####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS112_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.27 2.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 2 - 40 1.85 2.31 LCS_AVERAGE: 92.80 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 2 - 19 0.98 2.78 LCS_AVERAGE: 31.83 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 24 41 3 3 4 4 18 25 29 33 38 39 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 18 39 41 7 16 23 29 32 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 18 39 41 10 16 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 18 39 41 10 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 18 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 18 39 41 3 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 18 39 41 3 14 23 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 18 39 41 6 14 23 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 18 39 41 4 14 22 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 18 39 41 4 15 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 7 39 41 8 14 21 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 7 39 41 8 14 19 28 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 39 41 8 14 19 24 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 39 41 3 9 19 25 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 39 41 9 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 5 39 41 3 5 9 25 32 35 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 5 39 41 3 4 8 13 23 35 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 6 39 41 3 9 20 29 32 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 12 39 41 3 17 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 12 39 41 8 14 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 12 39 41 6 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 12 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 12 39 41 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 12 39 41 5 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 12 39 41 3 9 19 23 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 12 39 41 8 14 20 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 39 41 6 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 39 41 5 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 12 39 41 8 13 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 12 39 41 4 16 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 12 39 41 3 9 19 24 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 4 15 41 3 5 5 12 20 28 34 37 39 40 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 74.88 ( 31.83 92.80 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 18 24 29 33 37 38 39 39 40 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 43.90 58.54 70.73 80.49 90.24 92.68 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.35 0.64 0.88 1.14 1.41 1.63 1.73 1.85 1.85 2.05 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 