####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS110_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 1 - 31 4.98 8.13 LCS_AVERAGE: 66.98 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 1.92 13.59 LCS_AVERAGE: 24.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 7 - 16 0.92 13.88 LCS_AVERAGE: 14.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 12 31 3 3 3 4 7 8 11 14 15 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT Q 2 Q 2 5 15 31 4 4 7 7 10 13 14 15 15 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT E 3 E 3 6 15 31 4 5 8 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT T 4 T 4 6 15 31 4 5 9 12 12 14 14 15 19 20 24 27 29 33 33 35 37 37 38 39 LCS_GDT R 5 R 5 7 15 31 4 5 8 12 12 14 14 15 16 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT K 6 K 6 9 15 31 3 6 9 12 12 14 14 15 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT K 7 K 7 10 15 31 6 8 9 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT C 8 C 8 10 15 31 6 8 9 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT T 9 T 9 10 15 31 6 8 9 12 12 14 14 15 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT E 10 E 10 10 15 31 6 8 9 12 12 14 14 15 19 20 24 27 29 33 33 35 37 37 38 39 LCS_GDT M 11 M 11 10 15 31 6 8 9 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT K 12 K 12 10 15 31 3 8 9 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT K 13 K 13 10 15 31 6 8 9 12 12 14 14 15 18 20 21 23 27 33 33 35 37 37 38 39 LCS_GDT K 14 K 14 10 15 31 4 8 9 12 12 14 14 15 19 20 24 27 29 33 33 35 37 37 38 39 LCS_GDT F 15 F 15 10 15 31 4 5 8 10 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT K 16 K 16 10 15 31 4 5 9 10 12 14 14 16 18 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT N 17 N 17 3 11 31 3 3 5 6 8 9 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT C 18 C 18 5 6 31 3 5 5 6 8 10 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT E 19 E 19 5 6 31 3 5 5 5 8 9 13 16 19 21 24 26 29 33 33 35 37 37 38 39 LCS_GDT V 20 V 20 5 6 31 3 5 5 6 8 10 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT R 21 R 21 5 6 31 3 5 5 6 8 9 13 15 19 21 24 26 29 33 33 35 37 37 38 39 LCS_GDT C 22 C 22 5 6 31 3 5 5 6 8 9 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT D 23 D 23 4 4 31 3 5 7 7 8 10 13 16 18 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT E 24 E 24 4 4 31 3 5 7 7 8 10 13 16 18 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT S 25 S 25 4 6 31 3 4 4 5 5 6 6 8 10 14 16 22 27 27 31 32 37 37 38 39 LCS_GDT N 26 N 26 4 6 31 3 4 4 5 5 6 8 10 14 20 21 24 27 33 33 35 37 37 38 39 LCS_GDT H 27 H 27 4 6 31 4 5 7 7 8 10 13 16 18 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT C 28 C 28 4 6 31 4 5 7 7 8 10 13 16 18 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT V 29 V 29 4 6 31 4 5 7 7 8 10 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT E 30 E 30 4 7 31 4 5 7 7 8 10 13 16 19 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT V 31 V 31 4 9 31 3 3 5 6 9 9 12 13 18 20 24 27 29 33 33 35 37 37 38 39 LCS_GDT R 32 R 32 4 9 30 3 3 5 7 9 9 12 13 13 16 20 22 28 33 