####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS110_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 1 - 27 4.92 10.48 LONGEST_CONTINUOUS_SEGMENT: 27 2 - 28 5.00 10.28 LCS_AVERAGE: 57.76 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 7 - 20 1.95 12.88 LONGEST_CONTINUOUS_SEGMENT: 14 8 - 21 1.98 12.87 LCS_AVERAGE: 24.21 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 10 - 17 0.87 14.16 LCS_AVERAGE: 12.55 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 27 3 3 3 4 5 6 14 14 16 18 21 23 25 27 28 30 30 30 32 35 LCS_GDT Q 2 Q 2 4 5 27 3 4 4 5 5 8 14 14 16 18 21 23 25 27 28 30 30 30 32 35 LCS_GDT E 3 E 3 4 5 27 3 4 4 5 6 8 10 12 13 15 19 23 25 27 28 30 30 30 31 35 LCS_GDT T 4 T 4 4 5 27 3 4 4 5 6 8 10 14 16 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT R 5 R 5 4 8 27 4 5 6 10 10 13 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT K 6 K 6 5 13 27 4 5 7 10 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT K 7 K 7 5 14 27 4 4 7 10 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT C 8 C 8 5 14 27 4 4 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT T 9 T 9 5 14 27 4 4 7 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT E 10 E 10 8 14 27 4 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT M 11 M 11 8 14 27 4 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT K 12 K 12 8 14 27 4 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT K 13 K 13 8 14 27 4 7 8 11 13 15 16 17 17 18 19 23 25 27 28 30 30 32 32 35 LCS_GDT K 14 K 14 8 14 27 3 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT F 15 F 15 8 14 27 3 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT K 16 K 16 8 14 27 3 4 8 10 11 13 16 17 17 18 19 21 25 27 28 30 30 32 32 35 LCS_GDT N 17 N 17 8 14 27 3 7 8 11 12 15 16 17 17 18 20 23 25 27 28 30 30 32 32 35 LCS_GDT C 18 C 18 5 14 27 3 4 7 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT E 19 E 19 4 14 27 3 4 7 10 12 15 16 17 17 18 21 23 25 27 28 30 30 30 32 35 LCS_GDT V 20 V 20 4 14 27 3 4 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT R 21 R 21 3 14 27 3 3 4 10 13 15 16 17 17 18 21 23 25 27 28 30 30 30 32 35 LCS_GDT C 22 C 22 4 8 27 3 3 5 6 8 12 14 15 17 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT D 23 D 23 5 8 27 3 5 5 6 7 9 10 14 16 17 21 23 25 27 28 30 30 32 32 35 LCS_GDT E 24 E 24 5 8 27 3 5 5 6 7 9 10 13 15 16 17 21 25 26 28 30 30 32 32 35 LCS_GDT S 25 S 25 5 8 27 3 5 5 6 7 9 10 13 15 16 17 21 25 26 28 30 30 32 32 35 LCS_GDT N 26 N 26 5 8 27 3 5 5 6 7 9 10 13 15 16 18 18 25 27 28 30 30 32 32 35 LCS_GDT H 27 H 27 5 8 27 3 5 5 6 9 10 14 14 16 18 21 23 25 27 28 30 30 32 32 35 LCS_GDT C 28 C 28 4 8 27 3 5 5 7 9 10 14 14 16 18 21 22 25 27 28 30 30 32 32 35 LCS_GDT V 29 V 29 4 8 26 3 4 4 7 8 10 12 13 15 17 19 21 24 27 28 30 30 32 32 35 LCS_GDT E 30 E 30 4 5 18 3 4 4 7 8 10 11 13 15 16 18 21 23 27 28 30 30 32 32 35 LCS_GDT V 31 V 31 5 9 18 3 4 6 7 8 8 10 11 13 16 17 20 23 24 25 28 30 32 32 35 LCS_GDT R 32 R 32 5 9 18 3 4 6 7 8 10 10 11 12 14 16 20 23 24 25 28 30 32 32 35 LCS_GDT C 33 C 33 5 9 15 