GDT RMS_ALL_AT 2.43 2.34 2.30 2.29 2.28 2.28 2.28 2.31 2.31 2.29 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 6.910 0 0.593 0.933 10.162 0.000 0.000 10.162 LGA Q 2 Q 2 2.466 0 0.235 1.428 3.740 41.364 43.434 2.007 LGA E 3 E 3 1.679 0 0.067 1.034 3.583 58.182 39.394 2.754 LGA T 4 T 4 1.388 0 0.032 0.986 3.011 65.909 54.805 1.539 LGA R 5 R 5 1.238 0 0.060 1.199 7.168 73.636 38.347 7.168 LGA K 6 K 6 0.479 0 0.037 0.907 4.094 90.909 56.162 3.990 LGA K 7 K 7 0.398 0 0.104 0.938 2.749 100.000 69.495 2.749 LGA C 8 C 8 0.255 0 0.059 0.088 0.532 95.455 96.970 0.262 LGA T 9 T 9 0.702 0 0.057 0.927 1.963 86.364 75.584 1.963 LGA E 10 E 10 0.508 0 0.091 0.369 1.919 86.364 76.768 1.919 LGA M 11 M 11 0.588 0 0.077 0.591 2.592 77.727 75.227 2.592 LGA K 12 K 12 1.000 0 0.038 1.025 6.058 69.545 43.636 6.058 LGA K 13 K 13 1.158 0 0.046 0.685 4.477 65.909 46.061 3.414 LGA K 14 K 14 1.171 0 0.124 0.316 1.401 65.455 65.455 1.111 LGA F 15 F 15 1.431 0 0.264 0.383 3.406 46.818 48.926 2.648 LGA K 16 K 16 2.371 0 0.297 1.444 7.587 44.545 24.444 7.587 LGA N 17 N 17 1.584 0 0.630 0.893 4.956 62.273 36.364 4.754 LGA C 18 C 18 1.666 0 0.091 0.744 4.874 47.727 40.606 4.874 LGA E 19 E 19 1.292 0 0.210 0.346 1.501 74.091 67.677 1.497 LGA V 20 V 20 2.090 0 0.057 0.138 2.773 35.455 36.623 2.278 LGA R 21 R 21 2.578 0 0.064 1.541 8.288 30.000 17.355 5.739 LGA C 22 C 22 3.100 0 0.162 0.253 3.866 28.636 25.455 3.866 LGA D 23 D 23 2.920 0 0.581 0.917 4.745 19.545 15.000 3.540 LGA E 24 E 24 1.261 0 0.408 0.820 5.880 60.000 34.343 5.880 LGA S 25 S 25 3.351 0 0.613 0.824 5.327 23.182 17.273 5.327 LGA N 26 N 26 4.323 0 0.160 0.861 9.730 19.091 9.545 7.070 LGA H 27 H 27 2.070 0 0.045 0.282 5.281 48.182 23.636 5.281 LGA C 28 C 28 1.160 0 0.072 0.098 2.625 73.636 60.000 2.625 LGA V 29 V 29 1.616 0 0.130 0.209 2.248 47.727 49.091 1.562 LGA E 30 E 30 1.046 0 0.075 0.385 2.148 61.818 60.808 2.148 LGA V 31 V 31 0.724 0 0.100 0.118 0.849 81.818 81.818 0.849 LGA R 32 R 32 0.479 0 0.297 1.379 4.357 78.636 53.058 3.945 LGA C 33 C 33 0.720 0 0.497 0.813 2.411 66.818 61.515 1.672 LGA S 34 S 34 3.261 0 0.512 0.998 5.816 14.091 12.121 4.461 LGA D 35 D 35 2.285 0 0.325 0.856 5.193 33.182 25.000 5.193 LGA T 36 T 36 0.775 0 0.136 1.033 2.288 86.818 76.623 1.913 LGA K 37 K 37 0.665 0 0.052 1.452 6.659 70.000 46.263 6.659 LGA Y 38 Y 38 1.289 0 0.087 1.136 6.992 77.727 40.909 6.992 LGA T 39 T 39 1.220 0 0.149 1.146 4.569 69.545 56.623 1.205 LGA L 40 L 40 3.239 0 0.424 0.983 4.426 16.818 14.091 3.827 LGA C 41 C 41 6.055 0 0.594 1.046 10.097 0.455 0.260 5.607 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.268 2.366 3.064 55.987 44.311 24.789 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 39 1.85 77.439 85.727 1.996 LGA_LOCAL RMSD: 1.854 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.308 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.268 