####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS044_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.97 2.97 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 1 - 24 1.96 3.97 LONGEST_CONTINUOUS_SEGMENT: 24 2 - 25 1.90 4.04 LCS_AVERAGE: 49.67 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.95 3.90 LCS_AVERAGE: 25.34 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 24 41 3 3 3 7 11 19 25 30 36 38 38 40 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 16 24 41 8 13 17 21 24 26 29 35 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 16 24 41 11 13 17 21 24 27 32 35 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 16 24 41 11 13 17 21 24 29 33 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 16 24 41 11 13 17 21 24 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 16 24 41 11 13 17 21 24 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 16 24 41 11 13 17 21 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 16 24 41 11 13 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 16 24 41 11 13 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 16 24 41 11 13 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 16 24 41 11 13 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 16 24 41 11 13 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 16 24 41 11 13 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 16 24 41 10 13 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 16 24 41 5 13 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 16 24 41 3 5 11 21 24 29 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 16 24 41 4 10 17 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 7 24 41 6 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 7 24 41 5 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 7 24 41 4 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 7 24 41 5 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 24 41 4 12 18 21 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 24 41 4 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 24 41 6 8 16 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 24 41 4 4 6 13 20 29 32 35 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 4 10 41 4 4 5 7 8 11 15 21 31 35 39 40 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 4 15 41 3 4 11 21 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 4 15 41 3 4 5 16 26 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 9 15 41 5 12 16 21 24 29 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 9 15 41 5 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 9 15 41 5 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 9 15 41 6 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 9 15 41 6 10 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 9 15 41 5 12 16 21 24 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 9 15 41 3 10 14 21 23 28 32 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 