3 4 6 7 8 10 10 11 12 14 15 18 18 22 25 27 28 30 32 34 LCS_GDT S 34 S 34 5 9 15 3 4 6 7 8 10 10 11 12 14 15 18 18 21 25 27 28 29 30 33 LCS_GDT D 35 D 35 5 9 15 3 5 6 7 8 10 10 11 12 14 15 18 21 23 25 27 28 29 30 33 LCS_GDT T 36 T 36 5 9 15 3 5 6 7 8 10 10 11 12 14 15 18 21 23 25 27 28 30 32 34 LCS_GDT K 37 K 37 5 9 15 3 5 6 7 8 10 10 11 15 16 17 20 23 24 25 28 30 32 32 35 LCS_GDT Y 38 Y 38 5 9 15 3 5 6 7 8 10 10 11 14 16 17 20 23 24 25 28 30 32 32 35 LCS_GDT T 39 T 39 5 9 15 3 5 6 7 8 10 10 13 14 16 17 20 23 24 25 28 30 32 32 35 LCS_GDT L 40 L 40 3 3 15 3 3 4 4 6 7 9 13 15 16 17 20 23 24 25 28 30 32 32 35 LCS_GDT C 41 C 41 3 3 15 3 3 4 4 5 6 7 7 9 13 15 16 23 23 24 27 28 32 32 35 LCS_AVERAGE LCS_A: 31.51 ( 12.55 24.21 57.76 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 11 13 15 16 17 17 18 21 23 25 27 28 30 30 32 32 35 GDT PERCENT_AT 9.76 17.07 19.51 26.83 31.71 36.59 39.02 41.46 41.46 43.90 51.22 56.10 60.98 65.85 68.29 73.17 73.17 78.05 78.05 85.37 GDT RMS_LOCAL 0.05 0.60 0.87 1.51 1.83 1.98 2.14 2.48 2.48 2.80 3.90 4.39 4.62 4.80 4.93 5.29 5.29 6.15 6.15 6.50 GDT RMS_ALL_AT 11.49 13.71 14.16 12.92 11.97 12.21 12.40 11.93 11.93 11.53 10.33 10.36 10.73 10.07 9.90 10.02 10.02 8.40 8.40 9.12 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 13.742 0 0.666 0.624 15.557 0.000 0.000 14.470 LGA Q 2 Q 2 12.400 0 0.228 1.345 13.352 0.000 0.000 10.703 LGA E 3 E 3 12.804 0 0.099 1.393 19.955 0.000 0.000 19.186 LGA T 4 T 4 9.730 0 0.552 0.965 12.872 0.000 0.000 12.081 LGA R 5 R 5 4.938 0 0.333 1.356 10.301 30.455 11.074 10.301 LGA K 6 K 6 1.982 0 0.212 0.973 3.271 52.727 45.657 2.326 LGA K 7 K 7 2.430 0 0.224 0.947 7.033 55.000 25.051 6.992 LGA C 8 C 8 0.765 0 0.328 0.849 1.934 77.727 68.788 1.934 LGA T 9 T 9 1.525 0 0.073 1.072 3.883 54.545 45.455 3.883 LGA E 10 E 10 2.105 0 0.158 0.868 2.950 51.364 45.657 2.107 LGA M 11 M 11 1.295 0 0.155 1.016 5.083 65.455 50.227 5.083 LGA K 12 K 12 1.950 0 0.197 1.395 9.544 51.364 29.091 9.544 LGA K 13 K 13 2.203 0 0.198 0.986 5.468 41.364 31.111 5.468 LGA K 14 K 14 1.545 0 0.055 1.001 5.839 54.545 40.606 5.839 LGA F 15 F 15 1.820 0 0.334 0.940 4.909 62.273 39.504 4.209 LGA K 16 K 16 3.990 0 0.270 0.699 11.795 14.545 6.465 11.795 LGA N 17 N 17 2.858 0 0.126 1.016 5.207 36.818 19.545 5.207 LGA C 18 C 18 2.284 0 0.490 1.046 3.912 35.455 31.212 2.906 LGA E 19 E 19 2.810 0 0.410 0.722 8.394 35.455 16.364 7.572 LGA V 20 V 20 1.915 0 0.319 1.175 3.836 38.636 38.442 3.836 LGA R 21 R 21 2.420 0 0.476 1.320 6.137 20.455 10.744 6.137 LGA C 22 C 22 6.620 0 0.492 0.610 8.697 0.455 0.303 5.217 LGA D 23 D 23 9.397 0 0.636 1.585 13.168 0.000 0.000 13.168 LGA E 24 E 24 8.196 0 0.605 0.923 10.824 0.000 0.000 8.977 LGA S 25 S 25 11.355 0 0.067 0.650 14.267 0.000 0.000 13.836 LGA N 26 N 26 15.799 0 0.146 0.965 18.542 0.000 0.000 14.638 LGA H 27 H 27 13.656 0 0.377 1.143 17.954 0.000 0.000 17.387 LGA C 28 C 28 12.917 0 0.180 0.207 13.565 0.000 0.000 13.565 LGA V 29 V 29 12.668 0 0.333 0.270 15.770 0.000 0.000 13.111 LGA E 30 E 30 14.186 0 0.137 1.242 20.378 0.000 0.000 17.513 