####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS085_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 3 - 29 4.93 9.99 LONGEST_CONTINUOUS_SEGMENT: 27 15 - 41 4.69 12.31 LCS_AVERAGE: 65.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 1.90 8.96 LCS_AVERAGE: 32.06 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.69 9.04 LCS_AVERAGE: 20.58 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 19 24 3 3 4 4 14 22 22 23 25 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT Q 2 Q 2 15 19 26 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT E 3 E 3 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT T 4 T 4 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT R 5 R 5 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 6 K 6 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 7 K 7 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT C 8 C 8 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT T 9 T 9 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT E 10 E 10 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT M 11 M 11 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 12 K 12 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 13 K 13 15 19 27 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 14 K 14 15 19 27 3 13 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT F 15 F 15 15 19 27 3 8 15 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT K 16 K 16 15 19 27 8 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT N 17 N 17 4 19 27 3 3 4 8 15 19 22 23 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT C 18 C 18 5 19 27 2 5 14 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT E 19 E 19 5 19 27 2 5 5 11 13 17 20 22 23 25 25 26 27 28 29 32 33 34 34 34 LCS_GDT V 20 V 20 5 7 27 3 5 5 7 12 14 20 20 22 25 25 26 27 27 29 32 33 34 34 34 LCS_GDT R 21 R 21 5 7 27 3 5 5 7 12 16 20 20 21 22 23 25 25 26 27 28 29 30 31 33 LCS_GDT C 22 C 22 5 7 27 3 5 5 7 12 16 20 20 21 22 23 23 25 25 27 28 29 30 31 33 LCS_GDT D 23 D 23 3 7 27 3 3 5 8 12 16 20 20 21 22 23 23 25 25 26 28 29 30 31 33 LCS_GDT E 24 E 24 3 9 27 3 4 7 9 12 16 20 20 21 22 23 23 25 25 26 28 29 30 31 33 LCS_GDT S 25 S 25 3 9 27 3 4 7 9 12 16 20 20 21 22 23 23 25 25 26 28 29 30 31 33 LCS_GDT N 26 N 26 3 9 27 3 3 4 7 10 14 20 20 21 22 23 24 25 26 27 28 29 31 34 34 LCS_GDT H 27 H 27 3 9 27 3 3 7 9 12 16 20 20 21 22 23 25 25 28 29 30 31 34 34 34 LCS_GDT C 28 C 28 6 9 27 4 6 7 9 12 16 20 20 22 25 25 26 28 28 29 32 33 34 34 34 LCS_GDT V 29 V 29 6 9 27 4 6 7 9 12 16 20 21 23 25 26 26 29 29 30 32 33 34 34 34 LCS_GDT E 30 E 30 6 9 27 4 6 8 11 15 19 22 22 24 25 26 27 29 29 30 32 33 34 34 34 LCS_GDT V 31 V 31 6 9 27 4 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT R 32 R 32 6 9 27 3 8 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT C 33 C 33 6 9 27 3 6 7 10 18 20 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT S 34 S 34 5 9 27 3 4 7 9 12 18 20 22 