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.130981 * X + -0.250052 * Y + -0.959332 * Z + 34.617893 Y_new = 0.938277 * X + 0.281201 * Y + -0.201402 * Z + -48.856213 Z_new = 0.320126 * X + -0.926499 * Y + 0.197786 * Z + 20.093996 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.709497 -0.325863 -1.360476 [DEG: 97.9470 -18.6706 -77.9495 ] ZXZ: -1.363862 1.371697 2.808912 [DEG: -78.1435 78.5925 160.9388 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS112_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 39 1.85 85.727 2.27 REMARK ---------------------------------------------------------- MOLECULE T0955TS112_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -4.838 -11.902 1.192 1.00 1.64 N ATOM 2 CA SER 1 -4.782 -10.790 2.141 1.00 1.22 C ATOM 3 CB SER 1 -5.798 -11.123 3.296 1.00 1.53 C ATOM 4 OG SER 1 -5.580 -10.319 4.463 1.00 1.96 O ATOM 5 C SER 1 -3.359 -10.536 2.729 1.00 1.05 C ATOM 6 O SER 1 -2.820 -9.409 2.646 1.00 1.02 O ATOM 7 N GLN 2 -2.772 -11.513 3.365 1.00 1.07 N ATOM 8 CA GLN 2 -1.403 -11.462 3.993 1.00 1.03 C ATOM 9 CB GLN 2 -1.157 -12.863 4.516 1.00 1.21 C ATOM 10 CG GLN 2 -2.120 -13.410 5.506 1.00 1.95 C ATOM 11 CD GLN 2 -2.507 -12.441 6.692 1.00 2.28 C ATOM 12 OE1 GLN 2 -1.581 -11.829 7.308 1.00 2.68 O ATOM 13 NE2 GLN 2 -3.825 -12.158 6.853 1.00 2.61 N ATOM 14 C GLN 2 -0.156 -10.968 3.213 1.00 0.94 C ATOM 15 O GLN 2 0.696 -10.250 3.675 1.00 0.95 O ATOM 16 N GLU 3 0.039 -11.440 1.959 1.00 0.93 N ATOM 17 CA GLU 3 1.099 -10.901 1.124 1.00 0.90 C ATOM 18 CB GLU 3 1.383 -11.876 -0.058 1.00 0.99 C ATOM 19 CG GLU 3 1.891 -13.270 0.332 1.00 1.10 C ATOM 20 CD GLU 3 1.953 -14.151 -0.870 1.00 1.92 C ATOM 21 OE1 GLU 3 3.071 -14.501 -1.418 1.00 2.49 O ATOM 22 OE2 GLU 3 0.859 -14.675 -1.252 1.00 2.74 O ATOM 23 C GLU 3 0.803 -9.485 0.727 1.00 0.81 C ATOM 24 O GLU 3 1.699 -8.605 0.763 1.00 0.83 O ATOM 25 N THR 4 -0.487 -9.107 0.370 1.00 0.76 N ATOM 26 CA THR 4 -0.846 -7.716 0.144 1.00 0.67 C ATOM 27 CB THR 4 -2.326 -7.615 -0.257 1.00 0.65 C ATOM 28 OG1 THR 4 -2.645 -7.937 -1.629 1.00 1.16 O ATOM 29 CG2 THR 4 -2.921 -6.196 -0.130 1.00 0.91 C ATOM 30 C THR 4 -0.676 -6.819 1.428 1.00 0.65 C ATOM 31 O THR 4 -0.177 -5.693 1.301 1.00 0.66 O ATOM 32 N ARG 5 -1.089 -7.276 2.599 1.00 0.72 N ATOM 33 CA ARG 5 -0.860 -6.622 3.869 1.00 0.74 C ATOM 34 CB ARG 5 -1.623 -7.310 4.978 1.00 0.87 C ATOM 35 CG ARG 5 -3.174 -7.091 4.859 1.00 0.94 C ATOM 36 CD ARG 5 -3.875 -7.674 6.123 1.00 1.06 C ATOM 37 NE ARG 5 -5.353 -7.464 5.841 1.00 1.29 N ATOM 38 CZ ARG 5 -6.295 -6.909 6.641 1.00 1.45 C ATOM 39 NH1 ARG 5 -7.415 -6.449 6.176 1.00 1.66 N ATOM 40 NH2 ARG 5 -6.139 -6.833 7.982 1.00 1.62 N ATOM 41 C ARG 5 0.559 -6.445 4.306 1.00 0.73 C ATOM 42 O ARG 5 0.894 -5.342 4.831 1.00 0.78 O ATOM 43 N LYS 6 1.537 -7.347 4.038 1.00 0.73 N ATOM 44 CA LYS 6 2.970 -7.086 4.076 1.00 0.74 C ATOM 45 CB LYS 6 3.736 -8.457 4.068 1.00 0.81 C ATOM 46 CG LYS 6 3.709 -9.338 5.265 1.00 0.93 C ATOM 