####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS085_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.17 2.17 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 33 1 - 33 1.97 2.30 LONGEST_CONTINUOUS_SEGMENT: 33 5 - 37 1.97 2.26 LCS_AVERAGE: 76.20 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.67 4.15 LCS_AVERAGE: 22.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 33 41 3 5 14 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 33 41 6 11 15 21 29 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 33 41 13 13 18 23 29 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 33 41 13 13 15 23 29 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 33 41 13 13 18 25 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 33 41 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 33 41 6 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 7 33 41 3 6 14 23 29 36 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 7 33 41 3 10 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 7 33 41 3 8 17 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 7 33 41 5 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 7 33 41 4 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 33 41 5 13 18 25 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 33 41 3 8 17 25 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 33 41 3 6 12 22 30 36 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 33 41 3 10 16 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 4 33 41 3 4 7 7 11 20 33 38 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 7 33 41 3 8 17 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 7 33 41 3 10 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 7 33 41 3 11 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 7 33 41 5 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 7 33 41 5 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 7 33 41 5 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 7 33 41 4 12 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 6 33 41 3 5 8 15 29 36 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 3 33 41 3 3 4 13 25 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 33 41 5 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 33 41 2 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 15 41 3 6 13 24 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 15 41 3 6 13 25 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 15 41 3 6 10 20 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 15 41 3 6 13 20 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 66.33 ( 22.78 76.20 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 13 18 26 33 37 40 40 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 31.71 31.71 43.90 63.41 80.49 90.24 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.37 