####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS055_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS055_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.19 1.19 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.19 1.19 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 0.95 1.21 LCS_AVERAGE: 95.36 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 5 17 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 40 41 41 10 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 40 41 41 14 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 40 41 41 14 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 40 41 41 12 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 40 41 41 10 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 40 41 41 12 29 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 40 41 41 12 28 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 40 41 41 12 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 40 41 41 5 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 40 41 41 5 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 40 41 41 5 24 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 40 41 41 5 11 34 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 40 41 41 13 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 40 41 41 15 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 40 41 41 15 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 40 41 41 5 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 40 41 41 3 9 16 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 40 41 41 5 13 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 40 41 41 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 40 41 41 3 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 40 41 41 3 26 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 40 41 41 9 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 40 41 41 9 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 40 41 41 5 26 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 98.45 ( 95.36 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 30 38 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 41.46 73.17 92.68 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.63 0.82 0.87 0.95 0.95 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 GDT RMS_ALL_AT 1.32 1.23 1.24 1.23 1.21 1.21 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 1.19 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.555 0 0.169 0.794 6.950 3.182 2.121 6.708 LGA Q 2 Q 2 1.118 0 0.227 1.190 5.134 78.182 51.313 5.134 LGA E 3 E 3 0.384 0 0.047 1.413 5.404 100.000 59.192 4.803 LGA T 4 T 4 0.328 0 0.027 1.140 2.803 100.000 80.000 1.773 LGA R 5 R 5 0.721 0 0.020 0.359 3.169 82.273 56.860 3.169 LGA K 6 K 6 0.889 0 0.025 1.162 4.451 77.727 52.525 4.451 LGA K 7 K 7 0.650 0 0.016 0.705 2.525 