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT D 35 D 35 4 9 27 3 3 4 8 11 12 19 22 23 26 28 28 29 29 30 31 33 34 34 34 LCS_GDT T 36 T 36 4 7 27 3 4 7 9 12 16 20 20 21 22 23 28 29 29 29 29 31 32 33 34 LCS_GDT K 37 K 37 5 7 27 0 4 7 10 14 20 21 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT Y 38 Y 38 5 7 27 3 4 5 9 14 20 21 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT T 39 T 39 5 7 27 3 6 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT L 40 L 40 5 7 27 3 3 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_GDT C 41 C 41 5 7 27 2 7 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 LCS_AVERAGE LCS_A: 39.42 ( 20.58 32.06 65.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 14 16 18 21 22 22 24 26 26 28 28 29 29 30 32 33 34 34 34 GDT PERCENT_AT 29.27 34.15 39.02 43.90 51.22 53.66 53.66 58.54 63.41 63.41 68.29 68.29 70.73 70.73 73.17 78.05 80.49 82.93 82.93 82.93 GDT RMS_LOCAL 0.25 0.50 0.80 1.01 1.43 1.55 1.55 2.19 2.57 2.45 2.86 2.86 3.18 3.28 3.49 4.16 4.38 4.83 4.83 4.66 GDT RMS_ALL_AT 8.94 8.91 8.95 8.93 9.18 9.20 9.20 9.51 9.61 9.59 9.73 9.73 9.88 9.24 9.31 8.89 8.93 8.57 8.57 9.02 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.234 0 0.596 0.749 5.592 6.818 4.545 5.387 LGA Q 2 Q 2 0.857 0 0.230 1.013 3.589 77.727 65.859 2.083 LGA E 3 E 3 0.889 0 0.084 1.167 7.219 81.818 45.051 4.792 LGA T 4 T 4 1.212 0 0.026 1.106 3.988 69.545 50.130 3.983 LGA R 5 R 5 1.486 0 0.024 0.779 3.036 61.818 47.603 3.036 LGA K 6 K 6 1.202 0 0.068 0.633 5.651 73.636 42.020 5.651 LGA K 7 K 7 0.811 0 0.050 0.638 3.751 82.273 50.303 3.751 LGA C 8 C 8 1.119 0 0.059 0.753 4.404 77.727 61.212 4.404 LGA T 9 T 9 1.478 0 0.042 1.112 4.135 65.455 55.325 0.958 LGA E 10 E 10 1.219 0 0.072 0.645 5.010 73.636 40.404 4.550 LGA M 11 M 11 0.643 0 0.106 0.609 1.954 90.909 72.727 1.627 LGA K 12 K 12 1.122 0 0.055 0.628 5.178 69.545 45.455 5.178 LGA K 13 K 13 1.376 0 0.083 0.570 3.383 65.455 49.697 1.832 LGA K 14 K 14 0.876 0 0.064 0.610 1.473 73.636 74.545 1.376 LGA F 15 F 15 1.594 0 0.382 0.383 4.929 58.636 31.240 4.929 LGA K 16 K 16 1.303 0 0.076 0.903 3.767 42.273 41.010 2.943 LGA N 17 N 17 5.468 0 0.039 0.175 8.135 2.727 1.364 8.135 LGA C 18 C 18 3.602 0 0.656 1.154 5.299 4.091 10.909 2.418 LGA E 19 E 19 9.213 0 0.085 0.894 13.619 0.000 0.000 11.968 LGA V 20 V 20 9.929 0 0.163 0.155 12.065 0.000 0.000 9.015 LGA R 21 R 21 15.234 0 0.302 1.212 24.317 0.000 0.000 23.789 LGA C 22 C 22 17.494 0 0.099 0.176 19.793 0.000 0.000 19.247 LGA D 23 D 23 21.891 0 0.718 0.862 24.098 0.000 0.000 22.284 LGA E 24 E 24 24.560 0 0.391 1.152 31.541 0.000 0.000 30.384 LGA S 25 S 25 25.611 0 0.417 0.682 26.000 0.000 0.000 26.000 LGA N 26 N 26 20.693 0 0.108 1.141 23.135 0.000 0.000 22.183 LGA H 27 H 27 15.099 0 0.405 1.202 17.858 0.000 0.000 17.365 LGA C 28 C 28 11.517 0 0.092 0.113 12.773 0.000 0.000 12.773 LGA V 29 V 29 8.486 0 0.101 1.091 9.709 0.000 0.000 9.090 LGA E 30 E 30 7.664 0 0.197 0.741 11.878 0.000 0.000 11.878 LGA V 31 V 31 