0.97 1.38 1.66 1.86 2.05 2.05 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 GDT RMS_ALL_AT 4.50 4.50 2.73 2.22 2.27 2.24 2.18 2.18 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 2.17 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.791 0 0.617 0.764 3.631 45.000 40.303 3.631 LGA Q 2 Q 2 3.142 0 0.247 1.403 3.548 27.727 29.091 2.779 LGA E 3 E 3 2.839 0 0.094 1.151 8.426 27.727 14.343 6.417 LGA T 4 T 4 2.861 0 0.051 1.081 5.568 32.727 23.896 5.568 LGA R 5 R 5 1.742 0 0.056 1.339 4.259 55.000 42.479 4.259 LGA K 6 K 6 1.042 0 0.037 0.644 5.551 69.545 39.798 5.551 LGA K 7 K 7 1.681 0 0.073 0.663 4.851 58.182 31.313 4.851 LGA C 8 C 8 1.645 0 0.063 0.753 5.162 61.818 47.576 5.162 LGA T 9 T 9 0.921 0 0.071 0.123 1.221 77.727 77.143 0.952 LGA E 10 E 10 0.774 0 0.062 0.649 4.197 86.364 50.707 3.873 LGA M 11 M 11 0.767 0 0.086 0.322 1.972 73.636 64.091 1.972 LGA K 12 K 12 2.093 0 0.096 0.629 2.870 38.636 41.616 2.870 LGA K 13 K 13 2.489 0 0.029 0.571 3.782 38.636 30.707 2.420 LGA K 14 K 14 1.582 0 0.085 0.627 3.621 58.182 47.273 1.972 LGA F 15 F 15 1.412 0 0.334 0.400 2.220 65.455 51.570 2.178 LGA K 16 K 16 1.220 0 0.145 1.217 7.979 55.000 28.889 7.979 LGA N 17 N 17 3.315 0 0.103 0.528 5.317 21.364 10.909 5.317 LGA C 18 C 18 0.791 0 0.138 0.829 3.962 50.909 46.667 3.962 LGA E 19 E 19 1.321 0 0.381 0.864 3.489 52.273 41.818 3.489 LGA V 20 V 20 1.798 0 0.255 1.006 4.965 35.000 24.935 4.039 LGA R 21 R 21 2.025 0 0.127 1.121 3.301 35.455 36.033 1.711 LGA C 22 C 22 2.729 0 0.104 0.875 5.946 54.091 39.091 5.946 LGA D 23 D 23 2.356 0 0.148 0.682 3.309 32.727 31.591 2.306 LGA E 24 E 24 3.481 0 0.195 0.915 4.616 16.364 12.121 4.151 LGA S 25 S 25 1.761 0 0.571 1.012 3.102 33.636 41.818 1.625 LGA N 26 N 26 5.247 0 0.126 1.186 9.060 2.727 1.364 8.055 LGA H 27 H 27 1.813 0 0.536 1.136 7.685 29.545 13.091 7.685 LGA C 28 C 28 0.665 0 0.652 0.633 2.776 68.182 60.303 2.295 LGA V 29 V 29 1.815 0 0.140 1.098 3.995 54.545 43.636 2.151 LGA E 30 E 30 1.511 0 0.139 0.554 3.157 51.364 40.808 3.157 LGA V 31 V 31 0.737 0 0.644 0.724 2.469 71.364 73.506 0.875 LGA R 32 R 32 0.666 0 0.271 0.924 3.373 69.545 52.397 3.373 LGA C 33 C 33 1.628 0 0.484 1.031 5.135 35.909 43.939 0.973 LGA S 34 S 34 3.264 0 0.426 0.890 5.435 23.636 16.667 5.435 LGA D 35 D 35 3.107 0 0.367 1.224 8.250 30.455 15.909 8.250 LGA T 36 T 36 0.866 0 0.600 0.685 4.020 50.909 55.065 1.301 LGA K 37 K 37 1.352 0 0.319 1.035 2.694 65.909 53.939 2.692 LGA Y 38 Y 38 2.505 0 0.110 1.220 4.728 41.818 43.333 4.728 LGA T 39 T 39 2.442 0 0.143 0.136 3.365 30.455 25.195 3.279 LGA L 40 L 40 2.549 0 0.554 1.275 5.016 29.091 22.500 2.664 LGA C 41 C 41 2.625 0 0.388 0.799 5.803 19.091 15.065 5.691 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.172 2.324 3.112 45.798 37.134 22.927 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 