81.818 68.687 2.525 LGA C 8 C 8 0.519 0 0.031 0.755 2.400 81.818 74.545 2.400 LGA T 9 T 9 1.125 0 0.024 0.100 1.827 69.545 65.714 1.381 LGA E 10 E 10 1.259 0 0.033 0.514 2.641 73.636 55.556 2.008 LGA M 11 M 11 0.677 0 0.040 0.163 1.267 90.909 82.273 1.267 LGA K 12 K 12 0.222 0 0.021 0.672 2.066 100.000 86.263 2.015 LGA K 13 K 13 0.614 0 0.037 0.584 1.766 86.364 75.152 1.766 LGA K 14 K 14 0.672 0 0.016 0.588 2.804 81.818 75.758 2.804 LGA F 15 F 15 0.585 0 0.066 0.298 2.546 81.818 63.140 2.336 LGA K 16 K 16 0.927 0 0.035 1.266 5.502 77.727 52.323 5.502 LGA N 17 N 17 1.110 0 0.216 0.475 2.512 73.636 57.727 2.512 LGA C 18 C 18 1.254 0 0.030 0.071 1.553 65.455 63.030 1.553 LGA E 19 E 19 0.927 0 0.219 0.512 2.323 81.818 68.081 1.303 LGA V 20 V 20 1.072 0 0.072 0.089 1.297 65.455 67.792 0.986 LGA R 21 R 21 1.087 0 0.064 1.151 4.572 73.636 41.653 4.572 LGA C 22 C 22 1.497 0 0.231 0.951 4.603 55.000 45.455 4.603 LGA D 23 D 23 1.846 0 0.402 1.212 4.524 37.727 32.273 2.988 LGA E 24 E 24 0.578 0 0.086 0.567 2.716 86.364 62.020 2.597 LGA S 25 S 25 0.341 0 0.126 0.683 2.382 100.000 86.667 2.382 LGA N 26 N 26 0.620 0 0.116 1.177 5.481 95.455 62.500 5.481 LGA H 27 H 27 0.386 0 0.048 0.239 1.190 100.000 87.636 1.190 LGA C 28 C 28 0.391 0 0.096 0.135 1.091 86.818 88.182 0.544 LGA V 29 V 29 0.291 0 0.079 0.105 1.014 95.455 87.273 0.649 LGA E 30 E 30 0.442 0 0.085 0.638 2.810 100.000 82.020 0.639 LGA V 31 V 31 0.172 0 0.067 0.089 0.224 100.000 100.000 0.224 LGA R 32 R 32 0.307 0 0.080 0.797 2.003 95.455 77.025 0.975 LGA C 33 C 33 0.956 0 0.520 1.086 4.273 59.545 59.091 1.213 LGA S 34 S 34 2.271 0 0.526 0.508 3.782 41.364 32.424 3.592 LGA D 35 D 35 1.861 0 0.188 1.042 7.066 61.818 34.773 7.066 LGA T 36 T 36 1.038 0 0.236 1.069 3.071 69.545 57.143 2.020 LGA K 37 K 37 0.802 0 0.067 1.198 2.310 70.000 60.000 2.258 LGA Y 38 Y 38 1.282 0 0.032 1.306 4.024 77.727 55.606 4.024 LGA T 39 T 39 0.837 0 0.096 0.113 1.699 74.091 68.312 1.400 LGA L 40 L 40 0.651 0 0.151 0.310 1.885 81.818 73.864 1.885 LGA C 41 C 41 1.251 0 0.116 0.789 3.732 65.455 60.000 3.732 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.194 1.325 1.954 77.572 63.707 38.182 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.19 92.073 96.684 3.169 LGA_LOCAL RMSD: 1.194 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.194 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.194 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.406942 * X + -0.039606 * Y + -0.912595 * Z + 4.046190 Y_new = 0.795273 * X + -0.506853 * Y + -0.332628 * Z + 0.590188 Z_new = -0.449377 * X + -0.861122 * Y + 0.237757 * Z + 3.421317 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.043761 0.466068 -1.301407 [DEG: 117.0989 26.7037 -74.5651 ] ZXZ: -1.221275 1.330740 -2.660618 [DEG: -69.9739 76.2458 -152.4422 