9 15 41 3 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 9 15 41 5 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 15 41 4 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 15 41 3 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 15 41 3 10 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 15 41 3 12 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 58.34 ( 25.34 49.67 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 13 18 23 27 30 34 36 38 39 39 40 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 31.71 43.90 56.10 65.85 73.17 82.93 87.80 92.68 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.44 0.94 1.35 1.59 1.81 2.11 2.26 2.51 2.63 2.63 2.81 2.97 2.97 2.97 2.97 2.97 2.97 2.97 2.97 GDT RMS_ALL_AT 4.66 4.71 4.41 3.68 3.50 3.37 3.19 3.15 3.06 3.01 3.01 3.00 2.97 2.97 2.97 2.97 2.97 2.97 2.97 2.97 # Checking swapping # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 7.922 0 0.577 0.887 10.161 0.000 0.000 10.161 LGA Q 2 Q 2 6.240 0 0.297 1.234 6.786 0.455 0.202 5.131 LGA E 3 E 3 5.412 0 0.053 1.495 7.268 1.818 0.808 5.829 LGA T 4 T 4 4.024 0 0.036 1.137 5.049 13.182 12.208 5.049 LGA R 5 R 5 3.181 0 0.022 1.498 6.429 18.636 11.570 4.297 LGA K 6 K 6 3.396 0 0.060 0.615 4.669 23.636 14.545 3.199 LGA K 7 K 7 2.391 0 0.080 0.632 6.116 41.818 23.434 6.116 LGA C 8 C 8 0.814 0 0.037 0.835 2.332 77.727 71.818 2.332 LGA T 9 T 9 1.669 0 0.018 0.056 2.797 61.818 48.571 2.797 LGA E 10 E 10 1.276 0 0.045 0.595 3.990 73.636 44.040 3.783 LGA M 11 M 11 0.701 0 0.094 0.857 2.662 82.273 67.273 1.186 LGA K 12 K 12 1.603 0 0.093 0.925 6.643 55.455 36.566 6.643 LGA K 13 K 13 1.575 0 0.041 0.533 5.070 58.182 35.960 3.908 LGA K 14 K 14 0.953 0 0.038 0.583 2.928 66.364 55.758 2.924 LGA F 15 F 15 2.144 0 0.363 0.826 4.329 30.455 39.174 3.308 LGA K 16 K 16 3.458 0 0.223 1.410 10.065 25.000 11.111 10.065 LGA N 17 N 17 1.763 0 0.288 1.283 5.501 44.545 30.000 5.241 LGA C 18 C 18 1.191 0 0.040 0.135 1.325 69.545 68.182 1.180 LGA E 19 E 19 1.802 0 0.329 0.566 2.940 58.182 46.061 2.940 LGA V 20 V 20 1.884 0 0.082 0.102 2.335 44.545 41.818 2.256 LGA R 21 R 21 2.450 0 0.120 1.574 4.633 32.727 33.058 3.593 LGA C 22 C 22 3.329 0 0.067 0.180 4.453 22.727 16.970 4.453 LGA D 23 D 23 2.428 0 0.062 1.088 6.258 35.455 21.136 6.258 LGA E 24 E 24 1.462 0 0.060 0.989 3.266 40.455 46.263 3.017 LGA S 25 S 25 5.622 0 0.231 0.247 7.343 2.727 1.818 6.930 LGA N 26 N 26 7.825 0 0.242 1.091 13.409 0.000 0.000 9.848 LGA H 27 H 27 2.546 0 0.470 0.666 5.426 29.091 18.909 5.041 LGA C 28 C 28 2.769 0 0.073 0.089 7.843 26.818 17.879 7.843 LGA V 29 V 29 3.519 0 0.569 0.529 8.287 28.636 16.364 8.287 LGA E 30 E 30 1.336 0 0.028 0.472 2.120 61.818 60.808 1.490 LGA V 31 V 31 1.086 0 0.029 0.067 1.525 73.636 68.052 1.288 LGA R 32 R 32 0.737 0 0.030 1.130 3.113 77.727 56.033 2.586 LGA C 33 C 33 1.057 0 0.497 0.559 2.134 62.727 63.636 1.252 LGA S 34 S 34 3.038 0 0.268 