LGA V 31 V 31 15.689 0 0.228 1.053 18.976 0.000 0.000 16.782 LGA R 32 R 32 17.922 0 0.188 1.308 26.505 0.000 0.000 25.105 LGA C 33 C 33 16.139 0 0.510 0.583 17.386 0.000 0.000 14.542 LGA S 34 S 34 20.863 0 0.516 0.797 22.262 0.000 0.000 20.476 LGA D 35 D 35 25.112 0 0.381 1.066 27.195 0.000 0.000 27.024 LGA T 36 T 36 19.722 0 0.087 0.138 21.401 0.000 0.000 18.619 LGA K 37 K 37 18.724 0 0.696 1.278 24.399 0.000 0.000 24.399 LGA Y 38 Y 38 15.868 0 0.388 1.416 16.065 0.000 0.000 10.184 LGA T 39 T 39 17.576 0 0.658 0.667 20.707 0.000 0.000 16.372 LGA L 40 L 40 18.363 0 0.371 0.519 20.891 0.000 0.000 20.195 LGA C 41 C 41 17.449 0 1.712 2.074 24.549 0.000 0.000 16.626 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 8.211 8.043 9.396 18.991 13.544 4.435 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 2.48 39.634 35.771 0.660 LGA_LOCAL RMSD: 2.477 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.929 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 8.211 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.791394 * X + 0.598600 * Y + -0.123994 * Z + 0.561795 Y_new = -0.052527 * X + 0.135497 * Y + 0.989384 * Z + 0.173889 Z_new = 0.609046 * X + 0.789506 * Y + -0.075789 * Z + 6.420304 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.075317 -0.654857 1.666498 [DEG: -176.2027 -37.5206 95.4833 ] ZXZ: -3.016918 1.646658 0.657074 [DEG: -172.8567 94.3465 37.6476 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS110_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 2.48 35.771 8.21 REMARK ---------------------------------------------------------- MOLECULE T0955TS110_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 0.180 -7.585 12.066 1.00 0.00 N ATOM 2 CA SER 1 -0.229 -7.347 10.706 1.00 0.00 C ATOM 3 C SER 1 0.009 -5.952 10.205 1.00 0.00 C ATOM 4 O SER 1 0.164 -5.791 9.014 1.00 0.00 O ATOM 8 CB SER 1 -1.716 -7.663 10.531 1.00 0.00 C ATOM 10 OG SER 1 -1.970 -9.044 10.716 1.00 0.00 O ATOM 11 N GLN 2 -0.039 -4.959 11.088 1.00 0.00 N ATOM 12 CA GLN 2 0.141 -3.607 10.661 1.00 0.00 C ATOM 13 C GLN 2 1.610 -3.430 10.290 1.00 0.00 C ATOM 14 O GLN 2 1.968 -2.736 9.348 1.00 0.00 O ATOM 16 CB GLN 2 -0.290 -2.636 11.761 1.00 0.00 C ATOM 17 CD GLN 2 -2.190 -3.760 12.989 1.00 0.00 C ATOM 18 CG GLN 2 -1.783 -2.644 12.046 1.00 0.00 C ATOM 19 OE1 GLN 2 -1.562 -4.818 13.020 1.00 0.00 O ATOM 22 NE2 GLN 2 -3.244 -3.525 13.762 1.00 0.00 N ATOM 23 N GLU 3 2.495 -4.060 11.053 1.00 0.00 N ATOM 24 CA GLU 3 3.979 -3.847 10.884 1.00 0.00 C ATOM 25 C GLU 3 4.131 -4.409 9.467 1.00 0.00 C ATOM 26 O GLU 3 4.916 -3.884 8.676 1.00 0.00 O ATOM 28 CB GLU 3 4.753 -4.567 11.991 1.00 0.00 C ATOM 29 CD GLU 3 5.310 -4.727 14.449 1.00 0.00 C ATOM 30 CG GLU 3 4.593 -3.943 13.367 1.00 0.00 C ATOM 31 OE1 GLU 3 5.769 -5.853 14.161 1.00 0.00 O ATOM 32 OE2 GLU 3 5.411 -4.217 15.584 1.00 0.00 O ATOM 33 N THR 4 3.366 -5.453 9.145 1.00 0.00 N ATOM 34 CA THR 4 3.738 -6.208 7.995 1.00 0.00 C ATOM 35 C THR 4 2.546 -6.046 7.057 1.00 0.00 C ATOM 36 O THR 4 1.747 -6.974 6.913 1.00 0.00 O ATOM 38 CB THR 4 4.037 -7.675 8.356 