####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS110_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 1 - 29 4.86 7.76 LONGEST_CONTINUOUS_SEGMENT: 29 2 - 30 4.90 7.56 LONGEST_CONTINUOUS_SEGMENT: 29 3 - 31 4.98 7.44 LCS_AVERAGE: 61.81 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 4 - 16 1.68 9.18 LCS_AVERAGE: 23.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 9 - 16 1.00 9.41 LCS_AVERAGE: 13.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 29 3 3 4 5 5 5 5 6 6 7 8 8 18 21 29 30 33 33 34 35 LCS_GDT Q 2 Q 2 4 5 29 3 3 4 5 5 7 9 12 18 19 20 23 25 27 30 31 33 33 34 35 LCS_GDT E 3 E 3 4 11 29 3 3 4 5 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT T 4 T 4 6 13 29 3 5 8 9 13 13 15 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT R 5 R 5 7 13 29 4 5 8 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 6 K 6 7 13 29 4 5 8 9 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 7 K 7 7 13 29 4 5 8 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT C 8 C 8 7 13 29 4 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT T 9 T 9 8 13 29 4 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT E 10 E 10 8 13 29 4 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT M 11 M 11 8 13 29 4 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 12 K 12 8 13 29 5 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 13 K 13 8 13 29 5 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 14 K 14 8 13 29 5 5 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT F 15 F 15 8 13 29 5 5 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT K 16 K 16 8 13 29 5 5 9 10 13 17 18 19 20 21 24 25 26 29 30 32 33 33 34 35 LCS_GDT N 17 N 17 4 7 29 3 3 5 7 9 11 15 17 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT C 18 C 18 4 7 29 3 3 5 7 7 10 12 15 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT E 19 E 19 4 7 29 3 3 5 7 8 11 13 15 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT V 20 V 20 4 7 29 3 4 6 9 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT R 21 R 21 7 11 29 3 6 8 9 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT C 22 C 22 7 11 29 3 6 8 10 12 17 18 19 20 21 24 25 26 29 30 32 33 33 34 35 LCS_GDT D 23 D 23 7 11 29 4 6 8 9 10 11 16 19 20 21 24 25 26 29 30 32 33 33 34 35 LCS_GDT E 24 E 24 7 11 29 4 6 8 9 10 11 13 14 18 20 21 23 25 27 29 30 33 33 34 35 LCS_GDT S 25 S 25 7 11 29 4 6 8 9 10 11 13 14 14 14 14 17 20 21 26 29 31 31 34 35 LCS_GDT N 26 N 26 7 11 29 4 6 8 9 10 11 13 14 14 14 22 25 26 29 30 32 33 33 34 35 LCS_GDT H 27 H 27 7 11 29 4 6 8 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT C 28 C 28 4 11 29 3 4 4 8 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT V 29 V 29 3 11 29 3 3 7 9 10 11 13 14 18 22 23 25 26 29 30 32 33 33 34 35 LCS_GDT E 30 E 30 3 11 29 3 3 8 9 10 11 13 14 14 20 23 25 25 29 30 32 33 33 34 35 LCS_GDT V 31 V 31 4 11 29 3 3 4 5 10 11 13 14 15 20 22 25 26 29 30 32 33 33 34 35 LCS_GDT R 32 R 32 4 6 18 3 3 4 5 7 8 9 9 11 14 14 15 24 25 27 32 32 32 34 35 LCS_GDT C 33 C 33 4 6 18 3 4 4 5 5 8 9 9 11 14 