####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS112_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 3.00 3.00 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 17 - 41 1.90 4.35 LCS_AVERAGE: 56.22 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.91 4.33 LONGEST_CONTINUOUS_SEGMENT: 16 18 - 33 0.87 4.60 LCS_AVERAGE: 33.97 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 20 41 3 3 5 6 11 18 23 25 29 38 40 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 16 20 41 10 15 16 19 21 26 30 36 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 16 20 41 12 15 16 19 21 29 35 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 16 20 41 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 16 20 41 3 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 16 20 41 6 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 16 25 41 3 6 14 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 16 25 41 5 12 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 16 25 41 5 12 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 16 25 41 5 12 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 16 25 41 5 10 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 16 25 41 5 10 16 18 21 28 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 16 25 41 4 12 16 18 21 28 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 16 25 41 4 12 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 16 25 41 4 10 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 16 25 41 4 11 16 18 21 28 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 16 25 41 6 12 16 18 21 28 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 16 25 41 6 12 16 18 21 28 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 16 25 41 6 12 16 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 16 25 41 6 12 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 16 25 41 6 12 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 16 25 41 6 12 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 16 25 41 6 12 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 13 25 41 3 10 15 18 21 25 34 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 7 25 41 3 6 11 17 20 23 25 26 34 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 25 41 4 6 13 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 25 41 4 6 11 16 20 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 25 41 4 7 13 17 20 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 25 41 4 6 13 16 20 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 25 41 4 9 15 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 25 41 3 9 14 18 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 63.39 ( 33.97 56.22 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 15 16 19 21 31 36 38 39 39 40 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 36.59 39.02 46.34 51.22 75.61 87.80 92.68 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.50 