0.660 4.359 20.000 16.970 3.606 LGA D 35 D 35 3.791 0 0.074 0.695 5.904 16.818 8.636 5.904 LGA T 36 T 36 2.212 0 0.143 1.145 3.799 55.455 42.597 3.799 LGA K 37 K 37 1.165 0 0.124 1.544 5.223 55.000 42.828 5.223 LGA Y 38 Y 38 1.389 0 0.025 1.361 6.096 58.182 38.333 6.096 LGA T 39 T 39 2.358 0 0.151 0.159 3.437 35.455 29.351 3.239 LGA L 40 L 40 2.093 0 0.246 0.933 4.141 27.273 31.364 2.065 LGA C 41 C 41 1.728 1 0.395 0.493 4.647 43.182 30.390 4.647 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 2.974 2.957 3.645 40.322 32.207 16.851 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 36 2.26 68.902 68.409 1.525 LGA_LOCAL RMSD: 2.260 Number of atoms: 36 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.154 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.974 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.678691 * X + 0.068994 * Y + -0.731176 * Z + -0.699398 Y_new = -0.729428 * X + -0.052604 * Y + -0.682032 * Z + 67.561867 Z_new = -0.085519 * X + 0.996229 * Y + 0.014624 * Z + -42.752014 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.821414 0.085624 1.556118 [DEG: -47.0636 4.9059 89.1590 ] ZXZ: -0.820159 1.556172 -0.085633 [DEG: -46.9916 89.1621 -4.9064 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS044_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 36 2.26 68.409 2.97 REMARK ---------------------------------------------------------- MOLECULE T0955TS044_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -5.333 -12.886 5.259 1.00 0.90 ATOM 2 CA SER 1 -4.911 -11.594 4.713 1.00 0.90 ATOM 4 CB SER 1 -6.152 -10.788 4.301 1.00 0.90 ATOM 7 OG SER 1 -5.829 -9.773 3.370 1.00 0.90 ATOM 9 C SER 1 -3.964 -10.853 5.664 1.00 0.90 ATOM 10 O SER 1 -3.664 -9.674 5.482 1.00 0.90 ATOM 11 N GLN 2 -3.445 -11.545 6.687 1.00 0.92 ATOM 13 CA GLN 2 -2.446 -10.991 7.607 1.00 0.92 ATOM 15 CB GLN 2 -2.028 -12.042 8.657 1.00 0.92 ATOM 18 CG GLN 2 -3.155 -12.481 9.614 1.00 0.92 ATOM 21 CD GLN 2 -2.667 -13.440 10.716 1.00 0.92 ATOM 22 OE1 GLN 2 -1.521 -13.837 10.776 1.00 0.92 ATOM 23 NE2 GLN 2 -3.517 -13.841 11.634 1.00 0.92 ATOM 26 C GLN 2 -1.205 -10.457 6.863 1.00 0.92 ATOM 27 O GLN 2 -0.816 -9.310 7.072 1.00 0.92 ATOM 28 N GLU 3 -0.615 -11.258 5.962 1.00 0.42 ATOM 30 CA GLU 3 0.571 -10.827 5.208 1.00 0.42 ATOM 32 CB GLU 3 1.326 -12.016 4.587 1.00 0.42 ATOM 35 CG GLU 3 2.862 -11.826 4.579 1.00 0.42 ATOM 38 CD GLU 3 3.408 -11.023 3.391 1.00 0.42 ATOM 39 OE1 GLU 3 4.171 -10.046 3.586 1.00 0.42 ATOM 40 OE2 GLU 3 3.130 -11.416 2.240 1.00 0.42 ATOM 41 C GLU 3 0.268 -9.699 4.209 1.00 0.42 ATOM 42 O GLU 3 1.065 -8.781 4.085 1.00 0.42 ATOM 43 N THR 4 -0.927 -9.681 3.606 1.00 0.00 ATOM 45 CA THR 4 -1.404 -8.583 2.749 1.00 0.00 ATOM 47 CB THR 4 -2.773 -8.937 2.149 1.00 0.00 ATOM 49 CG2 THR 4 -3.265 -7.933 1.109 1.00 0.00 ATOM 53 OG1 THR 4 -2.707 -10.198 1.531 1.00 0.00 ATOM 55 C THR 4 -1.518 -7.262 3.503 1.00 0.00 ATOM 56 O THR 4 -0.977 -6.246 3.063 1.00 0.00 ATOM 57 