14 14 18 25 30 32 32 32 34 34 LCS_GDT S 34 S 34 4 6 13 3 4 4 5 7 8 9 9 11 14 14 14 17 18 20 21 21 25 27 32 LCS_GDT D 35 D 35 4 6 13 3 4 4 5 7 8 9 9 11 14 14 15 18 20 30 32 32 32 33 34 LCS_GDT T 36 T 36 4 6 13 3 4 4 5 5 8 9 9 11 11 14 25 26 29 30 32 32 32 34 35 LCS_GDT K 37 K 37 4 6 13 3 4 4 5 7 8 10 15 20 22 24 25 26 29 30 32 33 33 34 35 LCS_GDT Y 38 Y 38 4 6 13 3 4 4 5 7 8 9 12 16 19 21 23 26 29 30 31 33 33 34 35 LCS_GDT T 39 T 39 3 6 13 3 3 4 5 7 8 9 9 11 11 14 18 24 25 29 31 33 33 34 35 LCS_GDT L 40 L 40 3 5 13 3 3 4 4 4 5 7 9 11 11 12 15 16 18 20 24 26 27 32 34 LCS_GDT C 41 C 41 0 4 13 0 2 4 4 4 4 5 5 6 10 12 13 15 18 20 21 21 25 29 32 LCS_AVERAGE LCS_A: 32.86 ( 13.21 23.56 61.81 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 6 9 10 13 17 18 19 20 22 24 25 26 29 30 32 33 33 34 35 GDT PERCENT_AT 12.20 14.63 21.95 24.39 31.71 41.46 43.90 46.34 48.78 53.66 58.54 60.98 63.41 70.73 73.17 78.05 80.49 80.49 82.93 85.37 GDT RMS_LOCAL 0.32 0.52 1.01 1.17 1.68 2.16 2.23 2.41 2.63 3.41 3.60 3.79 3.93 4.50 4.65 5.25 5.28 5.28 5.48 5.69 GDT RMS_ALL_AT 9.26 14.50 9.37 9.42 9.18 7.93 8.03 7.98 8.04 7.45 7.53 7.49 7.46 7.40 7.42 7.49 7.55 7.55 7.51 7.42 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.933 0 0.623 0.592 15.438 0.000 0.000 15.438 LGA Q 2 Q 2 6.928 0 0.132 1.148 9.873 3.182 1.414 7.810 LGA E 3 E 3 2.600 0 0.132 1.555 3.967 26.818 26.465 3.967 LGA T 4 T 4 4.332 0 0.224 1.192 8.708 13.636 7.792 6.837 LGA R 5 R 5 1.765 0 0.318 0.971 6.531 45.000 22.975 6.282 LGA K 6 K 6 2.565 0 0.184 1.135 7.502 35.455 18.990 7.502 LGA K 7 K 7 2.229 0 0.394 1.092 3.642 44.545 36.364 2.568 LGA C 8 C 8 2.118 0 0.188 0.902 6.259 47.727 34.848 6.259 LGA T 9 T 9 1.560 0 0.196 1.131 4.762 66.364 50.909 1.643 LGA E 10 E 10 0.474 0 0.464 0.742 5.680 83.182 48.081 5.680 LGA M 11 M 11 1.005 0 0.445 1.193 3.369 82.273 56.364 2.138 LGA K 12 K 12 2.312 0 0.138 1.131 6.174 41.364 30.303 6.174 LGA K 13 K 13 2.630 0 0.182 0.940 4.525 35.455 22.020 3.670 LGA K 14 K 14 2.540 0 0.431 1.065 4.205 24.545 30.101 2.011 LGA F 15 F 15 2.057 0 0.498 0.629 3.420 47.727 32.397 3.420 LGA K 16 K 16 2.907 0 0.066 1.145 11.306 30.000 13.333 11.306 LGA N 17 N 17 6.361 0 0.163 0.374 9.971 1.364 2.045 6.490 LGA C 18 C 18 9.209 0 0.641 0.577 11.416 0.000 0.000 11.416 LGA E 19 E 19 8.146 0 0.544 1.493 13.442 0.000 0.000 12.532 LGA V 20 V 20 2.052 0 0.521 0.593 3.957 45.000 49.610 1.969 LGA R 21 R 21 1.723 0 0.508 1.326 5.158 49.545 27.273 2.573 LGA C 22 C 22 3.165 0 0.042 0.158 7.539 16.818 11.212 7.539 LGA D 23 D 23 5.526 0 0.351 1.597 6.388 2.727 1.364 5.262 LGA E 24 E 24 9.628 0 0.103 0.709 18.166 0.000 0.000 18.166 LGA S 25 S 25 12.138 0 0.107 0.681 15.978 0.000 0.000 15.978 LGA N 26 N 26 7.184 0 0.075 0.898 11.174 4.091 2.045 9.125 LGA H 27 H 27 1.859 0 0.375 1.122 6.241 28.182 20.182 4.859 LGA C 28 C 28 3.171 0 0.608 0.833 5.889 22.727 16.970 5.889 LGA V 29 V 29 6.622 0 0.590 0.766 10.620 0.000 0.000 9.638 LGA E 30 E 30 9.933 0 0.330 1.003 16.938 0.000 0.000 15.411 LGA V 31 V 31 10.438 0 0.608 0.560 13.523 0.000 0.000 13.121 LGA