3.397 0 0.063 0.113 4.965 10.909 30.130 1.548 LGA R 32 R 32 2.809 0 0.211 1.225 14.006 27.727 11.074 12.582 LGA C 33 C 33 3.375 0 0.149 0.183 5.334 15.455 12.121 4.335 LGA S 34 S 34 5.624 0 0.360 0.770 6.190 1.364 1.818 4.274 LGA D 35 D 35 6.859 0 0.109 1.026 8.378 0.000 0.000 6.212 LGA T 36 T 36 9.426 0 0.474 0.921 13.207 0.000 0.000 13.207 LGA K 37 K 37 4.338 0 0.602 1.592 5.993 2.727 16.162 5.329 LGA Y 38 Y 38 4.413 0 0.463 1.090 8.495 17.727 5.909 8.495 LGA T 39 T 39 0.855 0 0.107 0.091 3.257 56.364 49.351 1.796 LGA L 40 L 40 1.360 0 0.045 1.023 4.500 65.455 42.500 4.500 LGA C 41 C 41 3.188 0 0.380 1.228 5.533 16.818 14.805 5.291 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 7.602 7.561 8.157 31.519 23.738 12.639 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 24 2.19 53.659 49.597 1.046 LGA_LOCAL RMSD: 2.195 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.513 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 7.602 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.238793 * X + -0.969703 * Y + -0.051517 * Z + -10.138567 Y_new = -0.681952 * X + 0.205229 * Y + -0.702013 * Z + 10.974658 Z_new = 0.691317 * X + -0.132504 * Y + -0.710298 * Z + -21.717281 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.907615 -0.763310 -2.957166 [DEG: -109.2983 -43.7345 -169.4331 ] ZXZ: -0.073254 2.360718 1.760168 [DEG: -4.1971 135.2592 100.8502 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS085_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 24 2.19 49.597 7.60 REMARK ---------------------------------------------------------- MOLECULE T0955TS085_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -1.106 -12.817 -2.317 1.00 0.00 ATOM 5 CA SER 1 -2.035 -11.728 -2.033 1.00 0.00 ATOM 7 CB SER 1 -3.475 -12.246 -2.016 1.00 0.00 ATOM 10 OG SER 1 -3.721 -12.960 -0.814 1.00 0.00 ATOM 12 C SER 1 -1.708 -11.062 -0.701 1.00 0.00 ATOM 13 O SER 1 -1.600 -9.839 -0.632 1.00 0.00 ATOM 15 N GLN 2 -1.551 -11.985 0.360 1.00 0.00 ATOM 17 CA GLN 2 -1.202 -11.386 1.566 1.00 0.00 ATOM 19 CB GLN 2 -1.304 -12.508 2.601 1.00 0.00 ATOM 22 CG GLN 2 -0.985 -12.005 4.009 1.00 0.00 ATOM 25 CD GLN 2 -2.029 -10.999 4.481 1.00 0.00 ATOM 26 OE1 GLN 2 -3.217 -11.287 4.499 1.00 0.00 ATOM 27 NE2 GLN 2 -1.610 -9.814 4.871 1.00 0.00 ATOM 30 C GLN 2 0.034 -10.694 1.716 1.00 0.00 ATOM 31 O GLN 2 0.091 -9.680 2.407 1.00 0.00 ATOM 32 N GLU 3 1.137 -11.238 1.031 1.00 0.00 ATOM 34 CA GLU 3 2.343 -10.532 1.007 1.00 0.00 ATOM 36 CB GLU 3 3.409 -11.351 0.273 1.00 0.00 ATOM 39 CG GLU 3 4.768 -10.651 0.300 1.00 0.00 ATOM 42 CD GLU 3 5.830 -11.492 -0.402 1.00 0.00 ATOM 43 OE1 GLU 3 6.978 -11.045 -0.465 1.00 0.00 ATOM 44 OE2 GLU 3 5.484 -12.582 -0.872 1.00 0.00 ATOM 45 C GLU 3 2.203 -9.242 0.393 1.00 0.00 ATOM 46 O GLU 3 2.767 -8.265 0.878 1.00 0.00 ATOM 47 N THR 4 1.379 -9.205 -0.771 1.00 0.00 ATOM 49 CA THR 4 1.186 -7.843 -1.366 1.00 0.00 ATOM 51 CB THR 4 0.375 -7.922 -2.674 1.00 0.00 ATOM 53 CG2 THR 4 0.164 -6.538 -3.281 1.00 