2.05 73.171 79.759 1.861 LGA_LOCAL RMSD: 2.049 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.184 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.172 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.260518 * X + -0.520177 * Y + 0.813355 * Z + 22.408743 Y_new = -0.390056 * X + -0.827339 * Y + -0.404185 * Z + 13.964214 Z_new = 0.883168 * X + -0.211957 * Y + -0.418435 * Z + 47.754879 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.981941 -1.082575 -2.672722 [DEG: -56.2611 -62.0270 -153.1357 ] ZXZ: 1.109603 2.002518 1.806337 [DEG: 63.5756 114.7358 103.4955 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS085_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS085_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 2.05 79.759 2.17 REMARK ---------------------------------------------------------- MOLECULE T0955TS085_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 1.507 -14.691 0.236 1.00 0.00 ATOM 5 CA SER 1 0.335 -13.836 0.397 1.00 0.00 ATOM 7 CB SER 1 -0.929 -14.685 0.542 1.00 0.00 ATOM 10 OG SER 1 -0.998 -15.233 1.850 1.00 0.00 ATOM 12 C SER 1 0.488 -12.921 1.607 1.00 0.00 ATOM 13 O SER 1 0.161 -11.738 1.531 1.00 0.00 ATOM 15 N GLN 2 0.993 -13.547 2.669 1.00 0.00 ATOM 17 CA GLN 2 1.399 -12.724 3.872 1.00 0.00 ATOM 19 CB GLN 2 1.888 -13.594 5.034 1.00 0.00 ATOM 22 CG GLN 2 0.754 -14.431 5.624 1.00 0.00 ATOM 25 CD GLN 2 -0.360 -13.542 6.166 1.00 0.00 ATOM 26 OE1 GLN 2 -0.113 -12.618 6.927 1.00 0.00 ATOM 27 NE2 GLN 2 -1.593 -13.803 5.788 1.00 0.00 ATOM 30 C GLN 2 2.436 -11.841 3.453 1.00 0.00 ATOM 31 O GLN 2 2.478 -10.691 3.885 1.00 0.00 ATOM 32 N GLU 3 3.382 -12.358 2.526 1.00 0.00 ATOM 34 CA GLU 3 4.366 -11.477 1.995 1.00 0.00 ATOM 36 CB GLU 3 5.286 -12.306 1.096 1.00 0.00 ATOM 39 CG GLU 3 6.403 -11.452 0.497 1.00 0.00 ATOM 42 CD GLU 3 7.348 -12.301 -0.346 1.00 0.00 ATOM 43 OE1 GLU 3 7.111 -13.508 -0.449 1.00 0.00 ATOM 44 OE2 GLU 3 8.307 -11.736 -0.886 1.00 0.00 ATOM 45 C GLU 3 3.879 -10.327 1.278 1.00 0.00 ATOM 46 O GLU 3 4.358 -9.217 1.497 1.00 0.00 ATOM 47 N THR 4 2.861 -10.464 0.337 1.00 0.00 ATOM 49 CA THR 4 2.388 -9.293 -0.277 1.00 0.00 ATOM 51 CB THR 4 1.423 -9.694 -1.410 1.00 0.00 ATOM 53 CG2 THR 4 0.857 -8.466 -2.118 1.00 0.00 ATOM 57 OG1 THR 4 2.125 -10.485 -2.360 1.00 0.00 ATOM 59 C THR 4 1.724 -8.331 0.620 1.00 0.00 ATOM 60 O THR 4 1.926 -7.126 0.490 1.00 0.00 ATOM 61 N ARG 5 0.916 -8.975 1.554 1.00 0.00 ATOM 63 CA ARG 5 0.233 -8.160 2.447 1.00 0.00 ATOM 65 CB ARG 5 -0.738 -9.014 3.266 1.00 0.00 ATOM 68 CG ARG 5 -1.634 -8.153 4.156 1.00 0.00 ATOM 71 CD ARG 5 -2.551 -9.029 5.009 1.00 0.00 ATOM 74 NE ARG 5 -3.465 -9.794 4.135 1.00 0.00 ATOM 76 CZ ARG 5 -4.608 -9.295 3.700 1.00 0.00 ATOM 77 NH1 ARG 5 -5.395 -10.011 2.923 1.00 0.00 ATOM 80 NH2 ARG 5 -4.962 -8.074 4.043 1.00 0.00 ATOM 83 C ARG 5 1.135 -7.403 3.353 1.00 0.00 ATOM 84 O ARG 5 0.889 -6.231 3.630 1.00 0.00 ATOM 85 N LYS 6 2.218 -7.972 3.873 1.00 0.00 ATOM 87 CA LYS 6 3.205 -7.323 4.717 1.00 0.00 ATOM 89 CB LYS 6 4.239 -8.336 5.218 1.00 0.00 ATOM 92 CG LYS 6 5.297 -7.671 6.100 1.00 0.00 ATOM 95 CD LYS 6 6.310 -8.702 6.599 1.00 0.00 ATOM 98 CE LYS 6 7.373 -8.034 7.470 1.00 0.00 ATOM 101 NZ LYS 6 8.356 -9.047 7.936 1.00 0.00 ATOM 105 C LYS 6 3.882 -6.224 3.972 1.00 0.00 ATOM 106 O LYS 6 4.110 -5.152 4.527 1.00 0.00 ATOM 107 N LYS 7 4.239 -6.440 2.643 1.00 0.00 ATOM 109 CA LYS 7 4.840 -5.450 1.796 1.00 0.00 ATOM 111 CB LYS 7 5.212 -6.031 0.428 1.00 0.00 ATOM 114 CG LYS 7 6.391 -6.999 0.532 1.00 0.00 ATOM 117 CD LYS 7 6.770 -7.538 -0.848 1.00 0.00 ATOM 120 CE LYS 7 7.955 -8.496 -0.746 1.00 0.00 ATOM 123 NZ LYS 7 8.318 -9.001 -2.097 1.00 0.00 ATOM 127 C LYS 7 3.899 -4.338 1.634 1.00 0.00 ATOM 128 O LYS 7 4.301 -3.178 1.693 1.00 0.00 ATOM 129 N CYS 8 2.541 -4.552 1.417 1.00 0.00 ATOM 131 CA CYS 8 1.604 -3.488 1.364 1.00 0.00 ATOM 133 CB CYS 8 0.227 -4.024 0.965 1.00 0.00 ATOM 136 SG CYS 8 0.189 -4.572 -0.760 1.00 0.00 ATOM 138 C CYS 8 1.515 -2.797 2.621 1.00 0.00 ATOM 139 O CYS 8 1.409 -1.573 2.646 1.00 0.00 ATOM 140 N THR 9 1.547 -3.430 3.824 1.00 0.00 ATOM 142 CA THR 9 1.559 -2.815 5.076 1.00 0.00 ATOM 144 CB THR 9 1.525 -3.884 6.186 1.00 0.00 ATOM 146 CG2 THR 9 1.550 -3.246 7.573 1.00 0.00 ATOM 150 OG1 THR 9 0.335 -4.651 6.058 1.00 0.00 ATOM 152 C THR 9 2.690 -1.967 5.263 1.00 0.00 ATOM 153 O THR 9 2.548 -0.849 5.756 1.00 0.00 ATOM 154 N GLU 10 3.918 -2.535 4.827 1.00 0.00 ATOM 156 CA GLU 10 5.054 -1.747 4.940 1.00 0.00 ATOM 158 CB GLU 10 6.292 -2.582 4.602 1.00 0.00 ATOM 161 CG GLU 10 6.542 -3.664 5.652 1.00 0.00 ATOM 164 CD GLU 10 7.694 -4.573 5.237 1.00 0.00 ATOM 165 OE1 GLU 10 8.063 -5.443 6.032 1.00 0.00 ATOM 166 OE2 GLU 10 8.200 -4.391 4.124 1.00 0.00 ATOM 167 C GLU 10 5.000 -0.567 4.092 1.00 0.00 ATOM 168 O GLU 10 5.383 0.518 4.522 1.00 0.00 ATOM 169 N MET 11 4.530 -0.726 2.888 1.00 0.00 ATOM 171 CA MET 11 4.408 0.333 2.010 1.00 0.00 ATOM 173 CB MET 11 4.076 -0.162 0.600 1.00 0.00 ATOM 176 CG MET 11 5.261 -0.894 -0.029 1.00 0.00 ATOM 179 SD MET 11 6.685 0.199 -0.228 1.00 0.00 ATOM 180 CE MET 11 7.194 0.308 1.498 1.00 0.00 ATOM 184 C MET 11 3.396 1.227 2.463 1.00 0.00 ATOM 185 O MET 11 3.526 2.439 2.302 1.00 0.00 ATOM 186 N LYS 12 2.253 0.792 3.092 1.00 0.00 ATOM 188 CA LYS 12 1.320 1.655 3.641 1.00 0.00 ATOM 190 CB LYS 12 0.118 0.871 4.178 1.00 0.00 ATOM 193 CG LYS 12 -0.969 1.803 4.712 1.00 0.00 ATOM 196 CD LYS 12 -2.163 1.002 5.231 1.00 0.00 ATOM 199 CE LYS 12 -3.243 1.934 5.777 1.00 0.00 ATOM 202 NZ LYS 12 -4.391 1.139 6.287 1.00 0.00 ATOM 206 C LYS 12 1.909 2.446 4.697 1.00 0.00 ATOM 207 O LYS 12 1.683 3.652 4.763 1.00 0.00 ATOM 208 N LYS 13 2.746 1.758 5.616 1.00 0.00 ATOM 210 CA LYS 13 3.328 2.550 6.707 1.00 0.00 ATOM 212 CB LYS 13 4.139 1.696 7.687 1.00 