1.00 0.00 C ATOM 40 OG1 THR 4 2.902 -8.247 9.019 1.00 0.00 O ATOM 41 CG2 THR 4 5.238 -7.761 9.285 1.00 0.00 C ATOM 42 N ARG 5 2.424 -4.903 6.392 1.00 0.00 N ATOM 43 CA ARG 5 0.668 -4.604 6.631 1.00 0.00 C ATOM 44 C ARG 5 0.831 -4.926 5.148 1.00 0.00 C ATOM 45 O ARG 5 -0.157 -4.937 4.401 1.00 0.00 O ATOM 47 CB ARG 5 0.438 -3.208 7.214 1.00 0.00 C ATOM 48 CD ARG 5 -1.589 -3.795 8.573 1.00 0.00 C ATOM 50 NE ARG 5 -2.967 -3.446 8.911 1.00 0.00 N ATOM 51 CG ARG 5 -1.021 -2.885 7.495 1.00 0.00 C ATOM 52 CZ ARG 5 -3.775 -4.214 9.636 1.00 0.00 C ATOM 55 NH1 ARG 5 -5.013 -3.816 9.893 1.00 0.00 N ATOM 58 NH2 ARG 5 -3.343 -5.378 10.100 1.00 0.00 N ATOM 59 N LYS 6 2.070 -5.133 4.709 1.00 0.00 N ATOM 60 CA LYS 6 3.520 -5.582 4.222 1.00 0.00 C ATOM 61 C LYS 6 2.966 -5.224 2.845 1.00 0.00 C ATOM 62 O LYS 6 3.649 -4.596 2.036 1.00 0.00 O ATOM 64 CB LYS 6 3.808 -7.022 4.651 1.00 0.00 C ATOM 65 CD LYS 6 6.272 -6.763 5.055 1.00 0.00 C ATOM 66 CE LYS 6 7.660 -7.094 4.533 1.00 0.00 C ATOM 67 CG LYS 6 5.198 -7.514 4.283 1.00 0.00 C ATOM 71 NZ LYS 6 8.013 -8.522 4.761 1.00 0.00 N ATOM 72 N LYS 7 1.728 -5.629 2.588 1.00 0.00 N ATOM 73 CA LYS 7 1.123 -5.412 1.348 1.00 0.00 C ATOM 74 C LYS 7 1.271 -3.895 1.342 1.00 0.00 C ATOM 75 O LYS 7 1.960 -3.347 0.479 1.00 0.00 O ATOM 77 CB LYS 7 -0.298 -5.980 1.338 1.00 0.00 C ATOM 78 CD LYS 7 0.219 -8.133 0.158 1.00 0.00 C ATOM 79 CE LYS 7 0.062 -9.645 0.182 1.00 0.00 C ATOM 80 CG LYS 7 -0.360 -7.498 1.410 1.00 0.00 C ATOM 84 NZ LYS 7 0.665 -10.286 -1.018 1.00 0.00 N ATOM 85 N CYS 8 0.669 -3.203 2.302 1.00 0.00 N ATOM 86 CA CYS 8 0.626 -1.766 2.110 1.00 0.00 C ATOM 87 C CYS 8 1.584 -1.410 3.247 1.00 0.00 C ATOM 88 O CYS 8 1.616 -0.246 3.658 1.00 0.00 O ATOM 90 CB CYS 8 -0.812 -1.254 2.215 1.00 0.00 C ATOM 91 SG CYS 8 -1.916 -1.859 0.917 1.00 0.00 S ATOM 92 N THR 9 2.350 -2.371 3.785 1.00 0.00 N ATOM 93 CA THR 9 3.161 -2.058 4.878 1.00 0.00 C ATOM 94 C THR 9 4.379 -1.337 4.280 1.00 0.00 C ATOM 95 O THR 9 4.940 -0.426 4.889 1.00 0.00 O ATOM 97 CB THR 9 3.550 -3.319 5.671 1.00 0.00 C ATOM 99 OG1 THR 9 4.273 -4.219 4.820 1.00 0.00 O ATOM 100 CG2 THR 9 2.308 -4.030 6.185 1.00 0.00 C ATOM 101 N GLU 10 4.745 -1.730 3.061 1.00 0.00 N ATOM 102 CA GLU 10 5.878 -1.145 2.348 1.00 0.00 C ATOM 103 C GLU 10 5.398 0.297 2.270 1.00 0.00 C ATOM 104 O GLU 10 6.049 1.198 2.806 1.00 0.00 O ATOM 106 CB GLU 10 6.096 -1.856 1.012 1.00 0.00 C ATOM 107 CD GLU 10 8.606 -1.601 0.890 1.00 0.00 C ATOM 108 CG GLU 10 7.277 -1.329 0.213 1.00 0.00 C ATOM 109 OE1 GLU 10 8.657 -2.493 1.763 1.00 0.00 O ATOM 110 OE2 GLU 10 9.597 -0.920 0.548 1.00 0.00 O ATOM 111 N MET 11 4.271 0.520 1.606 1.00 0.00 N ATOM 112 CA MET 11 3.989 1.943 1.184 1.00 0.00 C ATOM 113 C MET 11 2.930 2.222 2.245 1.00 0.00 C ATOM 114 O MET 11 2.438 3.343 2.365 1.00 0.00 O ATOM 116 CB MET 11 3.552 1.990 -0.282 1.00 0.00 C ATOM 117 SD MET 11 4.069 1.612 -2.978 1.00 0.00 S ATOM 118 CE MET 11 3.976 3.378 -3.259 1.00 0.00 C ATOM 119 CG MET 11 4.633 1.569 -1.265 1.00 0.00 C ATOM 120 N LYS 12 2.592 1.199 3.024 1.00 0.00 N ATOM 121 CA LYS 12 1.443 1.367 