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS055_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS055_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.19 96.684 1.19 REMARK ---------------------------------------------------------- MOLECULE T0955TS055_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -4.496 -11.873 0.909 1.00 1.65 N ATOM 2 CA SER 1 -3.187 -11.878 0.268 1.00 1.65 C ATOM 3 C SER 1 -2.091 -11.367 1.176 1.00 1.65 C ATOM 4 O SER 1 -1.899 -10.156 1.319 1.00 1.65 O ATOM 5 CB SER 1 -3.219 -11.027 -0.983 1.00 1.65 C ATOM 6 OG SER 1 -1.942 -10.969 -1.610 1.00 1.65 O ATOM 14 N GLN 2 -1.308 -12.285 1.735 1.00 1.47 N ATOM 15 CA GLN 2 -0.235 -11.888 2.640 1.00 1.47 C ATOM 16 C GLN 2 0.807 -11.039 1.926 1.00 1.47 C ATOM 17 O GLN 2 1.334 -10.085 2.497 1.00 1.47 O ATOM 18 CB GLN 2 0.434 -13.118 3.258 1.00 1.47 C ATOM 19 CG GLN 2 -0.443 -13.871 4.249 1.00 1.47 C ATOM 20 CD GLN 2 0.231 -15.120 4.798 1.00 1.47 C ATOM 21 OE1 GLN 2 1.103 -15.711 4.154 1.00 1.47 O ATOM 22 NE2 GLN 2 -0.172 -15.529 5.998 1.00 1.47 N ATOM 31 N GLU 3 1.077 -11.344 0.658 1.00 1.23 N ATOM 32 CA GLU 3 2.078 -10.566 -0.055 1.00 1.23 C ATOM 33 C GLU 3 1.598 -9.134 -0.265 1.00 1.23 C ATOM 34 O GLU 3 2.384 -8.187 -0.139 1.00 1.23 O ATOM 35 CB GLU 3 2.402 -11.208 -1.407 1.00 1.23 C ATOM 36 CG GLU 3 3.151 -12.547 -1.328 1.00 1.23 C ATOM 37 CD GLU 3 4.523 -12.430 -0.699 1.00 1.23 C ATOM 38 OE1 GLU 3 5.283 -11.588 -1.121 1.00 1.23 O ATOM 39 OE2 GLU 3 4.811 -13.187 0.215 1.00 1.23 O ATOM 46 N THR 4 0.299 -8.950 -0.526 1.00 1.08 N ATOM 47 CA THR 4 -0.178 -7.596 -0.729 1.00 1.08 C ATOM 48 C THR 4 -0.084 -6.840 0.588 1.00 1.08 C ATOM 49 O THR 4 0.353 -5.687 0.621 1.00 1.08 O ATOM 50 CB THR 4 -1.614 -7.587 -1.224 1.00 1.08 C ATOM 51 OG1 THR 4 -1.679 -8.346 -2.398 1.00 1.08 O ATOM 52 CG2 THR 4 -2.021 -6.172 -1.577 1.00 1.08 C ATOM 60 N ARG 5 -0.477 -7.494 1.687 1.00 1.03 N ATOM 61 CA ARG 5 -0.468 -6.843 2.991 1.00 1.03 C ATOM 62 C ARG 5 0.954 -6.465 3.424 1.00 1.03 C ATOM 63 O ARG 5 1.170 -5.387 3.996 1.00 1.03 O ATOM 64 CB ARG 5 -1.110 -7.739 4.040 1.00 1.03 C ATOM 65 CG ARG 5 -2.631 -7.921 3.892 1.00 1.03 C ATOM 66 CD ARG 5 -3.190 -8.827 4.939 1.00 1.03 C ATOM 67 NE ARG 5 -4.634 -9.058 4.775 1.00 1.03 N ATOM 68 CZ ARG 5 -5.415 -9.731 5.642 1.00 1.03 C ATOM 69 NH1 ARG 5 -4.919 -10.229 6.755 1.00 1.03 N ATOM 70 NH2 ARG 5 -6.689 -9.881 5.347 1.00 1.03 N ATOM 84 N LYS 6 1.945 -7.317 3.133 1.00 0.78 N ATOM 85 CA LYS 6 3.320 -6.971 3.486 1.00 0.78 C ATOM 86 C LYS 6 3.790 -5.758 2.686 1.00 0.78 C ATOM 87 O LYS 6 4.437 -4.858 3.233 1.00 0.78 O ATOM 88 CB LYS 6 4.261 -8.154 3.267 1.00 0.78 C ATOM 89 CG LYS 6 4.111 -9.294 4.283 1.00 0.78 C ATOM 90 CD LYS 6 5.201 -10.335 4.090 1.00 0.78 C ATOM 91 CE LYS 6 4.964 -11.114 2.809 1.00 0.78 C ATOM 92 NZ LYS 6 5.959 -12.209 2.605 1.00 0.78 N ATOM 106 N LYS 7 3.411 -5.694 1.406 1.00 0.61 N ATOM 107 CA LYS 7 3.791 -4.557 0.578 1.00 0.61 