####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS085_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 12 - 34 4.98 14.94 LONGEST_CONTINUOUS_SEGMENT: 23 13 - 35 4.96 15.42 LONGEST_CONTINUOUS_SEGMENT: 23 14 - 36 4.92 16.13 LONGEST_CONTINUOUS_SEGMENT: 23 15 - 37 4.85 17.06 LCS_AVERAGE: 51.28 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 1.74 17.50 LONGEST_CONTINUOUS_SEGMENT: 14 4 - 17 1.86 17.26 LCS_AVERAGE: 27.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 4 - 16 0.85 17.78 LCS_AVERAGE: 19.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 5 20 3 3 4 5 5 5 5 6 7 11 13 18 18 23 24 25 26 26 29 29 LCS_GDT Q 2 Q 2 4 5 20 3 3 4 5 5 5 5 6 14 17 18 21 21 24 24 25 26 27 29 31 LCS_GDT E 3 E 3 4 14 20 3 3 5 9 11 13 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT T 4 T 4 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT R 5 R 5 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 6 K 6 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 7 K 7 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT C 8 C 8 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT T 9 T 9 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT E 10 E 10 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT M 11 M 11 13 14 20 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 12 K 12 13 14 23 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 13 K 13 13 14 23 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 14 K 14 13 14 23 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT F 15 F 15 13 14 23 5 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 16 K 16 13 14 23 4 6 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT N 17 N 17 5 14 23 4 4 5 7 11 13 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT C 18 C 18 5 8 23 4 5 7 8 11 13 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT E 19 E 19 5 13 23 3 4 6 12 13 14 16 17 18 19 21 23 23 24 24 25 26 27 29 31 LCS_GDT V 20 V 20 5 13 23 4 6 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 29 31 LCS_GDT R 21 R 21 9 13 23 3 6 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 31 LCS_GDT C 22 C 22 9 13 23 3 4 9 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT D 23 D 23 9 13 23 4 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT E 24 E 24 9 13 23 5 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT S 25 S 25 9 13 23 5 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT N 26 N 26 9 13 23 4 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT H 27 H 27 9 13 23 5 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT C 28 C 28 9 13 23 5 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT V 29 V 29 9 13 23 5 7 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT E 30 E 30 9 13 23 3 6 10 12 13 14 16 17 18 18 19 20 21 23 23 24 25 27 28 29 LCS_GDT V 31 V 31 5 13 23 4 6 7 11 13 14 16 17 18 18 19 20 21 23 23 24 25 27 29 31 LCS_GDT R 32 R 32 5 7 23 4 5 7 8 9 11 16 17 18 18 19 20 21 23 23 25 26 27 29 31 LCS_GDT C 33 C 33 5 7 23 4 