24 -14.342 -3.868 -6.205 1.00 6.08 C ATOM 201 O GLU 24 -13.938 -4.880 -6.777 1.00 6.51 O ATOM 202 N SER 25 -15.355 -3.135 -6.696 1.00 5.99 N ATOM 203 CA SER 25 -16.038 -3.557 -7.884 1.00 6.42 C ATOM 204 CB SER 25 -17.197 -2.622 -8.258 1.00 6.56 C ATOM 205 OG SER 25 -16.696 -1.327 -8.549 1.00 6.60 O ATOM 206 C SER 25 -15.088 -3.575 -9.041 1.00 6.57 C ATOM 207 O SER 25 -14.986 -4.568 -9.760 1.00 6.87 O ATOM 208 N ASN 26 -14.384 -2.448 -9.245 1.00 6.74 N ATOM 209 CA ASN 26 -13.450 -2.237 -10.316 1.00 7.23 C ATOM 210 CB ASN 26 -12.982 -0.780 -10.417 1.00 7.69 C ATOM 211 CG ASN 26 -14.156 0.088 -10.830 1.00 8.31 C ATOM 212 OD1 ASN 26 -15.188 -0.407 -11.280 1.00 8.67 O ATOM 213 ND2 ASN 26 -13.984 1.429 -10.689 1.00 8.71 N ATOM 214 C ASN 26 -12.212 -3.052 -10.102 1.00 7.30 C ATOM 215 O ASN 26 -11.595 -3.517 -11.057 1.00 7.72 O ATOM 216 N HIS 27 -11.815 -3.256 -8.833 1.00 7.16 N ATOM 217 CA HIS 27 -10.593 -3.943 -8.528 1.00 7.48 C ATOM 218 ND1 HIS 27 -12.836 -6.230 -9.484 1.00 9.15 N ATOM 219 CG HIS 27 -11.608 -6.228 -8.864 1.00 8.61 C ATOM 220 CB HIS 27 -10.491 -5.304 -9.234 1.00 7.95 C ATOM 221 NE2 HIS 27 -12.923 -7.789 -7.901 1.00 9.80 N ATOM 222 CD2 HIS 27 -11.677 -7.189 -7.901 1.00 9.06 C ATOM 223 CE1 HIS 27 -13.585 -7.180 -8.871 1.00 9.82 C ATOM 224 C HIS 27 -9.427 -3.109 -8.983 1.00 7.02 C ATOM 225 O HIS 27 -8.368 -3.636 -9.315 1.00 7.36 O ATOM 226 N CYS 28 -9.577 -1.770 -8.971 1.00 6.28 N ATOM 227 CA CYS 28 -8.496 -0.903 -9.342 1.00 5.88 C ATOM 228 CB CYS 28 -8.928 0.240 -10.272 1.00 5.63 C ATOM 229 SG CYS 28 -9.574 -0.370 -11.857 1.00 5.93 S ATOM 230 C CYS 28 -8.027 -0.265 -8.076 1.00 5.38 C ATOM 231 O CYS 28 -8.822 0.003 -7.177 1.00 5.19 O ATOM 232 N VAL 29 -6.713 -0.007 -7.951 1.00 5.25 N ATOM 233 CA VAL 29 -6.286 0.594 -6.723 1.00 4.82 C ATOM 234 CB VAL 29 -5.364 -0.266 -5.913 1.00 5.25 C ATOM 235 CG1 VAL 29 -4.919 0.528 -4.669 1.00 5.16 C ATOM 236 CG2 VAL 29 -6.084 -1.587 -5.590 1.00 5.65 C ATOM 237 C VAL 29 -5.545 1.848 -7.030 1.00 4.29 C ATOM 238 O VAL 29 -4.771 1.925 -7.984 1.00 4.48 O ATOM 239 N GLU 30 -5.790 2.886 -6.214 1.00 3.69 N ATOM 240 CA GLU 30 -5.088 4.121 -6.367 1.00 3.24 C ATOM 241 CB GLU 30 -6.007 5.337 -6.574 1.00 2.92 C ATOM 242 CG GLU 30 -5.269 6.681 -6.540 1.00 3.23 C ATOM 243 CD GLU 30 -4.556 6.900 -7.868 1.00 3.60 C ATOM 244 OE1 GLU 30 -4.478 5.935 -8.675 