N ARG 5 -2.204 -7.237 4.653 1.00 0.00 ATOM 59 CA ARG 5 -2.361 -6.020 5.467 1.00 0.00 ATOM 61 CB ARG 5 -3.435 -6.204 6.551 1.00 0.00 ATOM 64 CG ARG 5 -4.850 -5.814 6.085 1.00 0.00 ATOM 67 CD ARG 5 -5.516 -6.773 5.088 1.00 0.00 ATOM 70 NE ARG 5 -5.487 -6.324 3.674 1.00 0.00 ATOM 72 CZ ARG 5 -6.401 -6.669 2.774 1.00 0.00 ATOM 73 NH1 ARG 5 -6.370 -6.343 1.523 1.00 0.00 ATOM 76 NH2 ARG 5 -7.421 -7.405 3.072 1.00 0.00 ATOM 79 C ARG 5 -1.037 -5.521 6.049 1.00 0.00 ATOM 80 O ARG 5 -0.795 -4.310 6.092 1.00 0.00 ATOM 81 N LYS 6 -0.150 -6.447 6.424 1.00 0.00 ATOM 83 CA LYS 6 1.248 -6.175 6.785 1.00 0.00 ATOM 85 CB LYS 6 1.855 -7.505 7.282 1.00 0.00 ATOM 88 CG LYS 6 3.376 -7.613 7.449 1.00 0.00 ATOM 91 CD LYS 6 4.090 -7.822 6.104 1.00 0.00 ATOM 94 CE LYS 6 5.412 -8.565 6.263 1.00 0.00 ATOM 97 NZ LYS 6 6.076 -8.654 4.945 1.00 0.00 ATOM 101 C LYS 6 1.987 -5.481 5.636 1.00 0.00 ATOM 102 O LYS 6 2.510 -4.394 5.867 1.00 0.00 ATOM 103 N LYS 7 1.962 -6.009 4.404 1.00 0.00 ATOM 105 CA LYS 7 2.569 -5.355 3.228 1.00 0.00 ATOM 107 CB LYS 7 2.327 -6.136 1.925 1.00 0.00 ATOM 110 CG LYS 7 3.307 -7.281 1.652 1.00 0.00 ATOM 113 CD LYS 7 3.378 -7.495 0.130 1.00 0.00 ATOM 116 CE LYS 7 4.212 -8.709 -0.274 1.00 0.00 ATOM 119 NZ LYS 7 3.497 -9.953 0.064 1.00 0.00 ATOM 123 C LYS 7 2.021 -3.943 3.002 1.00 0.00 ATOM 124 O LYS 7 2.808 -3.014 2.824 1.00 0.00 ATOM 125 N CYS 8 0.695 -3.765 3.043 1.00 0.00 ATOM 127 CA CYS 8 0.104 -2.438 2.873 1.00 0.00 ATOM 129 CB CYS 8 -1.432 -2.478 2.935 1.00 0.00 ATOM 132 SG CYS 8 -2.314 -3.664 1.883 1.00 0.00 ATOM 133 C CYS 8 0.620 -1.441 3.924 1.00 0.00 ATOM 134 O CYS 8 0.949 -0.299 3.596 1.00 0.00 ATOM 135 N THR 9 0.728 -1.879 5.180 1.00 0.00 ATOM 137 CA THR 9 1.234 -1.073 6.299 1.00 0.00 ATOM 139 CB THR 9 1.032 -1.837 7.619 1.00 0.00 ATOM 141 CG2 THR 9 1.417 -1.011 8.847 1.00 0.00 ATOM 145 OG1 THR 9 -0.329 -2.163 7.786 1.00 0.00 ATOM 147 C THR 9 2.714 -0.695 6.146 1.00 0.00 ATOM 148 O THR 9 3.084 0.464 6.366 1.00 0.00 ATOM 149 N GLU 10 3.560 -1.639 5.725 1.00 0.00 ATOM 151 CA GLU 10 4.965 -1.374 5.397 1.00 0.00 ATOM 153 CB GLU 10 5.643 -2.617 4.804 1.00 0.00 ATOM 156 CG GLU 10 6.064 -3.782 5.700 1.00 0.00 ATOM 159 CD GLU 10 6.830 -4.813 4.844 1.00 0.00 ATOM 160 OE1 GLU 10 6.637 -6.033 5.032 1.00 0.00 ATOM 161 OE2 GLU 10 7.599 -4.369 3.954 1.00 0.00 ATOM 162 C GLU 10 5.096 -0.297 4.326 1.00 0.00 ATOM 163 O GLU 10 5.824 0.679 4.514 1.00 0.00 ATOM 164 N MET 11 4.415 -0.489 3.193 1.00 0.00 ATOM 166 CA MET 11 4.498 0.433 2.065 1.00 0.00 ATOM 168 CB MET 11 3.783 -0.146 0.838 1.00 0.00 ATOM 171 CG MET 11 4.466 -1.419 0.302 1.00 0.00 ATOM 174 SD MET 11 6.249 -1.316 -0.053 1.00 0.00 ATOM 175 CE MET 11 6.234 -0.174 -1.462 1.00 0.00 ATOM 179 C MET 11 3.993 1.820 2.446 1.00 0.00 ATOM 180 O MET 11 4.660 2.800 2.129 1.00 0.00 ATOM 181 N LYS 12 2.895 1.916 3.206 1.00 0.00 ATOM 183 CA LYS 12 2.377 3.176 3.757 1.00 0.00 ATOM 185 CB LYS 12 1.095 2.865 4.558 1.00 0.00 ATOM 188 CG LYS 12 0.617 