47 CD LYS 6 4.634 -10.568 5.063 1.00 1.18 C ATOM 48 CE LYS 6 6.099 -10.280 4.723 1.00 1.90 C ATOM 49 NZ LYS 6 6.910 -11.549 4.432 1.00 2.61 N ATOM 50 C LYS 6 3.445 -6.068 3.069 1.00 0.72 C ATOM 51 O LYS 6 4.231 -5.150 3.417 1.00 0.75 O ATOM 52 N LYS 7 2.980 -6.106 1.834 1.00 0.72 N ATOM 53 CA LYS 7 3.209 -5.027 0.859 1.00 0.72 C ATOM 54 CB LYS 7 2.878 -5.442 -0.559 1.00 0.78 C ATOM 55 CG LYS 7 3.937 -6.511 -1.116 1.00 0.90 C ATOM 56 CD LYS 7 5.370 -6.044 -1.274 1.00 1.00 C ATOM 57 CE LYS 7 6.011 -6.800 -2.421 1.00 1.22 C ATOM 58 NZ LYS 7 7.319 -6.198 -2.743 1.00 1.20 N ATOM 59 C LYS 7 2.667 -3.650 1.099 1.00 0.70 C ATOM 60 O LYS 7 3.358 -2.641 1.079 1.00 0.75 O ATOM 61 N CYS 8 1.395 -3.600 1.555 1.00 0.67 N ATOM 62 CA CYS 8 0.793 -2.423 2.107 1.00 0.71 C ATOM 63 CB CYS 8 -0.759 -2.786 2.351 1.00 0.76 C ATOM 64 SG CYS 8 -1.782 -1.386 2.858 1.00 1.37 S ATOM 65 C CYS 8 1.486 -1.778 3.346 1.00 0.67 C ATOM 66 O CYS 8 1.757 -0.586 3.397 1.00 0.67 O ATOM 67 N THR 9 1.804 -2.513 4.441 1.00 0.69 N ATOM 68 CA THR 9 2.495 -1.997 5.587 1.00 0.72 C ATOM 69 CB THR 9 2.415 -2.929 6.880 1.00 0.83 C ATOM 70 OG1 THR 9 2.869 -4.253 6.572 1.00 0.92 O ATOM 71 CG2 THR 9 0.973 -2.932 7.516 1.00 1.43 C ATOM 72 C THR 9 3.873 -1.561 5.434 1.00 0.69 C ATOM 73 O THR 9 4.298 -0.519 5.927 1.00 0.70 O ATOM 74 N GLU 10 4.699 -2.255 4.590 1.00 0.71 N ATOM 75 CA GLU 10 5.959 -1.817 4.070 1.00 0.72 C ATOM 76 CB GLU 10 6.638 -2.987 3.186 1.00 0.84 C ATOM 77 CG GLU 10 8.091 -2.726 2.765 1.00 1.24 C ATOM 78 CD GLU 10 8.725 -4.027 2.340 1.00 1.30 C ATOM 79 OE1 GLU 10 8.679 -5.018 3.131 1.00 1.98 O ATOM 80 OE2 GLU 10 9.396 -4.102 1.272 1.00 1.43 O ATOM 81 C GLU 10 5.775 -0.516 3.338 1.00 0.70 C ATOM 82 O GLU 10 6.421 0.492 3.707 1.00 0.74 O ATOM 83 N MET 11 4.881 -0.349 2.356 1.00 0.69 N ATOM 84 CA MET 11 4.560 0.877 1.693 1.00 0.68 C ATOM 85 CB MET 11 3.491 0.606 0.582 1.00 0.75 C ATOM 86 CG MET 11 4.080 -0.058 -0.728 1.00 0.79 C ATOM 87 SD MET 11 5.093 1.230 -1.528 1.00 1.08 S ATOM 88 CE MET 11 5.708 0.025 -2.805 1.00 1.05 C ATOM 89 C MET 11 4.190 2.105 2.565 1.00 0.65 C ATOM 90 O MET 11 4.620 3.193 2.271 1.00 0.68 O ATOM 91 N LYS 12 3.468 1.847 3.652 1.00 0.64 N ATOM 92 CA LYS 12 3.039 2.894 4.561 1.00 0.65 C ATOM 93 CB LYS 12 2.028 2.292 5.568 1.00 0.66 C ATOM 94 CG LYS 12 1.395 3.153 6.659 1.00 0.75 C ATOM 95 CD LYS 12 0.494 4.303 6.139 1.00 0.83 C ATOM 96 CE LYS 12 -0.374 5.073 7.212 1.00 1.47 C ATOM 97 NZ LYS 12 0.431 5.899 8.119 1.00 2.06 N ATOM 98 C LYS 12 4.128 3.529 5.334 1.00 0.65 C ATOM 99 O LYS 12 4.113 4.705 5.598 1.00 0.74 O ATOM 100 N LYS 13 5.193 2.760 5.774 1.00 0.62 N ATOM 101 CA LYS 13 6.369 3.346 6.411 1.00 0.70 C ATOM 102 CB LYS 13 7.361 2.252 6.869 1.00 0.85 C ATOM 103 CG LYS 13 6.934 1.484 8.165 1.00 0.97 C ATOM 104 CD LYS 13 7.354 2.272 9.338 1.00 1.67 C ATOM 105 CE LYS 13 7.381 1.516 10.720 1.00 2.30 C ATOM 106 NZ LYS 13 6.091 1.081 11.250 1.00 2.96 N ATOM 107 C