0.00 ATOM 215 CG LYS 13 3.241 0.741 8.476 1.00 0.00 ATOM 218 CD LYS 13 4.075 -0.143 9.403 1.00 0.00 ATOM 221 CE LYS 13 3.177 -1.090 10.199 1.00 0.00 ATOM 224 NZ LYS 13 4.003 -1.932 11.102 1.00 0.00 ATOM 228 C LYS 13 4.243 3.615 6.042 1.00 0.00 ATOM 229 O LYS 13 4.203 4.784 6.419 1.00 0.00 ATOM 230 N LYS 14 5.015 3.253 5.111 1.00 0.00 ATOM 232 CA LYS 14 5.915 4.138 4.548 1.00 0.00 ATOM 234 CB LYS 14 7.022 3.287 3.918 1.00 0.00 ATOM 237 CG LYS 14 7.860 2.578 4.983 1.00 0.00 ATOM 240 CD LYS 14 8.950 1.724 4.333 1.00 0.00 ATOM 243 CE LYS 14 9.794 1.026 5.398 1.00 0.00 ATOM 246 NZ LYS 14 10.857 0.211 4.749 1.00 0.00 ATOM 250 C LYS 14 5.423 5.085 3.601 1.00 0.00 ATOM 251 O LYS 14 6.018 6.147 3.426 1.00 0.00 ATOM 252 N PHE 15 4.317 4.771 2.942 1.00 0.00 ATOM 254 CA PHE 15 3.560 5.703 2.240 1.00 0.00 ATOM 256 CB PHE 15 2.864 4.983 1.079 1.00 0.00 ATOM 259 CG PHE 15 3.854 4.438 0.075 1.00 0.00 ATOM 260 CD1 PHE 15 3.558 3.286 -0.650 1.00 0.00 ATOM 262 CE1 PHE 15 4.473 2.783 -1.575 1.00 0.00 ATOM 264 CZ PHE 15 5.684 3.432 -1.777 1.00 0.00 ATOM 266 CE2 PHE 15 5.985 4.581 -1.056 1.00 0.00 ATOM 268 CD2 PHE 15 5.071 5.083 -0.131 1.00 0.00 ATOM 270 C PHE 15 2.502 6.468 3.105 1.00 0.00 ATOM 271 O PHE 15 1.942 7.464 2.654 1.00 0.00 ATOM 272 N LYS 16 2.186 6.104 4.291 1.00 0.00 ATOM 274 CA LYS 16 1.666 7.144 5.267 1.00 0.00 ATOM 276 CB LYS 16 1.362 6.505 6.625 1.00 0.00 ATOM 279 CG LYS 16 0.134 5.596 6.557 1.00 0.00 ATOM 282 CD LYS 16 -0.145 4.960 7.919 1.00 0.00 ATOM 285 CE LYS 16 -1.378 4.061 7.852 1.00 0.00 ATOM 288 NZ LYS 16 -1.642 3.461 9.187 1.00 0.00 ATOM 292 C LYS 16 2.746 8.347 5.443 1.00 0.00 ATOM 293 O LYS 16 2.570 9.215 6.294 1.00 0.00 ATOM 294 N ASN 17 3.706 8.226 4.607 1.00 0.00 ATOM 296 CA ASN 17 4.041 9.250 3.511 1.00 0.00 ATOM 298 CB ASN 17 5.377 8.789 2.921 1.00 0.00 ATOM 301 CG ASN 17 6.520 9.003 3.908 1.00 0.00 ATOM 302 OD1 ASN 17 6.383 9.729 4.882 1.00 0.00 ATOM 303 ND2 ASN 17 7.656 8.381 3.673 1.00 0.00 ATOM 306 C ASN 17 3.001 9.551 2.343 1.00 0.00 ATOM 307 O ASN 17 2.857 10.699 1.928 1.00 0.00 ATOM 308 N CYS 18 2.199 8.555 1.736 1.00 0.00 ATOM 310 CA CYS 18 0.687 8.588 1.765 1.00 0.00 ATOM 312 CB CYS 18 0.307 9.781 0.886 1.00 0.00 ATOM 315 SG CYS 18 -1.415 10.282 1.132 1.00 0.00 ATOM 317 C CYS 18 -0.099 7.417 1.383 1.00 0.00 ATOM 318 O CYS 18 0.157 6.814 0.343 1.00 0.00 ATOM 319 N GLU 19 -1.145 6.930 2.131 1.00 0.00 ATOM 321 CA GLU 19 -2.259 6.207 1.721 1.00 0.00 ATOM 323 CB GLU 19 -3.069 7.145 0.822 1.00 0.00 ATOM 326 CG GLU 19 -3.897 8.133 1.644 1.00 0.00 ATOM 329 CD GLU 19 -4.819 8.954 0.748 1.00 0.00 ATOM 330 OE1 GLU 19 -5.650 8.351 0.063 1.00 0.00 ATOM 331 OE2 GLU 19 -4.685 10.182 0.754 1.00 0.00 ATOM 332 C GLU 19 -2.060 4.950 1.068 1.00 0.00 ATOM 333 O GLU 19 -0.937 4.455 1.014 1.00 0.00 ATOM 334 N VAL 20 -3.081 4.400 0.559 1.00 0.00 ATOM 336 CA VAL 20 -3.001 3.068 0.078 1.00 