33 35 37 37 38 39 LCS_GDT C 33 C 33 5 9 15 3 4 5 7 9 9 12 13 13 16 16 18 19 23 23 27 33 35 38 39 LCS_GDT S 34 S 34 5 9 15 3 4 5 7 9 9 12 13 13 16 16 18 19 23 23 24 27 32 36 37 LCS_GDT D 35 D 35 5 9 15 3 4 5 7 9 9 12 13 13 16 16 18 19 20 23 24 26 29 30 33 LCS_GDT T 36 T 36 5 9 15 3 4 5 7 9 9 12 13 13 16 16 18 19 20 24 26 29 34 37 39 LCS_GDT K 37 K 37 5 9 15 3 5 5 7 9 9 12 13 13 16 19 20 27 31 33 35 37 37 38 39 LCS_GDT Y 38 Y 38 5 9 15 3 5 5 7 9 9 12 13 13 16 19 24 28 32 33 35 37 37 38 39 LCS_GDT T 39 T 39 5 9 15 3 5 5 6 9 9 12 13 15 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT L 40 L 40 5 6 15 3 5 5 6 6 8 12 13 15 21 24 27 29 33 33 35 37 37 38 39 LCS_GDT C 41 C 41 5 6 15 0 5 5 6 6 8 12 13 13 16 18 20 21 28 31 34 37 37 38 39 LCS_AVERAGE LCS_A: 35.51 ( 14.81 24.75 66.98 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 9 12 12 14 14 16 19 21 24 27 29 33 33 35 37 37 38 39 GDT PERCENT_AT 14.63 19.51 21.95 29.27 29.27 34.15 34.15 39.02 46.34 51.22 58.54 65.85 70.73 80.49 80.49 85.37 90.24 90.24 92.68 95.12 GDT RMS_LOCAL 0.33 0.51 0.75 1.34 1.34 1.64 1.64 3.05 3.56 3.54 3.89 4.47 4.61 5.03 5.03 5.43 5.67 5.67 5.92 6.20 GDT RMS_ALL_AT 13.99 13.95 13.93 13.75 13.75 13.67 13.67 8.58 9.04 8.63 8.54 7.75 8.03 7.70 7.70 7.27 7.23 7.23 7.14 7.02 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 24 E 24 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.284 0 0.668 0.757 13.099 0.000 0.000 13.099 LGA Q 2 Q 2 8.225 0 0.212 1.355 14.110 0.000 0.000 12.875 LGA E 3 E 3 3.302 0 0.096 0.990 5.392 14.091 12.727 5.392 LGA T 4 T 4 6.369 0 0.233 1.119 11.199 0.455 0.260 9.316 LGA R 5 R 5 8.042 0 0.146 0.886 18.245 0.000 0.000 18.245 LGA K 6 K 6 4.889 0 0.448 1.609 11.659 14.545 6.465 11.659 LGA K 7 K 7 2.800 0 0.430 0.866 12.215 29.091 13.535 12.215 LGA C 8 C 8 4.437 0 0.210 0.865 9.429 17.273 11.515 9.429 LGA T 9 T 9 4.904 0 0.112 0.144 9.525 6.364 3.636 8.373 LGA E 10 E 10 5.786 0 0.109 1.119 10.944 2.727 1.212 10.944 LGA M 11 M 11 4.694 0 0.225 0.870 10.852 14.545 7.273 10.852 LGA K 12 K 12 2.005 0 0.093 0.971 12.369 37.273 17.172 12.369 LGA K 13 K 13 7.690 0 0.212 0.837 14.204 0.455 0.202 14.204 LGA K 14 K 14 7.994 0 0.141 0.931 15.219 0.000 0.000 15.219 LGA F 15 F 15 4.010 0 0.101 1.210 7.692 16.818 6.116 6.904 LGA K 16 K 16 3.011 0 0.281 1.066 11.908 32.273 14.343 11.908 LGA N 17 N 17 3.829 0 0.740 0.818 6.857 16.364 9.091 6.857 LGA C 18 C 18 2.978 0 0.607 0.532 6.408 25.000 18.485 6.408 LGA E 19 E 19 4.011 0 0.130 1.178 11.192 15.909 7.071 11.192 LGA V 20 V 20 1.805 0 0.209 0.987 5.357 30.455 21.558 3.769 LGA R 21 R 21 5.374 0 0.524 1.005 13.072 10.455 3.802 12.949 LGA C 22 C 22 3.998 0 0.177 0.159 8.058 11.364 7.576 8.058 LGA D 23 D 23 2.249 0 0.485 1.305 4.173 35.455 26.136 4.075 LGA E 24 E 24 3.727 0 0.188 0.573 6.612 7.273 17.980 3.305 LGA S 25 S 25 10.033 0 0.346 0.336 12.512 0.000 0.000 12.512 LGA N 26 N 26 7.945 0 0.098 0.691 9.281 0.000 0.000 7.389 LGA H 27 H 27 2.008 0 0.322 0.375 5.040 20.909 27.091 1.474 LGA C 28 C 28 2.418 0 0.258 0.268 5.771 44.545 30.606 5.771 LGA V 29 V 29 2.776 0 0.378 1.277 7.174 