####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS110_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 4 - 32 4.79 8.61 LONGEST_CONTINUOUS_SEGMENT: 29 5 - 33 4.98 8.57 LCS_AVERAGE: 61.51 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 6 - 16 1.24 14.00 LCS_AVERAGE: 18.02 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 6 - 15 0.91 14.06 LCS_AVERAGE: 13.80 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 20 3 3 3 4 4 4 5 8 14 18 22 25 27 29 31 31 32 32 33 33 LCS_GDT Q 2 Q 2 4 5 20 4 4 5 6 8 11 13 16 17 19 23 25 27 29 31 31 32 32 33 33 LCS_GDT E 3 E 3 4 5 20 4 4 5 6 7 9 10 16 16 16 20 24 25 27 30 30 32 32 33 33 LCS_GDT T 4 T 4 4 5 29 4 4 5 6 7 10 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT R 5 R 5 4 5 29 4 4 5 7 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT K 6 K 6 10 11 29 5 7 10 10 11 11 11 13 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT K 7 K 7 10 11 29 5 7 10 10 11 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT C 8 C 8 10 11 29 5 8 10 10 11 11 12 15 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT T 9 T 9 10 11 29 7 8 10 10 11 11 11 12 14 17 21 25 27 28 31 31 32 32 33 34 LCS_GDT E 10 E 10 10 11 29 7 8 10 10 11 11 11 12 16 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT M 11 M 11 10 11 29 7 8 10 10 11 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT K 12 K 12 10 11 29 7 8 10 10 11 11 11 12 14 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT K 13 K 13 10 11 29 7 8 10 10 11 11 11 12 14 14 17 19 23 28 31 31 32 32 33 34 LCS_GDT K 14 K 14 10 11 29 7 8 10 10 11 11 11 12 14 18 21 24 27 29 31 31 32 32 33 34 LCS_GDT F 15 F 15 10 11 29 7 8 10 10 11 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT K 16 K 16 8 11 29 4 6 8 9 11 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT N 17 N 17 3 5 29 3 3 3 4 7 8 8 10 14 18 22 25 27 29 31 31 32 32 33 34 LCS_GDT C 18 C 18 5 6 29 1 3 5 6 7 8 10 13 17 20 22 25 27 29 31 31 32 32 33 34 LCS_GDT E 19 E 19 5 6 29 1 4 5 6 7 8 11 12 17 20 22 25 27 29 31 31 32 32 33 34 LCS_GDT V 20 V 20 5 6 29 3 4 5 6 6 9 12 15 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT R 21 R 21 5 6 29 3 4 5 6 6 10 12 15 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT C 22 C 22 5 6 29 3 4 5 6 6 10 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT D 23 D 23 4 8 29 3 3 6 6 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT E 24 E 24 5 8 29 3 3 6 6 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT S 25 S 25 5 8 29 4 4 6 6 8 11 13 15 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT N 26 N 26 5 8 29 4 4 5 6 8 9 12 15 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT H 27 H 27 5 8 29 4 4 6 7 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT C 28 C 28 5 8 29 4 4 5 6 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT V 29 V 29 3 8 29 3 3 4 7 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT E 30 E 30 3 8 29 3 4 6 7 8 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT V 31 V 31 3 6 29 3 3 4 5 6 8 12 16 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT R 32 R 32 4 6 29 3 4 4 5 6 6 9 