5 7 8 11 13 15 17 18 19 21 23 23 24 24 25 26 27 29 31 LCS_GDT S 34 S 34 3 7 23 3 3 4 7 11 14 16 17 18 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT D 35 D 35 4 7 23 3 4 6 8 12 13 14 17 18 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT T 36 T 36 4 6 23 3 4 4 4 7 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT K 37 K 37 4 6 23 3 4 4 5 5 9 9 16 19 20 21 23 23 24 24 25 26 27 29 31 LCS_GDT Y 38 Y 38 4 6 11 3 4 4 5 7 14 15 18 19 19 21 23 23 24 24 25 26 27 29 31 LCS_GDT T 39 T 39 4 6 11 3 3 4 5 7 9 9 10 13 19 20 23 23 24 24 25 26 27 29 31 LCS_GDT L 40 L 40 4 4 11 3 3 4 5 6 9 10 12 12 15 16 17 20 22 23 24 26 27 29 31 LCS_GDT C 41 C 41 4 4 11 3 3 4 4 4 4 4 5 5 12 14 17 19 22 23 23 25 27 28 31 LCS_AVERAGE LCS_A: 32.82 ( 19.99 27.19 51.28 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 12 12 13 13 14 16 18 19 20 21 23 23 24 24 25 26 27 29 31 GDT PERCENT_AT 26.83 29.27 29.27 31.71 31.71 34.15 39.02 43.90 46.34 48.78 51.22 56.10 56.10 58.54 58.54 60.98 63.41 65.85 70.73 75.61 GDT RMS_LOCAL 0.25 0.42 0.42 0.85 0.85 1.30 2.29 2.63 2.76 3.26 3.40 3.77 3.77 4.01 4.05 4.29 4.63 5.17 5.86 6.58 GDT RMS_ALL_AT 18.22 18.07 18.07 17.78 17.78 17.62 16.83 16.65 16.61 16.58 16.46 16.09 16.09 15.84 16.06 15.84 15.83 15.24 14.76 13.99 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: F 15 F 15 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 10.251 0 0.071 0.648 10.700 0.000 0.000 10.040 LGA Q 2 Q 2 8.676 0 0.180 1.195 16.993 0.000 0.000 15.616 LGA E 3 E 3 4.122 0 0.056 1.379 5.285 16.818 14.343 2.684 LGA T 4 T 4 3.042 0 0.617 1.355 7.357 37.273 21.299 7.357 LGA R 5 R 5 2.044 0 0.039 0.773 5.397 48.182 25.950 5.397 LGA K 6 K 6 1.611 0 0.026 1.225 6.049 62.273 35.556 5.435 LGA K 7 K 7 1.348 0 0.029 0.937 7.643 70.000 37.980 7.643 LGA C 8 C 8 1.315 0 0.024 0.023 2.344 65.455 58.485 2.344 LGA T 9 T 9 0.827 0 0.027 0.079 1.510 70.000 72.727 0.578 LGA E 10 E 10 1.074 0 0.030 0.145 2.074 65.909 57.778 1.944 LGA M 11 M 11 0.988 0 0.086 0.935 3.730 66.364 67.500 3.730 LGA K 12 K 12 2.310 0 0.052 0.657 4.533 33.636 28.485 4.339 LGA K 13 K 13 2.836 0 0.037 0.583 3.444 27.727 28.081 1.728 LGA K 14 K 14 2.461 0 0.045 0.596 2.696 32.727 37.374 2.681 LGA F 15 F 15 2.559 0 0.441 1.337 10.276 35.909 14.711 10.276 LGA K 16 K 16 1.377 0 0.129 1.270 6.490 52.273 29.495 6.490 LGA N 17 N 17 3.710 0 0.055 0.471 6.172 16.818 8.636 6.172 LGA C 18 C 18 4.410 0 0.616 0.642 7.435 5.909 14.848 2.018 LGA E 19 E 19 7.789 0 0.277 0.977 11.646 0.000 0.000 7.366 LGA V 20 V 20 14.054 0 0.078 0.082 17.849 0.000 0.000 17.849 LGA R 21 R 21 18.535 0 0.113 1.431 22.036 0.000 0.000 19.755 LGA C 22 C 22 24.676 0 0.127 0.900 25.740 0.000 0.000 25.507 LGA D 23 D 23 28.524 0 0.215 0.955 31.269 0.000 0.000 29.557 LGA E 24 E 24 33.652 0 0.061 1.129 37.966 0.000 0.000 33.329 LGA S 25 S 25 38.121 0 0.030 0.636 41.416 0.000 0.000 37.031 LGA N 26 N 26 38.191 0 0.063 1.182 39.613 0.000 0.000 34.715 LGA H 27 H 27 37.161 0 0.039 1.130 42.170 0.000 0.000 42.170 LGA C 