28.636 16.623 5.415 LGA E 30 E 30 2.309 0 0.519 1.186 8.531 27.273 15.354 8.531 LGA V 31 V 31 5.654 0 0.142 1.043 9.969 4.545 2.597 9.969 LGA R 32 R 32 8.833 0 0.118 1.044 12.053 0.000 0.000 7.280 LGA C 33 C 33 13.443 0 0.605 0.867 15.172 0.000 0.000 13.271 LGA S 34 S 34 19.480 0 0.243 0.747 22.110 0.000 0.000 22.110 LGA D 35 D 35 22.490 0 0.123 1.024 25.743 0.000 0.000 24.797 LGA T 36 T 36 17.318 0 0.695 0.874 18.751 0.000 0.000 16.514 LGA K 37 K 37 14.758 0 0.403 1.439 22.583 0.000 0.000 22.583 LGA Y 38 Y 38 11.961 0 0.085 1.161 13.653 0.000 0.000 13.653 LGA T 39 T 39 9.050 0 0.064 0.989 10.947 0.000 0.000 9.440 LGA L 40 L 40 8.265 0 0.608 1.167 9.999 0.000 0.227 4.744 LGA C 41 C 41 12.876 0 0.680 0.888 16.982 0.000 0.000 13.561 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 6.897 6.748 8.401 11.319 7.284 2.483 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 16 3.05 43.293 38.482 0.508 LGA_LOCAL RMSD: 3.048 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.581 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.897 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.285196 * X + -0.444161 * Y + -0.849343 * Z + -0.802577 Y_new = 0.022336 * X + -0.888985 * Y + 0.457392 * Z + -0.391760 Z_new = -0.958209 * X + 0.111475 * Y + 0.263456 * Z + 0.954629 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 3.063434 1.280674 0.400283 [DEG: 175.5218 73.3772 22.9346 ] ZXZ: -2.064786 1.304193 -1.454980 [DEG: -118.3035 74.7248 -83.3642 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS110_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 16 3.05 38.482 6.90 REMARK ---------------------------------------------------------- MOLECULE T0955TS110_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 4.776 -8.605 -4.045 1.00 0.00 N ATOM 2 CA SER 1 5.157 -7.221 -4.013 1.00 0.00 C ATOM 3 C SER 1 4.199 -6.307 -3.306 1.00 0.00 C ATOM 4 O SER 1 4.635 -5.284 -2.823 1.00 0.00 O ATOM 8 CB SER 1 5.350 -6.685 -5.434 1.00 0.00 C ATOM 10 OG SER 1 4.123 -6.660 -6.141 1.00 0.00 O ATOM 11 N GLN 2 2.910 -6.635 -3.313 1.00 0.00 N ATOM 12 CA GLN 2 1.935 -5.757 -2.734 1.00 0.00 C ATOM 13 C GLN 2 2.132 -5.855 -1.226 1.00 0.00 C ATOM 14 O GLN 2 1.939 -4.906 -0.477 1.00 0.00 O ATOM 16 CB GLN 2 0.526 -6.154 -3.178 1.00 0.00 C ATOM 17 CD GLN 2 0.756 -7.118 -5.501 1.00 0.00 C ATOM 18 CG GLN 2 0.263 -5.956 -4.661 1.00 0.00 C ATOM 19 OE1 GLN 2 1.718 -7.794 -5.137 1.00 0.00 O ATOM 22 NE2 GLN 2 0.095 -7.354 -6.629 1.00 0.00 N ATOM 23 N GLU 3 2.515 -7.034 -0.752 1.00 0.00 N ATOM 24 CA GLU 3 2.511 -7.368 0.763 1.00 0.00 C ATOM 25 C GLU 3 3.766 -6.639 1.230 1.00 0.00 C ATOM 26 O GLU 3 3.967 -6.430 2.426 1.00 0.00 O ATOM 28 CB GLU 3 2.520 -8.884 0.977 1.00 0.00 C ATOM 29 CD GLU 3 3.904 -9.873 -0.889 1.00 0.00 C ATOM 30 CG GLU 3 3.827 -9.557 0.591 1.00 0.00 C ATOM 31 OE1 GLU 3 2.922 -10.425 -1.430 1.00 0.00 O ATOM 32 OE2 GLU 3 4.946 -9.572 -1.509 1.00 0.00 O ATOM 33 N THR 4 4.604 -6.238 0.280 1.00 0.00 N ATOM 34 CA THR 4 5.855 -5.498 0.605 1.00 0.00 C ATOM 35 C THR 4 5.303 -4.077 0.567 1.00 0.00 C ATOM 36 O THR 4 5.087 -3.537 1.637 1.00 0.00 O