0.00 ATOM 57 OG1 THR 4 1.080 -8.728 -3.610 1.00 0.00 ATOM 59 C THR 4 0.474 -6.912 -0.372 1.00 0.00 ATOM 60 O THR 4 0.834 -5.743 -0.256 1.00 0.00 ATOM 61 N ARG 5 -0.579 -7.498 0.367 1.00 0.00 ATOM 63 CA ARG 5 -1.301 -6.642 1.341 1.00 0.00 ATOM 65 CB ARG 5 -2.468 -7.414 1.963 1.00 0.00 ATOM 68 CG ARG 5 -3.616 -7.595 0.971 1.00 0.00 ATOM 71 CD ARG 5 -4.890 -8.036 1.692 1.00 0.00 ATOM 74 NE ARG 5 -4.680 -9.361 2.313 1.00 0.00 ATOM 76 CZ ARG 5 -4.892 -10.489 1.658 1.00 0.00 ATOM 77 NH1 ARG 5 -4.692 -11.649 2.249 1.00 0.00 ATOM 80 NH2 ARG 5 -5.304 -10.452 0.409 1.00 0.00 ATOM 83 C ARG 5 -0.344 -6.137 2.453 1.00 0.00 ATOM 84 O ARG 5 -0.422 -4.977 2.851 1.00 0.00 ATOM 85 N LYS 6 0.570 -7.073 2.930 1.00 0.00 ATOM 87 CA LYS 6 1.545 -6.711 3.944 1.00 0.00 ATOM 89 CB LYS 6 2.260 -7.993 4.380 1.00 0.00 ATOM 92 CG LYS 6 3.321 -7.711 5.445 1.00 0.00 ATOM 95 CD LYS 6 4.015 -9.005 5.873 1.00 0.00 ATOM 98 CE LYS 6 5.083 -8.720 6.928 1.00 0.00 ATOM 101 NZ LYS 6 5.754 -9.986 7.325 1.00 0.00 ATOM 105 C LYS 6 2.498 -5.722 3.565 1.00 0.00 ATOM 106 O LYS 6 2.823 -4.842 4.360 1.00 0.00 ATOM 107 N LYS 7 2.939 -5.921 2.249 1.00 0.00 ATOM 109 CA LYS 7 3.887 -4.972 1.748 1.00 0.00 ATOM 111 CB LYS 7 4.356 -5.378 0.347 1.00 0.00 ATOM 114 CG LYS 7 5.322 -6.563 0.399 1.00 0.00 ATOM 117 CD LYS 7 5.825 -6.912 -1.003 1.00 0.00 ATOM 120 CE LYS 7 6.799 -8.088 -0.949 1.00 0.00 ATOM 123 NZ LYS 7 7.286 -8.405 -2.317 1.00 0.00 ATOM 127 C LYS 7 3.322 -3.633 1.718 1.00 0.00 ATOM 128 O LYS 7 4.017 -2.664 2.015 1.00 0.00 ATOM 129 N CYS 8 1.993 -3.593 1.349 1.00 0.00 ATOM 131 CA CYS 8 1.286 -2.299 1.380 1.00 0.00 ATOM 133 CB CYS 8 -0.125 -2.534 0.839 1.00 0.00 ATOM 136 SG CYS 8 -0.119 -2.896 -0.935 1.00 0.00 ATOM 138 C CYS 8 1.215 -1.616 2.705 1.00 0.00 ATOM 139 O CYS 8 1.428 -0.409 2.788 1.00 0.00 ATOM 140 N THR 9 0.925 -2.365 3.766 1.00 0.00 ATOM 142 CA THR 9 0.856 -1.784 5.172 1.00 0.00 ATOM 144 CB THR 9 0.460 -2.809 6.251 1.00 0.00 ATOM 146 CG2 THR 9 -0.852 -3.507 5.901 1.00 0.00 ATOM 150 OG1 THR 9 1.483 -3.789 6.359 1.00 0.00 ATOM 152 C THR 9 2.333 -1.228 5.469 1.00 0.00 ATOM 153 O THR 9 2.483 -0.160 6.057 1.00 0.00 ATOM 154 N GLU 10 3.463 -1.882 5.095 1.00 0.00 ATOM 156 CA GLU 10 4.772 -1.398 5.206 1.00 0.00 ATOM 158 CB GLU 10 5.684 -2.579 4.859 1.00 0.00 ATOM 161 CG GLU 10 5.585 -3.689 5.906 1.00 0.00 ATOM 164 CD GLU 10 6.391 -4.912 5.483 1.00 0.00 ATOM 165 OE1 GLU 10 6.410 -5.887 6.241 1.00 0.00 ATOM 166 OE2 GLU 10 6.986 -4.865 4.400 1.00 0.00 ATOM 167 C GLU 10 5.157 -0.244 4.456 1.00 0.00 ATOM 168 O GLU 10 5.835 0.636 4.983 1.00 0.00 ATOM 169 N MET 11 4.673 -0.280 3.157 1.00 0.00 ATOM 171 CA MET 11 4.745 0.788 2.283 1.00 0.00 ATOM 173 CB MET 11 4.234 0.450 0.880 1.00 0.00 ATOM 176 CG MET 11 5.213 -0.452 0.131 1.00 0.00 ATOM 179 SD MET 11 6.786 0.385 -0.171 1.00 0.00 ATOM 180 CE MET 11 7.649 -0.947 -1.025 1.00 0.00 ATOM 184 C MET 11 3.914 1.845 2.879 1.00 0.00 ATOM 185 O MET 11 4.286 3.017 2.841 1.00 0.00 ATOM 186 N LYS 12 2.746 1.609 