0.68 1.06 1.41 2.37 2.57 2.67 2.74 2.74 2.87 3.00 3.00 3.00 3.00 3.00 3.00 3.00 3.00 3.00 GDT RMS_ALL_AT 4.04 4.17 3.96 3.76 3.77 3.06 3.06 3.04 3.02 3.02 3.02 3.00 3.00 3.00 3.00 3.00 3.00 3.00 3.00 3.00 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 6.809 0 0.632 0.948 10.516 0.000 0.000 10.516 LGA Q 2 Q 2 4.958 0 0.243 1.032 7.401 4.545 2.222 7.401 LGA E 3 E 3 2.989 0 0.065 1.589 7.890 23.182 13.535 6.685 LGA T 4 T 4 2.904 0 0.054 1.327 4.276 25.000 23.117 4.276 LGA R 5 R 5 3.503 0 0.069 0.962 7.621 16.364 6.612 7.621 LGA K 6 K 6 2.879 0 0.035 1.033 3.946 30.455 24.848 3.029 LGA K 7 K 7 1.761 0 0.124 1.020 5.052 47.727 37.576 5.052 LGA C 8 C 8 1.947 0 0.054 0.078 2.299 47.727 44.545 2.299 LGA T 9 T 9 2.549 0 0.059 0.092 3.311 35.455 29.351 3.245 LGA E 10 E 10 2.082 0 0.062 0.381 2.726 41.364 42.828 1.173 LGA M 11 M 11 1.540 0 0.066 0.468 1.742 50.909 58.409 1.477 LGA K 12 K 12 2.064 0 0.070 0.798 3.964 41.364 35.556 3.964 LGA K 13 K 13 2.510 0 0.074 0.625 3.969 32.727 24.848 3.192 LGA K 14 K 14 2.015 0 0.061 0.811 5.444 38.182 31.717 5.444 LGA F 15 F 15 2.289 0 0.285 0.298 4.161 27.273 35.372 2.360 LGA K 16 K 16 2.750 0 0.317 1.549 8.188 45.455 22.626 8.188 LGA N 17 N 17 1.583 0 0.613 1.131 5.628 63.182 40.000 2.395 LGA C 18 C 18 2.626 0 0.057 0.836 4.978 30.000 24.848 4.978 LGA E 19 E 19 2.985 0 0.182 1.158 8.176 35.909 18.384 8.176 LGA V 20 V 20 2.758 0 0.038 0.072 3.382 22.727 20.779 3.140 LGA R 21 R 21 2.586 0 0.071 1.447 7.081 30.000 22.975 5.510 LGA C 22 C 22 3.222 0 0.090 0.117 4.038 22.727 19.091 4.038 LGA D 23 D 23 3.163 0 0.270 1.073 6.602 11.818 7.727 4.778 LGA E 24 E 24 2.294 0 0.190 0.700 4.209 32.727 31.111 2.939 LGA S 25 S 25 2.676 0 0.109 0.732 3.474 25.455 27.879 2.438 LGA N 26 N 26 3.509 0 0.055 0.957 6.139 11.364 8.182 5.825 LGA H 27 H 27 3.746 0 0.054 0.439 5.186 12.727 6.545 5.036 LGA C 28 C 28 3.266 0 0.051 0.143 4.052 25.455 19.697 4.052 LGA V 29 V 29 2.558 0 0.080 0.128 3.128 25.000 24.675 2.786 LGA E 30 E 30 1.849 0 0.089 0.867 4.756 50.909 37.374 4.756 LGA V 31 V 31 1.830 0 0.157 0.215 2.551 58.636 48.312 2.413 LGA R 32 R 32 1.833 0 0.159 1.353 5.150 39.545 27.769 4.673 LGA C 33 C 33 2.344 0 0.488 1.005 2.918 41.364 40.606 1.636 LGA S 34 S 34 4.247 0 0.284 0.315 5.660 4.091 3.030 4.970 LGA D 35 D 35 6.031 0 0.663 0.853 7.991 0.000 0.000 7.991 LGA T 36 T 36 3.288 0 0.197 1.068 3.834 26.818 23.377 2.961 LGA K 37 K 37 3.297 0 0.140 1.406 7.052 10.000 5.051 6.200 LGA Y 38 Y 38 2.754 0 0.079 1.158 7.061 38.636 21.970 7.061 LGA T 39 T 39 2.962 0 0.046 0.078 5.564 30.000 17.403 5.564 LGA L 40 L 40 0.815 0 0.047 0.970 3.984 62.727 44.545 3.984 LGA C 41 C 41 1.919 0 0.540 1.193 3.505 55.000 42.338 3.505 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 3.000 3.009 3.703 31.086 24.801 14.279 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 38 2.67 68.902 69.403 1.373 LGA_LOCAL RMSD: 2.668 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.035 