ATOM 38 CB THR 4 6.975 -5.810 -0.405 1.00 0.00 C ATOM 40 OG1 THR 4 7.279 -7.211 -0.368 1.00 0.00 O ATOM 41 CG2 THR 4 8.234 -5.029 -0.063 1.00 0.00 C ATOM 42 N ARG 5 4.797 -3.709 -0.599 1.00 0.00 N ATOM 43 CA ARG 5 4.370 -2.403 -0.834 1.00 0.00 C ATOM 44 C ARG 5 3.005 -2.582 -0.177 1.00 0.00 C ATOM 45 O ARG 5 2.385 -1.597 0.230 1.00 0.00 O ATOM 47 CB ARG 5 4.410 -2.086 -2.330 1.00 0.00 C ATOM 48 CD ARG 5 5.766 -1.890 -4.433 1.00 0.00 C ATOM 50 NE ARG 5 5.127 -3.018 -5.106 1.00 0.00 N ATOM 51 CG ARG 5 5.808 -2.077 -2.926 1.00 0.00 C ATOM 52 CZ ARG 5 4.795 -3.029 -6.394 1.00 0.00 C ATOM 55 NH1 ARG 5 4.216 -4.100 -6.919 1.00 0.00 N ATOM 58 NH2 ARG 5 5.041 -1.969 -7.151 1.00 0.00 N ATOM 59 N LYS 6 2.534 -3.815 -0.036 1.00 0.00 N ATOM 60 CA LYS 6 1.240 -3.982 0.547 1.00 0.00 C ATOM 61 C LYS 6 1.654 -4.700 1.839 1.00 0.00 C ATOM 62 O LYS 6 1.093 -5.725 2.240 1.00 0.00 O ATOM 64 CB LYS 6 0.322 -4.760 -0.398 1.00 0.00 C ATOM 65 CD LYS 6 0.726 -3.410 -2.475 1.00 0.00 C ATOM 66 CE LYS 6 0.077 -2.646 -3.618 1.00 0.00 C ATOM 67 CG LYS 6 -0.314 -3.910 -1.485 1.00 0.00 C ATOM 71 NZ LYS 6 1.090 -2.002 -4.500 1.00 0.00 N ATOM 72 N LYS 7 2.680 -4.090 2.443 1.00 0.00 N ATOM 73 CA LYS 7 2.783 -5.106 3.779 1.00 0.00 C ATOM 74 C LYS 7 3.482 -3.752 3.847 1.00 0.00 C ATOM 75 O LYS 7 3.513 -3.131 4.912 1.00 0.00 O ATOM 77 CB LYS 7 3.395 -6.451 3.383 1.00 0.00 C ATOM 78 CD LYS 7 2.115 -7.913 4.970 1.00 0.00 C ATOM 79 CE LYS 7 2.215 -8.996 6.033 1.00 0.00 C ATOM 80 CG LYS 7 3.492 -7.450 4.524 1.00 0.00 C ATOM 84 NZ LYS 7 0.873 -9.414 6.527 1.00 0.00 N ATOM 85 N CYS 8 4.014 -3.264 2.734 1.00 0.00 N ATOM 86 CA CYS 8 4.954 -2.146 2.939 1.00 0.00 C ATOM 87 C CYS 8 3.986 -1.082 2.442 1.00 0.00 C ATOM 88 O CYS 8 4.256 0.107 2.573 1.00 0.00 O ATOM 90 CB CYS 8 6.244 -2.379 2.149 1.00 0.00 C ATOM 91 SG CYS 8 7.166 -3.854 2.641 1.00 0.00 S ATOM 92 N THR 9 2.862 -1.500 1.872 1.00 0.00 N ATOM 93 CA THR 9 1.848 -0.510 1.301 1.00 0.00 C ATOM 94 C THR 9 0.892 -0.148 2.429 1.00 0.00 C ATOM 95 O THR 9 0.258 0.913 2.367 1.00 0.00 O ATOM 97 CB THR 9 1.100 -1.103 0.092 1.00 0.00 C ATOM 99 OG1 THR 9 2.035 -1.412 -0.948 1.00 0.00 O ATOM 100 CG2 THR 9 0.085 -0.105 -0.447 1.00 0.00 C ATOM 101 N GLU 10 0.794 -0.918 3.493 1.00 0.00 N ATOM 102 CA GLU 10 -0.159 -0.698 4.556 1.00 0.00 C ATOM 103 C GLU 10 0.556 0.348 5.403 1.00 0.00 C ATOM 104 O GLU 10 -0.069 1.356 5.685 1.00 0.00 O ATOM 106 CB GLU 10 -0.469 -2.011 5.278 1.00 0.00 C ATOM 107 CD GLU 10 0.376 -3.903 6.723 1.00 0.00 C ATOM 108 CG GLU 10 0.694 -2.565 6.086 1.00 0.00 C ATOM 109 OE1 GLU 10 -0.746 -4.409 6.513 1.00 0.00 O ATOM 110 OE2 GLU 10 1.248 -4.445 7.433 1.00 0.00 O ATOM 111 N MET 11 1.873 0.217 5.454 1.00 0.00 N ATOM 112 CA MET 11 2.684 0.854 6.553 1.00 0.00 C ATOM 113 C MET 11 2.748 2.043 5.601 1.00 0.00 C ATOM 114 O MET 11 2.763 3.154 6.102 1.00 0.00 O ATOM 116 CB MET 11 3.909 -0.003 6.879 1.00 0.00 C ATOM 117 SD MET 11 2.627 -1.244 8.999 1.00 0.00 S ATOM 118 CE MET 11 3.843 -0.523 10.098 1.00 0.00 C ATOM 119 CG MET 11 3.575 -1.364 7.471 1.00 0.00 C ATOM 120 N LYS 12 2.436 1.767 4.345 1.00 0.00 N ATOM 121 CA