28 C 28 33.216 0 0.103 0.111 36.932 0.000 0.000 36.932 LGA V 29 V 29 26.890 0 0.065 0.078 29.427 0.000 0.000 23.943 LGA E 30 E 30 22.654 0 0.044 1.157 27.279 0.000 0.000 27.279 LGA V 31 V 31 15.454 0 0.084 0.123 18.259 0.000 0.000 11.634 LGA R 32 R 32 14.261 0 0.579 1.172 22.439 0.000 0.000 21.305 LGA C 33 C 33 8.878 0 0.518 0.927 10.226 0.000 0.000 5.835 LGA S 34 S 34 9.944 0 0.113 0.131 11.412 0.000 0.000 11.412 LGA D 35 D 35 9.006 0 0.614 0.907 10.432 0.000 0.000 10.130 LGA T 36 T 36 3.169 0 0.051 0.093 4.812 10.909 25.455 1.802 LGA K 37 K 37 4.786 0 0.222 1.640 13.410 5.909 2.626 13.410 LGA Y 38 Y 38 3.689 0 0.641 1.444 9.862 11.364 3.788 9.862 LGA T 39 T 39 7.334 0 0.149 0.184 10.430 0.000 0.000 8.121 LGA L 40 L 40 12.853 0 0.116 0.945 15.253 0.000 0.000 14.603 LGA C 41 C 41 18.106 0 0.457 0.929 22.497 0.000 0.000 16.155 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 10.811 10.646 11.681 17.938 14.271 9.313 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 18 2.63 41.463 37.937 0.660 LGA_LOCAL RMSD: 2.626 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.649 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 10.811 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.057256 * X + 0.867410 * Y + -0.494289 * Z + 8.032553 Y_new = 0.505397 * X + -0.401793 * Y + -0.763634 * Z + -10.745275 Z_new = -0.860986 * X + -0.293535 * Y + -0.415381 * Z + -1.564555 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.683605 1.037204 -2.526407 [DEG: 96.4635 59.4274 -144.7525 ] ZXZ: -0.574465 1.999158 -1.899368 [DEG: -32.9144 114.5433 -108.8257 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS085_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 18 2.63 37.937 10.81 REMARK ---------------------------------------------------------- MOLECULE T0955TS085_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 6.146 -7.097 -3.080 1.00 0.00 ATOM 5 CA SER 1 4.933 -7.073 -3.912 1.00 0.00 ATOM 7 CB SER 1 4.613 -8.492 -4.433 1.00 0.00 ATOM 10 OG SER 1 4.380 -9.397 -3.359 1.00 0.00 ATOM 12 C SER 1 3.763 -6.572 -3.130 1.00 0.00 ATOM 13 O SER 1 3.684 -6.773 -1.919 1.00 0.00 ATOM 14 N GLN 2 2.798 -5.936 -3.833 1.00 0.00 ATOM 16 CA GLN 2 1.601 -5.398 -3.229 1.00 0.00 ATOM 18 CB GLN 2 0.757 -4.531 -4.180 1.00 0.00 ATOM 21 CG GLN 2 1.431 -3.192 -4.519 1.00 0.00 ATOM 24 CD GLN 2 0.570 -2.341 -5.455 1.00 0.00 ATOM 25 OE1 GLN 2 -0.566 -2.643 -5.823 1.00 0.00 ATOM 26 NE2 GLN 2 1.158 -1.191 -5.871 1.00 0.00 ATOM 29 C GLN 2 0.740 -6.498 -2.669 1.00 0.00 ATOM 30 O GLN 2 -0.003 -6.268 -1.714 1.00 0.00 ATOM 31 N GLU 3 0.849 -7.719 -3.251 1.00 0.00 ATOM 33 CA GLU 3 0.127 -8.900 -2.849 1.00 0.00 ATOM 35 CB GLU 3 0.481 -10.128 -3.706 1.00 0.00 ATOM 38 CG GLU 3 -0.023 -10.098 -5.155 1.00 0.00 ATOM 41 CD GLU 3 0.494 -11.303 -5.952 1.00 0.00 ATOM 42 OE1 GLU 3 1.306 -12.121 -5.439 1.00 0.00 ATOM 43 OE2 GLU 3 0.060 -11.416 -7.128 1.00 0.00 ATOM 44 C GLU 3 0.503 -9.277 -1.440 1.00 0.00 ATOM 45 O GLU 3 -0.370 -9.678 -0.669 1.00 0.00 ATOM 46 N THR 4 