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 3.000 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.358203 * X + -0.624632 * Y + -0.693921 * Z + 70.932693 Y_new = 0.930879 * X + -0.181778 * Y + -0.316894 * Z + -17.836153 Z_new = 0.071802 * X + -0.759468 * Y + 0.646570 * Z + 8.049638 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.938132 -0.071864 -0.865522 [DEG: 111.0468 -4.1175 -49.5907 ] ZXZ: -1.142408 0.867717 3.047330 [DEG: -65.4552 49.7165 174.5992 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS112_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS112_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 38 2.67 69.403 3.00 REMARK ---------------------------------------------------------- MOLECULE T0955TS112_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -2.158 -12.354 3.531 1.00 1.64 N ATOM 2 CA SER 1 -2.314 -11.179 4.511 1.00 1.22 C ATOM 3 CB SER 1 -3.142 -11.686 5.694 1.00 1.53 C ATOM 4 OG SER 1 -3.475 -10.564 6.490 1.00 1.96 O ATOM 5 C SER 1 -0.986 -10.452 4.916 1.00 1.05 C ATOM 6 O SER 1 -0.849 -9.199 4.951 1.00 1.02 O ATOM 7 N GLN 2 0.010 -11.266 5.385 1.00 1.07 N ATOM 8 CA GLN 2 1.177 -10.792 6.050 1.00 1.03 C ATOM 9 CB GLN 2 1.934 -12.013 6.852 1.00 1.21 C ATOM 10 CG GLN 2 3.299 -11.756 7.406 1.00 1.95 C ATOM 11 CD GLN 2 3.677 -12.885 8.326 1.00 2.28 C ATOM 12 OE1 GLN 2 4.286 -13.950 8.041 1.00 2.68 O ATOM 13 NE2 GLN 2 3.364 -12.772 9.623 1.00 2.61 N ATOM 14 C GLN 2 2.171 -10.008 5.150 1.00 0.94 C ATOM 15 O GLN 2 2.697 -8.988 5.566 1.00 0.95 O ATOM 16 N GLU 3 2.320 -10.386 3.841 1.00 0.93 N ATOM 17 CA GLU 3 3.020 -9.657 2.893 1.00 0.90 C ATOM 18 CB GLU 3 3.288 -10.363 1.551 1.00 0.99 C ATOM 19 CG GLU 3 4.227 -11.553 1.604 1.00 1.10 C ATOM 20 CD GLU 3 5.672 -11.083 1.606 1.00 1.92 C ATOM 21 OE1 GLU 3 6.435 -11.148 0.678 1.00 2.49 O ATOM 22 OE2 GLU 3 6.100 -10.564 2.723 1.00 2.74 O ATOM 23 C GLU 3 2.436 -8.277 2.556 1.00 0.81 C ATOM 24 O GLU 3 3.165 -7.265 2.412 1.00 0.83 O ATOM 25 N THR 4 1.108 -8.245 2.337 1.00 0.76 N ATOM 26 CA THR 4 0.392 -7.059 1.918 1.00 0.67 C ATOM 27 CB THR 4 -0.959 -7.353 1.361 1.00 0.65 C ATOM 28 OG1 THR 4 -1.459 -8.601 1.821 1.00 1.16 O ATOM 29 CG2 THR 4 -0.776 -7.369 -0.168 1.00 0.91 C ATOM 30 C THR 4 0.438 -5.994 2.968 1.00 0.65 C ATOM 31 O THR 4 0.550 -4.787 2.784 1.00 0.66 O ATOM 32 N ARG 5 0.234 -6.379 4.294 1.00 0.72 N ATOM 33 CA ARG 5 0.508 -5.468 5.405 1.00 0.74 C ATOM 34 CB ARG 5 -0.126 -5.967 6.770 1.00 0.87 C ATOM 35 CG ARG 5 -1.690 -6.098 6.929 1.00 0.94 C ATOM 36 CD ARG 5 -2.120 -7.052 8.103 1.00 1.06 C ATOM 37 NE ARG 5 -3.439 -6.540 8.671 1.00 1.29 N ATOM 38 CZ ARG 5 -4.508 -7.265 9.117 1.00 1.45 C ATOM 39 NH1 ARG 5 -5.611 -6.549 9.366 1.00 1.66 N ATOM 40 NH2 ARG 5 -4.558 -8.555 9.297 1.00 1.62 N ATOM 41 C ARG 5 1.965 -5.022 5.641 1.00 0.73 C ATOM 42 O ARG 5 2.177 -3.901 6.093 1.00 0.78 O ATOM 43 N LYS 6 3.000 -5.890 5.352 1.00 0.73 N ATOM 44 CA LYS 6 4.338 -5.476 5.259 1.00 