LYS 13 7.144 4.377 5.457 1.00 0.70 C ATOM 108 O LYS 13 7.534 5.487 5.797 1.00 0.75 O ATOM 109 N LYS 14 7.281 3.951 4.169 1.00 0.69 N ATOM 110 CA LYS 14 7.947 4.727 3.134 1.00 0.74 C ATOM 111 CB LYS 14 8.040 3.908 1.792 1.00 0.82 C ATOM 112 CG LYS 14 8.657 2.484 1.970 1.00 1.14 C ATOM 113 CD LYS 14 9.291 2.026 0.635 1.00 1.37 C ATOM 114 CE LYS 14 9.788 0.560 0.639 1.00 1.97 C ATOM 115 NZ LYS 14 10.490 0.192 1.849 1.00 2.22 N ATOM 116 C LYS 14 7.258 5.998 2.907 1.00 0.73 C ATOM 117 O LYS 14 7.968 6.994 2.964 1.00 0.86 O ATOM 118 N PHE 15 5.882 6.050 2.755 1.00 0.64 N ATOM 119 CA PHE 15 5.371 7.355 2.468 1.00 0.64 C ATOM 120 CB PHE 15 4.101 7.127 1.587 1.00 0.61 C ATOM 121 CG PHE 15 4.486 6.602 0.190 1.00 0.53 C ATOM 122 CD1 PHE 15 4.039 5.346 -0.124 1.00 1.30 C ATOM 123 CE1 PHE 15 4.245 4.819 -1.430 1.00 1.35 C ATOM 124 CZ PHE 15 5.060 5.492 -2.352 1.00 0.74 C ATOM 125 CD2 PHE 15 5.286 7.308 -0.772 1.00 0.85 C ATOM 126 CE2 PHE 15 5.624 6.714 -2.015 1.00 0.96 C ATOM 127 C PHE 15 4.789 8.054 3.744 1.00 0.66 C ATOM 128 O PHE 15 4.237 9.204 3.551 1.00 0.78 O ATOM 129 N LYS 16 4.935 7.470 4.920 1.00 0.69 N ATOM 130 CA LYS 16 4.574 8.024 6.211 1.00 0.84 C ATOM 131 CB LYS 16 5.304 9.295 6.594 1.00 1.01 C ATOM 132 CG LYS 16 6.835 9.132 6.574 1.00 1.25 C ATOM 133 CD LYS 16 7.569 10.491 6.766 1.00 1.80 C ATOM 134 CE LYS 16 9.100 10.426 6.895 1.00 2.25 C ATOM 135 NZ LYS 16 9.611 11.818 6.899 1.00 2.97 N ATOM 136 C LYS 16 2.968 8.083 6.317 1.00 0.75 C ATOM 137 O LYS 16 2.363 7.249 6.983 1.00 0.91 O ATOM 138 N ASN 17 2.386 9.145 5.685 1.00 0.77 N ATOM 139 CA ASN 17 0.962 9.469 5.682 1.00 0.86 C ATOM 140 CB ASN 17 0.658 10.816 6.388 1.00 1.25 C ATOM 141 CG ASN 17 0.629 10.565 7.863 1.00 1.90 C ATOM 142 OD1 ASN 17 0.912 9.439 8.341 1.00 2.64 O ATOM 143 ND2 ASN 17 0.284 11.628 8.635 1.00 2.37 N ATOM 144 C ASN 17 0.469 9.525 4.256 1.00 0.75 C ATOM 145 O ASN 17 0.927 10.391 3.467 1.00 1.20 O ATOM 146 N CYS 18 -0.566 8.673 3.985 1.00 0.47 N ATOM 147 CA CYS 18 -1.065 8.274 2.671 1.00 0.61 C ATOM 148 CB CYS 18 0.072 7.455 1.943 1.00 0.73 C ATOM 149 SG CYS 18 0.479 5.906 2.745 1.00 0.87 S ATOM 150 C CYS 18 -2.399 7.523 2.922 1.00 0.72 C ATOM 151 O CYS 18 -2.873 7.308 4.042 1.00 0.83 O ATOM 152 N GLU 19 -3.134 7.195 1.801 1.00 0.74 N ATOM 153 CA GLU 19 -4.288 6.414 1.681 1.00 0.79 C ATOM 154 CB GLU 19 -5.589 7.134 1.161 1.00 0.91 C ATOM 155 CG GLU 19 -6.711 6.281 0.611 1.00 1.57 C ATOM 156 CD GLU 19 -8.041 6.981 0.233 1.00 2.11 C ATOM 157 OE1 GLU 19 -8.772 6.216 -0.450 1.00 2.59 O ATOM 158 OE2 GLU 19 -8.328 8.116 0.601 1.00 2.54 O ATOM 159 C GLU 19 -3.981 5.238 0.756 1.00 0.73 C ATOM 160 O GLU 19 -3.479 5.386 -0.349 1.00 0.79 O ATOM 161 N VAL 20 -4.025 3.979 1.335 1.00 0.81 N ATOM 162 CA VAL 20 -3.595 2.842 0.594 1.00 0.76 C ATOM 163 CB VAL 20 -2.570 1.968 1.390 1.00 0.82 C ATOM 164 CG1 VAL 20 -1.911 0.987 0.504 1.00 1.34 C ATOM 165 CG2 VAL 20 -1.518 2.952 1.934 1.00 1.54 C ATOM 