LYS 12 2.349 2.850 3.243 1.00 0.00 C ATOM 122 C LYS 12 1.153 3.642 3.737 1.00 0.00 C ATOM 123 O LYS 12 1.124 4.880 3.634 1.00 0.00 O ATOM 125 CB LYS 12 2.192 2.202 1.866 1.00 0.00 C ATOM 126 CD LYS 12 4.601 2.376 1.183 1.00 0.00 C ATOM 127 CE LYS 12 5.801 1.631 0.623 1.00 0.00 C ATOM 128 CG LYS 12 3.420 1.442 1.394 1.00 0.00 C ATOM 132 NZ LYS 12 6.979 2.525 0.450 1.00 0.00 N ATOM 133 N LYS 13 0.121 3.006 4.259 1.00 0.00 N ATOM 134 CA LYS 13 -1.317 3.655 4.327 1.00 0.00 C ATOM 135 C LYS 13 -0.804 4.240 5.625 1.00 0.00 C ATOM 136 O LYS 13 -1.245 5.316 6.019 1.00 0.00 O ATOM 138 CB LYS 13 -2.397 2.572 4.278 1.00 0.00 C ATOM 139 CD LYS 13 -3.523 0.736 2.991 1.00 0.00 C ATOM 140 CE LYS 13 -4.937 1.272 3.141 1.00 0.00 C ATOM 141 CG LYS 13 -2.506 1.863 2.938 1.00 0.00 C ATOM 145 NZ LYS 13 -5.953 0.185 3.092 1.00 0.00 N ATOM 146 N LYS 14 0.126 3.556 6.284 1.00 0.00 N ATOM 147 CA LYS 14 0.277 4.022 7.724 1.00 0.00 C ATOM 148 C LYS 14 1.720 4.471 7.533 1.00 0.00 C ATOM 149 O LYS 14 2.155 5.412 8.209 1.00 0.00 O ATOM 151 CB LYS 14 -0.010 2.873 8.692 1.00 0.00 C ATOM 152 CD LYS 14 -0.332 2.105 11.059 1.00 0.00 C ATOM 153 CE LYS 14 -0.248 2.492 12.528 1.00 0.00 C ATOM 154 CG LYS 14 0.059 3.265 10.159 1.00 0.00 C ATOM 158 NZ LYS 14 -0.621 1.362 13.422 1.00 0.00 N ATOM 159 N PHE 15 2.475 3.914 6.609 1.00 0.00 N ATOM 160 CA PHE 15 3.793 4.301 6.331 1.00 0.00 C ATOM 161 C PHE 15 3.577 5.045 5.035 1.00 0.00 C ATOM 162 O PHE 15 4.295 4.765 4.066 1.00 0.00 O ATOM 164 CB PHE 15 4.707 3.077 6.252 1.00 0.00 C ATOM 165 CG PHE 15 6.160 3.414 6.076 1.00 0.00 C ATOM 166 CZ PHE 15 8.848 4.039 5.745 1.00 0.00 C ATOM 167 CD1 PHE 15 6.909 3.888 7.139 1.00 0.00 C ATOM 168 CE1 PHE 15 8.245 4.199 6.978 1.00 0.00 C ATOM 169 CD2 PHE 15 6.776 3.260 4.847 1.00 0.00 C ATOM 170 CE2 PHE 15 8.114 3.572 4.686 1.00 0.00 C ATOM 171 N LYS 16 2.576 5.860 4.956 1.00 0.00 N ATOM 172 CA LYS 16 2.935 6.537 3.418 1.00 0.00 C ATOM 173 C LYS 16 1.672 7.354 3.761 1.00 0.00 C ATOM 174 O LYS 16 1.525 8.495 3.329 1.00 0.00 O ATOM 176 CB LYS 16 2.972 5.445 2.347 1.00 0.00 C ATOM 177 CD LYS 16 4.756 6.433 0.885 1.00 0.00 C ATOM 178 CE LYS 16 5.136 6.834 -0.532 1.00 0.00 C ATOM 179 CG LYS 16 3.317 5.952 0.956 1.00 0.00 C ATOM 183 NZ LYS 16 6.523 7.371 -0.604 1.00 0.00 N ATOM 184 N ASN 17 0.813 6.795 4.602 1.00 0.00 N ATOM 185 CA ASN 17 -0.496 7.471 4.879 1.00 0.00 C ATOM 186 C ASN 17 -0.712 7.597 3.379 1.00 0.00 C ATOM 187 O ASN 17 0.147 8.098 2.667 1.00 0.00 O ATOM 189 CB ASN 17 -0.286 8.705 5.758 1.00 0.00 C ATOM 190 CG ASN 17 0.185 8.351 7.155 1.00 0.00 C ATOM 191 OD1 ASN 17 -0.249 7.355 7.733 1.00 0.00 O ATOM 194 ND2 ASN 17 1.077 9.169 7.703 1.00 0.00 N ATOM 195 N CYS 18 -1.864 7.141 2.903 1.00 0.00 N ATOM 196 CA CYS 18 -2.527 7.611 1.667 1.00 0.00 C ATOM 197 C CYS 18 -1.533 6.827 0.817 1.00 0.00 C ATOM 198 O CYS 18 -1.855 6.589 -0.334 1.00 0.00 O ATOM 200 CB CYS 18 -2.540 9.140 1.614 1.00 0.00 C ATOM 201 SG CYS 18 -3.374 9.929 3.010 1.00 0.00 S ATOM 202 N GLU 19 -0.593 6.195 1.502 1.00 0.00 N ATOM 203 CA GLU 19 0.074 4.820 0.854 1.00 0.00 C ATOM 204 C GLU 19 -0.429 3.422 1.228 