0.74 C ATOM 45 CB LYS 6 5.304 -6.705 4.982 1.00 0.81 C ATOM 46 CG LYS 6 5.491 -7.554 6.204 1.00 0.93 C ATOM 47 CD LYS 6 5.985 -9.002 5.854 1.00 1.18 C ATOM 48 CE LYS 6 7.237 -9.014 5.012 1.00 1.90 C ATOM 49 NZ LYS 6 7.825 -10.380 4.618 1.00 2.61 N ATOM 50 C LYS 6 4.586 -4.356 4.233 1.00 0.72 C ATOM 51 O LYS 6 5.200 -3.335 4.511 1.00 0.75 O ATOM 52 N LYS 7 4.100 -4.438 3.007 1.00 0.72 N ATOM 53 CA LYS 7 3.935 -3.393 2.011 1.00 0.72 C ATOM 54 CB LYS 7 3.373 -4.071 0.752 1.00 0.78 C ATOM 55 CG LYS 7 4.376 -4.916 -0.134 1.00 0.90 C ATOM 56 CD LYS 7 5.484 -4.011 -0.774 1.00 1.00 C ATOM 57 CE LYS 7 6.825 -4.583 -0.450 1.00 1.22 C ATOM 58 NZ LYS 7 7.949 -3.766 -0.978 1.00 1.20 N ATOM 59 C LYS 7 3.159 -2.191 2.479 1.00 0.70 C ATOM 60 O LYS 7 3.684 -1.084 2.441 1.00 0.75 O ATOM 61 N CYS 8 1.940 -2.388 2.976 1.00 0.67 N ATOM 62 CA CYS 8 1.129 -1.324 3.665 1.00 0.71 C ATOM 63 CB CYS 8 -0.267 -1.768 4.129 1.00 0.76 C ATOM 64 SG CYS 8 -1.387 -0.475 4.767 1.00 1.37 S ATOM 65 C CYS 8 1.919 -0.460 4.626 1.00 0.67 C ATOM 66 O CYS 8 2.032 0.738 4.562 1.00 0.67 O ATOM 67 N THR 9 2.609 -1.094 5.566 1.00 0.69 N ATOM 68 CA THR 9 3.435 -0.501 6.588 1.00 0.72 C ATOM 69 CB THR 9 3.964 -1.545 7.588 1.00 0.83 C ATOM 70 OG1 THR 9 2.950 -2.323 8.160 1.00 0.92 O ATOM 71 CG2 THR 9 4.603 -0.801 8.793 1.00 1.43 C ATOM 72 C THR 9 4.568 0.202 5.922 1.00 0.69 C ATOM 73 O THR 9 4.890 1.286 6.412 1.00 0.70 O ATOM 74 N GLU 10 5.221 -0.393 4.909 1.00 0.71 N ATOM 75 CA GLU 10 6.264 0.154 4.131 1.00 0.72 C ATOM 76 CB GLU 10 6.838 -0.838 3.146 1.00 0.84 C ATOM 77 CG GLU 10 7.897 -0.263 2.230 1.00 1.24 C ATOM 78 CD GLU 10 8.800 -1.330 1.624 1.00 1.30 C ATOM 79 OE1 GLU 10 8.765 -1.559 0.377 1.00 1.98 O ATOM 80 OE2 GLU 10 9.665 -1.810 2.410 1.00 1.43 O ATOM 81 C GLU 10 6.006 1.471 3.462 1.00 0.70 C ATOM 82 O GLU 10 6.706 2.469 3.621 1.00 0.74 O ATOM 83 N MET 11 4.821 1.486 2.787 1.00 0.69 N ATOM 84 CA MET 11 4.309 2.594 2.021 1.00 0.68 C ATOM 85 CB MET 11 3.015 2.331 1.200 1.00 0.75 C ATOM 86 CG MET 11 3.266 1.269 0.207 1.00 0.79 C ATOM 87 SD MET 11 4.761 1.495 -0.971 1.00 1.08 S ATOM 88 CE MET 11 5.359 -0.177 -1.102 1.00 1.05 C ATOM 89 C MET 11 3.931 3.769 3.012 1.00 0.65 C ATOM 90 O MET 11 4.193 4.914 2.694 1.00 0.68 O ATOM 91 N LYS 12 3.459 3.439 4.230 1.00 0.64 N ATOM 92 CA LYS 12 3.276 4.382 5.300 1.00 0.65 C ATOM 93 CB LYS 12 2.471 3.705 6.440 1.00 0.66 C ATOM 94 CG LYS 12 0.974 3.710 6.011 1.00 0.75 C ATOM 95 CD LYS 12 0.135 2.855 6.919 1.00 0.83 C ATOM 96 CE LYS 12 -1.368 2.848 6.617 1.00 1.47 C ATOM 97 NZ LYS 12 -1.899 4.215 6.857 1.00 2.06 N ATOM 98 C LYS 12 4.545 4.965 5.881 1.00 0.65 C ATOM 99 O LYS 12 4.714 6.174 6.098 1.00 0.74 O ATOM 100 N LYS 13 5.579 4.141 6.123 1.00 0.62 N ATOM 101 CA LYS 13 6.930 4.679 6.305 1.00 0.70 C ATOM 102 CB LYS 13 7.984 3.540 6.554 1.00 0.85 C ATOM 103 CG LYS 13 7.834 2.853 7.896 1.00 0.97 C ATOM 104 CD LYS 13 8.653 1.608 8.072 1.00 1.67 C ATOM 105 CE LYS 13 8.487 0.954 9.445 