R 32 R 32 11.698 0 0.109 1.199 19.734 0.000 0.000 16.879 LGA C 33 C 33 10.682 0 0.463 1.120 13.494 0.000 0.000 7.199 LGA S 34 S 34 13.755 0 0.082 0.664 14.887 0.000 0.000 13.890 LGA D 35 D 35 11.199 0 0.149 1.166 11.882 0.000 0.000 11.451 LGA T 36 T 36 10.099 0 0.316 1.010 10.173 0.000 0.000 8.976 LGA K 37 K 37 8.212 0 0.348 1.103 10.748 0.000 0.000 7.733 LGA Y 38 Y 38 11.991 0 0.508 1.258 15.014 0.000 0.000 15.014 LGA T 39 T 39 13.822 0 0.587 1.012 16.375 0.000 0.000 13.335 LGA L 40 L 40 15.045 0 0.315 1.192 18.038 0.000 0.000 17.897 LGA C 41 C 41 16.570 0 0.414 1.020 17.186 0.000 0.000 15.302 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.314 7.239 8.077 19.457 13.733 6.696 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 19 2.41 40.854 38.035 0.757 LGA_LOCAL RMSD: 2.411 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.985 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.314 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.060018 * X + -0.174310 * Y + 0.982860 * Z + 0.072876 Y_new = 0.642413 * X + -0.760369 * Y + -0.095623 * Z + -1.043068 Z_new = 0.764005 * X + 0.625663 * Y + 0.157616 * Z + 1.590767 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.663952 -0.869497 1.324014 [DEG: 95.3375 -49.8185 75.8604 ] ZXZ: 1.473811 1.412521 0.884621 [DEG: 84.4432 80.9315 50.6851 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS110_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 19 2.41 38.035 7.31 REMARK ---------------------------------------------------------- MOLECULE T0955TS110_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 1.815 -5.321 -3.413 1.00 0.00 N ATOM 2 CA SER 1 2.470 -4.796 -2.209 1.00 0.00 C ATOM 3 C SER 1 1.543 -5.126 -1.047 1.00 0.00 C ATOM 4 O SER 1 2.001 -5.391 0.063 1.00 0.00 O ATOM 8 CB SER 1 2.729 -3.294 -2.352 1.00 0.00 C ATOM 10 OG SER 1 3.669 -3.034 -3.380 1.00 0.00 O ATOM 11 N GLN 2 0.240 -5.094 -1.304 1.00 0.00 N ATOM 12 CA GLN 2 -0.779 -5.473 -0.231 1.00 0.00 C ATOM 13 C GLN 2 -0.592 -6.848 0.395 1.00 0.00 C ATOM 14 O GLN 2 -1.109 -7.109 1.475 1.00 0.00 O ATOM 16 CB GLN 2 -2.201 -5.408 -0.794 1.00 0.00 C ATOM 17 CD GLN 2 -2.883 -7.760 -1.411 1.00 0.00 C ATOM 18 CG GLN 2 -2.467 -6.394 -1.920 1.00 0.00 C ATOM 19 OE1 GLN 2 -3.196 -7.925 -0.231 1.00 0.00 O ATOM 22 NE2 GLN 2 -2.889 -8.746 -2.301 1.00 0.00 N ATOM 23 N GLU 3 0.141 -7.727 -0.278 1.00 0.00 N ATOM 24 CA GLU 3 0.237 -9.188 0.193 1.00 0.00 C ATOM 25 C GLU 3 1.294 -9.002 1.276 1.00 0.00 C ATOM 26 O GLU 3 1.099 -9.557 2.344 1.00 0.00 O ATOM 28 CB GLU 3 0.608 -10.105 -0.974 1.00 0.00 C ATOM 29 CD GLU 3 -0.687 -12.132 -0.206 1.00 0.00 C ATOM 30 CG GLU 3 0.665 -11.579 -0.612 1.00 0.00 C ATOM 31 OE1 GLU 3 -1.713 -11.524 -0.578 1.00 0.00 O ATOM 32 OE2 GLU 3 -0.721 -13.173 0.483 1.00 0.00 O ATOM 33 N THR 4 2.130 -7.997 1.071 1.00 0.00 N ATOM 34 CA THR 4 3.529 -7.991 1.711 1.00 0.00 C ATOM 35 C THR 4 2.836 -7.301 2.871 1.00 0.00 C ATOM 36 O THR 4 3.337 -7.298 3.996 1.00 0.00 O ATOM 38 CB THR 4 4.553 -7.263 0.822 1.00 0.00 C ATOM 40 OG1 THR 4 4.658 -7.934 -0.440 1.00 0.00 O ATOM 