4.048 5.412 1.00 0.00 ATOM 191 CD LYS 12 -0.906 4.029 5.592 1.00 0.00 ATOM 194 CE LYS 12 -1.441 5.249 6.361 1.00 0.00 ATOM 197 NZ LYS 12 -1.025 6.530 5.735 1.00 0.00 ATOM 201 C LYS 12 3.421 3.910 4.581 1.00 0.00 ATOM 202 O LYS 12 3.641 5.102 4.359 1.00 0.00 ATOM 203 N LYS 13 4.092 3.206 5.500 1.00 0.00 ATOM 205 CA LYS 13 5.163 3.807 6.307 1.00 0.00 ATOM 207 CB LYS 13 5.637 2.830 7.396 1.00 0.00 ATOM 210 CG LYS 13 4.582 2.688 8.507 1.00 0.00 ATOM 213 CD LYS 13 5.044 1.746 9.624 1.00 0.00 ATOM 216 CE LYS 13 3.933 1.617 10.676 1.00 0.00 ATOM 219 NZ LYS 13 4.375 0.841 11.864 1.00 0.00 ATOM 223 C LYS 13 6.322 4.312 5.441 1.00 0.00 ATOM 224 O LYS 13 6.702 5.470 5.588 1.00 0.00 ATOM 225 N LYS 14 6.827 3.502 4.502 1.00 0.00 ATOM 227 CA LYS 14 7.919 3.875 3.576 1.00 0.00 ATOM 229 CB LYS 14 8.232 2.696 2.630 1.00 0.00 ATOM 232 CG LYS 14 8.795 1.446 3.330 1.00 0.00 ATOM 235 CD LYS 14 8.685 0.213 2.414 1.00 0.00 ATOM 238 CE LYS 14 8.801 -1.093 3.211 1.00 0.00 ATOM 241 NZ LYS 14 8.351 -2.268 2.421 1.00 0.00 ATOM 245 C LYS 14 7.608 5.123 2.754 1.00 0.00 ATOM 246 O LYS 14 8.455 5.990 2.566 1.00 0.00 ATOM 247 N PHE 15 6.371 5.217 2.289 1.00 0.00 ATOM 249 CA PHE 15 5.845 6.344 1.533 1.00 0.00 ATOM 251 CB PHE 15 4.586 5.854 0.800 1.00 0.00 ATOM 254 CG PHE 15 4.772 5.427 -0.646 1.00 0.00 ATOM 255 CD1 PHE 15 4.639 4.078 -1.029 1.00 0.00 ATOM 257 CE1 PHE 15 4.731 3.712 -2.383 1.00 0.00 ATOM 259 CZ PHE 15 4.948 4.693 -3.366 1.00 0.00 ATOM 261 CE2 PHE 15 5.086 6.039 -2.991 1.00 0.00 ATOM 263 CD2 PHE 15 5.003 6.405 -1.635 1.00 0.00 ATOM 265 C PHE 15 5.526 7.580 2.384 1.00 0.00 ATOM 266 O PHE 15 5.409 8.666 1.824 1.00 0.00 ATOM 267 N LYS 16 5.424 7.449 3.716 1.00 0.00 ATOM 269 CA LYS 16 5.148 8.505 4.712 1.00 0.00 ATOM 271 CB LYS 16 6.133 9.696 4.586 1.00 0.00 ATOM 274 CG LYS 16 7.628 9.358 4.428 1.00 0.00 ATOM 277 CD LYS 16 8.410 10.543 3.827 1.00 0.00 ATOM 280 CE LYS 16 8.562 10.510 2.289 1.00 0.00 ATOM 283 NZ LYS 16 7.292 10.664 1.537 1.00 0.00 ATOM 287 C LYS 16 3.708 9.023 4.650 1.00 0.00 ATOM 288 O LYS 16 2.929 8.880 5.587 1.00 0.00 ATOM 289 N ASN 17 3.353 9.611 3.514 1.00 0.00 ATOM 291 CA ASN 17 2.236 10.537 3.357 1.00 0.00 ATOM 293 CB ASN 17 2.802 11.934 3.023 1.00 0.00 ATOM 296 CG ASN 17 3.664 11.973 1.776 1.00 0.00 ATOM 297 OD1 ASN 17 4.881 11.849 1.842 1.00 0.00 ATOM 298 ND2 ASN 17 3.042 12.123 0.637 1.00 0.00 ATOM 301 C ASN 17 1.156 9.988 2.419 1.00 0.00 ATOM 302 O ASN 17 0.459 10.727 1.729 1.00 0.00 ATOM 303 N CYS 18 1.023 8.658 2.419 1.00 0.00 ATOM 305 CA CYS 18 0.200 7.924 1.474 1.00 0.00 ATOM 307 CB CYS 18 1.085 7.376 0.344 1.00 0.00 ATOM 310 SG CYS 18 2.427 8.490 -0.184 1.00 0.00 ATOM 311 C CYS 18 -0.632 6.826 2.137 1.00 0.00 ATOM 312 O CYS 18 -0.242 6.229 3.135 1.00 0.00 ATOM 313 N GLU 19 -1.820 6.585 1.601 1.00 0.00 ATOM 315 CA GLU 19 -2.659 5.401 1.820 1.00 0.00 ATOM 317 CB GLU 19 -4.107 5.906 1.638 1.00 0.00 ATOM 320 CG GLU 19 -5.237 4.875 1.547 1.00 0.00 ATOM 323 CD GLU 19 -5.885 4.889 0.158 1.00 0.00 ATOM 324 OE1 GLU 19 -5.245 4.459 -0.821 1.00 0.00 ATOM 325 OE2 GLU 19 -7.085 5.239 0.035 1.00 0.00 ATOM 326 C GLU 19 -2.230 4.294 0.849 1.00 0.00 ATOM 327 O GLU 19 -1.617 4.584 -0.174 1.00 0.00 ATOM 328 N VAL 20 -2.475 3.024 1.189 1.00 0.00 ATOM 330 CA VAL 20 -2.042 1.879 0.381 1.00 0.00 ATOM 332 CB VAL 20 -0.703 1.299 0.882 1.00 0.00 ATOM 334 CG1 VAL 20 -0.277 0.084 0.047 1.00 0.00 ATOM 338 CG2 VAL 20 0.436 2.328 0.805 1.00 0.00 ATOM 342 C VAL 20 -3.113 0.802 0.434 1.00 0.00 ATOM 343 O VAL 20 -3.605 0.428 1.505 1.00 0.00 ATOM 344 N ARG 21 -3.446 0.282 -0.742 1.00 0.00 ATOM 346 CA ARG 21 -4.558 -0.614 -1.017 1.00 0.00 ATOM 348 CB ARG 21 -5.668 0.198 -1.680 1.00 0.00 ATOM 351 CG ARG 21 -6.879 -0.611 -2.175 1.00 0.00 ATOM 354 CD ARG 21 -7.953 0.284 -2.827 1.00 0.00 ATOM 357 NE ARG 21 -8.567 1.210 -1.852 1.00 0.00 ATOM 359 CZ ARG 21 -8.066 2.378 -1.482 1.00 0.00 ATOM 360 NH1 ARG 21 -8.528 2.975 -0.422 1.00 0.00 ATOM 363 NH2 ARG 21 -7.110 2.960 -2.138 1.00 0.00 ATOM 366 C ARG 21 -4.086 -1.798 -1.845 1.00 0.00 ATOM 367 O ARG 21 -3.874 -1.700 -3.054 1.00 0.00 ATOM 368 N CYS 22 -3.922 -2.922 -1.158 1.00 0.00 ATOM 370 CA CYS 22 -3.489 -4.186 -1.743 1.00 0.00 ATOM 372 CB CYS 22 -2.352 -4.801 -0.899 1.00 0.00 ATOM 375 SG CYS 22 -1.331 -3.681 0.099 1.00 0.00 ATOM 376 C CYS 22 -4.656 -5.159 -1.834 1.00 0.00 ATOM 377 O CYS 22 -5.374 -5.310 -0.850 1.00 0.00 ATOM 378 N ASP 23 -4.834 -5.809 -2.986 1.00 0.00 ATOM 380 CA ASP 23 -5.843 -6.852 -3.151 1.00 0.00 ATOM 382 CB ASP 23 -6.296 -6.983 -4.618 1.00 0.00 ATOM 385 CG ASP 23 -5.424 -7.917 -5.463 1.00 0.00 ATOM 386 OD1 ASP 23 -5.638 -9.149 -5.356 1.00 0.00 ATOM 387 OD2 ASP 23 -4.576 -7.412 -6.223 1.00 0.00 ATOM 388 C ASP 23 -5.385 -8.186 -2.557 1.00 0.00 ATOM 389 O ASP 23 -4.187 -8.373 -2.288 1.00 0.00 ATOM 390 N GLU 24 -6.368 -9.078 -2.355 1.00 0.00 ATOM 392 CA GLU 24 -6.275 -10.369 -1.654 1.00 0.00 ATOM 394 CB GLU 24 -7.658 -10.997 -1.425 1.00 0.00 ATOM 397 CG GLU 24 -8.663 -10.057 -0.737 1.00 0.00 ATOM 400 CD GLU 24 -8.097 -9.304 0.482 1.00 0.00 ATOM 401 OE1 GLU 24 -7.454 -9.900 1.374 1.00 0.00 ATOM 402 OE2 GLU 24 -8.284 -8.068 0.565 1.00 0.00 ATOM 403 C GLU 24 -5.271 -11.371 -2.247 1.00 0.00 ATOM 404 O GLU 24 -4.843 -12.295 -1.563 1.00 0.00 ATOM 405 N SER 25 -4.801 -11.115 -3.470 1.00 0.00 ATOM 407 CA SER 25 -3.617 -11.752 -4.056 1.00 0.00 ATOM 409 CB SER 25 -3.489 -11.352 -5.533 1.00 0.00 ATOM 412 OG SER 25 -4.713 -11.447 -6.230 1.00 0.00 ATOM 414 C SER 25 -2.290 -11.418 -3.368 1.00 0.00 ATOM 415 O SER 25 -1.250 -11.927 -3.783 1.00 0.00 ATOM 416 N ASN 26 -2.331 -10.559 -2.342 1.00 0.00 ATOM 418 CA ASN 26 -1.218 -9.956 -1.604 1.00 0.00 ATOM 420 CB ASN 26 -0.398 -11.151 -1.070 1.00 0.00 ATOM 423 CG ASN 26 0.438 -10.910 0.150 1.00 0.00 ATOM 424 OD1 ASN 26 0.774 -9.796 0.529 1.00 0.00 ATOM 425 ND2 ASN 26 0.915 -11.978 0.738 1.00 0.00 ATOM 428 C ASN 26 -0.468 -8.918 -2.446 1.00 0.00 ATOM 429 O ASN 26 0.731 -8.689 -2.254 1.00 0.00 ATOM 430 N HIS 27 -1.182 -8.286 -3.390 1.00 0.00 ATOM 432 CA HIS 27 -0.541 -7.447 -4.424 1.00 0.00 ATOM 434 CB HIS 27 -0.973 -7.859 -5.834 1.00 0.00 ATOM 437 CG HIS 27 -0.390 -9.166 -6.310 1.00 0.00 ATOM 438 ND1 HIS 27 0.862 -9.689 -5.970 1.00 0.00 ATOM 439 CE1 HIS 27 0.930 -10.886 -6.568 1.00 0.00 ATOM 441 NE2 HIS 27 -0.178 -11.116 -7.293 1.00 0.00 ATOM 443 CD2 HIS 27 -1.016 -10.034 -7.154 1.00 0.00 ATOM 445 C HIS 27 -0.905 -5.992 -4.165 1.00 0.00 ATOM 446 O HIS 27 -2.074 -5.647 -4.065 1.00 0.00 ATOM 447 N CYS 28 0.089 -5.116 -4.023 1.00 0.00 ATOM 449 CA CYS 28 -0.185 -3.697 -3.818 1.00 0.00 ATOM 451 CB CYS 28 1.099 -2.954 -3.425 1.00 0.00 ATOM 454 SG CYS 28 1.708 -3.455 -1.787 1.00 0.00 ATOM 456 C CYS 28 -0.755 -3.091 -5.110 1.00 0.00 ATOM 457 O CYS 28 -0.015 -2.938 -6.070 1.00 0.00 ATOM 458 N VAL 29 -2.044 -2.754 -5.146 1.00 0.00 ATOM 460 CA VAL 29 -2.663 -2.224 -6.366 1.00 0.00 ATOM 462 CB VAL 29 -4.158 -2.613 -6.471 1.00 0.00 ATOM 464 CG1 VAL 29 -4.700 -2.298 -7.870 1.00 0.00 ATOM 468 CG2 VAL 29 -4.395 -4.096 -6.194 1.00 0.00 ATOM 472 C VAL 29 -2.529 -0.711 -6.440 1.00 0.00 ATOM 473 O VAL 29 -1.983 -0.156 -7.389 1.00 0.00 ATOM 474 N GLU 30 -2.994 -0.022 -5.399 1.00 0.00 ATOM 476 CA GLU 30 -3.087 1.433 -5.392 1.00 0.00 ATOM 478 CB GLU 30 -4.573 1.859 -5.411 1.00 0.00 ATOM 481 CG GLU 30 -4.786 3.372 -5.612 1.00 0.00 ATOM 484 CD GLU 30 -6.257 3.818 -5.560 1.00 0.00 ATOM 485 OE1 GLU 30 -6.572 4.928 -6.049 1.00 0.00 ATOM 486 OE2 GLU 30 -7.107 3.171 -4.902 1.00 0.00 ATOM 487 C GLU 30 -2.308 2.021 -4.228 1.00 0.00 ATOM 488 O GLU 30 -2.296 1.489 -3.118 1.00 0.00 ATOM 489 N VAL 31 -1.686 3.162 -4.477 1.00 0.00 ATOM 491 CA VAL 31 -1.105 4.023 -3.465 1.00 0.00 ATOM 493 CB VAL 31 0.427 4.021 -3.535 1.00 0.00 ATOM 495 CG1 VAL 31 1.035 4.987 -2.507 1.00 0.00 ATOM 499 CG2 VAL 31 0.988 2.618 -3.292 1.00 0.00 ATOM 503 C VAL 31 -1.653 5.422 -3.715 1.00 0.00 ATOM 504 O VAL 31 -1.617 5.947 -4.832 1.00 0.00 ATOM 505 N ARG 32 -2.176 6.058 -2.675 1.00 0.00 ATOM 507 CA ARG 32 -2.715 7.411 -2.763 1.00 0.00 ATOM 509 CB ARG 32 -4.199 7.459 -2.388 1.00 0.00 ATOM 512 CG ARG 32 -5.094 6.634 -3.313 1.00 0.00 ATOM 515 CD ARG 32 -6.543 6.894 -2.907 1.00 0.00 ATOM 518 NE ARG 32 -7.457 5.972 -3.591 1.00 0.00 ATOM 520 CZ ARG 32 -8.587 5.487 -3.120 1.00 0.00 ATOM 521 NH1 ARG 32 -9.246 4.638 -3.853 1.00 0.00 ATOM 524 NH2 ARG 32 -9.021 5.791 -1.934 1.00 0.00 ATOM 527 C ARG 32 -1.895 8.340 -1.886 1.00 0.00 ATOM 528 O ARG 32 -2.169 8.453 -0.686 1.00 0.00 ATOM 529 N CYS 33 -0.856 8.941 -2.448 1.00 0.23 ATOM 531 CA CYS 33 -0.103 9.973 -1.755 1.00 0.23 ATOM 533 CB CYS 33 1.307 10.108 -2.341 1.00 0.23 ATOM 536 SG CYS 33 2.293 8.610 -2.191 1.00 0.23 ATOM 537 C CYS 33 -0.835 11.313 -1.767 1.00 0.23 ATOM 538 O CYS 33 -1.495 11.674 -2.746 1.00 0.23 ATOM 539 N SER 34 -0.646 12.075 -0.689 1.00 0.29 ATOM 541 CA SER 34 -1.156 13.434 -0.513 1.00 0.29 ATOM 543 CB SER 34 -0.611 14.046 0.785 1.00 0.29 ATOM 