1.00 3.83 O ATOM 245 OE2 GLU 30 -4.082 8.046 -8.090 1.00 4.20 O ATOM 246 C GLU 30 -4.357 4.351 -5.094 1.00 3.00 C ATOM 247 O GLU 30 -4.940 4.327 -4.011 1.00 3.00 O ATOM 248 N VAL 31 -3.036 4.561 -5.179 1.00 2.98 N ATOM 249 CA VAL 31 -2.337 4.810 -3.963 1.00 2.82 C ATOM 250 CB VAL 31 -1.297 3.780 -3.663 1.00 3.36 C ATOM 251 CG1 VAL 31 -0.520 4.209 -2.406 1.00 3.59 C ATOM 252 CG2 VAL 31 -2.009 2.422 -3.536 1.00 4.20 C ATOM 253 C VAL 31 -1.649 6.112 -4.127 1.00 2.42 C ATOM 254 O VAL 31 -0.858 6.308 -5.048 1.00 2.61 O ATOM 255 N ARG 32 -1.953 7.059 -3.233 1.00 2.15 N ATOM 256 CA ARG 32 -1.253 8.295 -3.327 1.00 2.08 C ATOM 257 CB ARG 32 -2.127 9.552 -3.322 1.00 2.25 C ATOM 258 CG ARG 32 -1.244 10.790 -3.436 1.00 2.75 C ATOM 259 CD ARG 32 -1.937 12.114 -3.142 1.00 3.04 C ATOM 260 NE ARG 32 -0.874 13.147 -3.259 1.00 3.42 N ATOM 261 CZ ARG 32 -0.892 14.255 -2.462 1.00 3.64 C ATOM 262 NH1 ARG 32 -1.926 14.469 -1.598 1.00 3.63 N ATOM 263 NH2 ARG 32 0.143 15.142 -2.526 1.00 4.35 N ATOM 264 C ARG 32 -0.421 8.388 -2.097 1.00 2.14 C ATOM 265 O ARG 32 -0.903 8.194 -0.983 1.00 2.32 O ATOM 266 N CYS 33 0.875 8.676 -2.268 1.00 2.28 N ATOM 267 CA CYS 33 1.705 8.811 -1.114 1.00 2.43 C ATOM 268 CB CYS 33 2.827 7.761 -1.023 1.00 2.74 C ATOM 269 SG CYS 33 2.213 6.061 -0.881 1.00 3.52 S ATOM 270 C CYS 33 2.387 10.128 -1.223 1.00 2.79 C ATOM 271 O CYS 33 2.823 10.534 -2.299 1.00 3.12 O ATOM 272 N SER 34 2.492 10.855 -0.101 1.00 3.10 N ATOM 273 CA SER 34 3.231 12.069 -0.209 1.00 3.71 C ATOM 274 CB SER 34 2.939 13.078 0.908 1.00 4.18 C ATOM 275 OG SER 34 1.601 13.537 0.783 1.00 4.26 O ATOM 276 C SER 34 4.663 11.669 -0.132 1.00 3.98 C ATOM 277 O SER 34 4.995 10.678 0.515 1.00 4.36 O ATOM 278 N ASP 35 5.537 12.433 -0.815 1.00 4.20 N ATOM 279 CA ASP 35 6.953 12.188 -0.848 1.00 4.67 C ATOM 280 CB ASP 35 7.550 11.613 0.453 1.00 4.89 C ATOM 281 CG ASP 35 9.056 11.795 0.414 1.00 5.10 C ATOM 282 OD1 ASP 35 9.557 12.424 -0.556 1.00 5.21 O ATOM 283 OD2 ASP 35 9.727 11.307 1.362 1.00 5.49 O ATOM 284 C ASP 35 7.250 11.248 -1.979 1.00 5.06 C ATOM 285 O ASP 35 7.031 11.571 -3.144 1.00 5.46 O ATOM 286 N THR 36 7.766 10.048 -1.655 1.00 5.27 N ATOM 287 CA THR 36 8.146 9.096 -2.663 1.00 5.91 C ATOM 288 CB THR 36 8.961 7.965 -2.102 1.00 6.11 C ATOM 289 OG1 THR 36 10.137 8.472 -1.486 1.00 6.25 O ATOM 290 CG2 THR 36 9.331 