1.00 2.30 C ATOM 106 NZ LYS 13 8.865 -0.493 9.481 1.00 2.96 N ATOM 107 C LYS 13 7.518 5.583 5.184 1.00 0.70 C ATOM 108 O LYS 13 8.162 6.552 5.437 1.00 0.75 O ATOM 109 N LYS 14 7.442 5.146 3.929 1.00 0.69 N ATOM 110 CA LYS 14 7.805 5.890 2.781 1.00 0.74 C ATOM 111 CB LYS 14 7.648 5.039 1.468 1.00 0.82 C ATOM 112 CG LYS 14 8.568 3.871 1.280 1.00 1.14 C ATOM 113 CD LYS 14 8.223 2.905 0.111 1.00 1.37 C ATOM 114 CE LYS 14 8.467 3.301 -1.304 1.00 1.97 C ATOM 115 NZ LYS 14 9.849 2.871 -1.640 1.00 2.22 N ATOM 116 C LYS 14 7.165 7.294 2.550 1.00 0.73 C ATOM 117 O LYS 14 7.806 8.221 2.222 1.00 0.86 O ATOM 118 N PHE 15 5.809 7.393 2.720 1.00 0.64 N ATOM 119 CA PHE 15 5.076 8.617 2.411 1.00 0.64 C ATOM 120 CB PHE 15 4.068 8.465 1.301 1.00 0.61 C ATOM 121 CG PHE 15 4.603 7.586 0.190 1.00 0.53 C ATOM 122 CD1 PHE 15 5.645 8.110 -0.569 1.00 1.30 C ATOM 123 CE1 PHE 15 6.222 7.469 -1.640 1.00 1.35 C ATOM 124 CZ PHE 15 5.710 6.231 -2.069 1.00 0.74 C ATOM 125 CD2 PHE 15 4.115 6.302 -0.221 1.00 0.85 C ATOM 126 CE2 PHE 15 4.735 5.645 -1.284 1.00 0.96 C ATOM 127 C PHE 15 4.479 9.321 3.537 1.00 0.66 C ATOM 128 O PHE 15 3.874 10.353 3.300 1.00 0.78 O ATOM 129 N LYS 16 4.558 8.729 4.785 1.00 0.69 N ATOM 130 CA LYS 16 4.105 9.332 5.987 1.00 0.84 C ATOM 131 CB LYS 16 4.532 10.790 6.341 1.00 1.01 C ATOM 132 CG LYS 16 6.045 11.039 6.354 1.00 1.25 C ATOM 133 CD LYS 16 6.615 12.454 6.731 1.00 1.80 C ATOM 134 CE LYS 16 8.120 12.690 6.714 1.00 2.25 C ATOM 135 NZ LYS 16 8.638 12.767 5.374 1.00 2.97 N ATOM 136 C LYS 16 2.579 9.085 6.038 1.00 0.75 C ATOM 137 O LYS 16 2.003 8.187 6.727 1.00 0.91 O ATOM 138 N ASN 17 1.792 9.798 5.264 1.00 0.77 N ATOM 139 CA ASN 17 0.360 9.643 5.136 1.00 0.86 C ATOM 140 CB ASN 17 -0.374 10.983 5.129 1.00 1.25 C ATOM 141 CG ASN 17 -0.146 11.579 6.485 1.00 1.90 C ATOM 142 OD1 ASN 17 0.552 12.568 6.621 1.00 2.64 O ATOM 143 ND2 ASN 17 -0.924 11.057 7.420 1.00 2.37 N ATOM 144 C ASN 17 0.024 8.952 3.787 1.00 0.75 C ATOM 145 O ASN 17 0.237 9.543 2.759 1.00 1.20 O ATOM 146 N CYS 18 -0.270 7.682 3.885 1.00 0.47 N ATOM 147 CA CYS 18 -0.636 6.757 2.761 1.00 0.61 C ATOM 148 CB CYS 18 0.737 6.162 2.288 1.00 0.73 C ATOM 149 SG CYS 18 0.659 4.990 0.934 1.00 0.87 S ATOM 150 C CYS 18 -1.522 5.580 3.166 1.00 0.72 C ATOM 151 O CYS 18 -1.457 5.080 4.259 1.00 0.83 O ATOM 152 N GLU 19 -2.474 5.271 2.272 1.00 0.74 N ATOM 153 CA GLU 19 -3.560 4.319 2.511 1.00 0.79 C ATOM 154 CB GLU 19 -5.041 4.819 2.713 1.00 0.91 C ATOM 155 CG GLU 19 -5.161 5.465 4.185 1.00 1.57 C ATOM 156 CD GLU 19 -5.338 4.572 5.413 1.00 2.11 C ATOM 157 OE1 GLU 19 -6.392 3.880 5.366 1.00 2.59 O ATOM 158 OE2 GLU 19 -4.523 4.490 6.356 1.00 2.54 O ATOM 159 C GLU 19 -3.408 3.341 1.329 1.00 0.73 C ATOM 160 O GLU 19 -3.532 3.645 0.107 1.00 0.79 O ATOM 161 N VAL 20 -3.207 2.070 1.679 1.00 0.81 N ATOM 162 CA VAL 20 -2.974 1.121 0.660 1.00 0.76 C ATOM 163 CB VAL 20 -1.700 0.337 1.025 1.00 0.82 C ATOM 164 CG1 VAL 20 -1.307 -0.673 -0.070 1.00 