C ATOM 108 C LYS 7 3.037 -3.302 1.038 1.00 0.61 C ATOM 109 O LYS 7 3.582 -2.197 1.008 1.00 0.61 O ATOM 110 CB LYS 7 3.557 -4.863 -0.896 1.00 0.61 C ATOM 111 CG LYS 7 4.504 -5.885 -1.503 1.00 0.61 C ATOM 112 CD LYS 7 4.231 -6.041 -2.989 1.00 0.61 C ATOM 113 CE LYS 7 5.212 -6.988 -3.658 1.00 0.61 C ATOM 114 NZ LYS 7 4.939 -8.411 -3.311 1.00 0.61 N ATOM 128 N CYS 8 1.797 -3.472 1.517 1.00 0.42 N ATOM 129 CA CYS 8 1.039 -2.341 2.037 1.00 0.42 C ATOM 130 C CYS 8 1.762 -1.789 3.250 1.00 0.42 C ATOM 131 O CYS 8 1.880 -0.575 3.402 1.00 0.42 O ATOM 132 CB CYS 8 -0.368 -2.739 2.464 1.00 0.42 C ATOM 133 SG CYS 8 -1.432 -3.174 1.138 1.00 0.42 S ATOM 139 N THR 9 2.280 -2.681 4.102 1.00 0.00 N ATOM 140 CA THR 9 2.998 -2.258 5.294 1.00 0.00 C ATOM 141 C THR 9 4.214 -1.433 4.895 1.00 0.00 C ATOM 142 O THR 9 4.464 -0.369 5.472 1.00 0.00 O ATOM 143 CB THR 9 3.432 -3.457 6.151 1.00 0.00 C ATOM 144 OG1 THR 9 2.268 -4.174 6.595 1.00 0.00 O ATOM 145 CG2 THR 9 4.226 -2.967 7.344 1.00 0.00 C ATOM 153 N GLU 10 4.959 -1.900 3.889 1.00 0.00 N ATOM 154 CA GLU 10 6.115 -1.146 3.413 1.00 0.00 C ATOM 155 C GLU 10 5.685 0.272 3.035 1.00 0.00 C ATOM 156 O GLU 10 6.315 1.256 3.446 1.00 0.00 O ATOM 157 CB GLU 10 6.749 -1.822 2.189 1.00 0.00 C ATOM 158 CG GLU 10 7.993 -1.124 1.651 1.00 0.00 C ATOM 159 CD GLU 10 8.547 -1.755 0.380 1.00 0.00 C ATOM 160 OE1 GLU 10 8.039 -2.764 -0.042 1.00 0.00 O ATOM 161 OE2 GLU 10 9.475 -1.196 -0.182 1.00 0.00 O ATOM 168 N MET 11 4.585 0.378 2.280 1.00 0.00 N ATOM 169 CA MET 11 4.086 1.674 1.843 1.00 0.00 C ATOM 170 C MET 11 3.562 2.526 2.980 1.00 0.00 C ATOM 171 O MET 11 3.723 3.742 2.952 1.00 0.00 O ATOM 172 CB MET 11 3.015 1.474 0.798 1.00 0.00 C ATOM 173 CG MET 11 3.549 0.897 -0.446 1.00 0.00 C ATOM 174 SD MET 11 4.766 1.957 -1.204 1.00 0.00 S ATOM 175 CE MET 11 6.287 1.335 -0.559 1.00 0.00 C ATOM 185 N LYS 12 2.967 1.917 3.999 1.00 0.00 N ATOM 186 CA LYS 12 2.479 2.700 5.126 1.00 0.00 C ATOM 187 C LYS 12 3.653 3.287 5.899 1.00 0.00 C ATOM 188 O LYS 12 3.567 4.393 6.428 1.00 0.00 O ATOM 189 CB LYS 12 1.581 1.862 6.033 1.00 0.00 C ATOM 190 CG LYS 12 0.217 1.530 5.421 1.00 0.00 C ATOM 191 CD LYS 12 -0.624 0.671 6.343 1.00 0.00 C ATOM 192 CE LYS 12 -1.967 0.329 5.708 1.00 0.00 C ATOM 193 NZ LYS 12 -2.807 -0.522 6.608 1.00 0.00 N ATOM 207 N LYS 13 4.755 2.543 5.988 1.00 0.00 N ATOM 208 CA LYS 13 5.937 3.039 6.679 1.00 0.00 C ATOM 209 C LYS 13 6.649 4.135 5.874 1.00 0.00 C ATOM 210 O LYS 13 7.124 5.132 6.440 1.00 0.00 O ATOM 211 CB LYS 13 6.898 1.888 6.985 1.00 0.00 C ATOM 212 CG LYS 13 6.403 0.922 8.072 1.00 0.00 C ATOM 213 CD LYS 13 7.404 -0.201 8.316 1.00 0.00 C ATOM 214 CE LYS 13 6.947 -1.119 9.443 1.00 0.00 C ATOM 215 NZ LYS 13 7.902 -2.244 9.665 1.00 0.00 N ATOM 229 N LYS 14 6.725 3.961 4.546 1.00 0.81 N ATOM 230 CA LYS 14 7.380 4.939 3.674 1.00 0.81 C ATOM 231 C LYS 14 6.537 6.190 3.409 1.00 