0.00 ATOM 338 CB VAL 20 -2.836 1.972 1.156 1.00 0.00 ATOM 340 CG1 VAL 20 -4.086 1.890 2.032 1.00 0.00 ATOM 344 CG2 VAL 20 -2.613 0.610 0.500 1.00 0.00 ATOM 348 C VAL 20 -4.300 2.928 -0.588 1.00 0.00 ATOM 349 O VAL 20 -5.234 3.663 -0.276 1.00 0.00 ATOM 350 N ARG 21 -4.536 2.041 -1.512 1.00 0.00 ATOM 352 CA ARG 21 -5.535 0.953 -1.174 1.00 0.00 ATOM 354 CB ARG 21 -6.979 1.272 -1.569 1.00 0.00 ATOM 357 CG ARG 21 -7.957 0.234 -1.017 1.00 0.00 ATOM 360 CD ARG 21 -9.390 0.565 -1.432 1.00 0.00 ATOM 363 NE ARG 21 -9.537 0.399 -2.894 1.00 0.00 ATOM 365 CZ ARG 21 -10.677 0.631 -3.520 1.00 0.00 ATOM 366 NH1 ARG 21 -10.766 0.471 -4.825 1.00 0.00 ATOM 369 NH2 ARG 21 -11.729 1.025 -2.835 1.00 0.00 ATOM 372 C ARG 21 -5.050 -0.178 -1.939 1.00 0.00 ATOM 373 O ARG 21 -4.629 -0.015 -3.081 1.00 0.00 ATOM 374 N CYS 22 -5.153 -1.387 -1.190 1.00 0.00 ATOM 376 CA CYS 22 -4.958 -2.824 -1.600 1.00 0.00 ATOM 378 CB CYS 22 -3.777 -3.526 -0.928 1.00 0.00 ATOM 381 SG CYS 22 -3.601 -5.239 -1.484 1.00 0.00 ATOM 383 C CYS 22 -6.184 -3.429 -1.185 1.00 0.00 ATOM 384 O CYS 22 -6.631 -3.209 -0.062 1.00 0.00 ATOM 385 N ASP 23 -6.812 -4.261 -2.109 1.00 0.00 ATOM 387 CA ASP 23 -8.204 -4.563 -1.953 1.00 0.00 ATOM 389 CB ASP 23 -9.084 -4.293 -3.177 1.00 0.00 ATOM 392 CG ASP 23 -9.029 -2.825 -3.589 1.00 0.00 ATOM 393 OD1 ASP 23 -9.547 -2.501 -4.662 1.00 0.00 ATOM 394 OD2 ASP 23 -8.292 -2.096 -2.478 1.00 0.00 ATOM 395 C ASP 23 -8.139 -5.979 -1.693 1.00 0.00 ATOM 396 O ASP 23 -7.153 -6.625 -2.044 1.00 0.00 ATOM 397 N GLU 24 -9.157 -6.475 -1.100 1.00 0.00 ATOM 399 CA GLU 24 -9.091 -7.735 -0.367 1.00 0.00 ATOM 401 CB GLU 24 -9.921 -7.663 0.917 1.00 0.00 ATOM 404 CG GLU 24 -9.315 -6.684 1.923 1.00 0.00 ATOM 407 CD GLU 24 -7.979 -7.199 2.450 1.00 0.00 ATOM 408 OE1 GLU 24 -7.247 -6.408 3.049 1.00 0.00 ATOM 409 OE2 GLU 24 -7.698 -8.386 2.247 1.00 0.00 ATOM 410 C GLU 24 -9.608 -8.940 -1.291 1.00 0.00 ATOM 411 O GLU 24 -9.794 -10.054 -0.806 1.00 0.00 ATOM 412 N SER 25 -9.795 -8.585 -2.602 1.00 0.00 ATOM 414 CA SER 25 -9.138 -9.528 -3.561 1.00 0.00 ATOM 416 CB SER 25 -9.813 -9.551 -4.935 1.00 0.00 ATOM 419 OG SER 25 -9.642 -8.299 -5.582 1.00 0.00 ATOM 421 C SER 25 -7.793 -9.081 -3.690 1.00 0.00 ATOM 422 O SER 25 -7.476 -8.344 -4.621 1.00 0.00 ATOM 423 N ASN 26 -6.982 -9.579 -2.689 1.00 0.00 ATOM 425 CA ASN 26 -5.621 -9.824 -2.713 1.00 0.00 ATOM 427 CB ASN 26 -5.413 -10.793 -3.880 1.00 0.00 ATOM 430 CG ASN 26 -5.977 -12.172 -3.560 1.00 0.00 ATOM 431 OD1 ASN 26 -5.646 -12.769 -2.544 1.00 0.00 ATOM 432 ND2 ASN 26 -6.832 -12.699 -4.413 1.00 0.00 ATOM 435 C ASN 26 -4.550 -8.604 -2.800 1.00 0.00 ATOM 436 O ASN 26 -3.533 -8.626 -2.109 1.00 0.00 ATOM 437 N HIS 27 -4.875 -7.669 -3.624 1.00 0.00 ATOM 439 CA HIS 27 -4.307 -7.276 -4.866 1.00 0.00 ATOM 441 CB HIS 27 -5.188 -7.729 -6.034 1.00 0.00 ATOM 444 CG HIS 27 -4.611 -7.394 -7.378 1.00 0.00 ATOM 445 