3.484 1.00 0.00 ATOM 188 CA LYS 12 2.057 2.775 4.177 1.00 0.00 ATOM 190 CB LYS 12 0.669 2.366 4.682 1.00 0.00 ATOM 193 CG LYS 12 -0.323 2.206 3.530 1.00 0.00 ATOM 196 CD LYS 12 -1.710 1.836 4.057 1.00 0.00 ATOM 199 CE LYS 12 -2.730 1.807 2.920 1.00 0.00 ATOM 202 NZ LYS 12 -4.073 1.457 3.454 1.00 0.00 ATOM 206 C LYS 12 2.857 3.236 5.262 1.00 0.00 ATOM 207 O LYS 12 2.895 4.434 5.532 1.00 0.00 ATOM 208 N LYS 13 3.572 2.446 5.995 1.00 0.00 ATOM 210 CA LYS 13 4.478 2.948 6.913 1.00 0.00 ATOM 212 CB LYS 13 5.211 1.880 7.730 1.00 0.00 ATOM 215 CG LYS 13 4.261 1.145 8.675 1.00 0.00 ATOM 218 CD LYS 13 5.010 0.076 9.472 1.00 0.00 ATOM 221 CE LYS 13 4.061 -0.649 10.426 1.00 0.00 ATOM 224 NZ LYS 13 4.808 -1.676 11.201 1.00 0.00 ATOM 228 C LYS 13 5.493 3.729 6.008 1.00 0.00 ATOM 229 O LYS 13 5.810 4.882 6.292 1.00 0.00 ATOM 230 N LYS 14 6.005 3.176 4.956 1.00 0.00 ATOM 232 CA LYS 14 6.608 4.135 3.978 1.00 0.00 ATOM 234 CB LYS 14 7.406 3.293 2.976 1.00 0.00 ATOM 237 CG LYS 14 8.634 2.657 3.628 1.00 0.00 ATOM 240 CD LYS 14 9.407 1.813 2.616 1.00 0.00 ATOM 243 CE LYS 14 10.641 1.188 3.265 1.00 0.00 ATOM 246 NZ LYS 14 11.388 0.381 2.264 1.00 0.00 ATOM 250 C LYS 14 5.722 5.025 3.281 1.00 0.00 ATOM 251 O LYS 14 6.027 6.207 3.133 1.00 0.00 ATOM 252 N PHE 15 4.488 4.526 2.773 1.00 0.00 ATOM 254 CA PHE 15 3.733 5.494 2.024 1.00 0.00 ATOM 256 CB PHE 15 2.450 4.945 1.391 1.00 0.00 ATOM 259 CG PHE 15 2.734 3.842 0.397 1.00 0.00 ATOM 260 CD1 PHE 15 1.775 2.867 0.134 1.00 0.00 ATOM 262 CE1 PHE 15 2.039 1.851 -0.783 1.00 0.00 ATOM 264 CZ PHE 15 3.263 1.807 -1.439 1.00 0.00 ATOM 266 CE2 PHE 15 4.224 2.777 -1.181 1.00 0.00 ATOM 268 CD2 PHE 15 3.960 3.793 -0.264 1.00 0.00 ATOM 270 C PHE 15 3.373 6.589 3.117 1.00 0.00 ATOM 271 O PHE 15 3.151 7.749 2.778 1.00 0.00 ATOM 272 N LYS 16 3.340 6.152 4.399 1.00 0.00 ATOM 274 CA LYS 16 3.189 7.191 5.301 1.00 0.00 ATOM 276 CB LYS 16 2.772 6.562 6.635 1.00 0.00 ATOM 279 CG LYS 16 2.490 7.629 7.695 1.00 0.00 ATOM 282 CD LYS 16 2.065 6.982 9.013 1.00 0.00 ATOM 285 CE LYS 16 1.796 8.047 10.074 1.00 0.00 ATOM 288 NZ LYS 16 1.394 7.400 11.352 1.00 0.00 ATOM 292 C LYS 16 4.303 8.058 5.494 1.00 0.00 ATOM 293 O LYS 16 4.144 9.158 6.020 1.00 0.00 ATOM 294 N ASN 17 5.470 7.706 5.117 1.00 0.00 ATOM 296 CA ASN 17 6.510 8.709 4.656 1.00 0.00 ATOM 298 CB ASN 17 7.804 8.014 4.220 1.00 0.00 ATOM 301 CG ASN 17 8.510 7.366 5.406 1.00 0.00 ATOM 302 OD1 ASN 17 8.971 8.046 6.312 1.00 0.00 ATOM 303 ND2 ASN 17 8.606 6.053 5.418 1.00 0.00 ATOM 306 C ASN 17 5.908 9.582 3.435 1.00 0.00 ATOM 307 O ASN 17 6.258 10.751 3.283 1.00 0.00 ATOM 308 N CYS 18 5.009 8.835 2.682 1.00 0.00 ATOM 310 CA CYS 18 3.648 9.199 2.086 1.00 0.00 ATOM 312 CB CYS 18 3.173 10.579 2.544 1.00 0.00 ATOM 315 SG CYS 18 1.475 10.920 2.018 1.00 0.00 ATOM 317 C CYS 18 3.779 9.174 0.634 1.00 0.00 ATOM 318 O CYS 18 2.793 9.353 -0.078 1.00 0.00 ATOM 319 N GLU 19 5.127 8.923 0.248 1.00 0.00 ATOM 321 CA GLU 19 5.440 9.046 -1.092 1.00 0.00 ATOM 323 CB GLU 19 