13 17 20 23 25 27 29 31 31 32 32 33 34 LCS_GDT C 33 C 33 4 6 29 3 4 4 5 6 7 8 9 11 14 16 18 19 22 25 28 30 32 33 34 LCS_GDT S 34 S 34 4 6 13 3 4 4 5 6 6 7 9 11 14 16 16 19 21 23 24 27 30 32 34 LCS_GDT D 35 D 35 4 6 13 3 4 4 5 6 6 6 8 11 11 16 18 19 21 23 26 28 30 33 34 LCS_GDT T 36 T 36 4 5 13 3 3 4 5 7 8 8 10 11 14 16 18 19 21 23 25 28 30 33 34 LCS_GDT K 37 K 37 4 5 13 3 3 4 4 7 8 8 10 11 14 16 18 19 21 24 26 28 30 33 34 LCS_GDT Y 38 Y 38 4 5 13 3 3 4 4 6 7 8 10 11 14 16 18 18 19 23 24 27 30 33 34 LCS_GDT T 39 T 39 4 5 13 3 3 4 4 6 7 8 9 11 14 16 16 18 19 23 24 26 26 27 31 LCS_GDT L 40 L 40 4 5 13 3 3 4 4 6 7 8 9 14 14 16 17 18 20 25 27 28 29 30 31 LCS_GDT C 41 C 41 3 3 13 0 3 3 3 3 3 3 5 10 10 12 16 18 20 23 24 28 29 29 30 LCS_AVERAGE LCS_A: 31.11 ( 13.80 18.02 61.51 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 10 10 11 11 13 16 17 20 23 25 27 29 31 31 32 32 33 34 GDT PERCENT_AT 17.07 19.51 24.39 24.39 26.83 26.83 31.71 39.02 41.46 48.78 56.10 60.98 65.85 70.73 75.61 75.61 78.05 78.05 80.49 82.93 GDT RMS_LOCAL 0.26 0.66 0.91 0.91 1.24 1.24 2.35 2.92 3.12 3.61 3.87 4.08 4.48 4.72 5.01 5.01 5.17 5.17 5.43 6.55 GDT RMS_ALL_AT 14.74 14.42 14.06 14.06 14.00 14.00 10.49 9.75 9.45 9.03 9.45 9.35 8.57 8.72 8.76 8.76 8.82 8.82 8.68 8.22 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 5.420 0 0.190 0.610 6.636 0.455 0.303 5.635 LGA Q 2 Q 2 2.229 0 0.587 1.456 8.505 41.818 22.222 6.232 LGA E 3 E 3 3.980 0 0.099 1.388 8.478 16.818 7.475 7.323 LGA T 4 T 4 2.878 0 0.208 1.036 6.253 30.455 17.662 5.170 LGA R 5 R 5 3.095 0 0.468 1.187 5.581 14.545 16.364 4.769 LGA K 6 K 6 7.439 0 0.044 0.883 13.384 0.000 0.000 13.384 LGA K 7 K 7 2.075 0 0.306 0.886 7.194 24.091 16.162 7.194 LGA C 8 C 8 7.067 0 0.768 1.250 12.131 0.000 0.000 12.131 LGA T 9 T 9 9.613 0 0.393 0.420 13.874 0.000 0.000 12.862 LGA E 10 E 10 5.756 0 0.075 1.121 6.666 1.818 8.081 2.326 LGA M 11 M 11 1.791 0 0.130 1.073 3.062 41.818 33.409 2.604 LGA K 12 K 12 5.440 0 0.071 0.940 14.785 1.364 0.606 14.785 LGA K 13 K 13 8.100 0 0.032 1.210 13.664 0.000 0.000 13.664 LGA K 14 K 14 6.598 0 0.063 1.081 7.860 0.000 0.000 6.390 LGA F 15 F 15 2.915 0 0.496 1.529 6.216 25.909 17.355 6.216 LGA K 16 K 16 3.184 0 0.174 1.354 12.035 13.182 5.859 12.035 LGA N 17 N 17 8.543 0 0.566 0.901 14.627 0.000 0.000 14.627 LGA C 18 C 18 10.932 0 0.287 0.917 15.478 0.000 0.000 15.478 LGA E 19 E 19 11.706 0 0.383 0.836 18.455 0.000 0.000 18.455 LGA V 20 V 20 6.457 0 0.216 0.271 7.749 0.000 1.039 4.026 LGA R 21 R 21 5.942 0 0.331 1.513 16.111 12.273 4.463 16.111 LGA C 22 C 22 3.734 0 0.597 0.801 7.286 15.000 10.000 7.286 LGA D 23 D 23 3.134 0 0.346 1.342 5.852 39.545 20.909 4.275 LGA E 24 E 24 2.795 0 0.388 1.139 4.909 25.000 17.778 4.909 LGA S 25 S 25 5.112 0 0.295 0.461 6.639 1.364 0.909 5.127 LGA N 26 N 26 6.027 0 0.166 0.853 6.746 0.000 0.000 6.441 LGA H 27 H 27 3.250 0 0.243 0.422 7.424 17.273 6.909 7.424 LGA C 28 C 28 1.427 0 0.296 0.258 3.821 53.636 42.121 3.821 LGA V 29 V 29 2.758 0 0.266 0.343 6.379 48.636 28.052 5.833 LGA E 30 E 30 1.441 0 0.642 0.661 3.170 50.000 45.455 2.530 LGA V 31 