1.34 C ATOM 165 CG2 VAL 20 -0.504 1.235 1.341 1.00 1.54 C ATOM 166 C VAL 20 -4.182 0.199 0.598 1.00 0.77 C ATOM 167 O VAL 20 -4.525 -0.533 1.556 1.00 0.96 O ATOM 168 N ARG 21 -4.783 0.253 -0.593 1.00 0.68 N ATOM 169 CA ARG 21 -5.963 -0.511 -0.888 1.00 0.68 C ATOM 170 CB ARG 21 -6.975 0.271 -1.731 1.00 0.79 C ATOM 171 CG ARG 21 -7.606 1.644 -1.225 1.00 1.11 C ATOM 172 CD ARG 21 -6.544 2.743 -1.123 1.00 1.43 C ATOM 173 NE ARG 21 -7.209 4.101 -1.296 1.00 1.16 N ATOM 174 CZ ARG 21 -7.818 4.792 -0.342 1.00 1.49 C ATOM 175 NH1 ARG 21 -8.501 5.885 -0.648 1.00 1.26 N ATOM 176 NH2 ARG 21 -7.911 4.338 0.897 1.00 2.35 N ATOM 177 C ARG 21 -5.613 -1.741 -1.580 1.00 0.61 C ATOM 178 O ARG 21 -5.084 -1.624 -2.687 1.00 0.63 O ATOM 179 N CYS 22 -5.988 -2.910 -0.978 1.00 0.61 N ATOM 180 CA CYS 22 -5.526 -4.181 -1.554 1.00 0.63 C ATOM 181 CB CYS 22 -4.609 -4.952 -0.623 1.00 0.72 C ATOM 182 SG CYS 22 -3.153 -4.004 0.060 1.00 1.18 S ATOM 183 C CYS 22 -6.738 -4.955 -1.873 1.00 0.73 C ATOM 184 O CYS 22 -7.626 -5.170 -1.013 1.00 0.90 O ATOM 185 N ASP 23 -6.900 -5.359 -3.157 1.00 0.76 N ATOM 186 CA ASP 23 -8.143 -5.988 -3.577 1.00 0.90 C ATOM 187 CB ASP 23 -8.849 -5.230 -4.798 1.00 1.07 C ATOM 188 CG ASP 23 -10.211 -5.800 -5.319 1.00 1.45 C ATOM 189 OD1 ASP 23 -10.398 -7.060 -5.100 1.00 2.05 O ATOM 190 OD2 ASP 23 -11.112 -5.160 -5.863 1.00 1.88 O ATOM 191 C ASP 23 -7.811 -7.419 -3.969 1.00 1.03 C ATOM 192 O ASP 23 -7.176 -7.711 -4.961 1.00 1.61 O ATOM 193 N GLU 24 -8.226 -8.423 -3.190 1.00 1.05 N ATOM 194 CA GLU 24 -7.889 -9.822 -3.436 1.00 1.28 C ATOM 195 CB GLU 24 -7.442 -10.556 -2.126 1.00 1.34 C ATOM 196 CG GLU 24 -6.414 -9.757 -1.372 1.00 1.49 C ATOM 197 CD GLU 24 -6.191 -10.402 0.021 1.00 1.63 C ATOM 198 OE1 GLU 24 -7.134 -10.353 0.811 1.00 1.81 O ATOM 199 OE2 GLU 24 -5.059 -10.790 0.395 1.00 2.14 O ATOM 200 C GLU 24 -8.963 -10.632 -4.135 1.00 1.44 C ATOM 201 O GLU 24 -8.866 -11.841 -4.268 1.00 1.50 O ATOM 202 N SER 25 -9.959 -9.898 -4.690 1.00 1.83 N ATOM 203 CA SER 25 -10.859 -10.411 -5.737 1.00 2.25 C ATOM 204 CB SER 25 -12.305 -9.846 -5.512 1.00 2.31 C ATOM 205 OG SER 25 -12.394 -8.478 -6.003 1.00 2.64 O ATOM 206 C SER 25 -10.392 -10.050 -7.116 1.00 2.49 C ATOM 207 O SER 25 -10.756 -10.785 -8.036 1.00 2.91 O ATOM 208 N ASN 26 -9.671 -8.956 -7.259 1.00 2.52 N ATOM 209 CA ASN 26 -9.090 -8.514 -8.554 1.00 2.69 C ATOM 210 CB ASN 26 -9.232 -6.947 -8.681 1.00 2.65 C ATOM 211 CG ASN 26 -9.370 -6.461 -10.106 1.00 2.89 C ATOM 212 OD1 ASN 26 -8.757 -5.514 -10.546 1.00 3.08 O ATOM 213 ND2 ASN 26 -10.225 -7.125 -10.916 1.00 3.38 N ATOM 214 C ASN 26 -7.655 -8.923 -8.622 1.00 2.51 C ATOM 215 O ASN 26 -7.199 -8.972 -9.749 1.00 2.57 O ATOM 216 N HIS 27 -6.943 -9.037 -7.495 1.00 2.38 N ATOM 217 CA HIS 27 -5.552 -9.287 -7.487 1.00 2.36 C ATOM 218 CB HIS 27 -5.071 -10.502 -8.277 1.00 2.70 C ATOM 219 ND1 HIS 27 -6.195 -12.233 -6.898 1.00 3.31 N ATOM 220 CG HIS 27 -5.931 -11.650 -8.123 1.00 3.12 C ATOM 221 CE1 