1.806 -9.144 -1.076 1.00 0.00 ATOM 48 CA THR 4 2.301 -9.462 0.240 1.00 0.00 ATOM 50 CB THR 4 3.815 -9.442 0.288 1.00 0.00 ATOM 52 CG2 THR 4 4.331 -9.841 1.684 1.00 0.00 ATOM 56 OG1 THR 4 4.324 -10.371 -0.658 1.00 0.00 ATOM 58 C THR 4 1.719 -8.450 1.196 1.00 0.00 ATOM 59 O THR 4 1.766 -7.241 0.951 1.00 0.00 ATOM 60 N ARG 5 1.170 -8.958 2.326 1.00 0.00 ATOM 62 CA ARG 5 0.540 -8.146 3.339 1.00 0.00 ATOM 64 CB ARG 5 -0.123 -8.959 4.464 1.00 0.00 ATOM 67 CG ARG 5 -1.382 -9.725 4.045 1.00 0.00 ATOM 70 CD ARG 5 -2.208 -10.247 5.228 1.00 0.00 ATOM 73 NE ARG 5 -1.375 -11.212 6.013 1.00 0.00 ATOM 75 CZ ARG 5 -1.322 -12.552 5.735 1.00 0.00 ATOM 76 NH1 ARG 5 -0.484 -13.334 6.474 1.00 0.00 ATOM 79 NH2 ARG 5 -2.080 -13.125 4.752 1.00 0.00 ATOM 82 C ARG 5 1.525 -7.224 3.994 1.00 0.00 ATOM 83 O ARG 5 1.191 -6.069 4.263 1.00 0.00 ATOM 84 N LYS 6 2.773 -7.707 4.214 1.00 0.00 ATOM 86 CA LYS 6 3.830 -6.945 4.842 1.00 0.00 ATOM 88 CB LYS 6 5.132 -7.746 4.980 1.00 0.00 ATOM 91 CG LYS 6 5.102 -8.893 5.983 1.00 0.00 ATOM 94 CD LYS 6 6.439 -9.624 6.016 1.00 0.00 ATOM 97 CE LYS 6 6.477 -10.841 6.933 1.00 0.00 ATOM 100 NZ LYS 6 7.808 -11.469 6.841 1.00 0.00 ATOM 104 C LYS 6 4.187 -5.763 3.984 1.00 0.00 ATOM 105 O LYS 6 4.322 -4.649 4.495 1.00 0.00 ATOM 106 N LYS 7 4.304 -5.986 2.650 1.00 0.00 ATOM 108 CA LYS 7 4.635 -4.930 1.729 1.00 0.00 ATOM 110 CB LYS 7 5.145 -5.400 0.362 1.00 0.00 ATOM 113 CG LYS 7 6.560 -5.981 0.423 1.00 0.00 ATOM 116 CD LYS 7 7.597 -4.915 0.795 1.00 0.00 ATOM 119 CE LYS 7 9.044 -5.399 0.861 1.00 0.00 ATOM 122 NZ LYS 7 9.918 -4.267 1.231 1.00 0.00 ATOM 126 C LYS 7 3.530 -3.937 1.573 1.00 0.00 ATOM 127 O LYS 7 3.811 -2.750 1.421 1.00 0.00 ATOM 128 N CYS 8 2.255 -4.389 1.646 1.00 0.00 ATOM 130 CA CYS 8 1.101 -3.526 1.549 1.00 0.00 ATOM 132 CB CYS 8 -0.205 -4.344 1.550 1.00 0.00 ATOM 135 SG CYS 8 -1.714 -3.357 1.347 1.00 0.00 ATOM 137 C CYS 8 1.092 -2.579 2.736 1.00 0.00 ATOM 138 O CYS 8 0.856 -1.380 2.571 1.00 0.00 ATOM 139 N THR 9 1.423 -3.100 3.947 1.00 0.00 ATOM 141 CA THR 9 1.471 -2.345 5.182 1.00 0.00 ATOM 143 CB THR 9 1.647 -3.262 6.378 1.00 0.00 ATOM 145 CG2 THR 9 1.666 -2.455 7.695 1.00 0.00 ATOM 149 OG1 THR 9 0.549 -4.164 6.443 1.00 0.00 ATOM 151 C THR 9 2.606 -1.337 5.115 1.00 0.00 ATOM 152 O THR 9 2.435 -0.190 5.534 1.00 0.00 ATOM 153 N GLU 10 3.768 -1.733 4.536 1.00 0.00 ATOM 155 CA GLU 10 4.932 -0.886 4.398 1.00 0.00 ATOM 157 CB GLU 10 6.123 -1.649 3.781 1.00 0.00 ATOM 160 CG GLU 10 7.449 -0.877 3.712 1.00 0.00 ATOM 163 CD GLU 10 8.494 -1.736 3.012 1.00 0.00 ATOM 164 OE1 GLU 10 8.800 -2.852 3.509 1.00 0.00 ATOM 165 OE2 GLU 10 9.007 -1.287 1.952 1.00 0.00 ATOM 166 C GLU 10 4.606 0.283 3.500 1.00 0.00 ATOM 167 O GLU 10 4.973 1.419 3.807 1.00 0.00 ATOM 168 N MET 11 3.860 0.025 2.400 1.00 0.00 ATOM 170 CA MET 11 3.455 1.029 1.450 1.00 0.00 ATOM 172 CB MET 11 2.796 0.430 0.204 1.00 0.00 ATOM 175 CG MET 11 3.748 -0.331 -0.725 1.00 0.00 ATOM 178 SD MET 11 5.080 0.660 -1.468 1.00 0.00 ATOM 179 CE MET 11 4.001 1.539 -2.636 1.00 