6.997 -3.239 1.00 6.49 C ATOM 291 C THR 36 6.910 8.525 -3.295 1.00 5.73 C ATOM 292 O THR 36 5.828 8.536 -2.713 1.00 5.22 O ATOM 293 N LYS 37 7.041 8.019 -4.540 1.00 6.43 N ATOM 294 CA LYS 37 5.914 7.469 -5.237 1.00 6.55 C ATOM 295 CB LYS 37 5.895 7.795 -6.741 1.00 7.52 C ATOM 296 CG LYS 37 5.771 9.290 -7.050 1.00 7.65 C ATOM 297 CD LYS 37 6.024 9.642 -8.520 1.00 8.22 C ATOM 298 CE LYS 37 4.815 9.391 -9.423 1.00 8.89 C ATOM 299 NZ LYS 37 5.129 9.797 -10.813 1.00 9.47 N ATOM 300 C LYS 37 5.980 5.979 -5.122 1.00 6.81 C ATOM 301 O LYS 37 7.035 5.371 -5.281 1.00 7.52 O ATOM 302 N TYR 38 4.826 5.357 -4.819 1.00 6.34 N ATOM 303 CA TYR 38 4.736 3.932 -4.675 1.00 6.60 C ATOM 304 CB TYR 38 4.496 3.539 -3.207 1.00 5.88 C ATOM 305 CG TYR 38 4.284 2.071 -3.093 1.00 6.17 C ATOM 306 CD1 TYR 38 5.351 1.212 -2.978 1.00 6.73 C ATOM 307 CD2 TYR 38 3.008 1.558 -3.095 1.00 6.19 C ATOM 308 CE1 TYR 38 5.146 -0.142 -2.861 1.00 7.27 C ATOM 309 CE2 TYR 38 2.797 0.205 -2.979 1.00 6.71 C ATOM 310 CZ TYR 38 3.868 -0.649 -2.865 1.00 7.23 C ATOM 311 OH TYR 38 3.662 -2.039 -2.743 1.00 7.95 O ATOM 312 C TYR 38 3.550 3.486 -5.469 1.00 6.90 C ATOM 313 O TYR 38 2.488 4.100 -5.402 1.00 6.64 O ATOM 314 N THR 39 3.692 2.401 -6.253 1.00 7.67 N ATOM 315 CA THR 39 2.567 1.958 -7.019 1.00 8.12 C ATOM 316 CB THR 39 2.853 1.843 -8.488 1.00 9.27 C ATOM 317 OG1 THR 39 1.645 1.610 -9.197 1.00 9.75 O ATOM 318 CG2 THR 39 3.845 0.692 -8.724 1.00 9.87 C ATOM 319 C THR 39 2.165 0.611 -6.505 1.00 8.04 C ATOM 320 O THR 39 2.997 -0.269 -6.299 1.00 8.42 O ATOM 321 N LEU 40 0.855 0.441 -6.240 1.00 7.67 N ATOM 322 CA LEU 40 0.334 -0.817 -5.792 1.00 7.66 C ATOM 323 CB LEU 40 -0.300 -0.749 -4.389 1.00 6.70 C ATOM 324 CG LEU 40 -0.917 -2.074 -3.898 1.00 6.76 C ATOM 325 CD1 LEU 40 0.150 -3.162 -3.695 1.00 6.97 C ATOM 326 CD2 LEU 40 -1.793 -1.853 -2.653 1.00 6.75 C ATOM 327 C LEU 40 -0.756 -1.188 -6.735 1.00 8.37 C ATOM 328 O LEU 40 -1.623 -0.369 -7.037 1.00 8.49 O ATOM 329 N CYS 41 -0.760 -2.439 -7.227 1.00 9.06 N ATOM 330 CA CYS 41 -1.782 -2.808 -8.163 1.00 9.86 C ATOM 331 CB CYS 41 -1.214 -3.170 -9.550 1.00 10.66 C ATOM 332 SG CYS 41 -2.494 -3.634 -10.758 1.00 11.22 S ATOM 333 C CYS 41 -2.520 -4.036 -7.633 1.00 9.86 C ATOM 334 O CYS 41 -1.957 -4.763 -6.774 1.00 9.88 O ATOM 335 OXT CYS 41 -3.667 -4.271 -8.100 1.00 10.05 O TER 335 OXT CYS 41 END