HIS 27 -7.044 -13.187 -7.117 1.00 3.72 C ATOM 222 NE2 HIS 27 -7.324 -13.246 -8.452 1.00 3.98 N ATOM 223 CD2 HIS 27 -6.646 -12.248 -9.091 1.00 3.76 C ATOM 224 C HIS 27 -4.705 -8.048 -7.624 1.00 2.02 C ATOM 225 O HIS 27 -3.570 -8.133 -8.103 1.00 2.24 O ATOM 226 N CYS 28 -5.159 -6.868 -7.085 1.00 1.57 N ATOM 227 CA CYS 28 -4.616 -5.524 -7.313 1.00 1.28 C ATOM 228 CB CYS 28 -5.697 -4.772 -8.105 1.00 1.28 C ATOM 229 SG CYS 28 -5.657 -5.490 -9.744 1.00 1.72 S ATOM 230 C CYS 28 -4.262 -4.789 -6.016 1.00 1.05 C ATOM 231 O CYS 28 -4.999 -4.827 -5.032 1.00 1.02 O ATOM 232 N VAL 29 -3.107 -4.138 -5.911 1.00 0.95 N ATOM 233 CA VAL 29 -2.766 -3.199 -4.823 1.00 0.82 C ATOM 234 CB VAL 29 -1.389 -3.556 -4.185 1.00 0.99 C ATOM 235 CG1 VAL 29 -1.244 -2.581 -3.010 1.00 0.99 C ATOM 236 CG2 VAL 29 -1.497 -4.992 -3.659 1.00 1.14 C ATOM 237 C VAL 29 -2.731 -1.878 -5.483 1.00 0.80 C ATOM 238 O VAL 29 -1.962 -1.646 -6.462 1.00 0.92 O ATOM 239 N GLU 30 -3.471 -0.919 -4.894 1.00 0.75 N ATOM 240 CA GLU 30 -3.471 0.476 -5.294 1.00 0.72 C ATOM 241 CB GLU 30 -4.882 0.949 -5.787 1.00 0.76 C ATOM 242 CG GLU 30 -5.530 0.302 -7.048 1.00 1.28 C ATOM 243 CD GLU 30 -6.829 1.063 -7.373 1.00 1.19 C ATOM 244 OE1 GLU 30 -6.748 2.237 -7.839 1.00 1.71 O ATOM 245 OE2 GLU 30 -7.884 0.413 -7.416 1.00 1.52 O ATOM 246 C GLU 30 -3.039 1.365 -4.084 1.00 0.68 C ATOM 247 O GLU 30 -3.464 1.306 -2.930 1.00 0.67 O ATOM 248 N VAL 31 -2.038 2.258 -4.397 1.00 0.71 N ATOM 249 CA VAL 31 -1.226 2.940 -3.332 1.00 0.68 C ATOM 250 CB VAL 31 0.328 2.704 -3.527 1.00 0.83 C ATOM 251 CG1 VAL 31 1.106 3.423 -2.416 1.00 0.90 C ATOM 252 CG2 VAL 31 0.629 1.215 -3.470 1.00 1.00 C ATOM 253 C VAL 31 -1.447 4.377 -3.297 1.00 0.57 C ATOM 254 O VAL 31 -0.947 5.099 -4.170 1.00 0.61 O ATOM 255 N ARG 32 -2.282 4.907 -2.355 1.00 0.57 N ATOM 256 CA ARG 32 -2.715 6.295 -2.450 1.00 0.55 C ATOM 257 CB ARG 32 -4.211 6.406 -2.299 1.00 0.66 C ATOM 258 CG ARG 32 -4.858 5.856 -3.558 1.00 0.73 C ATOM 259 CD ARG 32 -4.737 6.740 -4.804 1.00 0.68 C ATOM 260 NE ARG 32 -5.706 6.212 -5.855 1.00 0.99 N ATOM 261 CZ ARG 32 -5.968 6.699 -7.073 1.00 1.26 C ATOM 262 NH1 ARG 32 -6.949 6.071 -7.722 1.00 1.86 N ATOM 263 NH2 ARG 32 -5.425 7.742 -7.572 1.00 1.63 N ATOM 264 C ARG 32 -1.950 7.059 -1.300 1.00 0.60 C ATOM 265 O ARG 32 -2.073 6.738 -0.121 1.00 0.71 O ATOM 266 N CYS 33 -1.254 8.150 -1.659 1.00 0.66 N ATOM 267 CA CYS 33 -0.391 8.837 -0.690 1.00 0.79 C ATOM 268 CB CYS 33 1.155 8.573 -0.845 1.00 0.94 C ATOM 269 SG CYS 33 1.705 8.437 -2.595 1.00 1.65 S ATOM 270 C CYS 33 -0.627 10.350 -0.727 1.00 0.72 C ATOM 271 O CYS 33 -1.080 10.898 -1.749 1.00 0.68 O ATOM 272 N SER 34 -0.396 11.094 0.380 1.00 0.89 N ATOM 273 CA SER 34 -0.876 12.475 0.418 1.00 1.00 C ATOM 274 CB SER 34 -1.022 12.989 1.798 1.00 1.35 C ATOM 275 OG SER 34 -2.001 12.222 2.536 1.00 2.03 O ATOM 276 C SER 34 -0.038 13.434 -0.316 1.00 0.96 C ATOM 277 O SER 34 -0.452 14.583 -0.567 1.00 1.32 O ATOM 278 N ASP 35 1.167 