0.00 ATOM 183 C MET 11 2.502 2.008 2.080 1.00 0.00 ATOM 184 O MET 11 2.654 3.210 1.875 1.00 0.00 ATOM 185 N LYS 12 1.611 1.529 2.988 1.00 0.00 ATOM 187 CA LYS 12 0.663 2.370 3.688 1.00 0.00 ATOM 189 CB LYS 12 -0.332 1.576 4.546 1.00 0.00 ATOM 192 CG LYS 12 -1.356 0.770 3.751 1.00 0.00 ATOM 195 CD LYS 12 -2.283 -0.023 4.666 1.00 0.00 ATOM 198 CE LYS 12 -3.265 -0.933 3.936 1.00 0.00 ATOM 201 NZ LYS 12 -4.055 -1.681 4.932 1.00 0.00 ATOM 205 C LYS 12 1.397 3.302 4.620 1.00 0.00 ATOM 206 O LYS 12 1.029 4.472 4.731 1.00 0.00 ATOM 207 N LYS 13 2.474 2.806 5.282 1.00 0.00 ATOM 209 CA LYS 13 3.286 3.583 6.196 1.00 0.00 ATOM 211 CB LYS 13 4.319 2.736 6.952 1.00 0.00 ATOM 214 CG LYS 13 3.691 1.804 7.987 1.00 0.00 ATOM 217 CD LYS 13 4.716 0.958 8.737 1.00 0.00 ATOM 220 CE LYS 13 4.089 -0.008 9.739 1.00 0.00 ATOM 223 NZ LYS 13 5.148 -0.787 10.406 1.00 0.00 ATOM 227 C LYS 13 4.025 4.659 5.445 1.00 0.00 ATOM 228 O LYS 13 4.144 5.786 5.929 1.00 0.00 ATOM 229 N LYS 14 4.513 4.329 4.224 1.00 0.00 ATOM 231 CA LYS 14 5.212 5.256 3.371 1.00 0.00 ATOM 233 CB LYS 14 5.881 4.580 2.163 1.00 0.00 ATOM 236 CG LYS 14 7.095 3.746 2.577 1.00 0.00 ATOM 239 CD LYS 14 7.808 3.022 1.436 1.00 0.00 ATOM 242 CE LYS 14 9.014 2.223 1.931 1.00 0.00 ATOM 245 NZ LYS 14 9.631 1.468 0.825 1.00 0.00 ATOM 249 C LYS 14 4.261 6.327 2.907 1.00 0.00 ATOM 250 O LYS 14 4.659 7.486 2.807 1.00 0.00 ATOM 251 N PHE 15 2.972 5.968 2.654 1.00 0.00 ATOM 253 CA PHE 15 1.949 6.899 2.237 1.00 0.00 ATOM 255 CB PHE 15 0.642 6.211 1.750 1.00 0.00 ATOM 258 CG PHE 15 -0.292 7.267 1.243 1.00 0.00 ATOM 259 CD1 PHE 15 -0.050 7.877 0.005 1.00 0.00 ATOM 261 CE1 PHE 15 -0.901 8.873 -0.473 1.00 0.00 ATOM 263 CZ PHE 15 -2.006 9.262 0.285 1.00 0.00 ATOM 265 CE2 PHE 15 -2.266 8.653 1.514 1.00 0.00 ATOM 267 CD2 PHE 15 -1.412 7.656 1.989 1.00 0.00 ATOM 269 C PHE 15 1.659 7.855 3.378 1.00 0.00 ATOM 270 O PHE 15 1.439 9.043 3.132 1.00 0.00 ATOM 271 N LYS 16 1.678 7.365 4.647 1.00 0.00 ATOM 273 CA LYS 16 1.448 8.196 5.815 1.00 0.00 ATOM 275 CB LYS 16 1.523 7.426 7.146 1.00 0.00 ATOM 278 CG LYS 16 0.380 6.450 7.415 1.00 0.00 ATOM 281 CD LYS 16 0.575 5.707 8.738 1.00 0.00 ATOM 284 CE LYS 16 -0.484 4.652 9.041 1.00 0.00 ATOM 287 NZ LYS 16 -0.140 3.963 10.302 1.00 0.00 ATOM 291 C LYS 16 2.549 9.233 5.866 1.00 0.00 ATOM 292 O LYS 16 2.292 10.395 6.176 1.00 0.00 ATOM 293 N ASN 17 3.796 8.822 5.526 1.00 0.00 ATOM 295 CA ASN 17 4.955 9.682 5.483 1.00 0.00 ATOM 297 CB ASN 17 6.259 8.887 5.268 1.00 0.00 ATOM 300 CG ASN 17 6.646 8.109 6.529 1.00 0.00 ATOM 301 OD1 ASN 17 6.297 8.419 7.670 1.00 0.00 ATOM 302 ND2 ASN 17 7.393 7.001 6.291 1.00 0.00 ATOM 305 C ASN 17 4.817 10.684 4.355 1.00 0.00 ATOM 306 O ASN 17 5.243 11.831 4.498 1.00 0.00 ATOM 307 N CYS 18 4.200 10.272 3.212 1.00 0.00 ATOM 309 CA CYS 18 3.971 11.099 2.043 1.00 0.00 ATOM 311 CB CYS 18 3.285 10.368 0.876 1.00 0.00 ATOM 314 SG CYS 18 4.326 9.088 0.128 1.00 0.00 ATOM 316 C CYS 18 3.086 12.253 2.398 1.00 0.00 ATOM 317 O CYS 18 3.270 13.350 1.869 1.00 0.00 ATOM 