166 C VAL 20 -4.805 1.971 0.310 1.00 0.77 C ATOM 167 O VAL 20 -5.460 1.527 1.281 1.00 0.96 O ATOM 168 N ARG 21 -5.174 1.698 -0.947 1.00 0.68 N ATOM 169 CA ARG 21 -6.368 1.018 -1.316 1.00 0.68 C ATOM 170 CB ARG 21 -7.153 1.759 -2.498 1.00 0.79 C ATOM 171 CG ARG 21 -7.819 3.133 -2.204 1.00 1.11 C ATOM 172 CD ARG 21 -8.301 3.996 -3.463 1.00 1.43 C ATOM 173 NE ARG 21 -8.623 5.358 -3.028 1.00 1.16 N ATOM 174 CZ ARG 21 -9.027 6.374 -3.701 1.00 1.49 C ATOM 175 NH1 ARG 21 -9.164 7.557 -3.164 1.00 1.26 N ATOM 176 NH2 ARG 21 -9.152 6.317 -5.023 1.00 2.35 N ATOM 177 C ARG 21 -6.053 -0.297 -1.833 1.00 0.61 C ATOM 178 O ARG 21 -5.307 -0.383 -2.805 1.00 0.63 O ATOM 179 N CYS 22 -6.536 -1.344 -1.146 1.00 0.61 N ATOM 180 CA CYS 22 -6.213 -2.695 -1.460 1.00 0.63 C ATOM 181 CB CYS 22 -5.381 -3.414 -0.230 1.00 0.72 C ATOM 182 SG CYS 22 -3.921 -2.376 -0.082 1.00 1.18 S ATOM 183 C CYS 22 -7.378 -3.607 -1.670 1.00 0.73 C ATOM 184 O CYS 22 -8.123 -3.859 -0.736 1.00 0.90 O ATOM 185 N ASP 23 -7.509 -4.260 -2.870 1.00 0.76 N ATOM 186 CA ASP 23 -8.394 -5.298 -3.064 1.00 0.90 C ATOM 187 CB ASP 23 -8.511 -5.787 -4.584 1.00 1.07 C ATOM 188 CG ASP 23 -9.206 -4.756 -5.390 1.00 1.45 C ATOM 189 OD1 ASP 23 -9.964 -3.915 -4.822 1.00 2.05 O ATOM 190 OD2 ASP 23 -9.129 -4.878 -6.656 1.00 1.88 O ATOM 191 C ASP 23 -8.153 -6.469 -2.125 1.00 1.03 C ATOM 192 O ASP 23 -9.086 -7.092 -1.620 1.00 1.61 O ATOM 193 N GLU 24 -6.920 -6.971 -1.962 1.00 1.05 N ATOM 194 CA GLU 24 -6.479 -8.051 -1.179 1.00 1.28 C ATOM 195 CB GLU 24 -6.966 -8.045 0.261 1.00 1.34 C ATOM 196 CG GLU 24 -6.250 -6.950 1.155 1.00 1.49 C ATOM 197 CD GLU 24 -6.664 -7.032 2.602 1.00 1.63 C ATOM 198 OE1 GLU 24 -7.628 -6.342 3.028 1.00 1.81 O ATOM 199 OE2 GLU 24 -6.162 -7.917 3.277 1.00 2.14 O ATOM 200 C GLU 24 -6.587 -9.402 -1.916 1.00 1.44 C ATOM 201 O GLU 24 -7.227 -10.360 -1.494 1.00 1.50 O ATOM 202 N SER 25 -5.818 -9.415 -3.001 1.00 1.83 N ATOM 203 CA SER 25 -5.664 -10.502 -3.967 1.00 2.25 C ATOM 204 CB SER 25 -7.053 -10.981 -4.568 1.00 2.31 C ATOM 205 OG SER 25 -6.924 -12.059 -5.448 1.00 2.64 O ATOM 206 C SER 25 -4.760 -10.128 -5.069 1.00 2.49 C ATOM 207 O SER 25 -4.924 -9.075 -5.600 1.00 2.91 O ATOM 208 N ASN 26 -3.702 -10.903 -5.427 1.00 2.52 N ATOM 209 CA ASN 26 -2.872 -10.740 -6.595 1.00 2.69 C ATOM 210 CB ASN 26 -3.779 -10.908 -7.880 1.00 2.65 C ATOM 211 CG ASN 26 -4.564 -12.202 -7.845 1.00 2.89 C ATOM 212 OD1 ASN 26 -5.763 -12.139 -7.988 1.00 3.08 O ATOM 213 ND2 ASN 26 -3.924 -13.407 -7.487 1.00 3.38 N ATOM 214 C ASN 26 -1.924 -9.557 -6.708 1.00 2.51 C ATOM 215 O ASN 26 -1.332 -9.287 -7.757 1.00 2.57 O ATOM 216 N HIS 27 -1.819 -8.879 -5.559 1.00 2.38 N ATOM 217 CA HIS 27 -0.809 -7.924 -5.196 1.00 2.36 C ATOM 218 CB HIS 27 0.586 -8.365 -5.706 1.00 2.70 C ATOM 219 ND1 HIS 27 1.204 -10.105 -3.822 1.00 3.31 N ATOM 220 CG HIS 27 0.860 -9.765 -5.147 1.00 3.12 C ATOM 221 CE1 HIS 27 1.267 -11.399 -3.875 1.00 3.72 C ATOM 222 NE2 HIS 