0.81 C ATOM 232 O LYS 14 7.077 7.288 3.258 1.00 0.81 O ATOM 233 CB LYS 14 7.813 4.268 2.373 1.00 0.81 C ATOM 234 CG LYS 14 8.985 3.309 2.592 1.00 0.81 C ATOM 235 CD LYS 14 9.455 2.615 1.332 1.00 0.81 C ATOM 236 CE LYS 14 10.690 1.764 1.635 1.00 0.81 C ATOM 237 NZ LYS 14 11.152 0.975 0.465 1.00 0.81 N ATOM 251 N PHE 15 5.221 6.036 3.394 1.00 1.13 N ATOM 252 CA PHE 15 4.297 7.123 3.128 1.00 1.13 C ATOM 253 C PHE 15 3.294 7.240 4.280 1.00 1.13 C ATOM 254 O PHE 15 2.094 7.020 4.111 1.00 1.13 O ATOM 255 CB PHE 15 3.561 6.867 1.812 1.00 1.13 C ATOM 256 CG PHE 15 4.408 6.752 0.589 1.00 1.13 C ATOM 257 CD1 PHE 15 4.826 5.524 0.106 1.00 1.13 C ATOM 258 CD2 PHE 15 4.762 7.890 -0.103 1.00 1.13 C ATOM 259 CE1 PHE 15 5.594 5.454 -1.044 1.00 1.13 C ATOM 260 CE2 PHE 15 5.520 7.817 -1.245 1.00 1.13 C ATOM 261 CZ PHE 15 5.936 6.595 -1.714 1.00 1.13 C ATOM 271 N LYS 16 3.799 7.642 5.446 1.00 1.30 N ATOM 272 CA LYS 16 3.037 7.686 6.701 1.00 1.30 C ATOM 273 C LYS 16 1.806 8.592 6.683 1.00 1.30 C ATOM 274 O LYS 16 0.858 8.378 7.437 1.00 1.30 O ATOM 275 CB LYS 16 3.953 8.131 7.841 1.00 1.30 C ATOM 276 CG LYS 16 5.000 7.098 8.244 1.00 1.30 C ATOM 277 CD LYS 16 5.827 7.572 9.433 1.00 1.30 C ATOM 278 CE LYS 16 6.803 6.497 9.922 1.00 1.30 C ATOM 279 NZ LYS 16 7.888 6.217 8.933 1.00 1.30 N ATOM 293 N ASN 17 1.841 9.624 5.848 1.00 1.18 N ATOM 294 CA ASN 17 0.748 10.585 5.758 1.00 1.18 C ATOM 295 C ASN 17 -0.137 10.343 4.535 1.00 1.18 C ATOM 296 O ASN 17 -0.929 11.213 4.159 1.00 1.18 O ATOM 297 CB ASN 17 1.301 11.997 5.726 1.00 1.18 C ATOM 298 CG ASN 17 1.958 12.397 7.027 1.00 1.18 C ATOM 299 OD1 ASN 17 1.466 12.076 8.115 1.00 1.18 O ATOM 300 ND2 ASN 17 3.061 13.097 6.931 1.00 1.18 N ATOM 307 N CYS 18 0.003 9.180 3.904 1.00 1.16 N ATOM 308 CA CYS 18 -0.740 8.877 2.687 1.00 1.16 C ATOM 309 C CYS 18 -1.719 7.731 2.851 1.00 1.16 C ATOM 310 O CYS 18 -1.643 6.960 3.810 1.00 1.16 O ATOM 311 CB CYS 18 0.247 8.554 1.604 1.00 1.16 C ATOM 312 SG CYS 18 1.380 9.923 1.348 1.00 1.16 S ATOM 318 N GLU 19 -2.676 7.630 1.929 1.00 1.06 N ATOM 319 CA GLU 19 -3.629 6.532 2.020 1.00 1.06 C ATOM 320 C GLU 19 -3.089 5.311 1.298 1.00 1.06 C ATOM 321 O GLU 19 -2.638 5.407 0.155 1.00 1.06 O ATOM 322 CB GLU 19 -5.000 6.926 1.460 1.00 1.06 C ATOM 323 CG GLU 19 -6.070 5.847 1.613 1.00 1.06 C ATOM 324 CD GLU 19 -7.428 6.245 1.080 1.00 1.06 C ATOM 325 OE1 GLU 19 -7.558 7.307 0.520 1.00 1.06 O ATOM 326 OE2 GLU 19 -8.349 5.470 1.245 1.00 1.06 O ATOM 333 N VAL 20 -3.111 4.166 1.971 1.00 0.73 N ATOM 334 CA VAL 20 -2.633 2.928 1.366 1.00 0.73 C ATOM 335 C VAL 20 -3.729 1.863 1.426 1.00 0.73 C ATOM 336 O VAL 20 -4.298 1.620 2.494 1.00 0.73 O ATOM 337 CB VAL 20 -1.360 2.422 2.079 1.00 0.73 C ATOM 338 CG1 VAL 20 -0.883 1.116 1.434 1.00 0.73 C ATOM 339 CG2 VAL 20 -0.261 3.497 2.016 1.00 0.73 C ATOM 349 N ARG 21 -4.032 1.235 0.286 1.00 0.61 N ATOM 350 CA ARG 