318 N GLU 19 2.097 12.010 3.296 1.00 0.00 ATOM 320 CA GLU 19 1.195 13.023 3.784 1.00 0.00 ATOM 322 CB GLU 19 0.100 12.462 4.709 1.00 0.00 ATOM 325 CG GLU 19 -0.847 11.470 4.025 1.00 0.00 ATOM 328 CD GLU 19 -1.874 10.979 5.039 1.00 0.00 ATOM 329 OE1 GLU 19 -1.478 10.362 6.064 1.00 0.00 ATOM 330 OE2 GLU 19 -3.086 11.219 4.801 1.00 0.00 ATOM 331 C GLU 19 2.030 13.989 4.587 1.00 0.00 ATOM 332 O GLU 19 2.929 13.577 5.326 1.00 0.00 ATOM 333 N VAL 20 1.763 15.307 4.421 1.00 0.00 ATOM 335 CA VAL 20 2.496 16.350 5.106 1.00 0.00 ATOM 337 CB VAL 20 2.146 17.735 4.589 1.00 0.00 ATOM 339 CG1 VAL 20 2.908 18.821 5.369 1.00 0.00 ATOM 343 CG2 VAL 20 2.392 17.788 3.070 1.00 0.00 ATOM 347 C VAL 20 2.137 16.223 6.565 1.00 0.00 ATOM 348 O VAL 20 0.958 16.252 6.929 1.00 0.00 ATOM 349 N ARG 21 3.172 16.063 7.418 1.00 0.00 ATOM 351 CA ARG 21 2.971 15.894 8.834 1.00 0.00 ATOM 353 CB ARG 21 3.139 14.434 9.326 1.00 0.00 ATOM 356 CG ARG 21 2.135 13.410 8.799 1.00 0.00 ATOM 359 CD ARG 21 2.390 12.005 9.347 1.00 0.00 ATOM 362 NE ARG 21 1.345 11.091 8.794 1.00 0.00 ATOM 364 CZ ARG 21 0.118 10.935 9.384 1.00 0.00 ATOM 365 NH1 ARG 21 -0.802 10.109 8.806 1.00 0.00 ATOM 368 NH2 ARG 21 -0.208 11.574 10.547 1.00 0.00 ATOM 371 C ARG 21 3.955 16.676 9.633 1.00 0.00 ATOM 372 O ARG 21 5.043 17.013 9.163 1.00 0.00 ATOM 373 N CYS 22 3.557 17.019 10.882 1.00 0.00 ATOM 375 CA CYS 22 4.431 17.720 11.779 1.00 0.00 ATOM 377 CB CYS 22 3.702 18.483 12.904 1.00 0.00 ATOM 380 SG CYS 22 4.840 19.350 14.028 1.00 0.00 ATOM 382 C CYS 22 5.263 16.628 12.383 1.00 0.00 ATOM 383 O CYS 22 4.741 15.734 13.060 1.00 0.00 ATOM 384 N ASP 23 6.588 16.673 12.109 1.00 0.00 ATOM 386 CA ASP 23 7.496 15.688 12.619 1.00 0.00 ATOM 388 CB ASP 23 8.806 15.598 11.800 1.00 0.00 ATOM 391 CG ASP 23 9.732 14.447 12.223 1.00 0.00 ATOM 392 OD1 ASP 23 9.459 13.703 13.204 1.00 0.00 ATOM 393 OD2 ASP 23 10.757 14.296 11.512 1.00 0.00 ATOM 394 C ASP 23 7.765 16.143 14.020 1.00 0.00 ATOM 395 O ASP 23 8.215 17.266 14.244 1.00 0.00 ATOM 396 N GLU 24 7.492 15.244 14.984 1.00 0.00 ATOM 398 CA GLU 24 7.655 15.510 16.387 1.00 0.00 ATOM 400 CB GLU 24 7.004 14.444 17.282 1.00 0.00 ATOM 403 CG GLU 24 5.469 14.485 17.246 1.00 0.00 ATOM 406 CD GLU 24 4.837 13.354 18.065 1.00 0.00 ATOM 407 OE1 GLU 24 5.547 12.467 18.609 1.00 0.00 ATOM 408 OE2 GLU 24 3.583 13.372 18.157 1.00 0.00 ATOM 409 C GLU 24 9.082 15.663 16.799 1.00 0.00 ATOM 410 O GLU 24 9.370 16.510 17.644 1.00 0.00 ATOM 411 N SER 25 10.005 14.876 16.199 1.00 0.00 ATOM 413 CA SER 25 11.407 14.937 16.536 1.00 0.00 ATOM 415 CB SER 25 12.205 13.796 15.865 1.00 0.00 ATOM 418 OG SER 25 12.187 13.906 14.445 1.00 0.00 ATOM 420 C SER 25 12.003 16.263 16.137 1.00 0.00 ATOM 421 O SER 25 12.715 16.902 16.912 1.00 0.00 ATOM 422 N ASN 26 11.668 16.704 14.909 1.00 0.00 ATOM 424 CA ASN 26 12.129 17.936 14.332 1.00 0.00 ATOM 426 CB ASN 26 11.988 17.949 12.796 1.00 0.00 ATOM 429 CG ASN 26 12.991 16.992 12.145 1.00 0.00 ATOM 430 OD1 ASN 26 14.056 16.647 12.660 1.00 0.00 ATOM 431 ND2 