5.821 10.507 -1.344 1.00 0.00 ATOM 326 CG GLU 19 6.197 10.743 -2.807 1.00 0.00 ATOM 329 CD GLU 19 4.980 10.604 -3.715 1.00 0.00 ATOM 330 OE1 GLU 19 3.942 11.187 -3.388 1.00 0.00 ATOM 331 OE2 GLU 19 5.095 9.913 -4.733 1.00 0.00 ATOM 332 C GLU 19 6.472 8.173 -1.588 1.00 0.00 ATOM 333 O GLU 19 7.655 8.468 -1.432 1.00 0.00 ATOM 334 N VAL 20 6.097 7.127 -2.176 1.00 0.00 ATOM 336 CA VAL 20 7.200 6.062 -2.220 1.00 0.00 ATOM 338 CB VAL 20 6.966 4.813 -1.341 1.00 0.00 ATOM 340 CG1 VAL 20 8.036 3.756 -1.614 1.00 0.00 ATOM 344 CG2 VAL 20 7.023 5.187 0.140 1.00 0.00 ATOM 348 C VAL 20 7.177 5.696 -3.616 1.00 0.00 ATOM 349 O VAL 20 6.108 5.451 -4.170 1.00 0.00 ATOM 350 N ARG 21 8.484 5.666 -4.175 1.00 0.00 ATOM 352 CA ARG 21 8.529 5.299 -5.541 1.00 0.00 ATOM 354 CB ARG 21 8.413 6.596 -6.344 1.00 0.00 ATOM 357 CG ARG 21 9.601 7.524 -6.090 1.00 0.00 ATOM 360 CD ARG 21 9.471 8.807 -6.910 1.00 0.00 ATOM 363 NE ARG 21 10.623 9.693 -6.639 1.00 0.00 ATOM 365 CZ ARG 21 11.797 9.521 -7.218 1.00 0.00 ATOM 366 NH1 ARG 21 12.799 10.333 -6.949 1.00 0.00 ATOM 369 NH2 ARG 21 11.968 8.530 -8.068 1.00 0.00 ATOM 372 C ARG 21 9.648 4.542 -5.995 1.00 0.00 ATOM 373 O ARG 21 10.457 5.043 -6.773 1.00 0.00 ATOM 374 N CYS 22 9.746 3.348 -5.558 1.00 0.00 ATOM 376 CA CYS 22 10.936 2.503 -5.514 1.00 0.00 ATOM 378 CB CYS 22 11.741 2.585 -6.812 1.00 0.00 ATOM 381 SG CYS 22 10.704 2.323 -8.271 1.00 0.00 ATOM 383 C CYS 22 11.839 2.984 -4.279 1.00 0.00 ATOM 384 O CYS 22 11.523 3.983 -3.637 1.00 0.00 ATOM 385 N ASP 23 12.904 2.288 -3.992 1.00 0.00 ATOM 387 CA ASP 23 14.200 2.995 -3.635 1.00 0.00 ATOM 389 CB ASP 23 15.013 2.117 -2.679 1.00 0.00 ATOM 392 CG ASP 23 14.376 2.067 -1.294 1.00 0.00 ATOM 393 OD1 ASP 23 14.662 1.118 -0.556 1.00 0.00 ATOM 394 OD2 ASP 23 13.491 3.296 -1.184 1.00 0.00 ATOM 395 C ASP 23 15.093 3.374 -4.939 1.00 0.00 ATOM 396 O ASP 23 16.132 4.017 -4.809 1.00 0.00 ATOM 397 N GLU 24 14.669 2.968 -6.238 1.00 0.00 ATOM 399 CA GLU 24 15.179 1.833 -7.120 1.00 0.00 ATOM 401 CB GLU 24 16.674 1.993 -7.407 1.00 0.00 ATOM 404 CG GLU 24 16.928 3.049 -8.484 1.00 0.00 ATOM 407 CD GLU 24 16.516 2.535 -9.860 1.00 0.00 ATOM 408 OE1 GLU 24 15.311 2.433 -10.105 1.00 0.00 ATOM 409 OE2 GLU 24 17.413 2.247 -10.660 1.00 0.00 ATOM 410 C GLU 24 14.929 0.556 -6.481 1.00 0.00 ATOM 411 O GLU 24 13.798 0.078 -6.483 1.00 0.00 ATOM 412 N SER 25 15.838 -0.122 -5.890 1.00 0.00 ATOM 414 CA SER 25 15.889 -1.487 -5.597 1.00 0.00 ATOM 416 CB SER 25 14.710 -2.004 -4.770 1.00 0.00 ATOM 419 OG SER 25 14.865 -3.394 -4.519 1.00 0.00 ATOM 421 C SER 25 15.874 -2.130 -6.978 1.00 0.00 ATOM 422 O SER 25 16.761 -1.870 -7.787 1.00 0.00 ATOM 423 N ASN 26 14.952 -2.959 -7.372 1.00 0.00 ATOM 425 CA ASN 26 14.175 -2.560 -8.629 1.00 0.00 ATOM 427 CB ASN 26 14.276 -3.776 -9.553 1.00 0.00 ATOM 430 CG ASN 26 15.698 -3.958 -10.074 1.00 0.00 ATOM 431 OD1 ASN 26 16.125 -3.270 -10.989 1.00 0.00 ATOM 432 ND2 ASN 26 16.445 -4.881 -9.504 1.00 0.00 ATOM 435 C ASN 26 12.825 -2.107 -8.558 1.00 