3.963 1.00 0.00 C ATOM 122 C LYS 12 2.443 1.794 5.043 1.00 0.00 C ATOM 123 O LYS 12 2.179 2.688 5.836 1.00 0.00 O ATOM 125 CB LYS 12 0.661 0.057 4.091 1.00 0.00 C ATOM 126 CD LYS 12 0.458 -0.462 1.644 1.00 0.00 C ATOM 127 CE LYS 12 -0.500 -0.712 0.490 1.00 0.00 C ATOM 128 CG LYS 12 -0.295 -0.209 2.941 1.00 0.00 C ATOM 132 NZ LYS 12 0.224 -1.017 -0.775 1.00 0.00 N ATOM 133 N LYS 13 3.599 1.153 5.077 1.00 0.00 N ATOM 134 CA LYS 13 4.288 1.073 6.452 1.00 0.00 C ATOM 135 C LYS 13 5.117 2.256 5.971 1.00 0.00 C ATOM 136 O LYS 13 5.595 3.037 6.803 1.00 0.00 O ATOM 138 CB LYS 13 4.901 -0.313 6.664 1.00 0.00 C ATOM 139 CD LYS 13 6.631 -2.009 6.008 1.00 0.00 C ATOM 140 CE LYS 13 7.836 -2.296 5.126 1.00 0.00 C ATOM 141 CG LYS 13 6.097 -0.605 5.773 1.00 0.00 C ATOM 145 NZ LYS 13 8.334 -3.688 5.304 1.00 0.00 N ATOM 146 N LYS 14 5.266 2.488 4.683 1.00 0.00 N ATOM 147 CA LYS 14 6.143 3.568 4.110 1.00 0.00 C ATOM 148 C LYS 14 5.398 4.884 3.983 1.00 0.00 C ATOM 149 O LYS 14 5.932 5.924 4.329 1.00 0.00 O ATOM 151 CB LYS 14 6.688 3.146 2.745 1.00 0.00 C ATOM 152 CD LYS 14 8.224 3.627 0.819 1.00 0.00 C ATOM 153 CE LYS 14 9.171 4.637 0.191 1.00 0.00 C ATOM 154 CG LYS 14 7.634 4.157 2.115 1.00 0.00 C ATOM 158 NZ LYS 14 9.756 4.132 -1.083 1.00 0.00 N ATOM 159 N PHE 15 4.168 4.846 3.493 1.00 0.00 N ATOM 160 CA PHE 15 2.998 5.520 3.717 1.00 0.00 C ATOM 161 C PHE 15 1.552 6.015 3.799 1.00 0.00 C ATOM 162 O PHE 15 1.200 7.073 3.259 1.00 0.00 O ATOM 164 CB PHE 15 3.073 6.933 3.134 1.00 0.00 C ATOM 165 CG PHE 15 3.259 6.965 1.644 1.00 0.00 C ATOM 166 CZ PHE 15 3.610 7.025 -1.112 1.00 0.00 C ATOM 167 CD1 PHE 15 2.166 7.024 0.797 1.00 0.00 C ATOM 168 CE1 PHE 15 2.337 7.054 -0.574 1.00 0.00 C ATOM 169 CD2 PHE 15 4.526 6.936 1.090 1.00 0.00 C ATOM 170 CE2 PHE 15 4.697 6.966 -0.281 1.00 0.00 C ATOM 171 N LYS 16 0.738 5.244 4.521 1.00 0.00 N ATOM 172 CA LYS 16 -0.650 5.228 4.571 1.00 0.00 C ATOM 173 C LYS 16 -0.925 6.714 4.771 1.00 0.00 C ATOM 174 O LYS 16 -1.591 7.276 3.918 1.00 0.00 O ATOM 176 CB LYS 16 -1.137 4.305 5.689 1.00 0.00 C ATOM 177 CD LYS 16 -3.424 5.199 6.204 1.00 0.00 C ATOM 178 CE LYS 16 -4.868 4.809 6.476 1.00 0.00 C ATOM 179 CG LYS 16 -2.630 4.023 5.658 1.00 0.00 C ATOM 183 NZ LYS 16 -5.614 4.521 5.220 1.00 0.00 N ATOM 184 N ASN 17 -0.138 7.312 5.652 1.00 0.00 N ATOM 185 CA ASN 17 -0.276 8.777 6.022 1.00 0.00 C ATOM 186 C ASN 17 0.522 9.437 4.903 1.00 0.00 C ATOM 187 O ASN 17 0.555 10.663 4.790 1.00 0.00 O ATOM 189 CB ASN 17 0.238 9.021 7.442 1.00 0.00 C ATOM 190 CG ASN 17 -0.190 10.366 7.994 1.00 0.00 C ATOM 191 OD1 ASN 17 -1.377 10.692 8.012 1.00 0.00 O ATOM 194 ND2 ASN 17 0.778 11.154 8.448 1.00 0.00 N ATOM 195 N CYS 18 1.153 8.620 4.067 1.00 0.00 N ATOM 196 CA CYS 18 1.962 9.159 3.013 1.00 0.00 C ATOM 197 C CYS 18 1.363 8.649 1.711 1.00 0.00 C ATOM 198 O CYS 18 2.104 8.232 0.814 1.00 0.00 O ATOM 200 CB CYS 18 3.422 8.741 3.192 1.00 0.00 C ATOM 201 SG CYS 18 4.582 9.586 2.092 1.00 0.00 S ATOM 202 N GLU 19 0.028 8.675 1.661 1.00 0.00 N ATOM 203 CA GLU 19 -0.644 7.874 0.575 1.00 0.00 C ATOM 204 C GLU 19 -0.545 