V 31 4.238 0 0.429 1.033 7.203 14.091 8.831 7.203 LGA R 32 R 32 7.770 0 0.466 1.360 9.990 0.000 5.124 2.621 LGA C 33 C 33 13.380 0 0.490 0.981 15.472 0.000 0.000 14.107 LGA S 34 S 34 19.767 0 0.562 0.835 22.722 0.000 0.000 22.722 LGA D 35 D 35 23.121 0 0.183 1.024 26.158 0.000 0.000 25.851 LGA T 36 T 36 24.270 0 0.627 0.644 26.598 0.000 0.000 26.598 LGA K 37 K 37 20.089 0 0.389 1.502 24.907 0.000 0.000 24.907 LGA Y 38 Y 38 16.253 0 0.197 0.226 17.504 0.000 0.000 16.359 LGA T 39 T 39 15.403 0 0.160 0.150 18.513 0.000 0.000 18.513 LGA L 40 L 40 10.994 0 0.513 1.055 11.978 0.000 0.000 10.402 LGA C 41 C 41 10.615 0 0.622 0.979 12.029 0.000 0.000 12.029 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.880 7.769 9.056 11.929 8.222 3.548 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 16 2.92 39.634 34.277 0.529 LGA_LOCAL RMSD: 2.922 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.749 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.880 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.165854 * X + 0.984260 * Y + -0.061033 * Z + -0.876866 Y_new = -0.888909 * X + -0.176012 * Y + -0.422920 * Z + -3.021495 Z_new = -0.427005 * X + -0.015890 * Y + 0.904110 * Z + 1.425479 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.755257 0.441178 -0.017574 [DEG: -100.5688 25.2777 -1.0069 ] ZXZ: -0.143324 0.441505 -1.607993 [DEG: -8.2119 25.2964 -92.1312 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS110_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS110_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 16 2.92 34.277 7.88 REMARK ---------------------------------------------------------- MOLECULE T0955TS110_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -1.414 -9.541 -2.895 1.00 0.00 N ATOM 2 CA SER 1 -2.085 -10.342 -1.886 1.00 0.00 C ATOM 3 C SER 1 -1.895 -10.013 -0.413 1.00 0.00 C ATOM 4 O SER 1 -1.267 -9.018 -0.053 1.00 0.00 O ATOM 8 CB SER 1 -1.693 -11.815 -2.024 1.00 0.00 C ATOM 10 OG SER 1 -0.332 -12.014 -1.688 1.00 0.00 O ATOM 11 N GLN 2 -2.438 -10.868 0.440 1.00 0.00 N ATOM 12 CA GLN 2 -2.531 -10.739 1.816 1.00 0.00 C ATOM 13 C GLN 2 -1.084 -10.854 2.308 1.00 0.00 C ATOM 14 O GLN 2 -0.403 -11.852 2.051 1.00 0.00 O ATOM 16 CB GLN 2 -3.461 -11.808 2.393 1.00 0.00 C ATOM 17 CD GLN 2 -5.248 -12.240 0.661 1.00 0.00 C ATOM 18 CG GLN 2 -4.922 -11.632 2.011 1.00 0.00 C ATOM 19 OE1 GLN 2 -4.351 -12.600 -0.102 1.00 0.00 O ATOM 22 NE2 GLN 2 -6.537 -12.355 0.361 1.00 0.00 N ATOM 23 N GLU 3 -0.631 -9.819 3.013 1.00 0.00 N ATOM 24 CA GLU 3 0.673 -9.831 3.617 1.00 0.00 C ATOM 25 C GLU 3 1.567 -9.046 2.668 1.00 0.00 C ATOM 26 O GLU 3 2.335 -8.196 3.105 1.00 0.00 O ATOM 28 CB GLU 3 1.149 -11.269 3.838 1.00 0.00 C ATOM 29 CD GLU 3 0.822 -13.466 5.040 1.00 0.00 C ATOM 30 CG GLU 3 0.342 -12.038 4.871 1.00 0.00 C ATOM 31 OE1 GLU 3 1.736 -13.876 4.295 1.00 0.00 O ATOM 32 OE2 GLU 3 0.283 -14.174 5.916 1.00 0.00 O ATOM 33 N THR 4 1.474 -9.328 1.373 1.00 0.00 N ATOM 34 CA THR 4 2.516 -8.693 0.288 1.00 0.00 C ATOM 35 C THR 4 1.880 -7.510 -0.418 1.00 0.00 C ATOM 36 O THR 4 2.537 -6.802 -1.183 1.00 0.00 O ATOM 38 CB