0.00 ATOM 436 O ASN 26 12.261 -1.688 -9.567 1.00 0.00 ATOM 437 N HIS 27 12.311 -2.214 -7.234 1.00 0.00 ATOM 439 CA HIS 27 10.934 -2.502 -7.212 1.00 0.00 ATOM 441 CB HIS 27 10.697 -3.182 -5.861 1.00 0.00 ATOM 444 CG HIS 27 11.444 -4.476 -5.708 1.00 0.00 ATOM 445 ND1 HIS 27 12.791 -4.540 -5.426 1.00 0.00 ATOM 446 CE1 HIS 27 13.155 -5.814 -5.354 1.00 0.00 ATOM 448 NE2 HIS 27 12.093 -6.577 -5.578 1.00 0.00 ATOM 450 CD2 HIS 27 11.015 -5.761 -5.801 1.00 0.00 ATOM 452 C HIS 27 9.833 -1.340 -7.449 1.00 0.00 ATOM 453 O HIS 27 9.829 -0.340 -6.736 1.00 0.00 ATOM 454 N CYS 28 8.847 -1.403 -8.443 1.00 0.00 ATOM 456 CA CYS 28 8.278 -0.186 -8.964 1.00 0.00 ATOM 458 CB CYS 28 8.102 -0.354 -10.474 1.00 0.00 ATOM 461 SG CYS 28 9.691 -0.396 -11.342 1.00 0.00 ATOM 463 C CYS 28 6.981 0.228 -8.341 1.00 0.00 ATOM 464 O CYS 28 5.958 -0.417 -8.562 1.00 0.00 ATOM 465 N VAL 29 6.861 1.272 -7.553 1.00 0.00 ATOM 467 CA VAL 29 6.005 1.015 -6.303 1.00 0.00 ATOM 469 CB VAL 29 6.650 0.140 -5.205 1.00 0.00 ATOM 471 CG1 VAL 29 7.889 0.826 -4.631 1.00 0.00 ATOM 475 CG2 VAL 29 5.659 -0.102 -4.067 1.00 0.00 ATOM 479 C VAL 29 5.832 2.349 -5.827 1.00 0.00 ATOM 480 O VAL 29 6.679 2.856 -5.095 1.00 0.00 ATOM 481 N GLU 30 4.620 2.909 -6.307 1.00 0.00 ATOM 483 CA GLU 30 4.453 4.334 -6.645 1.00 0.00 ATOM 485 CB GLU 30 4.346 4.656 -8.138 1.00 0.00 ATOM 488 CG GLU 30 4.262 6.163 -8.381 1.00 0.00 ATOM 491 CD GLU 30 4.218 6.475 -9.872 1.00 0.00 ATOM 492 OE1 GLU 30 4.141 7.657 -10.219 1.00 0.00 ATOM 493 OE2 GLU 30 4.263 5.524 -10.662 1.00 0.00 ATOM 494 C GLU 30 3.212 4.612 -5.992 1.00 0.00 ATOM 495 O GLU 30 2.149 4.360 -6.556 1.00 0.00 ATOM 496 N VAL 31 3.334 5.118 -4.849 1.00 0.00 ATOM 498 CA VAL 31 2.122 5.356 -4.228 1.00 0.00 ATOM 500 CB VAL 31 1.815 4.306 -3.137 1.00 0.00 ATOM 502 CG1 VAL 31 0.533 4.670 -2.390 1.00 0.00 ATOM 506 CG2 VAL 31 1.634 2.925 -3.765 1.00 0.00 ATOM 510 C VAL 31 2.153 6.670 -3.652 1.00 0.00 ATOM 511 O VAL 31 3.181 7.089 -3.126 1.00 0.00 ATOM 512 N ARG 32 0.926 7.300 -3.784 1.00 0.00 ATOM 514 CA ARG 32 0.427 8.369 -3.053 1.00 0.00 ATOM 516 CB ARG 32 -0.361 9.286 -3.991 1.00 0.00 ATOM 519 CG ARG 32 0.535 10.355 -4.618 1.00 0.00 ATOM 522 CD ARG 32 1.585 9.717 -5.527 1.00 0.00 ATOM 525 NE ARG 32 2.430 10.768 -6.129 1.00 0.00 ATOM 527 CZ ARG 32 3.310 10.509 -7.081 1.00 0.00 ATOM 528 NH1 ARG 32 4.044 11.476 -7.591 1.00 0.00 ATOM 531 NH2 ARG 32 3.451 9.276 -7.520 1.00 0.00 ATOM 534 C ARG 32 -0.391 7.978 -1.953 1.00 0.00 ATOM 535 O ARG 32 -1.265 7.127 -2.106 1.00 0.00 ATOM 536 N CYS 33 -0.233 8.527 -0.743 1.00 0.00 ATOM 538 CA CYS 33 -1.378 8.378 0.271 1.00 0.00 ATOM 540 CB CYS 33 -1.068 9.408 1.358 1.00 0.00 ATOM 543 SG CYS 33 0.534 9.102 2.144 1.00 0.00 ATOM 545 C CYS 33 -2.826 8.498 -0.158 1.00 0.00 ATOM 546 O CYS 33 -3.626 7.608 0.116 1.00 0.00 ATOM 547 N SER 34 -3.259 9.565 -0.844 1.00 0.00 ATOM 549 CA SER 34 -4.777 9.790 -0.890 1.00 0.00 ATOM 551 CB SER 34 -5.024 11.040 -0.043 1.00 0.00 ATOM 554 OG SER 34 -4.388 12.162 -0.636 1.00 0.00 ATOM 556 C SER 34 -5.456 9.911 -2.150 1.00 0.00 ATOM 557 O SER 34 -6.674 10.074 -2.182 1.00 0.00 ATOM 558 N ASP 35 -4.661 9.825 -3.206 1.00 0.00 ATOM 560 CA ASP 35 -5.027 9.649 -4.529 1.00 0.00 ATOM 562 CB ASP 35 -3.840 9.627 -5.496 1.00 0.00 ATOM 565 CG ASP 35 -3.193 11.004 -5.614 1.00 0.00 ATOM 566 OD1 ASP 35 -2.101 11.086 -6.186 1.00 0.00 ATOM 567 OD2 ASP 35 -4.141 11.981 -4.942 1.00 0.00 ATOM 568 C ASP 35 -5.716 8.375 -4.557 1.00 0.00 ATOM 569 O ASP 35 -6.716 8.230 -5.256 1.00 0.00 ATOM 570 N THR 36 -5.182 7.355 -3.750 1.00 0.00 ATOM 572 CA THR 36 -5.621 5.931 -3.522 1.00 0.00 ATOM 574 CB THR 36 -7.082 5.770 -3.057 1.00 0.00 ATOM 576 CG2 THR 36 -7.323 6.484 -1.729 1.00 0.00 ATOM 580 OG1 THR 36 -7.945 6.328 -4.038 1.00 0.00 ATOM 582 C THR 36 -5.440 5.267 -4.936 1.00 0.00 ATOM 583 O THR 36 -6.048 4.236 -5.216 1.00 0.00 ATOM 584 N LYS 37 -4.604 5.864 -5.799 1.00 0.00 ATOM 586 CA LYS 37 -4.070 5.342 -7.025 1.00 0.00 ATOM 588 CB LYS 37 -3.246 6.387 -7.784 1.00 0.00 ATOM 591 CG LYS 37 -4.123 7.524 -8.306 1.00 0.00 ATOM 594 CD LYS 37 -3.273 8.586 -9.006 1.00 0.00 ATOM 597 CE LYS 37 -4.152 9.716 -9.539 1.00 0.00 ATOM 600 NZ LYS 37 -3.311 10.732 -10.225 1.00 0.00 ATOM 604 C LYS 37 -3.218 4.159 -6.686 1.00 0.00 ATOM 605 O LYS 37 -3.282 3.138 -7.366 1.00 0.00 ATOM 606 N TYR 38 -2.447 4.360 -5.616 1.00 0.00 ATOM 608 CA TYR 38 -1.858 3.392 -4.767 1.00 0.00 ATOM 610 CB TYR 38 -2.954 2.771 -3.894 1.00 0.00 ATOM 613 CG TYR 38 -2.402 2.181 -2.614 1.00 0.00 ATOM 614 CD1 TYR 38 -2.406 2.924 -1.432 1.00 0.00 ATOM 616 CE1 TYR 38 -1.897 2.379 -0.252 1.00 0.00 ATOM 618 CZ TYR 38 -1.382 1.087 -0.253 1.00 0.00 ATOM 619 OH TYR 38 -0.881 0.549 0.909 1.00 0.00 ATOM 621 CE2 TYR 38 -1.373 0.338 -1.424 1.00 0.00 ATOM 623 CD2 TYR 38 -1.883 0.886 -2.603 1.00 0.00 ATOM 625 C TYR 38 -1.138 2.352 -5.467 1.00 0.00 ATOM 626 O TYR 38 -1.345 1.171 -5.198 1.00 0.00 ATOM 627 N THR 39 -0.189 2.608 -6.456 1.00 0.00 ATOM 629 CA THR 39 -0.159 1.619 -7.421 1.00 0.00 ATOM 631 CB THR 39 -0.094 2.122 -8.876 1.00 0.00 ATOM 633 CG2 THR 39 -0.051 0.959 -9.864 1.00 0.00 ATOM 637 OG1 THR 39 -1.246 2.909 -9.147 1.00 0.00 ATOM 639 C THR 39 1.141 0.864 -7.075 1.00 0.00 ATOM 640 O THR 39 2.228 1.426 -7.181 1.00 0.00 ATOM 641 N LEU 40 0.996 -0.353 -6.691 1.00 0.00 ATOM 643 CA LEU 40 2.080 -0.792 -5.840 1.00 0.00 ATOM 645 CB LEU 40 1.648 -1.113 -4.406 1.00 0.00 ATOM 648 CG LEU 40 2.811 -1.588 -3.527 1.00 0.00 ATOM 650 CD1 LEU 40 2.377 -1.641 -2.064 1.00 0.00 ATOM 654 CD2 LEU 40 3.262 -2.983 -3.956 1.00 0.00 ATOM 658 C LEU 40 2.620 -2.093 -6.544 1.00 0.00 ATOM 659 O LEU 40 1.935 -3.113 -6.562 1.00 0.00 ATOM 660 N CYS 41 3.897 -2.153 -7.174 1.00 0.00 ATOM 662 CA CYS 41 4.418 -3.443 -7.228 1.00 0.00 ATOM 664 CB CYS 41 4.057 -3.943 -8.628 1.00 0.00 ATOM 667 SG CYS 41 4.905 -3.002 -9.921 1.00 0.00 ATOM 669 C CYS 41 5.815 -3.709 -6.954 1.00 0.00 ATOM 670 O CYS 41 6.572 -2.766 -6.663 1.00 0.00 ATOM 671 OXT CYS 41 6.253 -4.857 -7.000 1.00 0.00 TER END