41 CG2 THR 4 5.923 -7.255 1.483 1.00 0.00 C ATOM 42 N ARG 5 1.673 -6.725 2.566 1.00 0.00 N ATOM 43 CA ARG 5 0.493 -6.390 3.045 1.00 0.00 C ATOM 44 C ARG 5 1.336 -5.463 3.914 1.00 0.00 C ATOM 45 O ARG 5 1.100 -4.269 3.841 1.00 0.00 O ATOM 47 CB ARG 5 -0.232 -7.620 3.595 1.00 0.00 C ATOM 48 CD ARG 5 -0.882 -8.989 5.595 1.00 0.00 C ATOM 50 NE ARG 5 -0.746 -9.172 7.038 1.00 0.00 N ATOM 51 CG ARG 5 0.001 -7.866 5.077 1.00 0.00 C ATOM 52 CZ ARG 5 -1.681 -9.708 7.816 1.00 0.00 C ATOM 55 NH1 ARG 5 -1.468 -9.834 9.118 1.00 0.00 N ATOM 58 NH2 ARG 5 -2.827 -10.117 7.289 1.00 0.00 N ATOM 59 N LYS 6 2.446 -6.003 4.389 1.00 0.00 N ATOM 60 CA LYS 6 3.525 -5.139 4.896 1.00 0.00 C ATOM 61 C LYS 6 4.350 -4.232 3.989 1.00 0.00 C ATOM 62 O LYS 6 4.975 -3.278 4.451 1.00 0.00 O ATOM 64 CB LYS 6 4.581 -5.973 5.625 1.00 0.00 C ATOM 65 CD LYS 6 5.196 -7.387 7.605 1.00 0.00 C ATOM 66 CE LYS 6 4.723 -7.970 8.927 1.00 0.00 C ATOM 67 CG LYS 6 4.099 -6.576 6.935 1.00 0.00 C ATOM 71 NZ LYS 6 5.779 -8.788 9.584 1.00 0.00 N ATOM 72 N LYS 7 4.338 -4.525 2.693 1.00 0.00 N ATOM 73 CA LYS 7 5.304 -3.830 1.861 1.00 0.00 C ATOM 74 C LYS 7 4.129 -2.850 1.877 1.00 0.00 C ATOM 75 O LYS 7 4.182 -1.788 2.513 1.00 0.00 O ATOM 77 CB LYS 7 5.695 -4.693 0.659 1.00 0.00 C ATOM 78 CD LYS 7 7.231 -5.042 -1.294 1.00 0.00 C ATOM 79 CE LYS 7 6.196 -5.250 -2.388 1.00 0.00 C ATOM 80 CG LYS 7 6.737 -4.058 -0.247 1.00 0.00 C ATOM 84 NZ LYS 7 6.092 -4.067 -3.286 1.00 0.00 N ATOM 85 N CYS 8 3.056 -3.253 1.192 1.00 0.00 N ATOM 86 CA CYS 8 1.939 -2.522 0.592 1.00 0.00 C ATOM 87 C CYS 8 1.710 -1.937 1.982 1.00 0.00 C ATOM 88 O CYS 8 1.276 -0.789 2.101 1.00 0.00 O ATOM 90 CB CYS 8 0.944 -3.495 -0.045 1.00 0.00 C ATOM 91 SG CYS 8 1.567 -4.346 -1.513 1.00 0.00 S ATOM 92 N THR 9 2.019 -2.682 3.035 1.00 0.00 N ATOM 93 CA THR 9 1.534 -2.190 4.336 1.00 0.00 C ATOM 94 C THR 9 2.858 -1.645 4.860 1.00 0.00 C ATOM 95 O THR 9 2.904 -0.992 5.903 1.00 0.00 O ATOM 97 CB THR 9 0.887 -3.318 5.161 1.00 0.00 C ATOM 99 OG1 THR 9 1.859 -4.337 5.428 1.00 0.00 O ATOM 100 CG2 THR 9 -0.272 -3.940 4.396 1.00 0.00 C ATOM 101 N GLU 10 3.935 -1.904 4.126 1.00 0.00 N ATOM 102 CA GLU 10 5.290 -1.510 4.636 1.00 0.00 C ATOM 103 C GLU 10 5.503 -0.643 3.388 1.00 0.00 C ATOM 104 O GLU 10 6.536 -0.693 2.713 1.00 0.00 O ATOM 106 CB GLU 10 6.156 -2.749 4.872 1.00 0.00 C ATOM 107 CD GLU 10 8.321 -3.705 5.754 1.00 0.00 C ATOM 108 CG GLU 10 7.515 -2.449 5.482 1.00 0.00 C ATOM 109 OE1 GLU 10 7.779 -4.812 5.558 1.00 0.00 O ATOM 110 OE2 GLU 10 9.494 -3.580 6.165 1.00 0.00 O ATOM 111 N MET 11 4.448 0.136 3.133 1.00 0.00 N ATOM 112 CA MET 11 5.118 0.935 1.751 1.00 0.00 C ATOM 113 C MET 11 3.869 1.619 2.294 1.00 0.00 C ATOM 114 O MET 11 3.966 2.797 2.590 1.00 0.00 O ATOM 116 CB MET 11 5.197 -0.026 0.562 1.00 0.00 C ATOM 117 SD MET 11 6.184 -2.322 -0.633 1.00 0.00 S ATOM 118 CE MET 11 6.938 -1.324 -1.915 1.00 0.00 C ATOM 119 CG MET 11 6.188 -1.163 0.748 1.00 0.00 C ATOM 120 N LYS 12 2.919 0.795 2.708 1.00 0.00 N ATOM 121 CA LYS 12 1.757 1.277 3.376 1.00 0.00 C ATOM 122 C LYS 12 2.336 1.809 4.682 1.00 