6.413 0.158 1.00 0.00 C ATOM 205 O GLU 19 -0.927 6.038 -0.962 1.00 0.00 O ATOM 207 CB GLU 19 -0.371 8.496 -0.796 1.00 0.00 C ATOM 208 CD GLU 19 -0.651 10.478 -2.335 1.00 0.00 C ATOM 209 CG GLU 19 -0.885 9.918 -0.946 1.00 0.00 C ATOM 210 OE1 GLU 19 -0.220 9.711 -3.220 1.00 0.00 O ATOM 211 OE2 GLU 19 -0.899 11.686 -2.539 1.00 0.00 O ATOM 212 N VAL 20 -0.044 5.589 1.051 1.00 0.00 N ATOM 213 CA VAL 20 -0.009 4.156 0.761 1.00 0.00 C ATOM 214 C VAL 20 -1.233 3.761 1.577 1.00 0.00 C ATOM 215 O VAL 20 -1.878 4.585 2.227 1.00 0.00 O ATOM 217 CB VAL 20 1.336 3.530 1.174 1.00 0.00 C ATOM 218 CG1 VAL 20 2.480 4.169 0.402 1.00 0.00 C ATOM 219 CG2 VAL 20 1.553 3.674 2.673 1.00 0.00 C ATOM 220 N ARG 21 -1.591 2.481 1.510 1.00 0.00 N ATOM 221 CA ARG 21 -2.859 1.902 1.998 1.00 0.00 C ATOM 222 C ARG 21 -3.148 2.198 3.476 1.00 0.00 C ATOM 223 O ARG 21 -3.838 3.155 3.840 1.00 0.00 O ATOM 225 CB ARG 21 -2.869 0.386 1.793 1.00 0.00 C ATOM 226 CD ARG 21 -5.343 0.176 1.425 1.00 0.00 C ATOM 228 NE ARG 21 -5.218 -0.194 0.017 1.00 0.00 N ATOM 229 CG ARG 21 -4.152 -0.293 2.245 1.00 0.00 C ATOM 230 CZ ARG 21 -5.566 -1.377 -0.477 1.00 0.00 C ATOM 233 NH1 ARG 21 -5.417 -1.624 -1.771 1.00 0.00 N ATOM 236 NH2 ARG 21 -6.064 -2.310 0.322 1.00 0.00 N ATOM 237 N CYS 22 -2.580 1.300 4.287 1.00 0.00 N ATOM 238 CA CYS 22 -2.846 1.622 5.856 1.00 0.00 C ATOM 239 C CYS 22 -1.619 0.738 5.662 1.00 0.00 C ATOM 240 O CYS 22 -0.658 1.154 5.012 1.00 0.00 O ATOM 242 CB CYS 22 -4.246 1.164 6.268 1.00 0.00 C ATOM 243 SG CYS 22 -5.593 2.046 5.446 1.00 0.00 S ATOM 244 N ASP 23 -1.637 -0.484 6.181 1.00 0.00 N ATOM 245 CA ASP 23 -0.866 -1.518 5.570 1.00 0.00 C ATOM 246 C ASP 23 -0.938 -2.848 4.882 1.00 0.00 C ATOM 247 O ASP 23 -0.087 -3.731 5.077 1.00 0.00 O ATOM 249 CB ASP 23 0.167 -2.069 6.555 1.00 0.00 C ATOM 250 CG ASP 23 -0.472 -2.700 7.777 1.00 0.00 C ATOM 251 OD1 ASP 23 -1.708 -2.593 7.923 1.00 0.00 O ATOM 252 OD2 ASP 23 0.263 -3.301 8.588 1.00 0.00 O ATOM 253 N GLU 24 -1.967 -3.064 4.044 1.00 0.00 N ATOM 254 CA GLU 24 -2.079 -4.049 3.000 1.00 0.00 C ATOM 255 C GLU 24 -1.736 -5.411 3.613 1.00 0.00 C ATOM 256 O GLU 24 -0.571 -5.703 3.903 1.00 0.00 O ATOM 258 CB GLU 24 -1.158 -3.697 1.831 1.00 0.00 C ATOM 259 CD GLU 24 -2.602 -4.616 -0.025 1.00 0.00 C ATOM 260 CG GLU 24 -1.250 -4.659 0.658 1.00 0.00 C ATOM 261 OE1 GLU 24 -3.343 -3.632 0.185 1.00 0.00 O ATOM 262 OE2 GLU 24 -2.923 -5.565 -0.771 1.00 0.00 O ATOM 263 N SER 25 -2.767 -6.233 3.803 1.00 0.00 N ATOM 264 CA SER 25 -2.585 -7.593 4.357 1.00 0.00 C ATOM 265 C SER 25 -2.813 -7.481 5.859 1.00 0.00 C ATOM 266 O SER 25 -3.622 -8.241 6.406 1.00 0.00 O ATOM 268 CB SER 25 -1.194 -8.130 4.013 1.00 0.00 C ATOM 270 OG SER 25 -0.184 -7.406 4.694 1.00 0.00 O ATOM 271 N ASN 26 -2.211 -6.541 6.557 1.00 0.00 N ATOM 272 CA ASN 26 -2.407 -6.365 7.845 1.00 0.00 C ATOM 273 C ASN 26 -3.387 -5.232 8.157 1.00 0.00 C ATOM 274 O ASN 26 -3.575 -4.881 9.302 1.00 0.00 O ATOM 276 CB ASN 26 -1.080 -6.100 8.558 1.00 0.00 C ATOM 277 CG ASN 26 -0.174 -7.317 8.574 1.00 0.00 C ATOM 278 OD1 ASN 26 -0.007 -7.990 7.557 