21 -5.070 0.206 0.239 1.00 0.61 C ATOM 351 C ARG 21 -4.546 -1.148 -0.237 1.00 0.61 C ATOM 352 O ARG 21 -3.648 -1.230 -1.082 1.00 0.61 O ATOM 353 CB ARG 21 -6.225 0.637 -0.657 1.00 0.61 C ATOM 354 CG ARG 21 -7.006 1.857 -0.168 1.00 0.61 C ATOM 355 CD ARG 21 -8.177 2.168 -1.049 1.00 0.61 C ATOM 356 NE ARG 21 -8.911 3.338 -0.581 1.00 0.61 N ATOM 357 CZ ARG 21 -10.119 3.731 -1.015 1.00 0.61 C ATOM 358 NH1 ARG 21 -10.767 3.046 -1.935 1.00 0.61 N ATOM 359 NH2 ARG 21 -10.643 4.819 -0.488 1.00 0.61 N ATOM 373 N CYS 22 -5.158 -2.217 0.289 1.00 0.78 N ATOM 374 CA CYS 22 -4.794 -3.595 -0.048 1.00 0.78 C ATOM 375 C CYS 22 -5.778 -4.282 -0.993 1.00 0.78 C ATOM 376 O CYS 22 -6.841 -4.755 -0.578 1.00 0.78 O ATOM 377 CB CYS 22 -4.737 -4.416 1.250 1.00 0.78 C ATOM 378 SG CYS 22 -4.203 -6.117 1.069 1.00 0.78 S ATOM 384 N ASP 23 -5.437 -4.366 -2.274 1.00 1.19 N ATOM 385 CA ASP 23 -6.362 -4.978 -3.209 1.00 1.19 C ATOM 386 C ASP 23 -6.151 -6.462 -3.283 1.00 1.19 C ATOM 387 O ASP 23 -5.491 -6.971 -4.202 1.00 1.19 O ATOM 388 CB ASP 23 -6.245 -4.408 -4.612 1.00 1.19 C ATOM 389 CG ASP 23 -7.289 -5.021 -5.548 1.00 1.19 C ATOM 390 OD1 ASP 23 -7.890 -6.049 -5.188 1.00 1.19 O ATOM 391 OD2 ASP 23 -7.453 -4.519 -6.634 1.00 1.19 O ATOM 396 N GLU 24 -6.820 -7.156 -2.383 1.00 1.76 N ATOM 397 CA GLU 24 -6.687 -8.594 -2.248 1.00 1.76 C ATOM 398 C GLU 24 -7.230 -9.364 -3.461 1.00 1.76 C ATOM 399 O GLU 24 -6.972 -10.561 -3.586 1.00 1.76 O ATOM 400 CB GLU 24 -7.376 -9.067 -0.962 1.00 1.76 C ATOM 401 CG GLU 24 -6.703 -8.546 0.307 1.00 1.76 C ATOM 402 CD GLU 24 -7.304 -9.051 1.609 1.00 1.76 C ATOM 403 OE1 GLU 24 -8.272 -9.765 1.566 1.00 1.76 O ATOM 404 OE2 GLU 24 -6.766 -8.724 2.652 1.00 1.76 O ATOM 411 N SER 25 -8.033 -8.708 -4.320 1.00 2.07 N ATOM 412 CA SER 25 -8.593 -9.409 -5.470 1.00 2.07 C ATOM 413 C SER 25 -7.639 -9.364 -6.667 1.00 2.07 C ATOM 414 O SER 25 -7.746 -10.193 -7.575 1.00 2.07 O ATOM 415 CB SER 25 -9.955 -8.841 -5.853 1.00 2.07 C ATOM 416 OG SER 25 -9.872 -7.540 -6.383 1.00 2.07 O ATOM 422 N ASN 26 -6.704 -8.402 -6.670 1.00 2.06 N ATOM 423 CA ASN 26 -5.742 -8.289 -7.765 1.00 2.06 C ATOM 424 C ASN 26 -4.311 -8.338 -7.247 1.00 2.06 C ATOM 425 O ASN 26 -3.359 -8.201 -8.015 1.00 2.06 O ATOM 426 CB ASN 26 -5.955 -7.020 -8.581 1.00 2.06 C ATOM 427 CG ASN 26 -7.266 -7.001 -9.350 1.00 2.06 C ATOM 428 OD1 ASN 26 -7.408 -7.700 -10.365 1.00 2.06 O ATOM 429 ND2 ASN 26 -8.207 -6.209 -8.903 1.00 2.06 N ATOM 436 N HIS 27 -4.165 -8.564 -5.946 1.00 1.67 N ATOM 437 CA HIS 27 -2.875 -8.655 -5.273 1.00 1.67 C ATOM 438 C HIS 27 -2.034 -7.400 -5.460 1.00 1.67 C ATOM 439 O HIS 27 -0.819 -7.482 -5.648 1.00 1.67 O ATOM 440 CB HIS 27 -2.083 -9.868 -5.771 1.00 1.67 C ATOM 441 CG HIS 27 -2.789 -11.151 -5.547 1.00 1.67 C ATOM 442 ND1 HIS 27 -2.918 -11.729 -4.297 1.00 1.67 N ATOM 443 CD2 HIS 27 -3.441 -11.965 -6.411 1.00 1.67 C ATOM 444 CE1 HIS 