0.00 C ATOM 123 O LYS 12 2.049 2.945 5.064 1.00 0.00 O ATOM 125 CB LYS 12 0.730 0.155 3.540 1.00 0.00 C ATOM 126 CD LYS 12 -1.595 -0.534 4.185 1.00 0.00 C ATOM 127 CE LYS 12 -2.014 -0.965 2.789 1.00 0.00 C ATOM 128 CG LYS 12 -0.593 0.608 4.133 1.00 0.00 C ATOM 132 NZ LYS 12 -2.887 0.049 2.134 1.00 0.00 N ATOM 133 N LYS 13 3.170 1.031 5.361 1.00 0.00 N ATOM 134 CA LYS 13 3.417 1.449 6.908 1.00 0.00 C ATOM 135 C LYS 13 4.734 2.068 6.460 1.00 0.00 C ATOM 136 O LYS 13 5.233 2.981 7.132 1.00 0.00 O ATOM 138 CB LYS 13 3.389 0.212 7.808 1.00 0.00 C ATOM 139 CD LYS 13 3.395 -0.739 10.130 1.00 0.00 C ATOM 140 CE LYS 13 3.557 -0.434 11.611 1.00 0.00 C ATOM 141 CG LYS 13 3.541 0.518 9.289 1.00 0.00 C ATOM 145 NZ LYS 13 3.420 -1.658 12.448 1.00 0.00 N ATOM 146 N LYS 14 5.300 1.691 5.332 1.00 0.00 N ATOM 147 CA LYS 14 6.601 2.163 4.879 1.00 0.00 C ATOM 148 C LYS 14 6.190 2.954 3.661 1.00 0.00 C ATOM 149 O LYS 14 6.784 2.751 2.595 1.00 0.00 O ATOM 151 CB LYS 14 7.538 0.981 4.618 1.00 0.00 C ATOM 152 CD LYS 14 9.842 0.169 4.043 1.00 0.00 C ATOM 153 CE LYS 14 11.247 0.571 3.627 1.00 0.00 C ATOM 154 CG LYS 14 8.947 1.385 4.214 1.00 0.00 C ATOM 158 NZ LYS 14 12.135 -0.611 3.454 1.00 0.00 N ATOM 159 N PHE 15 5.155 3.726 3.753 1.00 0.00 N ATOM 160 CA PHE 15 4.769 4.601 2.526 1.00 0.00 C ATOM 161 C PHE 15 3.644 5.455 3.093 1.00 0.00 C ATOM 162 O PHE 15 3.708 6.684 3.034 1.00 0.00 O ATOM 164 CB PHE 15 4.372 3.718 1.342 1.00 0.00 C ATOM 165 CG PHE 15 5.510 2.919 0.774 1.00 0.00 C ATOM 166 CZ PHE 15 7.618 1.445 -0.280 1.00 0.00 C ATOM 167 CD1 PHE 15 5.724 1.611 1.174 1.00 0.00 C ATOM 168 CE1 PHE 15 6.771 0.876 0.652 1.00 0.00 C ATOM 169 CD2 PHE 15 6.367 3.474 -0.160 1.00 0.00 C ATOM 170 CE2 PHE 15 7.414 2.738 -0.682 1.00 0.00 C ATOM 171 N LYS 16 2.618 4.811 3.638 1.00 0.00 N ATOM 172 CA LYS 16 1.538 5.533 4.076 1.00 0.00 C ATOM 173 C LYS 16 1.601 5.856 5.560 1.00 0.00 C ATOM 174 O LYS 16 0.805 6.666 6.048 1.00 0.00 O ATOM 176 CB LYS 16 0.237 4.783 3.782 1.00 0.00 C ATOM 177 CD LYS 16 -0.528 5.568 1.525 1.00 0.00 C ATOM 178 CE LYS 16 0.535 6.606 1.208 1.00 0.00 C ATOM 179 CG LYS 16 0.052 4.409 2.321 1.00 0.00 C ATOM 183 NZ LYS 16 0.057 7.604 0.212 1.00 0.00 N ATOM 184 N ASN 17 2.534 5.184 6.240 1.00 0.00 N ATOM 185 CA ASN 17 2.469 5.184 7.789 1.00 0.00 C ATOM 186 C ASN 17 1.522 4.269 8.554 1.00 0.00 C ATOM 187 O ASN 17 1.988 3.471 9.379 1.00 0.00 O ATOM 189 CB ASN 17 2.155 6.586 8.313 1.00 0.00 C ATOM 190 CG ASN 17 3.238 7.590 7.975 1.00 0.00 C ATOM 191 OD1 ASN 17 4.429 7.286 8.058 1.00 0.00 O ATOM 194 ND2 ASN 17 2.830 8.795 7.593 1.00 0.00 N ATOM 195 N CYS 18 0.232 4.275 8.293 1.00 0.00 N ATOM 196 CA CYS 18 -0.722 3.573 9.087 1.00 0.00 C ATOM 197 C CYS 18 -0.981 2.296 8.292 1.00 0.00 C ATOM 198 O CYS 18 -1.666 1.386 8.764 1.00 0.00 O ATOM 200 CB CYS 18 -1.969 4.430 9.310 1.00 0.00 C ATOM 201 SG CYS 18 -1.672 5.957 10.232 1.00 0.00 S ATOM 202 N GLU 19 -0.454 2.233 7.070 1.00 0.00 N ATOM 203 CA GLU 19 -0.628 1.045 6.234 1.00 0.00 C ATOM 204 C GLU 19 -0.754 1.589 4.814 1.00 0.00 C ATOM 205 O GLU 19 0.184 1.503 4.019 