ASN 26 12.611 16.513 10.935 1.00 0.00 ATOM 434 C ASN 26 11.406 19.148 14.843 1.00 0.00 ATOM 435 O ASN 26 11.997 20.228 14.900 1.00 0.00 ATOM 436 N HIS 27 10.116 18.981 15.247 1.00 0.00 ATOM 438 CA HIS 27 9.220 20.033 15.689 1.00 0.00 ATOM 440 CB HIS 27 9.653 20.767 16.983 1.00 0.00 ATOM 443 CG HIS 27 9.691 19.907 18.206 1.00 0.00 ATOM 444 ND1 HIS 27 10.809 19.255 18.676 1.00 0.00 ATOM 445 CE1 HIS 27 10.443 18.638 19.830 1.00 0.00 ATOM 447 NE2 HIS 27 9.176 18.850 20.131 1.00 0.00 ATOM 449 CD2 HIS 27 8.703 19.646 19.105 1.00 0.00 ATOM 451 C HIS 27 8.990 21.008 14.557 1.00 0.00 ATOM 452 O HIS 27 8.822 22.215 14.754 1.00 0.00 ATOM 453 N CYS 28 8.960 20.456 13.322 1.00 0.00 ATOM 455 CA CYS 28 8.760 21.206 12.110 1.00 0.00 ATOM 457 CB CYS 28 10.050 21.384 11.284 1.00 0.00 ATOM 460 SG CYS 28 11.329 22.348 12.144 1.00 0.00 ATOM 462 C CYS 28 7.812 20.444 11.235 1.00 0.00 ATOM 463 O CYS 28 7.816 19.210 11.230 1.00 0.00 ATOM 464 N VAL 29 6.954 21.179 10.484 1.00 0.00 ATOM 466 CA VAL 29 6.007 20.568 9.581 1.00 0.00 ATOM 468 CB VAL 29 4.830 21.467 9.248 1.00 0.00 ATOM 470 CG1 VAL 29 3.889 20.780 8.244 1.00 0.00 ATOM 474 CG2 VAL 29 4.108 21.846 10.555 1.00 0.00 ATOM 478 C VAL 29 6.818 20.250 8.350 1.00 0.00 ATOM 479 O VAL 29 7.373 21.149 7.708 1.00 0.00 ATOM 480 N GLU 30 6.901 18.943 8.012 1.00 0.00 ATOM 482 CA GLU 30 7.670 18.500 6.880 1.00 0.00 ATOM 484 CB GLU 30 9.026 17.859 7.264 1.00 0.00 ATOM 487 CG GLU 30 10.023 18.800 7.958 1.00 0.00 ATOM 490 CD GLU 30 11.346 18.112 8.304 1.00 0.00 ATOM 491 OE1 GLU 30 11.535 16.892 8.045 1.00 0.00 ATOM 492 OE2 GLU 30 12.207 18.833 8.870 1.00 0.00 ATOM 493 C GLU 30 6.948 17.458 6.082 1.00 0.00 ATOM 494 O GLU 30 6.079 16.741 6.585 1.00 0.00 ATOM 495 N VAL 31 7.293 17.399 4.773 1.00 0.00 ATOM 497 CA VAL 31 6.748 16.422 3.865 1.00 0.00 ATOM 499 CB VAL 31 6.684 16.892 2.419 1.00 0.00 ATOM 501 CG1 VAL 31 6.102 15.774 1.531 1.00 0.00 ATOM 505 CG2 VAL 31 5.932 18.231 2.328 1.00 0.00 ATOM 509 C VAL 31 7.815 15.363 3.981 1.00 0.00 ATOM 510 O VAL 31 8.964 15.597 3.590 1.00 0.00 ATOM 511 N ARG 32 7.467 14.186 4.545 1.00 0.00 ATOM 513 CA ARG 32 8.446 13.144 4.712 1.00 0.00 ATOM 515 CB ARG 32 8.090 12.144 5.812 1.00 0.00 ATOM 518 CG ARG 32 8.163 12.686 7.236 1.00 0.00 ATOM 521 CD ARG 32 7.563 11.682 8.207 1.00 0.00 ATOM 524 NE ARG 32 7.762 12.144 9.609 1.00 0.00 ATOM 526 CZ ARG 32 7.198 11.455 10.649 1.00 0.00 ATOM 527 NH1 ARG 32 7.459 11.839 11.932 1.00 0.00 ATOM 530 NH2 ARG 32 6.367 10.386 10.433 1.00 0.00 ATOM 533 C ARG 32 8.746 12.389 3.452 1.00 0.00 ATOM 534 O ARG 32 9.918 12.168 3.156 1.00 0.00 ATOM 535 N CYS 33 7.709 11.979 2.682 1.00 0.00 ATOM 537 CA CYS 33 7.934 11.253 1.455 1.00 0.00 ATOM 539 CB CYS 33 7.349 9.825 1.449 1.00 0.00 ATOM 542 SG CYS 33 7.667 8.898 -0.084 1.00 0.00 ATOM 544 C CYS 33 7.364 12.046 0.317 1.00 0.00 ATOM 545 O CYS 33 6.283 12.625 0.423 1.00 0.00 ATOM 546 N SER 34 8.134 12.128 -0.788 1.00 0.00 ATOM 548 CA SER 34 7.739 12.866 -1.956 1.00 0.00 ATOM 550 CB SER 34 8.964 13.401 -2.722 