THR 4 2.963 -9.742 -0.747 1.00 0.00 C ATOM 40 OG1 THR 4 1.824 -10.213 -1.476 1.00 0.00 O ATOM 41 CG2 THR 4 3.621 -10.926 -0.054 1.00 0.00 C ATOM 42 N ARG 5 0.593 -7.314 -0.135 1.00 0.00 N ATOM 43 CA ARG 5 -0.392 -6.310 -0.165 1.00 0.00 C ATOM 44 C ARG 5 0.573 -5.764 -1.193 1.00 0.00 C ATOM 45 O ARG 5 0.872 -4.576 -1.224 1.00 0.00 O ATOM 47 CB ARG 5 -0.585 -5.705 1.227 1.00 0.00 C ATOM 48 CD ARG 5 -2.545 -7.101 1.943 1.00 0.00 C ATOM 50 NE ARG 5 -3.128 -7.913 3.008 1.00 0.00 N ATOM 51 CG ARG 5 -1.117 -6.685 2.260 1.00 0.00 C ATOM 52 CZ ARG 5 -3.076 -9.241 3.049 1.00 0.00 C ATOM 55 NH1 ARG 5 -3.635 -9.895 4.058 1.00 0.00 N ATOM 58 NH2 ARG 5 -2.467 -9.910 2.081 1.00 0.00 N ATOM 59 N LYS 6 1.042 -6.663 -2.054 1.00 0.00 N ATOM 60 CA LYS 6 1.486 -6.481 -3.436 1.00 0.00 C ATOM 61 C LYS 6 2.907 -6.978 -3.615 1.00 0.00 C ATOM 62 O LYS 6 3.184 -7.834 -4.482 1.00 0.00 O ATOM 64 CB LYS 6 1.385 -5.009 -3.841 1.00 0.00 C ATOM 65 CD LYS 6 0.739 -5.325 -6.246 1.00 0.00 C ATOM 66 CE LYS 6 1.135 -5.084 -7.694 1.00 0.00 C ATOM 67 CG LYS 6 1.762 -4.736 -5.288 1.00 0.00 C ATOM 71 NZ LYS 6 1.134 -3.635 -8.036 1.00 0.00 N ATOM 72 N LYS 7 3.826 -6.453 -2.813 1.00 0.00 N ATOM 73 CA LYS 7 4.062 -5.597 -0.745 1.00 0.00 C ATOM 74 C LYS 7 4.555 -4.238 -1.229 1.00 0.00 C ATOM 75 O LYS 7 4.558 -3.248 -0.509 1.00 0.00 O ATOM 77 CB LYS 7 5.015 -6.458 0.086 1.00 0.00 C ATOM 78 CD LYS 7 7.339 -7.330 0.456 1.00 0.00 C ATOM 79 CE LYS 7 8.778 -7.315 -0.035 1.00 0.00 C ATOM 80 CG LYS 7 6.451 -6.454 -0.412 1.00 0.00 C ATOM 84 NZ LYS 7 9.657 -8.183 0.796 1.00 0.00 N ATOM 85 N CYS 8 5.001 -4.178 -2.480 1.00 0.00 N ATOM 86 CA CYS 8 5.305 -2.860 -3.027 1.00 0.00 C ATOM 87 C CYS 8 3.794 -2.835 -2.994 1.00 0.00 C ATOM 88 O CYS 8 3.137 -3.868 -2.916 1.00 0.00 O ATOM 90 CB CYS 8 6.138 -2.989 -4.304 1.00 0.00 C ATOM 91 SG CYS 8 7.775 -3.715 -4.056 1.00 0.00 S ATOM 92 N THR 9 3.252 -1.624 -3.081 1.00 0.00 N ATOM 93 CA THR 9 1.993 -1.199 -3.733 1.00 0.00 C ATOM 94 C THR 9 1.814 -1.314 -2.232 1.00 0.00 C ATOM 95 O THR 9 1.424 -0.334 -1.594 1.00 0.00 O ATOM 97 CB THR 9 1.534 -2.219 -4.792 1.00 0.00 C ATOM 99 OG1 THR 9 2.537 -2.340 -5.810 1.00 0.00 O ATOM 100 CG2 THR 9 0.236 -1.766 -5.441 1.00 0.00 C ATOM 101 N GLU 10 2.078 -2.484 -1.647 1.00 0.00 N ATOM 102 CA GLU 10 1.987 -2.587 -0.149 1.00 0.00 C ATOM 103 C GLU 10 2.681 -1.478 0.633 1.00 0.00 C ATOM 104 O GLU 10 2.253 -1.064 1.703 1.00 0.00 O ATOM 106 CB GLU 10 2.561 -3.921 0.332 1.00 0.00 C ATOM 107 CD GLU 10 4.922 -3.494 1.122 1.00 0.00 C ATOM 108 CG GLU 10 4.043 -4.099 0.045 1.00 0.00 C ATOM 109 OE1 GLU 10 4.408 -3.232 2.229 1.00 0.00 O ATOM 110 OE2 GLU 10 6.124 -3.285 0.859 1.00 0.00 O ATOM 111 N MET 11 3.794 -0.984 0.102 1.00 0.00 N ATOM 112 CA MET 11 4.744 -0.123 0.887 1.00 0.00 C ATOM 113 C MET 11 3.844 1.107 0.923 1.00 0.00 C ATOM 114 O MET 11 3.823 1.875 1.877 1.00 0.00 O ATOM 116 CB MET 11 6.084 -0.003 0.159 1.00 0.00 C ATOM 117 SD MET 11 7.589 0.836 -2.012 1.00 0.00 S ATOM 118 CE MET 11 8.667 1.651 -0.837 1.00 0.00 C ATOM 119 CG MET 11 6.031 0.841 -1.105 1.00 0.00 C ATOM 120 N LYS 12 3.082 1.318 -0.144 1.00 0.00 N