1.00 0.00 O ATOM 207 CB GLU 19 -1.849 0.243 6.691 1.00 0.00 C ATOM 208 CD GLU 19 -1.999 0.613 9.185 1.00 0.00 C ATOM 209 CG GLU 19 -1.705 -0.374 8.072 1.00 0.00 C ATOM 210 OE1 GLU 19 -1.850 1.831 8.953 1.00 0.00 O ATOM 211 OE2 GLU 19 -2.380 0.168 10.288 1.00 0.00 O ATOM 212 N VAL 20 -1.925 2.130 4.480 1.00 0.00 N ATOM 213 CA VAL 20 -2.114 2.734 3.139 1.00 0.00 C ATOM 214 C VAL 20 -3.565 2.354 2.853 1.00 0.00 C ATOM 215 O VAL 20 -4.468 3.183 2.971 1.00 0.00 O ATOM 217 CB VAL 20 -1.083 2.197 2.129 1.00 0.00 C ATOM 218 CG1 VAL 20 -1.370 2.739 0.737 1.00 0.00 C ATOM 219 CG2 VAL 20 0.329 2.557 2.566 1.00 0.00 C ATOM 220 N ARG 21 -3.788 1.104 2.450 1.00 0.00 N ATOM 221 CA ARG 21 -5.113 0.713 2.306 1.00 0.00 C ATOM 222 C ARG 21 -4.943 -0.231 1.125 1.00 0.00 C ATOM 223 O ARG 21 -5.013 -1.449 1.290 1.00 0.00 O ATOM 225 CB ARG 21 -6.009 1.932 2.081 1.00 0.00 C ATOM 226 CD ARG 21 -8.321 2.858 1.767 1.00 0.00 C ATOM 228 NE ARG 21 -8.005 3.536 0.512 1.00 0.00 N ATOM 229 CG ARG 21 -7.488 1.602 1.961 1.00 0.00 C ATOM 230 CZ ARG 21 -8.498 3.186 -0.671 1.00 0.00 C ATOM 233 NH1 ARG 21 -8.153 3.861 -1.759 1.00 0.00 N ATOM 236 NH2 ARG 21 -9.336 2.162 -0.764 1.00 0.00 N ATOM 237 N CYS 22 -4.711 0.315 -0.061 1.00 0.00 N ATOM 238 CA CYS 22 -4.498 -0.518 -1.245 1.00 0.00 C ATOM 239 C CYS 22 -3.032 -0.762 -1.504 1.00 0.00 C ATOM 240 O CYS 22 -2.245 0.176 -1.342 1.00 0.00 O ATOM 242 CB CYS 22 -5.139 0.128 -2.476 1.00 0.00 C ATOM 243 SG CYS 22 -6.937 0.283 -2.387 1.00 0.00 S ATOM 244 N ASP 23 -2.714 -1.979 -1.918 1.00 0.00 N ATOM 245 CA ASP 23 -1.253 -2.417 -2.142 1.00 0.00 C ATOM 246 C ASP 23 -1.169 -2.838 -3.609 1.00 0.00 C ATOM 247 O ASP 23 -1.415 -3.992 -3.955 1.00 0.00 O ATOM 249 CB ASP 23 -0.876 -3.541 -1.176 1.00 0.00 C ATOM 250 CG ASP 23 -1.745 -4.771 -1.346 1.00 0.00 C ATOM 251 OD1 ASP 23 -2.919 -4.620 -1.745 1.00 0.00 O ATOM 252 OD2 ASP 23 -1.252 -5.888 -1.082 1.00 0.00 O ATOM 253 N GLU 24 -0.806 -1.889 -4.468 1.00 0.00 N ATOM 254 CA GLU 24 -0.652 -2.176 -5.900 1.00 0.00 C ATOM 255 C GLU 24 0.459 -3.131 -6.314 1.00 0.00 C ATOM 256 O GLU 24 0.490 -3.584 -7.452 1.00 0.00 O ATOM 258 CB GLU 24 -0.425 -0.882 -6.684 1.00 0.00 C ATOM 259 CD GLU 24 -0.201 0.236 -8.937 1.00 0.00 C ATOM 260 CG GLU 24 -0.334 -1.076 -8.189 1.00 0.00 C ATOM 261 OE1 GLU 24 -0.148 1.295 -8.277 1.00 0.00 O ATOM 262 OE2 GLU 24 -0.150 0.205 -10.185 1.00 0.00 O ATOM 263 N SER 25 1.368 -3.439 -5.397 1.00 0.00 N ATOM 264 CA SER 25 2.506 -4.193 -5.778 1.00 0.00 C ATOM 265 C SER 25 1.941 -5.592 -5.614 1.00 0.00 C ATOM 266 O SER 25 2.200 -6.481 -6.443 1.00 0.00 O ATOM 268 CB SER 25 3.702 -3.843 -4.890 1.00 0.00 C ATOM 270 OG SER 25 4.844 -4.601 -5.252 1.00 0.00 O ATOM 271 N ASN 26 1.188 -5.872 -4.568 1.00 0.00 N ATOM 272 CA ASN 26 0.590 -7.200 -4.340 1.00 0.00 C ATOM 273 C ASN 26 -0.832 -7.437 -4.841 1.00 0.00 C ATOM 274 O ASN 26 -1.330 -8.565 -4.818 1.00 0.00 O ATOM 276 CB ASN 26 0.597 -7.542 -2.848 1.00 0.00 C ATOM 277 CG ASN 26 1.994 -7.787 -2.314 1.00 0.00 C ATOM 278 OD1 ASN 26 2.431 -7.132 -1.367 1.00 0.00 O ATOM 281 ND2 ASN 26 2.702 -8.734 -2.921 1.00 0.00 N ATOM 282 N HIS 27 -1.503 -6.369 -5.273 1.00 0.00 N ATOM 283 CA HIS 27 -2.807 -6.777 -6.135 1.00 0.00 C ATOM 284 C HIS 27 -3.636 -5.678 -5.475 1.00 0.00 C ATOM 285 O HIS 27 -4.477 -5.048 -6.120 1.00 0.00 O ATOM 287 CB HIS 27 -3.170 -8.243 -5.896 1.00 0.00 C ATOM 288 CG HIS 27 -4.307 -8.729 -6.739 1.00 0.00 C ATOM 289 ND1 HIS 27 -4.187 -8.955 -8.094 1.00 0.00 N ATOM 290 CE1 HIS 27 -5.369 -9.383 -8.573 1.00 0.00 C ATOM 291 CD2 HIS 27 -5.700 -9.081 -6.502 1.00 0.00 C ATOM 293 NE2 HIS 27 -6.281 -9.461 -7.623 1.00 0.00 N ATOM 294 N CYS 28 -3.421 -5.461 -4.178 1.00 0.00 N ATOM 295 CA CYS 28 -4.080 -4.249 -3.596 1.00 0.00 C ATOM 296 C CYS 28 -4.774 -4.759 -2.326 1.00 0.00 C ATOM 297 O CYS 28 -5.157 -3.967 -1.458 1.00 0.00 O ATOM 299 CB CYS 28 -5.043 -3.624 -4.608 1.00 0.00 C ATOM 300 SG CYS 28 -6.457 -4.666 -5.036 1.00 0.00 S ATOM 301 N VAL 29 -4.936 -6.077 -2.219 1.00 0.00 N ATOM 302 CA VAL 29 -5.460 -6.574 -0.856 1.00 0.00 C ATOM 303 C VAL 29 -5.154 -6.464 0.628 1.00 0.00 C ATOM 304 O VAL 29 -5.762 -7.165 1.421 1.00 0.00 O ATOM 306 CB VAL 29 -5.502 -8.112 -0.793 1.00 0.00 C ATOM 307 CG1 VAL 29 -5.874 -8.578 0.606 1.00 0.00 C ATOM 308 CG2 VAL 29 -6.480 -8.660 -1.820 1.00 0.00 C ATOM 309 N GLU 30 -4.221 -5.585 1.027 1.00 0.00 N ATOM 310 CA GLU 30 -3.854 -5.583 2.445 1.00 0.00 C ATOM 311 C GLU 30 -3.174 -4.304 2.934 1.00 0.00 C ATOM 312 O GLU 30 -1.962 -4.275 3.117 1.00 0.00 O ATOM 314 CB GLU 30 -2.929 -6.759 2.761 1.00 0.00 C ATOM 315 CD GLU 30 -3.703 -7.155 5.132 1.00 0.00 C ATOM 316 CG GLU 30 -2.527 -6.858 4.224 1.00 0.00 C ATOM 317 OE1 GLU 30 -4.308 -8.239 4.987 1.00 0.00 O ATOM 318 OE2 GLU 30 -4.022 -6.304 5.990 1.00 0.00 O ATOM 319 N VAL 31 -3.944 -3.237 3.105 1.00 0.00 N ATOM 320 CA VAL 31 -4.462 -2.364 4.307 1.00 0.00 C ATOM 321 C VAL 31 -3.308 -3.136 3.687 1.00 0.00 C ATOM 322 O VAL 31 -2.881 -4.158 4.220 1.00 0.00 O ATOM 324 CB VAL 31 -5.704 -2.991 4.966 1.00 0.00 C ATOM 325 CG1 VAL 31 -6.180 -2.135 6.130 1.00 0.00 C ATOM 326 CG2 VAL 31 -6.817 -3.172 3.944 1.00 0.00 C ATOM 327 N ARG 32 -2.816 -2.652 2.553 1.00 0.00 N ATOM 328 CA ARG 32 -1.707 -2.631 1.811 1.00 0.00 C ATOM 329 C ARG 32 -1.318 -1.562 0.816 1.00 0.00 C ATOM 330 O ARG 32 -1.641 -1.665 -0.361 1.00 0.00 O ATOM 332 CB ARG 32 -1.612 -3.895 0.954 1.00 0.00 C ATOM 333 CD ARG 32 -1.346 -6.388 0.842 1.00 0.00 C ATOM 335 NE ARG 32 -1.230 -7.634 1.597 1.00 0.00 N ATOM 336 CG ARG 32 -1.477 -5.180 1.755 1.00 0.00 C ATOM 337 CZ ARG 32 -1.086 -8.832 1.041 1.00 0.00 C ATOM 340 NH1 ARG 32 -0.987 -9.911 1.807 1.00 0.00 N ATOM 343 NH2 ARG 32 -1.042 -8.952 -0.279 1.00 0.00 N ATOM 344 N CYS 33 -0.655 -0.494 1.294 1.00 0.00 N ATOM 345 CA CYS 33 -0.170 0.449 0.123 1.00 0.00 C ATOM 346 C CYS 33 0.657 0.209 -1.140 1.00 0.00 C ATOM 347 O CYS 33 1.760 -0.355 -1.117 1.00 0.00 O ATOM 349 CB CYS 33 0.655 1.611 0.679 1.00 0.00 C ATOM 350 SG CYS 33 1.262 2.763 -0.576 1.00 0.00 S ATOM 351 N SER 34 0.080 0.551 -2.284 1.00 0.00 N ATOM 352 CA SER 34 0.826 0.582 -3.493 1.00 0.00 C ATOM 353 C SER 34 1.867 1.679 -3.694 1.00 0.00 C ATOM 354 O SER 34 