546 OG SER 34 0.787 13.864 0.927 1.00 0.29 ATOM 548 C SER 34 -0.856 14.411 -1.658 1.00 0.29 ATOM 549 O SER 34 -1.492 15.451 -1.766 1.00 0.29 ATOM 550 N ASP 35 0.104 14.054 -2.507 1.00 0.53 ATOM 552 CA ASP 35 0.722 14.890 -3.531 1.00 0.53 ATOM 554 CB ASP 35 2.251 14.939 -3.276 1.00 0.53 ATOM 557 CG ASP 35 2.699 14.273 -1.955 1.00 0.53 ATOM 558 OD1 ASP 35 2.418 14.835 -0.874 1.00 0.53 ATOM 559 OD2 ASP 35 3.219 13.136 -2.007 1.00 0.53 ATOM 560 C ASP 35 0.395 14.383 -4.948 1.00 0.53 ATOM 561 O ASP 35 0.562 15.118 -5.920 1.00 0.53 ATOM 562 N THR 36 -0.087 13.135 -5.065 1.00 1.00 ATOM 564 CA THR 36 -0.418 12.430 -6.319 1.00 1.00 ATOM 566 CB THR 36 0.724 12.465 -7.367 1.00 1.00 ATOM 568 CG2 THR 36 2.047 11.867 -6.883 1.00 1.00 ATOM 572 OG1 THR 36 0.351 11.745 -8.525 1.00 1.00 ATOM 574 C THR 36 -0.765 10.971 -6.014 1.00 1.00 ATOM 575 O THR 36 -0.347 10.407 -5.005 1.00 1.00 ATOM 576 N LYS 37 -1.461 10.272 -6.913 1.00 1.15 ATOM 578 CA LYS 37 -1.442 8.801 -6.879 1.00 1.15 ATOM 580 CB LYS 37 -2.606 8.214 -7.686 1.00 1.15 ATOM 583 CG LYS 37 -3.963 8.567 -7.069 1.00 1.15 ATOM 586 CD LYS 37 -5.041 7.649 -7.645 1.00 1.15 ATOM 589 CE LYS 37 -6.413 8.027 -7.086 1.00 1.15 ATOM 592 NZ LYS 37 -7.425 7.025 -7.489 1.00 1.15 ATOM 596 C LYS 37 -0.114 8.231 -7.385 1.00 1.15 ATOM 597 O LYS 37 0.565 8.850 -8.204 1.00 1.15 ATOM 598 N TYR 38 0.124 6.979 -7.000 1.00 1.49 ATOM 600 CA TYR 38 0.984 6.021 -7.687 1.00 1.49 ATOM 602 CB TYR 38 2.306 5.814 -6.931 1.00 1.49 ATOM 605 CG TYR 38 3.201 7.031 -6.888 1.00 1.49 ATOM 606 CD1 TYR 38 3.164 7.886 -5.771 1.00 1.49 ATOM 608 CE1 TYR 38 4.004 9.012 -5.718 1.00 1.49 ATOM 610 CZ TYR 38 4.877 9.287 -6.790 1.00 1.49 ATOM 611 OH TYR 38 5.689 10.371 -6.728 1.00 1.49 ATOM 613 CE2 TYR 38 4.911 8.435 -7.916 1.00 1.49 ATOM 615 CD2 TYR 38 4.072 7.305 -7.962 1.00 1.49 ATOM 617 C TYR 38 0.237 4.696 -7.828 1.00 1.49 ATOM 618 O TYR 38 -0.549 4.321 -6.957 1.00 1.49 ATOM 619 N THR 39 0.493 3.952 -8.896 1.00 1.82 ATOM 621 CA THR 39 0.043 2.556 -8.990 1.00 1.82 ATOM 623 CB THR 39 -0.392 2.229 -10.427 1.00 1.82 ATOM 625 CG2 THR 39 -1.028 0.850 -10.580 1.00 1.82 ATOM 629 OG1 THR 39 -1.375 3.150 -10.847 1.00 1.82 ATOM 631 C THR 39 1.196 1.656 -8.571 1.00 1.82 ATOM 632 O THR 39 2.345 1.920 -8.934 1.00 1.82 ATOM 633 N LEU 40 0.902 0.586 -7.837 1.00 2.19 ATOM 635 CA LEU 40 1.872 -0.470 -7.559 1.00 2.19 ATOM 637 CB LEU 40 2.051 -0.656 -6.040 1.00 2.19 ATOM 640 CG LEU 40 2.996 0.347 -5.352 1.00 2.19 ATOM 642 CD1 LEU 40 3.124 -0.047 -3.877 1.00 2.19 ATOM 646 CD2 LEU 40 4.408 0.364 -5.936 1.00 2.19 ATOM 650 C LEU 40 1.461 -1.761 -8.282 1.00 2.19 ATOM 651 O LEU 40 0.378 -1.873 -8.858 1.00 2.19 ATOM 652 N CYS 41 2.352 -2.746 -8.276 1.00 2.10 ATOM 654 CA CYS 41 2.068 -4.066 -8.812 1.00 2.10 ATOM 656 CB CYS 41 3.393 -4.749 -9.191 1.00 2.10 ATOM 659 SG CYS 41 4.296 -3.757 -10.419 1.00 2.10 ATOM 661 C CYS 41 1.285 -4.900 -7.773 1.00 2.10 ATOM 662 O CYS 41 0.951 -4.504 -6.656 1.00 2.10 TER END