ATOM 121 CA LYS 12 2.164 2.525 -0.216 1.00 0.00 C ATOM 122 C LYS 12 1.126 2.382 0.892 1.00 0.00 C ATOM 123 O LYS 12 0.804 3.318 1.612 1.00 0.00 O ATOM 125 CB LYS 12 1.515 2.623 -1.597 1.00 0.00 C ATOM 126 CD LYS 12 3.003 4.401 -2.559 1.00 0.00 C ATOM 127 CE LYS 12 3.882 4.797 -3.734 1.00 0.00 C ATOM 128 CG LYS 12 2.483 2.981 -2.714 1.00 0.00 C ATOM 132 NZ LYS 12 4.445 6.167 -3.570 1.00 0.00 N ATOM 133 N LYS 13 0.570 1.185 1.034 1.00 0.00 N ATOM 134 CA LYS 13 -0.383 0.991 2.049 1.00 0.00 C ATOM 135 C LYS 13 0.206 1.150 3.447 1.00 0.00 C ATOM 136 O LYS 13 -0.359 1.787 4.327 1.00 0.00 O ATOM 138 CB LYS 13 -1.022 -0.394 1.927 1.00 0.00 C ATOM 139 CD LYS 13 -3.283 0.208 2.836 1.00 0.00 C ATOM 140 CE LYS 13 -4.380 -0.174 3.815 1.00 0.00 C ATOM 141 CG LYS 13 -2.067 -0.692 2.990 1.00 0.00 C ATOM 145 NZ LYS 13 -5.553 0.738 3.719 1.00 0.00 N ATOM 146 N LYS 14 1.366 0.548 3.674 1.00 0.00 N ATOM 147 CA LYS 14 2.014 0.745 4.956 1.00 0.00 C ATOM 148 C LYS 14 2.487 2.145 5.298 1.00 0.00 C ATOM 149 O LYS 14 2.588 2.510 6.482 1.00 0.00 O ATOM 151 CB LYS 14 3.234 -0.169 5.087 1.00 0.00 C ATOM 152 CD LYS 14 5.063 -1.094 6.534 1.00 0.00 C ATOM 153 CE LYS 14 5.774 -0.995 7.875 1.00 0.00 C ATOM 154 CG LYS 14 3.931 -0.085 6.434 1.00 0.00 C ATOM 158 NZ LYS 14 6.889 -1.976 7.985 1.00 0.00 N ATOM 159 N PHE 15 2.822 2.975 4.328 1.00 0.00 N ATOM 160 CA PHE 15 3.411 4.245 4.580 1.00 0.00 C ATOM 161 C PHE 15 2.180 5.009 5.043 1.00 0.00 C ATOM 162 O PHE 15 2.189 5.604 6.123 1.00 0.00 O ATOM 164 CB PHE 15 4.094 4.777 3.319 1.00 0.00 C ATOM 165 CG PHE 15 4.751 6.115 3.504 1.00 0.00 C ATOM 166 CZ PHE 15 5.961 8.595 3.845 1.00 0.00 C ATOM 167 CD1 PHE 15 5.946 6.227 4.192 1.00 0.00 C ATOM 168 CE1 PHE 15 6.550 7.457 4.363 1.00 0.00 C ATOM 169 CD2 PHE 15 4.173 7.263 2.990 1.00 0.00 C ATOM 170 CE2 PHE 15 4.778 8.495 3.161 1.00 0.00 C ATOM 171 N LYS 16 1.126 4.998 4.236 1.00 0.00 N ATOM 172 CA LYS 16 0.001 6.039 4.484 1.00 0.00 C ATOM 173 C LYS 16 -0.922 5.040 5.210 1.00 0.00 C ATOM 174 O LYS 16 -1.654 5.409 6.115 1.00 0.00 O ATOM 176 CB LYS 16 -0.474 6.640 3.161 1.00 0.00 C ATOM 177 CD LYS 16 0.024 8.073 1.160 1.00 0.00 C ATOM 178 CE LYS 16 1.059 8.943 0.467 1.00 0.00 C ATOM 179 CG LYS 16 0.569 7.493 2.455 1.00 0.00 C ATOM 183 NZ LYS 16 0.545 9.507 -0.812 1.00 0.00 N ATOM 184 N ASN 17 -0.891 3.772 4.807 1.00 0.00 N ATOM 185 CA ASN 17 -1.633 2.833 5.624 1.00 0.00 C ATOM 186 C ASN 17 -1.312 2.469 7.068 1.00 0.00 C ATOM 187 O ASN 17 -0.300 2.885 7.632 1.00 0.00 O ATOM 189 CB ASN 17 -1.690 1.462 4.946 1.00 0.00 C ATOM 190 CG ASN 17 -2.804 0.590 5.488 1.00 0.00 C ATOM 191 OD1 ASN 17 -2.581 -0.248 6.362 1.00 0.00 O ATOM 194 ND2 ASN 17 -4.011 0.783 4.969 1.00 0.00 N ATOM 195 N CYS 18 -2.210 1.718 7.706 1.00 0.00 N ATOM 196 CA CYS 18 -1.883 1.197 9.069 1.00 0.00 C ATOM 197 C CYS 18 -1.235 -0.121 8.709 1.00 0.00 C ATOM 198 O CYS 18 -1.876 -1.166 8.690 1.00 0.00 O ATOM 200 CB CYS 18 -3.148 1.099 9.923 1.00 0.00 C ATOM 201 SG CYS 18 -2.860 0.577 11.630 1.00 0.00 S ATOM 202 N GLU 19 0.066 -0.052 8.444 1.00 0.00 N ATOM 203 CA GLU 19 1.112 -1.084 8.598 1.00 0.00 C ATOM 204 C GLU 19 -0.081 -1.451 7.748 1.00 0.00 C ATOM 205 O GLU 19 -0.843 -2.344 8.131 1.00 0.00 O ATOM 207 CB GLU 19 1.333 -1.407 10.077 1.00 0.00 C ATOM 208 CD GLU 19 2.083 -0.597 12.349 1.00 0.00 C ATOM 209 CG GLU 19 1.797 -0.221 10.909 1.00 0.00 C ATOM 210 OE1 GLU 19 1.881 -1.776 12.707 1.00 0.00 O ATOM 211 OE2 GLU 19 2.510 0.288 13.120 1.00 0.00 O ATOM 212 N VAL 20 -0.317 -0.733 6.671 1.00 0.00 N ATOM 213 CA VAL 20 -0.988 -1.396 5.411 1.00 0.00 C ATOM 214 C VAL 20 -0.350 -2.021 4.189 1.00 0.00 C ATOM 215 O VAL 20 0.842 -1.762 3.970 1.00 0.00 O ATOM 217 CB VAL 20 -1.947 -0.422 4.703 1.00 0.00 C ATOM 218 CG1 VAL 20 -2.522 -1.058 3.447 1.00 0.00 C ATOM 219 CG2 VAL 20 -3.062 0.007 5.646 1.00 0.00 C ATOM 220 N ARG 21 -1.049 -2.857 3.404 1.00 0.00 N ATOM 221 CA ARG 21 -0.772 -3.034 2.129 1.00 0.00 C ATOM 222 C ARG 21 -1.679 -2.754 0.936 1.00 0.00 C ATOM 223 O ARG 21 -2.276 -1.677 0.857 1.00 0.00 O ATOM 225 CB ARG 21 -0.390 -4.491 1.862 1.00 0.00 C ATOM 226 CD ARG 21 1.332 -6.306 2.054 1.00 0.00 C ATOM 228 NE ARG 21 0.367 -7.331 2.446 1.00 0.00 N ATOM 229 CG ARG 21 0.911 -4.922 2.519 1.00 0.00 C ATOM 230 CZ ARG 21 0.371 -7.952 3.621 1.00 0.00 C ATOM 233 NH1 ARG 21 -0.547 -8.871 3.888 1.00 0.00 N ATOM 236 NH2 ARG 21 1.292 -7.651 4.526 1.00 0.00 N ATOM 237 N CYS 22 -1.823 -3.704 0.020 1.00 0.00 N ATOM 238 CA CYS 22 -1.771 -2.759 -1.557 1.00 0.00 C ATOM 239 C CYS 22 -3.181 -2.276 -1.192 1.00 0.00 C ATOM 240 O CYS 22 -3.641 -1.223 -1.681 1.00 0.00 O ATOM 242 CB CYS 22 -1.523 -3.699 -2.738 1.00 0.00 C ATOM 243 SG CYS 22 -2.887 -4.833 -3.088 1.00 0.00 S ATOM 244 N ASP 23 -3.873 -3.021 -0.306 1.00 0.00 N ATOM 245 CA ASP 23 -3.906 -4.738 0.889 1.00 0.00 C ATOM 246 C ASP 23 -4.167 -6.003 0.079 1.00 0.00 C ATOM 247 O ASP 23 -3.442 -6.279 -0.880 1.00 0.00 O ATOM 249 CB ASP 23 -4.967 -4.608 1.984 1.00 0.00 C ATOM 250 CG ASP 23 -6.372 -4.503 1.427 1.00 0.00 C ATOM 251 OD1 ASP 23 -6.513 -4.387 0.191 1.00 0.00 O ATOM 252 OD2 ASP 23 -7.333 -4.538 2.224 1.00 0.00 O ATOM 253 N GLU 24 -5.201 -6.763 0.418 1.00 0.00 N ATOM 254 CA GLU 24 -4.683 -8.327 0.163 1.00 0.00 C ATOM 255 C GLU 24 -5.830 -7.888 -0.753 1.00 0.00 C ATOM 256 O GLU 24 -6.147 -8.583 -1.721 1.00 0.00 O ATOM 258 CB GLU 24 -4.793 -9.144 1.453 1.00 0.00 C ATOM 259 CD GLU 24 -6.875 -8.315 2.616 1.00 0.00 C ATOM 260 CG GLU 24 -6.221 -9.459 1.867 1.00 0.00 C ATOM 261 OE1 GLU 24 -6.652 -7.148 2.231 1.00 0.00 O ATOM 262 OE2 GLU 24 -7.612 -8.585 3.588 1.00 0.00 O ATOM 263 N SER 25 -6.428 -6.733 -0.463 1.00 0.00 N ATOM 264 CA SER 25 -7.257 -5.988 -1.445 1.00 0.00 C ATOM 265 C SER 25 -7.154 -4.976 -2.590 1.00 0.00 C ATOM 266 O SER 25 -8.139 -4.733 -3.290 1.00 0.00 O ATOM 268 CB SER 25 -8.313 -5.145 -0.726 1.00 0.00 C ATOM 270 OG SER 25 -9.235 -5.967 -0.031 1.00 0.00 O ATOM 271 N ASN 26 -5.963 -4.410 -2.794 1.00 0.00 N ATOM 272 CA ASN 26 -5.910 -3.135 -3.616 1.00 0.00 C ATOM 273 C ASN 26 -5.120 -3.569 -4.840 1.00 0.00 C ATOM 274 O ASN 26 -4.729 -2.724 -5.653 1.00 0.00 O ATOM 276 CB ASN 26 -5.282 -1.999 -2.805 1.00 0.00 C ATOM 277 CG ASN 26 -6.154 -1.563 -1.643 1.00 0.00 C ATOM 278 OD1 ASN 26 -5.857 -1.860 -0.486 