13.021 -0.787 1.00 1.32 N ATOM 279 CA ASP 35 2.033 13.704 -1.703 1.00 1.42 C ATOM 280 CB ASP 35 2.949 14.660 -1.025 1.00 1.69 C ATOM 281 CG ASP 35 4.316 14.320 -0.528 1.00 2.36 C ATOM 282 OD1 ASP 35 5.098 15.257 -0.421 1.00 2.50 O ATOM 283 OD2 ASP 35 4.548 13.160 -0.059 1.00 3.06 O ATOM 284 C ASP 35 2.746 12.550 -2.540 1.00 1.41 C ATOM 285 O ASP 35 2.781 11.433 -2.090 1.00 2.05 O ATOM 286 N THR 36 3.166 12.809 -3.803 1.00 1.12 N ATOM 287 CA THR 36 3.719 11.841 -4.658 1.00 1.13 C ATOM 288 CB THR 36 5.233 11.521 -4.365 1.00 1.51 C ATOM 289 OG1 THR 36 5.890 11.083 -5.577 1.00 1.83 O ATOM 290 CG2 THR 36 5.451 10.401 -3.381 1.00 2.00 C ATOM 291 C THR 36 2.804 10.721 -5.138 1.00 0.99 C ATOM 292 O THR 36 1.628 10.587 -4.810 1.00 1.30 O ATOM 293 N LYS 37 3.376 9.811 -5.944 1.00 1.06 N ATOM 294 CA LYS 37 2.552 8.687 -6.498 1.00 1.10 C ATOM 295 CB LYS 37 1.909 9.005 -7.836 1.00 1.51 C ATOM 296 CG LYS 37 2.954 9.562 -8.869 1.00 2.07 C ATOM 297 CD LYS 37 2.130 10.207 -10.057 1.00 2.44 C ATOM 298 CE LYS 37 1.057 9.338 -10.691 1.00 2.90 C ATOM 299 NZ LYS 37 0.492 9.945 -11.912 1.00 2.93 N ATOM 300 C LYS 37 3.441 7.434 -6.560 1.00 1.03 C ATOM 301 O LYS 37 4.586 7.622 -6.770 1.00 1.45 O ATOM 302 N TYR 38 2.833 6.245 -6.434 1.00 0.96 N ATOM 303 CA TYR 38 3.669 5.104 -6.559 1.00 0.91 C ATOM 304 CB TYR 38 4.290 4.892 -5.162 1.00 0.97 C ATOM 305 CG TYR 38 5.255 3.784 -5.072 1.00 0.92 C ATOM 306 CD1 TYR 38 6.517 4.186 -5.377 1.00 1.14 C ATOM 307 CE1 TYR 38 7.554 3.211 -5.391 1.00 1.21 C ATOM 308 CZ TYR 38 7.273 1.925 -5.023 1.00 1.06 C ATOM 309 OH TYR 38 8.384 1.116 -4.861 1.00 1.26 O ATOM 310 CD2 TYR 38 4.961 2.488 -4.770 1.00 0.88 C ATOM 311 CE2 TYR 38 5.975 1.595 -4.706 1.00 0.92 C ATOM 312 C TYR 38 2.843 3.861 -7.097 1.00 0.95 C ATOM 313 O TYR 38 1.680 3.597 -6.696 1.00 1.03 O ATOM 314 N THR 39 3.437 3.051 -7.970 1.00 1.04 N ATOM 315 CA THR 39 2.742 1.956 -8.664 1.00 1.22 C ATOM 316 CB THR 39 3.012 1.981 -10.156 1.00 1.75 C ATOM 317 OG1 THR 39 2.714 3.251 -10.689 1.00 2.53 O ATOM 318 CG2 THR 39 2.123 1.059 -10.851 1.00 1.30 C ATOM 319 C THR 39 3.181 0.617 -8.060 1.00 1.06 C ATOM 320 O THR 39 4.367 0.239 -8.102 1.00 1.11 O ATOM 321 N LEU 40 2.273 -0.142 -7.474 1.00 1.01 N ATOM 322 CA LEU 40 2.710 -1.460 -7.017 1.00 1.04 C ATOM 323 CB LEU 40 2.586 -1.657 -5.499 1.00 1.03 C ATOM 324 CG LEU 40 3.038 -2.964 -4.820 1.00 0.83 C ATOM 325 CD1 LEU 40 4.585 -3.051 -4.887 1.00 1.15 C ATOM 326 CD2 LEU 40 2.737 -2.764 -3.343 1.00 1.57 C ATOM 327 C LEU 40 1.986 -2.637 -7.628 1.00 1.11 C ATOM 328 O LEU 40 0.794 -2.805 -7.490 1.00 1.02 O ATOM 329 N CYS 41 2.644 -3.344 -8.553 1.00 1.82 N ATOM 330 CA CYS 41 1.985 -4.443 -9.288 1.00 2.12 C ATOM 331 CB CYS 41 2.451 -4.602 -10.753 1.00 3.05 C ATOM 332 SG CYS 41 2.001 -3.165 -11.846 1.00 3.51 S ATOM 333 C CYS 41 2.097 -5.749 -8.370 1.00 2.48 C ATOM 334 OXT CYS 41 0.986 -6.058 -7.672 1.00 2.39 ATOM 335 O CYS 41 3.118 -6.433 -8.335 1.00 3.30 O TER 335 O CYS 41 END