ND1 HIS 27 -3.444 -7.950 -7.858 1.00 0.00 ATOM 446 CE1 HIS 27 -3.197 -7.457 -9.065 1.00 0.00 ATOM 448 NE2 HIS 27 -4.160 -6.603 -9.385 1.00 0.00 ATOM 450 CD2 HIS 27 -5.052 -6.549 -8.346 1.00 0.00 ATOM 452 C HIS 27 -4.116 -5.755 -4.910 1.00 0.00 ATOM 453 O HIS 27 -4.924 -5.017 -4.351 1.00 0.00 ATOM 454 N CYS 28 -2.984 -5.342 -5.625 1.00 0.00 ATOM 456 CA CYS 28 -1.699 -4.844 -5.180 1.00 0.00 ATOM 458 CB CYS 28 -0.853 -4.766 -6.452 1.00 0.00 ATOM 461 SG CYS 28 -0.442 -6.408 -7.094 1.00 0.00 ATOM 463 C CYS 28 -1.591 -3.626 -4.451 1.00 0.00 ATOM 464 O CYS 28 -0.715 -3.491 -3.602 1.00 0.00 ATOM 465 N VAL 29 -2.504 -2.727 -4.783 1.00 0.00 ATOM 467 CA VAL 29 -2.435 -1.285 -4.358 1.00 0.00 ATOM 469 CB VAL 29 -1.849 -1.320 -2.930 1.00 0.00 ATOM 471 CG1 VAL 29 -0.403 -1.813 -2.956 1.00 0.00 ATOM 475 CG2 VAL 29 -1.872 0.077 -2.310 1.00 0.00 ATOM 479 C VAL 29 -1.731 -0.276 -5.169 1.00 0.00 ATOM 480 O VAL 29 -0.766 -0.604 -5.858 1.00 0.00 ATOM 481 N GLU 30 -2.236 0.900 -5.050 1.00 0.00 ATOM 483 CA GLU 30 -1.725 2.071 -5.614 1.00 0.00 ATOM 485 CB GLU 30 -2.316 2.465 -6.971 1.00 0.00 ATOM 488 CG GLU 30 -3.814 2.752 -6.867 1.00 0.00 ATOM 491 CD GLU 30 -4.354 3.322 -8.175 1.00 0.00 ATOM 492 OE1 GLU 30 -3.567 3.466 -9.114 1.00 0.00 ATOM 493 OE2 GLU 30 -5.555 3.609 -8.227 1.00 0.00 ATOM 494 C GLU 30 -2.097 3.023 -4.622 1.00 0.00 ATOM 495 O GLU 30 -3.112 2.850 -3.952 1.00 0.00 ATOM 496 N VAL 31 -1.333 4.037 -4.487 1.00 0.00 ATOM 498 CA VAL 31 -0.895 4.590 -3.299 1.00 0.00 ATOM 500 CB VAL 31 0.607 4.240 -3.194 1.00 0.00 ATOM 502 CG1 VAL 31 1.264 5.037 -2.067 1.00 0.00 ATOM 506 CG2 VAL 31 0.787 2.751 -2.903 1.00 0.00 ATOM 510 C VAL 31 -1.091 5.980 -3.058 1.00 0.00 ATOM 511 O VAL 31 -0.694 6.486 -2.012 1.00 0.00 ATOM 512 N ARG 32 -1.682 6.710 -3.911 1.00 0.00 ATOM 514 CA ARG 32 -2.340 7.936 -3.705 1.00 0.00 ATOM 516 CB ARG 32 -3.578 7.577 -2.881 1.00 0.00 ATOM 519 CG ARG 32 -4.512 6.639 -3.648 1.00 0.00 ATOM 522 CD ARG 32 -5.630 6.128 -2.740 1.00 0.00 ATOM 525 NE ARG 32 -6.498 7.253 -2.334 1.00 0.00 ATOM 527 CZ ARG 32 -7.528 7.093 -1.521 1.00 0.00 ATOM 528 NH1 ARG 32 -8.278 8.122 -1.185 1.00 0.00 ATOM 531 NH2 ARG 32 -7.806 5.897 -1.047 1.00 0.00 ATOM 534 C ARG 32 -1.627 9.116 -3.081 1.00 0.00 ATOM 535 O ARG 32 -2.194 9.800 -2.232 1.00 0.00 ATOM 536 N CYS 33 -0.337 9.361 -3.526 1.00 0.00 ATOM 538 CA CYS 33 0.486 10.015 -2.604 1.00 0.00 ATOM 540 CB CYS 33 1.474 8.941 -2.146 1.00 0.00 ATOM 543 SG CYS 33 2.748 9.615 -1.052 1.00 0.00 ATOM 545 C CYS 33 1.189 11.208 -2.944 1.00 0.00 ATOM 546 O CYS 33 1.858 11.255 -3.975 1.00 0.00 ATOM 547 N SER 34 1.135 12.227 -2.188 1.00 0.00 ATOM 549 CA SER 34 1.081 13.610 -2.485 1.00 0.00 ATOM 551 CB SER 34 2.358 14.035 -3.214 1.00 0.00 ATOM 554 OG SER 34 2.352 13.531 -4.542 1.00 0.00 ATOM 556 C SER 34 -0.158 13.974 -3.342 1.00 0.00 ATOM 557 O SER 34 -0.179 15.023 -3.981 1.00 0.00 