1.00 0.00 O ATOM 281 ND2 ASN 26 -7.234 -0.855 -1.949 1.00 0.00 N ATOM 282 N HIS 27 -4.885 -4.882 -4.917 1.00 0.00 N ATOM 283 CA HIS 27 -4.278 -5.552 -6.016 1.00 0.00 C ATOM 284 C HIS 27 -3.089 -4.608 -6.100 1.00 0.00 C ATOM 285 O HIS 27 -2.874 -3.966 -7.117 1.00 0.00 O ATOM 287 CB HIS 27 -5.239 -5.610 -7.205 1.00 0.00 C ATOM 288 CG HIS 27 -6.515 -6.337 -6.915 1.00 0.00 C ATOM 289 ND1 HIS 27 -6.560 -7.692 -6.665 1.00 0.00 N ATOM 290 CE1 HIS 27 -7.836 -8.054 -6.441 1.00 0.00 C ATOM 291 CD2 HIS 27 -7.919 -5.968 -6.808 1.00 0.00 C ATOM 293 NE2 HIS 27 -8.656 -7.025 -6.525 1.00 0.00 N ATOM 294 N CYS 28 -2.316 -4.528 -5.024 1.00 0.00 N ATOM 295 CA CYS 28 -0.928 -3.948 -4.992 1.00 0.00 C ATOM 296 C CYS 28 -1.477 -2.590 -5.420 1.00 0.00 C ATOM 297 O CYS 28 -1.075 -1.983 -6.431 1.00 0.00 O ATOM 299 CB CYS 28 0.001 -4.729 -5.924 1.00 0.00 C ATOM 300 SG CYS 28 0.167 -6.482 -5.516 1.00 0.00 S ATOM 301 N VAL 29 -2.497 -2.183 -4.667 1.00 0.00 N ATOM 302 CA VAL 29 -3.083 -0.743 -4.825 1.00 0.00 C ATOM 303 C VAL 29 -2.194 0.433 -4.440 1.00 0.00 C ATOM 304 O VAL 29 -1.044 0.180 -4.124 1.00 0.00 O ATOM 306 CB VAL 29 -4.383 -0.572 -4.019 1.00 0.00 C ATOM 307 CG1 VAL 29 -4.880 0.863 -4.106 1.00 0.00 C ATOM 308 CG2 VAL 29 -5.448 -1.539 -4.513 1.00 0.00 C ATOM 309 N GLU 30 -2.843 1.552 -4.158 1.00 0.00 N ATOM 310 CA GLU 30 -2.151 2.948 -4.379 1.00 0.00 C ATOM 311 C GLU 30 -0.958 2.941 -3.434 1.00 0.00 C ATOM 312 O GLU 30 0.016 3.662 -3.655 1.00 0.00 O ATOM 314 CB GLU 30 -3.138 4.084 -4.107 1.00 0.00 C ATOM 315 CD GLU 30 -5.231 5.309 -4.812 1.00 0.00 C ATOM 316 CG GLU 30 -4.248 4.203 -5.138 1.00 0.00 C ATOM 317 OE1 GLU 30 -4.983 6.058 -3.843 1.00 0.00 O ATOM 318 OE2 GLU 30 -6.251 5.427 -5.524 1.00 0.00 O ATOM 319 N VAL 31 -1.034 2.155 -2.349 1.00 0.00 N ATOM 320 CA VAL 31 -2.443 0.925 -1.165 1.00 0.00 C ATOM 321 C VAL 31 -3.357 1.348 -0.021 1.00 0.00 C ATOM 322 O VAL 31 -2.954 2.154 0.821 1.00 0.00 O ATOM 324 CB VAL 31 -1.727 -0.258 -0.488 1.00 0.00 C ATOM 325 CG1 VAL 31 -1.125 -1.185 -1.533 1.00 0.00 C ATOM 326 CG2 VAL 31 -0.655 0.243 0.467 1.00 0.00 C ATOM 327 N ARG 32 -4.565 0.803 0.053 1.00 0.00 N ATOM 328 CA ARG 32 -5.649 2.022 0.686 1.00 0.00 C ATOM 329 C ARG 32 -5.381 0.880 1.620 1.00 0.00 C ATOM 330 O ARG 32 -5.800 0.882 2.791 1.00 0.00 O ATOM 332 CB ARG 32 -6.857 2.196 -0.236 1.00 0.00 C ATOM 333 CD ARG 32 -7.759 2.921 -2.463 1.00 0.00 C ATOM 335 NE ARG 32 -7.446 3.449 -3.789 1.00 0.00 N ATOM 336 CG ARG 32 -6.511 2.724 -1.619 1.00 0.00 C ATOM 337 CZ ARG 32 -8.357 3.745 -4.710 1.00 0.00 C ATOM 340 NH1 ARG 32 -7.978 4.220 -5.889 1.00 0.00 N ATOM 343 NH2 ARG 32 -9.644 3.564 -4.451 1.00 0.00 N ATOM 344 N CYS 33 -4.671 -0.161 1.150 1.00 0.00 N ATOM 345 CA CYS 33 -4.256 -1.295 2.013 1.00 0.00 C ATOM 346 C CYS 33 -5.321 -1.933 2.897 1.00 0.00 C ATOM 347 O CYS 33 -6.052 -1.257 3.620 1.00 0.00 O ATOM 349 CB CYS 33 -3.115 -0.872 2.940 1.00 0.00 C ATOM 350 SG CYS 33 -2.469 -2.201 3.982 1.00 0.00 S ATOM 351 N SER 34 -5.451 -3.256 2.809 1.00 0.00 N ATOM 352 CA SER 34 -6.337 -3.916 3.712 1.00 0.00 C ATOM 353 C SER 34 -5.492 -4.200 4.948 1.00 0.00 C ATOM 