27 -3.617 -12.852 -4.412 1.00 1.67 C ATOM 445 NE2 HIS 27 -3.942 -13.014 -5.682 1.00 1.67 N ATOM 453 N CYS 28 -2.687 -6.245 -5.412 1.00 1.23 N ATOM 454 CA CYS 28 -1.984 -4.985 -5.613 1.00 1.23 C ATOM 455 C CYS 28 -2.074 -4.025 -4.434 1.00 1.23 C ATOM 456 O CYS 28 -3.049 -4.017 -3.680 1.00 1.23 O ATOM 457 CB CYS 28 -2.522 -4.287 -6.859 1.00 1.23 C ATOM 458 SG CYS 28 -2.298 -5.231 -8.395 1.00 1.23 S ATOM 464 N VAL 29 -1.081 -3.161 -4.323 1.00 0.83 N ATOM 465 CA VAL 29 -1.093 -2.131 -3.298 1.00 0.83 C ATOM 466 C VAL 29 -1.275 -0.794 -3.951 1.00 0.83 C ATOM 467 O VAL 29 -0.558 -0.465 -4.896 1.00 0.83 O ATOM 468 CB VAL 29 0.219 -2.082 -2.541 1.00 0.83 C ATOM 469 CG1 VAL 29 0.181 -0.990 -1.472 1.00 0.83 C ATOM 470 CG2 VAL 29 0.517 -3.406 -1.991 1.00 0.83 C ATOM 480 N GLU 30 -2.238 -0.030 -3.465 1.00 0.34 N ATOM 481 CA GLU 30 -2.504 1.296 -4.009 1.00 0.34 C ATOM 482 C GLU 30 -2.105 2.382 -3.028 1.00 0.34 C ATOM 483 O GLU 30 -2.559 2.371 -1.884 1.00 0.34 O ATOM 484 CB GLU 30 -3.992 1.435 -4.346 1.00 0.34 C ATOM 485 CG GLU 30 -4.397 2.784 -4.916 1.00 0.34 C ATOM 486 CD GLU 30 -5.871 2.863 -5.287 1.00 0.34 C ATOM 487 OE1 GLU 30 -6.552 1.875 -5.177 1.00 0.34 O ATOM 488 OE2 GLU 30 -6.317 3.930 -5.668 1.00 0.34 O ATOM 495 N VAL 31 -1.266 3.327 -3.467 1.00 0.00 N ATOM 496 CA VAL 31 -0.867 4.427 -2.588 1.00 0.00 C ATOM 497 C VAL 31 -1.301 5.762 -3.184 1.00 0.00 C ATOM 498 O VAL 31 -0.957 6.086 -4.324 1.00 0.00 O ATOM 499 CB VAL 31 0.653 4.471 -2.403 1.00 0.00 C ATOM 500 CG1 VAL 31 1.052 5.633 -1.444 1.00 0.00 C ATOM 501 CG2 VAL 31 1.152 3.132 -1.940 1.00 0.00 C ATOM 511 N ARG 32 -2.025 6.552 -2.391 1.00 0.37 N ATOM 512 CA ARG 32 -2.507 7.873 -2.802 1.00 0.37 C ATOM 513 C ARG 32 -1.728 8.944 -2.042 1.00 0.37 C ATOM 514 O ARG 32 -1.936 9.169 -0.840 1.00 0.37 O ATOM 515 CB ARG 32 -3.994 7.997 -2.551 1.00 0.37 C ATOM 516 CG ARG 32 -4.831 6.992 -3.329 1.00 0.37 C ATOM 517 CD ARG 32 -6.283 7.113 -3.050 1.00 0.37 C ATOM 518 NE ARG 32 -7.044 6.139 -3.816 1.00 0.37 N ATOM 519 CZ ARG 32 -8.376 6.043 -3.853 1.00 0.37 C ATOM 520 NH1 ARG 32 -9.134 6.866 -3.161 1.00 0.37 N ATOM 521 NH2 ARG 32 -8.904 5.103 -4.608 1.00 0.37 N ATOM 535 N CYS 33 -0.782 9.569 -2.751 1.00 0.56 N ATOM 536 CA CYS 33 0.217 10.450 -2.145 1.00 0.56 C ATOM 537 C CYS 33 0.415 11.827 -2.763 1.00 0.56 C ATOM 538 O CYS 33 1.015 11.951 -3.825 1.00 0.56 O ATOM 539 CB CYS 33 1.569 9.750 -2.254 1.00 0.56 C ATOM 540 SG CYS 33 2.963 10.697 -1.649 1.00 0.56 S ATOM 546 N SER 34 -0.062 12.875 -2.094 1.00 0.94 N ATOM 547 CA SER 34 0.097 14.243 -2.604 1.00 0.94 C ATOM 548 C SER 34 -0.306 14.382 -4.075 1.00 0.94 C ATOM 549 O SER 34 0.443 14.935 -4.878 1.00 0.94 O ATOM 550 CB SER 34 1.535 14.699 -2.431 1.00 0.94 C ATOM 551 OG SER 34 1.903 14.695 -1.079 1.00 0.94 O ATOM 557 N ASP 35 -1.475 13.838 -4.414 1.00 1.18 N ATOM 558 CA ASP 35 -2.050 13.824 -5.764 1.00 1.18 C