ATOM 558 N ASP 35 -1.201 13.011 -3.294 1.00 0.00 ATOM 560 CA ASP 35 -2.035 12.932 -4.574 1.00 0.00 ATOM 562 CB ASP 35 -2.970 14.142 -4.661 1.00 0.00 ATOM 565 CG ASP 35 -4.070 14.072 -3.606 1.00 0.00 ATOM 566 OD1 ASP 35 -4.711 15.099 -3.363 1.00 0.00 ATOM 567 OD2 ASP 35 -4.081 12.641 -3.095 1.00 0.00 ATOM 568 C ASP 35 -1.211 12.857 -5.756 1.00 0.00 ATOM 569 O ASP 35 -1.495 13.525 -6.749 1.00 0.00 ATOM 570 N THR 36 -0.132 11.955 -5.574 1.00 0.00 ATOM 572 CA THR 36 0.580 11.612 -6.878 1.00 0.00 ATOM 574 CB THR 36 1.791 10.672 -6.720 1.00 0.00 ATOM 576 CG2 THR 36 2.226 10.096 -8.066 1.00 0.00 ATOM 580 OG1 THR 36 2.876 11.401 -6.165 1.00 0.00 ATOM 582 C THR 36 -0.526 10.907 -7.724 1.00 0.00 ATOM 583 O THR 36 -0.632 11.150 -8.925 1.00 0.00 ATOM 584 N LYS 37 -1.275 10.076 -6.991 1.00 0.00 ATOM 586 CA LYS 37 -1.695 8.778 -7.244 1.00 0.00 ATOM 588 CB LYS 37 -2.700 8.882 -8.395 1.00 0.00 ATOM 591 CG LYS 37 -3.317 7.523 -8.728 1.00 0.00 ATOM 594 CD LYS 37 -4.325 7.651 -9.869 1.00 0.00 ATOM 597 CE LYS 37 -4.931 6.290 -10.209 1.00 0.00 ATOM 600 NZ LYS 37 -5.900 6.431 -11.330 1.00 0.00 ATOM 604 C LYS 37 -0.708 7.763 -7.534 1.00 0.00 ATOM 605 O LYS 37 -0.735 7.167 -8.609 1.00 0.00 ATOM 606 N TYR 38 0.186 7.578 -6.501 1.00 0.00 ATOM 608 CA TYR 38 1.511 6.824 -6.486 1.00 0.00 ATOM 610 CB TYR 38 2.300 6.941 -5.177 1.00 0.00 ATOM 613 CG TYR 38 3.610 6.181 -5.228 1.00 0.00 ATOM 614 CD1 TYR 38 4.759 6.785 -5.741 1.00 0.00 ATOM 616 CE1 TYR 38 5.966 6.083 -5.787 1.00 0.00 ATOM 618 CZ TYR 38 6.024 4.775 -5.319 1.00 0.00 ATOM 619 OH TYR 38 7.211 4.084 -5.363 1.00 0.00 ATOM 621 CE2 TYR 38 4.885 4.165 -4.806 1.00 0.00 ATOM 623 CD2 TYR 38 3.680 4.868 -4.761 1.00 0.00 ATOM 625 C TYR 38 1.089 5.447 -6.689 1.00 0.00 ATOM 626 O TYR 38 -0.060 5.108 -6.413 1.00 0.00 ATOM 627 N THR 39 1.873 4.521 -7.150 1.00 0.00 ATOM 629 CA THR 39 1.123 3.219 -7.436 1.00 0.00 ATOM 631 CB THR 39 0.709 3.085 -8.914 1.00 0.00 ATOM 633 CG2 THR 39 -0.024 1.770 -9.168 1.00 0.00 ATOM 637 OG1 THR 39 -0.153 4.161 -9.256 1.00 0.00 ATOM 639 C THR 39 2.021 2.098 -7.066 1.00 0.00 ATOM 640 O THR 39 3.201 2.113 -7.411 1.00 0.00 ATOM 641 N LEU 40 1.541 0.987 -6.315 1.00 0.00 ATOM 643 CA LEU 40 2.367 0.532 -5.302 1.00 0.00 ATOM 645 CB LEU 40 1.625 0.369 -3.973 1.00 0.00 ATOM 648 CG LEU 40 2.496 -0.260 -2.879 1.00 0.00 ATOM 650 CD1 LEU 40 3.701 0.631 -2.588 1.00 0.00 ATOM 654 CD2 LEU 40 1.689 -0.429 -1.593 1.00 0.00 ATOM 658 C LEU 40 2.891 -0.728 -5.728 1.00 0.00 ATOM 659 O LEU 40 4.106 -0.886 -5.834 1.00 0.00 ATOM 660 N CYS 41 1.998 -1.793 -6.034 1.00 0.00 ATOM 662 CA CYS 41 2.281 -2.656 -7.080 1.00 0.00 ATOM 664 CB CYS 41 2.419 -4.036 -6.437 1.00 0.00 ATOM 667 SG CYS 41 3.907 -4.162 -5.414 1.00 0.00 ATOM 669 C CYS 41 1.401 -2.729 -8.211 1.00 0.00 ATOM 670 O CYS 41 0.384 -2.011 -8.243 1.00 0.00 ATOM 671 OXT CYS 41 1.648 -3.487 -9.145 1.00 0.00 TER END