1.00 0.00 C ATOM 205 O GLU 19 0.022 2.832 2.214 1.00 0.00 O ATOM 207 CB GLU 19 1.575 4.765 1.146 1.00 0.00 C ATOM 208 CD GLU 19 2.472 5.598 -1.064 1.00 0.00 C ATOM 209 CG GLU 19 2.386 5.834 0.431 1.00 0.00 C ATOM 210 OE1 GLU 19 1.413 5.388 -1.694 1.00 0.00 O ATOM 211 OE2 GLU 19 3.596 5.624 -1.606 1.00 0.00 O ATOM 212 N VAL 20 -1.371 2.901 0.441 1.00 0.00 N ATOM 213 CA VAL 20 -2.048 1.773 0.885 1.00 0.00 C ATOM 214 C VAL 20 -2.099 0.668 -0.164 1.00 0.00 C ATOM 215 O VAL 20 -3.142 0.405 -0.763 1.00 0.00 O ATOM 217 CB VAL 20 -3.485 2.113 1.322 1.00 0.00 C ATOM 218 CG1 VAL 20 -3.472 2.976 2.574 1.00 0.00 C ATOM 219 CG2 VAL 20 -4.233 2.811 0.197 1.00 0.00 C ATOM 220 N ARG 21 -0.923 0.090 -0.437 1.00 0.00 N ATOM 221 CA ARG 21 -0.160 -0.298 -1.731 1.00 0.00 C ATOM 222 C ARG 21 -1.087 -1.433 -2.138 1.00 0.00 C ATOM 223 O ARG 21 -1.774 -1.349 -3.160 1.00 0.00 O ATOM 225 CB ARG 21 1.292 -0.654 -1.409 1.00 0.00 C ATOM 226 CD ARG 21 2.271 0.124 -3.586 1.00 0.00 C ATOM 228 NE ARG 21 3.097 -0.223 -4.741 1.00 0.00 N ATOM 229 CG ARG 21 2.119 -1.043 -2.624 1.00 0.00 C ATOM 230 CZ ARG 21 3.220 0.536 -5.825 1.00 0.00 C ATOM 233 NH1 ARG 21 3.994 0.139 -6.827 1.00 0.00 N ATOM 236 NH2 ARG 21 2.571 1.688 -5.906 1.00 0.00 N ATOM 237 N CYS 22 -1.097 -2.499 -1.346 1.00 0.00 N ATOM 238 CA CYS 22 -1.777 -3.747 -1.729 1.00 0.00 C ATOM 239 C CYS 22 -2.807 -3.514 -0.668 1.00 0.00 C ATOM 240 O CYS 22 -2.490 -3.344 0.510 1.00 0.00 O ATOM 242 CB CYS 22 -0.818 -4.934 -1.622 1.00 0.00 C ATOM 243 SG CYS 22 0.621 -4.833 -2.712 1.00 0.00 S ATOM 244 N ASP 23 -4.057 -3.496 -1.101 1.00 0.00 N ATOM 245 CA ASP 23 -5.198 -3.472 -0.159 1.00 0.00 C ATOM 246 C ASP 23 -5.207 -4.621 0.844 1.00 0.00 C ATOM 247 O ASP 23 -5.078 -4.331 2.020 1.00 0.00 O ATOM 249 CB ASP 23 -6.524 -3.490 -0.922 1.00 0.00 C ATOM 250 CG ASP 23 -7.726 -3.374 -0.006 1.00 0.00 C ATOM 251 OD1 ASP 23 -7.855 -2.335 0.677 1.00 0.00 O ATOM 252 OD2 ASP 23 -8.539 -4.322 0.031 1.00 0.00 O ATOM 253 N GLU 24 -5.008 -5.819 0.318 1.00 0.00 N ATOM 254 CA GLU 24 -5.383 -7.088 1.060 1.00 0.00 C ATOM 255 C GLU 24 -4.391 -7.988 1.770 1.00 0.00 C ATOM 256 O GLU 24 -4.774 -9.012 2.377 1.00 0.00 O ATOM 258 CB GLU 24 -6.106 -8.061 0.126 1.00 0.00 C ATOM 259 CD GLU 24 -8.128 -8.538 -1.311 1.00 0.00 C ATOM 260 CG GLU 24 -7.444 -7.551 -0.385 1.00 0.00 C ATOM 261 OE1 GLU 24 -7.524 -9.591 -1.608 1.00 0.00 O ATOM 262 OE2 GLU 24 -9.267 -8.260 -1.739 1.00 0.00 O ATOM 263 N SER 25 -3.113 -7.635 1.704 1.00 0.00 N ATOM 264 CA SER 25 -1.766 -5.888 1.438 1.00 0.00 C ATOM 265 C SER 25 -1.094 -6.305 0.144 1.00 0.00 C ATOM 266 O SER 25 -0.293 -5.547 -0.430 1.00 0.00 O ATOM 268 CB SER 25 -0.853 -5.725 2.655 1.00 0.00 C ATOM 270 OG SER 25 -1.606 -5.468 3.827 1.00 0.00 O ATOM 271 N ASN 26 -1.340 -7.498 -0.364 1.00 0.00 N ATOM 272 CA ASN 26 -0.703 -7.939 -1.453 1.00 0.00 C ATOM 273 C ASN 26 -1.352 -7.467 -2.745 1.00 0.00 C ATOM 274 O ASN 26 -0.658 -7.215 -3.731 1.00 0.00 O ATOM 276 CB ASN 26 -0.622 -9.467 -1.444 1.00 0.00 C ATOM 277 CG ASN 26 -1.988 -10.123 -1.475 1.00 0.00 C ATOM 278 OD1 ASN 26 -2.797 -9.938 -0.565 1.00 0.00 O ATOM 