354 O SER 34 -4.581 -5.027 4.901 1.00 0.00 O ATOM 356 CB SER 34 -6.917 -5.177 3.070 1.00 0.00 C ATOM 358 OG SER 34 -7.736 -5.885 3.984 1.00 0.00 O ATOM 359 N ASP 35 -5.796 -3.527 6.056 1.00 0.00 N ATOM 360 CA ASP 35 -4.894 -3.358 7.180 1.00 0.00 C ATOM 361 C ASP 35 -5.007 -4.849 7.427 1.00 0.00 C ATOM 362 O ASP 35 -4.082 -5.440 7.987 1.00 0.00 O ATOM 364 CB ASP 35 -5.464 -2.348 8.178 1.00 0.00 C ATOM 365 CG ASP 35 -6.818 -2.764 8.718 1.00 0.00 C ATOM 366 OD1 ASP 35 -7.747 -2.961 7.906 1.00 0.00 O ATOM 367 OD2 ASP 35 -6.951 -2.894 9.953 1.00 0.00 O ATOM 368 N THR 36 -6.117 -5.478 7.033 1.00 0.00 N ATOM 369 CA THR 36 -6.316 -6.847 7.305 1.00 0.00 C ATOM 370 C THR 36 -5.203 -7.689 6.722 1.00 0.00 C ATOM 371 O THR 36 -4.853 -8.715 7.302 1.00 0.00 O ATOM 373 CB THR 36 -7.669 -7.340 6.758 1.00 0.00 C ATOM 375 OG1 THR 36 -8.734 -6.620 7.389 1.00 0.00 O ATOM 376 CG2 THR 36 -7.850 -8.823 7.043 1.00 0.00 C ATOM 377 N LYS 37 -4.636 -7.269 5.596 1.00 0.00 N ATOM 378 CA LYS 37 -3.418 -7.896 4.973 1.00 0.00 C ATOM 379 C LYS 37 -2.225 -7.081 4.487 1.00 0.00 C ATOM 380 O LYS 37 -1.798 -7.188 3.341 1.00 0.00 O ATOM 382 CB LYS 37 -3.809 -8.722 3.746 1.00 0.00 C ATOM 383 CD LYS 37 -3.996 -10.961 4.867 1.00 0.00 C ATOM 384 CE LYS 37 -4.911 -12.131 5.188 1.00 0.00 C ATOM 385 CG LYS 37 -4.719 -9.900 4.055 1.00 0.00 C ATOM 389 NZ LYS 37 -4.217 -13.174 5.992 1.00 0.00 N ATOM 390 N TYR 38 -1.690 -6.264 5.382 1.00 0.00 N ATOM 391 CA TYR 38 -0.601 -5.334 5.009 1.00 0.00 C ATOM 392 C TYR 38 0.475 -5.442 6.072 1.00 0.00 C ATOM 393 O TYR 38 0.623 -6.472 6.743 1.00 0.00 O ATOM 395 CB TYR 38 -1.136 -3.907 4.877 1.00 0.00 C ATOM 396 CG TYR 38 -1.671 -3.332 6.170 1.00 0.00 C ATOM 398 OH TYR 38 -3.123 -1.749 9.730 1.00 0.00 O ATOM 399 CZ TYR 38 -2.644 -2.273 8.551 1.00 0.00 C ATOM 400 CD1 TYR 38 -0.806 -2.939 7.185 1.00 0.00 C ATOM 401 CE1 TYR 38 -1.285 -2.413 8.369 1.00 0.00 C ATOM 402 CD2 TYR 38 -3.037 -3.183 6.372 1.00 0.00 C ATOM 403 CE2 TYR 38 -3.533 -2.658 7.549 1.00 0.00 C ATOM 404 N THR 39 1.292 -4.386 6.163 1.00 0.00 N ATOM 405 CA THR 39 2.541 -4.356 6.984 1.00 0.00 C ATOM 406 C THR 39 3.546 -4.777 5.936 1.00 0.00 C ATOM 407 O THR 39 4.041 -5.899 5.935 1.00 0.00 O ATOM 409 CB THR 39 2.435 -5.286 8.206 1.00 0.00 C ATOM 411 OG1 THR 39 1.289 -4.926 8.987 1.00 0.00 O ATOM 412 CG2 THR 39 3.676 -5.162 9.079 1.00 0.00 C ATOM 413 N LEU 40 3.859 -3.836 5.049 1.00 0.00 N ATOM 414 CA LEU 40 5.171 -3.577 4.319 1.00 0.00 C ATOM 415 C LEU 40 4.456 -5.104 2.992 1.00 0.00 C ATOM 416 O LEU 40 5.303 -5.571 2.229 1.00 0.00 O ATOM 418 CB LEU 40 6.358 -3.790 5.260 1.00 0.00 C ATOM 419 CG LEU 40 7.747 -3.547 4.665 1.00 0.00 C ATOM 420 CD1 LEU 40 7.890 -2.101 4.212 1.00 0.00 C ATOM 421 CD2 LEU 40 8.831 -3.896 5.672 1.00 0.00 C ATOM 422 N CYS 41 3.188 -5.510 3.012 1.00 0.00 N ATOM 423 CA CYS 41 2.694 -6.173 2.995 1.00 0.00 C ATOM 424 C CYS 41 4.236 -7.785 2.252 1.00 0.00 C ATOM 425 O CYS 41 4.703 -8.618 1.482 1.00 0.00 O ATOM 427 OXT CYS 41 5.239 -8.488 2.315 1.00 0.00 O ATOM 428 CB CYS 41 1.492 -5.922 2.081 1.00 0.00 C ATOM 429 SG CYS 41 0.376 -4.620 2.656 1.00 0.00 S TER END