1.00 0.00 O ATOM 281 ND2 ASN 26 0.413 -7.601 9.730 1.00 0.00 N ATOM 282 N HIS 27 -3.978 -4.594 7.152 1.00 0.00 N ATOM 283 CA HIS 27 -4.943 -3.589 7.545 1.00 0.00 C ATOM 284 C HIS 27 -5.019 -2.179 6.970 1.00 0.00 C ATOM 285 O HIS 27 -4.080 -1.396 7.106 1.00 0.00 O ATOM 287 CB HIS 27 -4.856 -3.322 9.049 1.00 0.00 C ATOM 288 CG HIS 27 -5.230 -4.500 9.895 1.00 0.00 C ATOM 290 ND1 HIS 27 -4.629 -5.732 9.762 1.00 0.00 N ATOM 291 CE1 HIS 27 -5.171 -6.582 10.652 1.00 0.00 C ATOM 292 CD2 HIS 27 -6.182 -4.747 10.967 1.00 0.00 C ATOM 293 NE2 HIS 27 -6.104 -5.998 11.378 1.00 0.00 N ATOM 294 N CYS 28 -6.133 -1.878 6.305 1.00 0.00 N ATOM 295 CA CYS 28 -6.354 -0.699 5.627 1.00 0.00 C ATOM 296 C CYS 28 -6.491 0.138 6.879 1.00 0.00 C ATOM 297 O CYS 28 -7.107 -0.270 7.858 1.00 0.00 O ATOM 299 CB CYS 28 -7.569 -0.829 4.706 1.00 0.00 C ATOM 300 SG CYS 28 -7.361 -2.018 3.360 1.00 0.00 S ATOM 301 N VAL 29 -5.918 1.336 6.818 1.00 0.00 N ATOM 302 CA VAL 29 -6.209 2.557 7.614 1.00 0.00 C ATOM 303 C VAL 29 -5.760 1.817 8.871 1.00 0.00 C ATOM 304 O VAL 29 -6.333 1.938 9.971 1.00 0.00 O ATOM 306 CB VAL 29 -7.674 3.004 7.447 1.00 0.00 C ATOM 307 CG1 VAL 29 -7.951 4.245 8.281 1.00 0.00 C ATOM 308 CG2 VAL 29 -7.989 3.260 5.981 1.00 0.00 C ATOM 309 N GLU 30 -4.768 0.961 8.641 1.00 0.00 N ATOM 310 CA GLU 30 -4.139 0.120 9.670 1.00 0.00 C ATOM 311 C GLU 30 -2.897 0.585 10.422 1.00 0.00 C ATOM 312 O GLU 30 -1.923 1.022 9.811 1.00 0.00 O ATOM 314 CB GLU 30 -3.743 -1.237 9.084 1.00 0.00 C ATOM 315 CD GLU 30 -4.140 -2.669 11.127 1.00 0.00 C ATOM 316 CG GLU 30 -3.135 -2.196 10.095 1.00 0.00 C ATOM 317 OE1 GLU 30 -5.243 -2.086 11.193 1.00 0.00 O ATOM 318 OE2 GLU 30 -3.825 -3.621 11.870 1.00 0.00 O ATOM 319 N VAL 31 -2.957 0.512 11.751 1.00 0.00 N ATOM 320 CA VAL 31 -2.014 1.010 12.652 1.00 0.00 C ATOM 321 C VAL 31 -0.813 0.109 12.492 1.00 0.00 C ATOM 322 O VAL 31 -0.661 -0.836 13.252 1.00 0.00 O ATOM 324 CB VAL 31 -2.566 1.033 14.089 1.00 0.00 C ATOM 325 CG1 VAL 31 -3.773 1.955 14.182 1.00 0.00 C ATOM 326 CG2 VAL 31 -2.929 -0.372 14.545 1.00 0.00 C ATOM 327 N ARG 32 -0.005 0.360 11.459 1.00 0.00 N ATOM 328 CA ARG 32 1.450 -0.495 12.277 1.00 0.00 C ATOM 329 C ARG 32 1.815 -1.245 11.015 1.00 0.00 C ATOM 330 O ARG 32 1.791 -2.481 11.009 1.00 0.00 O ATOM 332 CB ARG 32 0.986 -1.285 13.503 1.00 0.00 C ATOM 333 CD ARG 32 3.064 -1.014 14.885 1.00 0.00 C ATOM 335 NE ARG 32 4.115 -1.686 15.645 1.00 0.00 N ATOM 336 CG ARG 32 2.107 -2.002 14.239 1.00 0.00 C ATOM 337 CZ ARG 32 5.168 -1.069 16.171 1.00 0.00 C ATOM 340 NH1 ARG 32 6.075 -1.763 16.846 1.00 0.00 N ATOM 343 NH2 ARG 32 5.312 0.240 16.022 1.00 0.00 N ATOM 344 N CYS 33 2.191 -0.524 9.962 1.00 0.00 N ATOM 345 CA CYS 33 2.438 -1.156 8.622 1.00 0.00 C ATOM 346 C CYS 33 3.902 -0.998 8.205 1.00 0.00 C ATOM 347 O CYS 33 4.504 0.065 8.402 1.00 0.00 O ATOM 349 CB CYS 33 1.518 -0.543 7.564 1.00 0.00 C ATOM 350 SG CYS 33 -0.246 -0.765 7.888 1.00 0.00 S ATOM 351 N SER 34 4.482 -2.078 7.673 1.00 0.00 N ATOM 352 CA SER 34 5.867 -2.091 7.260 1.00 0.00 C ATOM 353 C SER 34 6.622 -1.276 8.286 1.00 0.00 C