281 ND2 ASN 26 -2.250 -10.894 -2.525 1.00 0.00 N ATOM 282 N HIS 27 -2.671 -7.332 -2.749 1.00 0.00 N ATOM 283 CA HIS 27 -3.313 -6.765 -3.908 1.00 0.00 C ATOM 284 C HIS 27 -3.667 -5.307 -4.081 1.00 0.00 C ATOM 285 O HIS 27 -4.652 -4.855 -3.516 1.00 0.00 O ATOM 287 CB HIS 27 -4.655 -7.454 -4.168 1.00 0.00 C ATOM 288 CG HIS 27 -4.532 -8.906 -4.512 1.00 0.00 C ATOM 289 ND1 HIS 27 -3.969 -9.346 -5.690 1.00 0.00 N ATOM 290 CE1 HIS 27 -4.000 -10.690 -5.714 1.00 0.00 C ATOM 291 CD2 HIS 27 -4.889 -10.159 -3.864 1.00 0.00 C ATOM 293 NE2 HIS 27 -4.551 -11.185 -4.621 1.00 0.00 N ATOM 294 N CYS 28 -2.821 -4.564 -4.798 1.00 0.00 N ATOM 295 CA CYS 28 -3.602 -3.154 -5.131 1.00 0.00 C ATOM 296 C CYS 28 -2.770 -1.928 -4.778 1.00 0.00 C ATOM 297 O CYS 28 -2.965 -1.292 -3.742 1.00 0.00 O ATOM 299 CB CYS 28 -4.936 -3.093 -4.384 1.00 0.00 C ATOM 300 SG CYS 28 -6.141 -4.338 -4.902 1.00 0.00 S ATOM 301 N VAL 29 -1.826 -1.603 -5.648 1.00 0.00 N ATOM 302 CA VAL 29 -0.918 -0.467 -5.443 1.00 0.00 C ATOM 303 C VAL 29 -2.186 0.320 -5.731 1.00 0.00 C ATOM 304 O VAL 29 -3.090 -0.175 -6.389 1.00 0.00 O ATOM 306 CB VAL 29 0.284 -0.524 -6.405 1.00 0.00 C ATOM 307 CG1 VAL 29 1.090 -1.794 -6.176 1.00 0.00 C ATOM 308 CG2 VAL 29 -0.186 -0.438 -7.849 1.00 0.00 C ATOM 309 N GLU 30 -2.248 1.550 -5.235 1.00 0.00 N ATOM 310 CA GLU 30 -2.622 2.871 -6.163 1.00 0.00 C ATOM 311 C GLU 30 -3.642 1.910 -5.577 1.00 0.00 C ATOM 312 O GLU 30 -4.791 1.926 -5.989 1.00 0.00 O ATOM 314 CB GLU 30 -1.925 2.787 -7.522 1.00 0.00 C ATOM 315 CD GLU 30 0.248 2.697 -8.805 1.00 0.00 C ATOM 316 CG GLU 30 -0.410 2.719 -7.440 1.00 0.00 C ATOM 317 OE1 GLU 30 -0.462 2.915 -9.810 1.00 0.00 O ATOM 318 OE2 GLU 30 1.473 2.462 -8.871 1.00 0.00 O ATOM 319 N VAL 31 -3.246 1.069 -4.608 1.00 0.00 N ATOM 320 CA VAL 31 -4.223 0.267 -3.840 1.00 0.00 C ATOM 321 C VAL 31 -4.166 0.480 -2.333 1.00 0.00 C ATOM 322 O VAL 31 -3.262 1.125 -1.799 1.00 0.00 O ATOM 324 CB VAL 31 -4.054 -1.240 -4.111 1.00 0.00 C ATOM 325 CG1 VAL 31 -4.277 -1.543 -5.584 1.00 0.00 C ATOM 326 CG2 VAL 31 -2.677 -1.709 -3.670 1.00 0.00 C ATOM 327 N ARG 32 -5.173 -0.033 -1.632 1.00 0.00 N ATOM 328 CA ARG 32 -5.268 0.130 -0.258 1.00 0.00 C ATOM 329 C ARG 32 -4.804 -1.021 0.626 1.00 0.00 C ATOM 330 O ARG 32 -5.344 -2.123 0.554 1.00 0.00 O ATOM 332 CB ARG 32 -6.712 0.432 0.148 1.00 0.00 C ATOM 333 CD ARG 32 -8.726 1.912 -0.087 1.00 0.00 C ATOM 335 NE ARG 32 -9.540 0.935 -0.805 1.00 0.00 N ATOM 336 CG ARG 32 -7.245 1.751 -0.389 1.00 0.00 C ATOM 337 CZ ARG 32 -10.820 0.691 -0.542 1.00 0.00 C ATOM 340 NH1 ARG 32 -11.481 -0.216 -1.248 1.00 0.00 N ATOM 343 NH2 ARG 32 -11.435 1.355 0.427 1.00 0.00 N ATOM 344 N CYS 33 -3.778 -0.760 1.437 1.00 0.00 N ATOM 345 CA CYS 33 -2.996 -1.644 2.171 1.00 0.00 C ATOM 346 C CYS 33 -4.049 -1.802 3.224 1.00 0.00 C ATOM 347 O CYS 33 -4.628 -0.826 3.705 1.00 0.00 O ATOM 349 CB CYS 33 -1.661 -0.996 2.542 1.00 0.00 C ATOM 350 SG CYS 33 -0.545 -2.068 3.478 1.00 0.00 S ATOM 351 N SER 34 -4.303 -3.052 3.573 1.00 0.00 N ATOM 352 CA SER 34 -5.245 -3.404 4.706 1.00 0.00 C ATOM 353 C SER 34 -4.723 -2.986 6.074 1.00 0.00 C