1.00 0.00 ATOM 553 OG SER 34 9.724 14.265 -1.886 1.00 0.00 ATOM 555 C SER 34 6.875 12.118 -2.935 1.00 0.00 ATOM 556 O SER 34 5.843 12.639 -3.360 1.00 0.00 ATOM 557 N ASP 35 7.256 10.863 -3.276 1.00 0.00 ATOM 559 CA ASP 35 6.574 10.042 -4.253 1.00 0.00 ATOM 561 CB ASP 35 7.324 8.728 -4.579 1.00 0.00 ATOM 564 CG ASP 35 8.579 8.965 -5.422 1.00 0.00 ATOM 565 OD1 ASP 35 8.815 10.091 -5.934 1.00 0.00 ATOM 566 OD2 ASP 35 9.335 7.970 -5.571 1.00 0.00 ATOM 567 C ASP 35 5.174 9.646 -3.917 1.00 0.00 ATOM 568 O ASP 35 4.891 9.211 -2.803 1.00 0.00 ATOM 569 N THR 36 4.266 9.800 -4.914 1.00 0.00 ATOM 571 CA THR 36 2.876 9.445 -4.781 1.00 0.00 ATOM 573 CB THR 36 2.012 10.056 -5.864 1.00 0.00 ATOM 575 CG2 THR 36 0.527 9.703 -5.627 1.00 0.00 ATOM 579 OG1 THR 36 2.150 11.470 -5.832 1.00 0.00 ATOM 581 C THR 36 2.812 7.937 -4.833 1.00 0.00 ATOM 582 O THR 36 3.308 7.302 -5.769 1.00 0.00 ATOM 583 N LYS 37 2.203 7.355 -3.778 1.00 0.00 ATOM 585 CA LYS 37 2.053 5.931 -3.621 1.00 0.00 ATOM 587 CB LYS 37 2.229 5.469 -2.149 1.00 0.00 ATOM 590 CG LYS 37 3.597 5.875 -1.573 1.00 0.00 ATOM 593 CD LYS 37 4.804 5.298 -2.321 1.00 0.00 ATOM 596 CE LYS 37 6.160 5.672 -1.724 1.00 0.00 ATOM 599 NZ LYS 37 7.241 5.136 -2.578 1.00 0.00 ATOM 603 C LYS 37 0.762 5.436 -4.223 1.00 0.00 ATOM 604 O LYS 37 -0.024 6.221 -4.759 1.00 0.00 ATOM 605 N TYR 38 0.539 4.094 -4.172 1.00 0.00 ATOM 607 CA TYR 38 -0.638 3.457 -4.721 1.00 0.00 ATOM 609 CB TYR 38 -0.545 1.889 -4.745 1.00 0.00 ATOM 612 CG TYR 38 -0.879 1.185 -3.457 1.00 0.00 ATOM 613 CD1 TYR 38 -2.180 0.692 -3.268 1.00 0.00 ATOM 615 CE1 TYR 38 -2.547 0.050 -2.085 1.00 0.00 ATOM 617 CZ TYR 38 -1.609 -0.106 -1.067 1.00 0.00 ATOM 618 OH TYR 38 -1.972 -0.749 0.134 1.00 0.00 ATOM 620 CE2 TYR 38 -0.314 0.381 -1.244 1.00 0.00 ATOM 622 CD2 TYR 38 0.055 1.024 -2.430 1.00 0.00 ATOM 624 C TYR 38 -1.896 3.897 -4.003 1.00 0.00 ATOM 625 O TYR 38 -2.961 3.965 -4.612 1.00 0.00 ATOM 626 N THR 39 -1.796 4.182 -2.681 1.00 0.00 ATOM 628 CA THR 39 -2.904 4.601 -1.855 1.00 0.00 ATOM 630 CB THR 39 -2.544 4.563 -0.382 1.00 0.00 ATOM 632 CG2 THR 39 -3.747 4.944 0.506 1.00 0.00 ATOM 636 OG1 THR 39 -2.150 3.240 -0.040 1.00 0.00 ATOM 638 C THR 39 -3.402 5.956 -2.305 1.00 0.00 ATOM 639 O THR 39 -2.627 6.832 -2.693 1.00 0.00 ATOM 640 N LEU 40 -4.748 6.115 -2.278 1.00 0.00 ATOM 642 CA LEU 40 -5.445 7.307 -2.688 1.00 0.00 ATOM 644 CB LEU 40 -6.982 7.175 -2.619 1.00 0.00 ATOM 647 CG LEU 40 -7.610 6.180 -3.617 1.00 0.00 ATOM 649 CD1 LEU 40 -9.115 6.030 -3.352 1.00 0.00 ATOM 653 CD2 LEU 40 -7.305 6.549 -5.080 1.00 0.00 ATOM 657 C LEU 40 -5.068 8.502 -1.871 1.00 0.00 ATOM 658 O LEU 40 -4.952 8.430 -0.645 1.00 0.00 ATOM 659 N CYS 41 -4.849 9.627 -2.584 1.00 0.00 ATOM 661 CA CYS 41 -4.472 10.880 -1.998 1.00 0.00 ATOM 663 CB CYS 41 -3.489 11.671 -2.882 1.00 0.00 ATOM 666 SG CYS 41 -2.117 10.646 -3.489 1.00 0.00 ATOM 668 C CYS 41 -5.723 11.741 -1.771 1.00 0.00 ATOM 669 O CYS 41 -6.807 11.425 -2.333 1.00 0.00 ATOM 670 OXT CYS 41 -5.611 12.740 -1.014 1.00 0.00 TER END