27 1.050 -11.925 -5.110 1.00 3.98 N ATOM 223 CD2 HIS 27 0.729 -10.878 -5.903 1.00 3.76 C ATOM 224 C HIS 27 -1.130 -6.545 -5.652 1.00 2.02 C ATOM 225 O HIS 27 -0.296 -5.678 -5.883 1.00 2.24 O ATOM 226 N CYS 28 -2.442 -6.253 -5.856 1.00 1.57 N ATOM 227 CA CYS 28 -2.845 -4.982 -6.312 1.00 1.28 C ATOM 228 CB CYS 28 -4.219 -5.013 -7.094 1.00 1.28 C ATOM 229 SG CYS 28 -4.247 -6.182 -8.521 1.00 1.72 S ATOM 230 C CYS 28 -2.974 -4.000 -5.180 1.00 1.05 C ATOM 231 O CYS 28 -3.545 -4.421 -4.182 1.00 1.02 O ATOM 232 N VAL 29 -2.414 -2.797 -5.387 1.00 0.95 N ATOM 233 CA VAL 29 -2.303 -1.793 -4.378 1.00 0.82 C ATOM 234 CB VAL 29 -0.890 -1.850 -3.601 1.00 0.99 C ATOM 235 CG1 VAL 29 -0.958 -0.902 -2.410 1.00 0.99 C ATOM 236 CG2 VAL 29 -0.529 -3.249 -3.227 1.00 1.14 C ATOM 237 C VAL 29 -2.363 -0.467 -5.039 1.00 0.80 C ATOM 238 O VAL 29 -1.655 -0.346 -5.981 1.00 0.92 O ATOM 239 N GLU 30 -3.079 0.545 -4.550 1.00 0.75 N ATOM 240 CA GLU 30 -2.958 1.870 -5.043 1.00 0.72 C ATOM 241 CB GLU 30 -4.135 2.301 -5.912 1.00 0.76 C ATOM 242 CG GLU 30 -4.034 3.732 -6.444 1.00 1.28 C ATOM 243 CD GLU 30 -5.286 4.120 -7.218 1.00 1.19 C ATOM 244 OE1 GLU 30 -5.715 3.263 -8.097 1.00 1.71 O ATOM 245 OE2 GLU 30 -5.816 5.203 -7.016 1.00 1.52 O ATOM 246 C GLU 30 -2.871 2.747 -3.829 1.00 0.68 C ATOM 247 O GLU 30 -3.700 2.717 -2.924 1.00 0.67 O ATOM 248 N VAL 31 -1.767 3.639 -3.835 1.00 0.71 N ATOM 249 CA VAL 31 -1.402 4.602 -2.853 1.00 0.68 C ATOM 250 CB VAL 31 0.078 4.440 -2.460 1.00 0.83 C ATOM 251 CG1 VAL 31 0.424 5.562 -1.360 1.00 0.90 C ATOM 252 CG2 VAL 31 0.438 3.041 -1.838 1.00 1.00 C ATOM 253 C VAL 31 -1.737 6.017 -3.391 1.00 0.57 C ATOM 254 O VAL 31 -1.165 6.473 -4.400 1.00 0.61 O ATOM 255 N ARG 32 -2.570 6.776 -2.612 1.00 0.57 N ATOM 256 CA ARG 32 -2.771 8.112 -2.832 1.00 0.55 C ATOM 257 CB ARG 32 -4.302 8.406 -2.632 1.00 0.66 C ATOM 258 CG ARG 32 -5.394 7.438 -3.149 1.00 0.73 C ATOM 259 CD ARG 32 -5.357 7.408 -4.669 1.00 0.68 C ATOM 260 NE ARG 32 -5.992 8.638 -5.128 1.00 0.99 N ATOM 261 CZ ARG 32 -6.544 8.936 -6.291 1.00 1.26 C ATOM 262 NH1 ARG 32 -7.144 10.114 -6.333 1.00 1.86 N ATOM 263 NH2 ARG 32 -6.623 7.997 -7.225 1.00 1.63 N ATOM 264 C ARG 32 -1.901 8.678 -1.730 1.00 0.60 C ATOM 265 O ARG 32 -1.791 8.162 -0.610 1.00 0.71 O ATOM 266 N CYS 33 -1.220 9.795 -2.039 1.00 0.66 N ATOM 267 CA CYS 33 -0.320 10.434 -1.170 1.00 0.79 C ATOM 268 CB CYS 33 1.062 9.673 -1.310 1.00 0.94 C ATOM 269 SG CYS 33 2.351 10.187 -0.196 1.00 1.65 S ATOM 270 C CYS 33 -0.197 11.887 -1.723 1.00 0.72 C ATOM 271 O CYS 33 -0.664 12.171 -2.839 1.00 0.68 O ATOM 272 N SER 34 0.382 12.838 -0.932 1.00 0.89 N ATOM 273 CA SER 34 0.486 14.214 -1.298 1.00 1.00 C ATOM 274 CB SER 34 1.354 15.124 -0.360 1.00 1.35 C ATOM 275 OG SER 34 2.632 14.468 -0.289 1.00 2.03 O ATOM 276 C SER 34 0.992 14.461 -2.688 1.00 0.96 C ATOM 277 O SER 34 2.118 14.253 -3.054 1.00 1.32 O ATOM 278 N ASP 35 0.059 14.894 -3.589 1.00 1.32 N ATOM 279 CA