ATOM 354 O SER 34 -5.499 -2.830 7.010 1.00 0.00 O ATOM 356 CB SER 34 -5.527 -4.908 4.722 1.00 0.00 C ATOM 358 OG SER 34 -4.368 -5.640 5.077 1.00 0.00 O ATOM 359 N ASP 35 -3.413 -2.805 6.194 1.00 0.00 N ATOM 360 CA ASP 35 -2.892 -2.656 7.465 1.00 0.00 C ATOM 361 C ASP 35 -2.891 -1.139 7.590 1.00 0.00 C ATOM 362 O ASP 35 -2.700 -0.649 8.701 1.00 0.00 O ATOM 364 CB ASP 35 -1.520 -3.327 7.563 1.00 0.00 C ATOM 365 CG ASP 35 -1.036 -3.456 8.994 1.00 0.00 C ATOM 366 OD1 ASP 35 -1.761 -4.056 9.814 1.00 0.00 O ATOM 367 OD2 ASP 35 0.069 -2.957 9.294 1.00 0.00 O ATOM 368 N THR 36 -2.969 -0.427 6.464 1.00 0.00 N ATOM 369 CA THR 36 -2.915 1.113 6.461 1.00 0.00 C ATOM 370 C THR 36 -4.095 2.019 6.188 1.00 0.00 C ATOM 371 O THR 36 -4.025 3.201 6.537 1.00 0.00 O ATOM 373 CB THR 36 -1.885 1.640 5.444 1.00 0.00 C ATOM 375 OG1 THR 36 -2.257 1.227 4.124 1.00 0.00 O ATOM 376 CG2 THR 36 -0.501 1.088 5.754 1.00 0.00 C ATOM 377 N LYS 37 -5.085 1.496 5.465 1.00 0.00 N ATOM 378 CA LYS 37 -6.371 2.163 5.271 1.00 0.00 C ATOM 379 C LYS 37 -6.000 3.443 4.541 1.00 0.00 C ATOM 380 O LYS 37 -6.620 4.468 4.771 1.00 0.00 O ATOM 382 CB LYS 37 -7.064 2.390 6.616 1.00 0.00 C ATOM 383 CD LYS 37 -8.123 1.406 8.667 1.00 0.00 C ATOM 384 CE LYS 37 -8.405 0.131 9.445 1.00 0.00 C ATOM 385 CG LYS 37 -7.367 1.113 7.382 1.00 0.00 C ATOM 389 NZ LYS 37 -9.093 0.409 10.737 1.00 0.00 N ATOM 390 N TYR 38 -4.996 3.404 3.650 1.00 0.00 N ATOM 391 CA TYR 38 -4.662 4.621 2.737 1.00 0.00 C ATOM 392 C TYR 38 -4.449 4.334 1.265 1.00 0.00 C ATOM 393 O TYR 38 -3.914 3.284 0.896 1.00 0.00 O ATOM 395 CB TYR 38 -3.405 5.337 3.236 1.00 0.00 C ATOM 396 CG TYR 38 -3.546 5.925 4.623 1.00 0.00 C ATOM 398 OH TYR 38 -3.923 7.531 8.439 1.00 0.00 O ATOM 399 CZ TYR 38 -3.800 7.001 7.176 1.00 0.00 C ATOM 400 CD1 TYR 38 -2.843 5.392 5.696 1.00 0.00 C ATOM 401 CE1 TYR 38 -2.966 5.923 6.966 1.00 0.00 C ATOM 402 CD2 TYR 38 -4.382 7.010 4.853 1.00 0.00 C ATOM 403 CE2 TYR 38 -4.517 7.554 6.116 1.00 0.00 C ATOM 404 N THR 39 -4.898 5.258 0.425 1.00 0.00 N ATOM 405 CA THR 39 -4.787 5.121 -1.139 1.00 0.00 C ATOM 406 C THR 39 -3.427 5.407 -1.764 1.00 0.00 C ATOM 407 O THR 39 -2.954 6.544 -1.733 1.00 0.00 O ATOM 409 CB THR 39 -5.789 6.044 -1.859 1.00 0.00 C ATOM 411 OG1 THR 39 -5.573 7.400 -1.449 1.00 0.00 O ATOM 412 CG2 THR 39 -7.217 5.652 -1.513 1.00 0.00 C ATOM 413 N LEU 40 -2.800 4.384 -2.341 1.00 0.00 N ATOM 414 CA LEU 40 -1.312 4.371 -2.708 1.00 0.00 C ATOM 415 C LEU 40 -1.489 5.568 -4.085 1.00 0.00 C ATOM 416 O LEU 40 -0.491 6.239 -4.339 1.00 0.00 O ATOM 418 CB LEU 40 -0.854 2.949 -3.038 1.00 0.00 C ATOM 419 CG LEU 40 0.628 2.774 -3.372 1.00 0.00 C ATOM 420 CD1 LEU 40 1.498 3.210 -2.202 1.00 0.00 C ATOM 421 CD2 LEU 40 0.929 1.330 -3.745 1.00 0.00 C ATOM 422 N CYS 41 -2.653 5.742 -4.713 1.00 0.00 N ATOM 423 CA CYS 41 -3.012 6.559 -5.324 1.00 0.00 C ATOM 424 C CYS 41 -1.415 8.614 -3.879 1.00 0.00 C ATOM 425 O CYS 41 -0.688 9.529 -4.269 1.00 0.00 O ATOM 427 OXT CYS 41 -1.249 8.848 -2.680 1.00 0.00 O ATOM 428 CB CYS 41 -4.539 6.644 -5.264 1.00 0.00 C ATOM 429 SG CYS 41 -5.259 7.925 -6.315 1.00 0.00 S TER END