ATOM 559 C ASP 35 -1.291 12.953 -6.787 1.00 1.18 C ATOM 560 O ASP 35 -1.645 12.944 -7.970 1.00 1.18 O ATOM 561 CB ASP 35 -2.199 15.253 -6.311 1.00 1.18 C ATOM 562 CG ASP 35 -3.157 16.105 -5.472 1.00 1.18 C ATOM 563 OD1 ASP 35 -4.193 15.604 -5.096 1.00 1.18 O ATOM 564 OD2 ASP 35 -2.837 17.236 -5.200 1.00 1.18 O ATOM 569 N THR 36 -0.307 12.170 -6.336 1.00 1.19 N ATOM 570 CA THR 36 0.385 11.223 -7.198 1.00 1.19 C ATOM 571 C THR 36 -0.069 9.823 -6.799 1.00 1.19 C ATOM 572 O THR 36 -0.860 9.674 -5.856 1.00 1.19 O ATOM 573 CB THR 36 1.923 11.357 -7.105 1.00 1.19 C ATOM 574 OG1 THR 36 2.384 10.945 -5.816 1.00 1.19 O ATOM 575 CG2 THR 36 2.310 12.805 -7.316 1.00 1.19 C ATOM 583 N LYS 37 0.385 8.808 -7.530 1.00 1.31 N ATOM 584 CA LYS 37 -0.075 7.453 -7.262 1.00 1.31 C ATOM 585 C LYS 37 0.997 6.400 -7.489 1.00 1.31 C ATOM 586 O LYS 37 1.735 6.452 -8.477 1.00 1.31 O ATOM 587 CB LYS 37 -1.287 7.157 -8.155 1.00 1.31 C ATOM 588 CG LYS 37 -1.978 5.819 -7.928 1.00 1.31 C ATOM 589 CD LYS 37 -3.213 5.696 -8.832 1.00 1.31 C ATOM 590 CE LYS 37 -3.947 4.387 -8.608 1.00 1.31 C ATOM 591 NZ LYS 37 -5.135 4.255 -9.494 1.00 1.31 N ATOM 605 N TYR 38 1.055 5.425 -6.581 1.00 1.18 N ATOM 606 CA TYR 38 1.994 4.317 -6.740 1.00 1.18 C ATOM 607 C TYR 38 1.229 3.000 -6.727 1.00 1.18 C ATOM 608 O TYR 38 0.240 2.857 -5.995 1.00 1.18 O ATOM 609 CB TYR 38 3.021 4.283 -5.598 1.00 1.18 C ATOM 610 CG TYR 38 3.816 5.554 -5.416 1.00 1.18 C ATOM 611 CD1 TYR 38 3.290 6.594 -4.645 1.00 1.18 C ATOM 612 CD2 TYR 38 5.064 5.692 -5.998 1.00 1.18 C ATOM 613 CE1 TYR 38 4.014 7.750 -4.474 1.00 1.18 C ATOM 614 CE2 TYR 38 5.784 6.858 -5.817 1.00 1.18 C ATOM 615 CZ TYR 38 5.256 7.883 -5.059 1.00 1.18 C ATOM 616 OH TYR 38 5.967 9.046 -4.877 1.00 1.18 O ATOM 626 N THR 39 1.699 2.026 -7.511 1.00 1.17 N ATOM 627 CA THR 39 1.108 0.690 -7.478 1.00 1.17 C ATOM 628 C THR 39 2.178 -0.381 -7.322 1.00 1.17 C ATOM 629 O THR 39 3.178 -0.382 -8.044 1.00 1.17 O ATOM 630 CB THR 39 0.249 0.394 -8.722 1.00 1.17 C ATOM 631 OG1 THR 39 -0.804 1.363 -8.811 1.00 1.17 O ATOM 632 CG2 THR 39 -0.378 -1.019 -8.605 1.00 1.17 C ATOM 640 N LEU 40 1.959 -1.296 -6.379 1.00 1.23 N ATOM 641 CA LEU 40 2.909 -2.383 -6.147 1.00 1.23 C ATOM 642 C LEU 40 2.240 -3.736 -6.316 1.00 1.23 C ATOM 643 O LEU 40 1.071 -3.904 -5.970 1.00 1.23 O ATOM 644 CB LEU 40 3.495 -2.319 -4.735 1.00 1.23 C ATOM 645 CG LEU 40 4.230 -1.050 -4.352 1.00 1.23 C ATOM 646 CD1 LEU 40 3.219 0.067 -3.985 1.00 1.23 C ATOM 647 CD2 LEU 40 5.123 -1.362 -3.161 1.00 1.23 C ATOM 659 N CYS 41 2.982 -4.714 -6.819 1.00 1.48 N ATOM 660 CA CYS 41 2.447 -6.066 -6.956 1.00 1.48 C ATOM 661 C CYS 41 3.589 -7.069 -7.102 1.00 1.48 C ATOM 662 O CYS 41 3.686 -8.013 -6.315 1.00 1.48 O ATOM 663 OXT CYS 41 4.600 -6.677 -7.682 1.00 1.48 O ATOM 664 CB CYS 41 1.510 -6.162 -8.165 1.00 1.48 C ATOM 665 SG CYS 41 0.688 -7.768 -8.356 1.00 1.48 S TER END