3.033 1.378 -3.508 1.00 0.00 O ATOM 356 CB SER 34 -0.110 0.677 -4.699 1.00 0.00 C ATOM 358 OG SER 34 -0.820 1.903 -4.698 1.00 0.00 O ATOM 359 N ASP 35 1.382 2.910 -3.709 1.00 0.00 N ATOM 360 CA ASP 35 2.195 4.060 -4.066 1.00 0.00 C ATOM 361 C ASP 35 2.631 4.302 -2.623 1.00 0.00 C ATOM 362 O ASP 35 3.589 5.035 -2.368 1.00 0.00 O ATOM 364 CB ASP 35 1.345 5.119 -4.771 1.00 0.00 C ATOM 365 CG ASP 35 0.833 4.653 -6.119 1.00 0.00 C ATOM 366 OD1 ASP 35 1.453 3.743 -6.708 1.00 0.00 O ATOM 367 OD2 ASP 35 -0.190 5.197 -6.586 1.00 0.00 O ATOM 368 N THR 36 1.912 3.709 -1.672 1.00 0.00 N ATOM 369 CA THR 36 2.622 3.722 -0.301 1.00 0.00 C ATOM 370 C THR 36 1.503 4.705 0.029 1.00 0.00 C ATOM 371 O THR 36 1.706 5.810 0.568 1.00 0.00 O ATOM 373 CB THR 36 4.097 4.146 -0.433 1.00 0.00 C ATOM 375 OG1 THR 36 4.169 5.474 -0.966 1.00 0.00 O ATOM 376 CG2 THR 36 4.839 3.205 -1.370 1.00 0.00 C ATOM 377 N LYS 37 0.315 4.305 -0.415 1.00 0.00 N ATOM 378 CA LYS 37 -0.874 5.051 0.652 1.00 0.00 C ATOM 379 C LYS 37 -2.211 4.862 1.345 1.00 0.00 C ATOM 380 O LYS 37 -3.090 4.149 0.852 1.00 0.00 O ATOM 382 CB LYS 37 -1.357 6.381 0.071 1.00 0.00 C ATOM 383 CD LYS 37 -2.518 7.606 -1.788 1.00 0.00 C ATOM 384 CE LYS 37 -3.329 7.468 -3.066 1.00 0.00 C ATOM 385 CG LYS 37 -2.111 6.246 -1.243 1.00 0.00 C ATOM 389 NZ LYS 37 -3.733 8.792 -3.613 1.00 0.00 N ATOM 390 N TYR 38 -2.354 5.571 2.463 1.00 0.00 N ATOM 391 CA TYR 38 -3.551 6.113 3.222 1.00 0.00 C ATOM 392 C TYR 38 -4.832 5.357 3.589 1.00 0.00 C ATOM 393 O TYR 38 -5.936 5.806 3.293 1.00 0.00 O ATOM 395 CB TYR 38 -4.130 7.336 2.508 1.00 0.00 C ATOM 396 CG TYR 38 -5.053 8.169 3.369 1.00 0.00 C ATOM 398 OH TYR 38 -7.579 10.462 5.746 1.00 0.00 O ATOM 399 CZ TYR 38 -6.744 9.702 4.958 1.00 0.00 C ATOM 400 CD1 TYR 38 -4.561 8.886 4.451 1.00 0.00 C ATOM 401 CE1 TYR 38 -5.397 9.650 5.243 1.00 0.00 C ATOM 402 CD2 TYR 38 -6.414 8.233 3.097 1.00 0.00 C ATOM 403 CE2 TYR 38 -7.265 8.991 3.878 1.00 0.00 C ATOM 404 N THR 39 -4.644 4.263 4.331 1.00 0.00 N ATOM 405 CA THR 39 -5.913 3.507 4.746 1.00 0.00 C ATOM 406 C THR 39 -4.872 2.928 5.679 1.00 0.00 C ATOM 407 O THR 39 -4.049 3.718 6.100 1.00 0.00 O ATOM 409 CB THR 39 -6.533 2.748 3.558 1.00 0.00 C ATOM 411 OG1 THR 39 -7.820 2.241 3.930 1.00 0.00 O ATOM 412 CG2 THR 39 -5.648 1.579 3.153 1.00 0.00 C ATOM 413 N LEU 40 -4.955 1.657 6.076 1.00 0.00 N ATOM 414 CA LEU 40 -4.191 0.732 6.727 1.00 0.00 C ATOM 415 C LEU 40 -4.048 -0.358 7.130 1.00 0.00 C ATOM 416 O LEU 40 -5.045 -0.989 6.778 1.00 0.00 O ATOM 418 CB LEU 40 -3.848 1.218 8.138 1.00 0.00 C ATOM 419 CG LEU 40 -5.033 1.542 9.050 1.00 0.00 C ATOM 420 CD1 LEU 40 -5.598 0.273 9.668 1.00 0.00 C ATOM 421 CD2 LEU 40 -4.622 2.524 10.136 1.00 0.00 C ATOM 422 N CYS 41 -2.986 -0.946 7.683 1.00 0.00 N ATOM 423 CA CYS 41 -2.859 -2.496 8.147 1.00 0.00 C ATOM 424 C CYS 41 -1.769 -2.863 8.024 1.00 0.00 C ATOM 425 O CYS 41 -1.914 -2.602 9.220 1.00 0.00 O ATOM 427 OXT CYS 41 -2.279 -2.904 6.902 1.00 0.00 O ATOM 428 CB CYS 41 -3.817 -3.377 7.343 1.00 0.00 C ATOM 429 SG CYS 41 -3.458 -3.448 5.572 1.00 0.00 S TER END