ATOM 354 O SER 34 7.361 -0.354 7.955 1.00 0.00 O ATOM 356 CB SER 34 6.008 -1.532 5.843 1.00 0.00 C ATOM 358 OG SER 34 7.257 -1.887 5.277 1.00 0.00 O ATOM 359 N ASP 35 6.436 -1.651 9.548 1.00 0.00 N ATOM 360 CA ASP 35 7.298 -1.463 10.681 1.00 0.00 C ATOM 361 C ASP 35 6.936 0.014 10.585 1.00 0.00 C ATOM 362 O ASP 35 7.755 0.893 10.838 1.00 0.00 O ATOM 364 CB ASP 35 8.708 -1.967 10.370 1.00 0.00 C ATOM 365 CG ASP 35 9.527 -2.216 11.621 1.00 0.00 C ATOM 366 OD1 ASP 35 8.926 -2.497 12.679 1.00 0.00 O ATOM 367 OD2 ASP 35 10.771 -2.128 11.544 1.00 0.00 O ATOM 368 N THR 36 5.691 0.274 10.219 1.00 0.00 N ATOM 369 CA THR 36 5.351 1.705 9.889 1.00 0.00 C ATOM 370 C THR 36 3.874 1.907 10.050 1.00 0.00 C ATOM 371 O THR 36 3.093 1.079 9.659 1.00 0.00 O ATOM 373 CB THR 36 5.794 2.075 8.462 1.00 0.00 C ATOM 375 OG1 THR 36 7.209 1.882 8.331 1.00 0.00 O ATOM 376 CG2 THR 36 5.474 3.533 8.166 1.00 0.00 C ATOM 377 N LYS 37 3.483 3.022 10.668 1.00 0.00 N ATOM 378 CA LYS 37 2.054 3.206 10.890 1.00 0.00 C ATOM 379 C LYS 37 0.892 3.499 9.946 1.00 0.00 C ATOM 380 O LYS 37 -0.224 3.053 10.220 1.00 0.00 O ATOM 382 CB LYS 37 1.808 4.347 11.879 1.00 0.00 C ATOM 383 CD LYS 37 1.945 6.801 12.389 1.00 0.00 C ATOM 384 CE LYS 37 2.251 8.182 11.832 1.00 0.00 C ATOM 385 CG LYS 37 2.165 5.723 11.340 1.00 0.00 C ATOM 389 NZ LYS 37 2.092 9.243 12.865 1.00 0.00 N ATOM 390 N TYR 38 1.100 4.266 8.871 1.00 0.00 N ATOM 391 CA TYR 38 -0.130 4.748 8.122 1.00 0.00 C ATOM 392 C TYR 38 -1.481 4.353 7.558 1.00 0.00 C ATOM 393 O TYR 38 -1.568 3.675 6.512 1.00 0.00 O ATOM 395 CB TYR 38 0.265 5.328 6.761 1.00 0.00 C ATOM 396 CG TYR 38 1.075 6.601 6.851 1.00 0.00 C ATOM 398 OH TYR 38 3.317 10.095 7.096 1.00 0.00 O ATOM 399 CZ TYR 38 2.574 8.940 7.016 1.00 0.00 C ATOM 400 CD1 TYR 38 2.461 6.558 6.936 1.00 0.00 C ATOM 401 CE1 TYR 38 3.209 7.718 7.018 1.00 0.00 C ATOM 402 CD2 TYR 38 0.452 7.842 6.850 1.00 0.00 C ATOM 403 CE2 TYR 38 1.184 9.012 6.931 1.00 0.00 C ATOM 404 N THR 39 -2.549 4.757 8.237 1.00 0.00 N ATOM 405 CA THR 39 -2.799 7.308 8.756 1.00 0.00 C ATOM 406 C THR 39 -2.388 6.264 9.799 1.00 0.00 C ATOM 407 O THR 39 -1.471 6.506 10.587 1.00 0.00 O ATOM 409 CB THR 39 -4.216 7.815 8.427 1.00 0.00 C ATOM 411 OG1 THR 39 -4.483 7.621 7.032 1.00 0.00 O ATOM 412 CG2 THR 39 -4.338 9.297 8.744 1.00 0.00 C ATOM 413 N LEU 40 -3.042 5.102 9.784 1.00 0.00 N ATOM 414 CA LEU 40 -2.460 3.852 10.346 1.00 0.00 C ATOM 415 C LEU 40 -2.196 2.755 10.159 1.00 0.00 C ATOM 416 O LEU 40 -2.588 1.658 10.570 1.00 0.00 O ATOM 418 CB LEU 40 -3.210 3.433 11.612 1.00 0.00 C ATOM 419 CG LEU 40 -2.928 4.256 12.871 1.00 0.00 C ATOM 420 CD1 LEU 40 -3.606 5.615 12.787 1.00 0.00 C ATOM 421 CD2 LEU 40 -3.389 3.512 14.114 1.00 0.00 C ATOM 422 N CYS 41 -1.322 2.869 9.163 1.00 0.00 N ATOM 423 CA CYS 41 -0.515 1.121 8.572 1.00 0.00 C ATOM 424 C CYS 41 0.214 2.892 13.659 1.00 0.00 C ATOM 425 O CYS 41 0.001 3.997 14.173 1.00 0.00 O ATOM 427 OXT CYS 41 0.645 2.317 14.665 1.00 0.00 O ATOM 428 CB CYS 41 0.403 1.334 7.367 1.00 0.00 C ATOM 429 SG CYS 41 1.129 -0.182 6.703 1.00 0.00 S TER END