ASP 35 0.187 15.149 -5.035 1.00 1.42 C ATOM 280 CB ASP 35 0.714 16.635 -5.363 1.00 1.69 C ATOM 281 CG ASP 35 -0.063 17.686 -4.575 1.00 2.36 C ATOM 282 OD1 ASP 35 0.420 18.773 -4.408 1.00 2.50 O ATOM 283 OD2 ASP 35 -1.260 17.452 -4.194 1.00 3.06 O ATOM 284 C ASP 35 0.863 14.084 -5.822 1.00 1.41 C ATOM 285 O ASP 35 1.541 14.436 -6.826 1.00 2.05 O ATOM 286 N THR 36 0.706 12.820 -5.494 1.00 1.12 N ATOM 287 CA THR 36 1.280 11.714 -6.265 1.00 1.13 C ATOM 288 CB THR 36 2.735 11.415 -5.982 1.00 1.51 C ATOM 289 OG1 THR 36 3.248 10.727 -7.128 1.00 1.83 O ATOM 290 CG2 THR 36 2.988 10.669 -4.658 1.00 2.00 C ATOM 291 C THR 36 0.545 10.409 -6.052 1.00 0.99 C ATOM 292 O THR 36 -0.048 10.236 -5.006 1.00 1.30 O ATOM 293 N LYS 37 0.571 9.534 -7.070 1.00 1.06 N ATOM 294 CA LYS 37 -0.002 8.206 -7.005 1.00 1.10 C ATOM 295 CB LYS 37 -1.323 8.068 -7.889 1.00 1.51 C ATOM 296 CG LYS 37 -2.398 9.188 -7.615 1.00 2.07 C ATOM 297 CD LYS 37 -3.196 9.389 -8.903 1.00 2.44 C ATOM 298 CE LYS 37 -4.216 10.519 -9.008 1.00 2.90 C ATOM 299 NZ LYS 37 -3.677 11.789 -8.639 1.00 2.93 N ATOM 300 C LYS 37 1.044 7.126 -7.378 1.00 1.03 C ATOM 301 O LYS 37 1.773 7.211 -8.358 1.00 1.45 O ATOM 302 N TYR 38 1.179 6.069 -6.537 1.00 0.96 N ATOM 303 CA TYR 38 2.050 4.961 -6.774 1.00 0.91 C ATOM 304 CB TYR 38 2.953 4.647 -5.548 1.00 0.97 C ATOM 305 CG TYR 38 4.235 3.842 -5.911 1.00 0.92 C ATOM 306 CD1 TYR 38 5.441 4.602 -6.114 1.00 1.14 C ATOM 307 CE1 TYR 38 6.675 4.011 -6.346 1.00 1.21 C ATOM 308 CZ TYR 38 6.802 2.658 -6.294 1.00 1.06 C ATOM 309 OH TYR 38 8.036 2.070 -6.471 1.00 1.26 O ATOM 310 CD2 TYR 38 4.390 2.439 -5.829 1.00 0.88 C ATOM 311 CE2 TYR 38 5.613 1.888 -6.024 1.00 0.92 C ATOM 312 C TYR 38 1.079 3.808 -6.948 1.00 0.95 C ATOM 313 O TYR 38 0.100 3.710 -6.185 1.00 1.03 O ATOM 314 N THR 39 1.185 2.953 -7.959 1.00 1.04 N ATOM 315 CA THR 39 0.181 1.854 -8.086 1.00 1.22 C ATOM 316 CB THR 39 -1.027 2.253 -8.935 1.00 1.75 C ATOM 317 OG1 THR 39 -2.029 1.200 -9.103 1.00 2.53 O ATOM 318 CG2 THR 39 -0.593 2.813 -10.306 1.00 1.30 C ATOM 319 C THR 39 0.823 0.582 -8.592 1.00 1.06 C ATOM 320 O THR 39 1.777 0.468 -9.337 1.00 1.11 O ATOM 321 N LEU 40 0.226 -0.506 -8.146 1.00 1.01 N ATOM 322 CA LEU 40 0.583 -1.920 -8.510 1.00 1.04 C ATOM 323 CB LEU 40 1.192 -2.715 -7.275 1.00 1.03 C ATOM 324 CG LEU 40 2.244 -1.843 -6.495 1.00 0.83 C ATOM 325 CD1 LEU 40 2.831 -2.542 -5.268 1.00 1.15 C ATOM 326 CD2 LEU 40 3.400 -1.489 -7.401 1.00 1.57 C ATOM 327 C LEU 40 -0.704 -2.570 -8.942 1.00 1.11 C ATOM 328 O LEU 40 -0.838 -3.800 -8.923 1.00 1.02 O ATOM 329 N CYS 41 -1.748 -1.786 -9.264 1.00 1.82 N ATOM 330 CA CYS 41 -3.023 -2.328 -9.883 1.00 2.12 C ATOM 331 CB CYS 41 -4.215 -1.355 -9.569 1.00 3.05 C ATOM 332 SG CYS 41 -4.397 -0.902 -7.817 1.00 3.51 S ATOM 333 C CYS 41 -2.860 -2.603 -11.446 1.00 2.48 C ATOM 334 OXT CYS 41 -1.944 -3.468 -11.880 1.00 2.39 ATOM 335 O CYS 41 -3.578 -1.918 -12.156 1.00 3.30 O TER 335 O CYS 41 END