####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS044_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.92 1.85 LCS_AVERAGE: 41.46 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 3 13 20 26 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 11 20 32 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 12 20 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 3 18 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 3 14 31 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 9 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 4 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 5 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 5 15 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 5 15 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 17 41 41 3 13 23 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 17 41 41 4 14 26 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 17 41 41 7 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 17 41 41 5 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 17 41 41 5 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 17 41 41 7 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 17 41 41 7 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 17 41 41 7 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 17 41 41 7 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 17 41 41 8 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 17 41 41 9 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 17 41 41 3 15 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 12 41 41 4 14 21 30 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 12 41 41 3 10 15 23 25 38 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 41 41 5 18 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 41 41 5 20 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 12 41 41 5 15 32 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 12 41 41 5 19 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 12 41 41 5 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 41 41 9 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 80.49 ( 41.46 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 25 33 37 39 39 41 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 60.98 80.49 90.24 95.12 95.12 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.29 0.77 0.98 1.10 1.25 1.25 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 GDT RMS_ALL_AT 2.71 1.72 1.60 1.59 1.55 1.55 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.355 0 0.570 0.859 7.352 15.455 10.303 7.352 LGA Q 2 Q 2 1.938 0 0.285 1.261 5.446 54.545 33.939 5.446 LGA E 3 E 3 1.476 0 0.107 1.428 7.473 61.818 33.737 7.473 LGA T 4 T 4 1.190 0 0.023 1.132 3.638 73.636 58.442 3.638 LGA R 5 R 5 0.803 0 0.035 1.400 7.792 81.818 45.785 7.792 LGA K 6 K 6 0.931 0 0.039 0.627 1.373 81.818 72.727 1.146 LGA K 7 K 7 0.895 0 0.078 0.635 2.298 81.818 75.152 2.298 LGA C 8 C 8 1.083 0 0.022 0.064 1.212 65.455 65.455 1.206 LGA T 9 T 9 0.954 0 0.023 0.038 1.276 81.818 74.805 1.132 LGA E 10 E 10 0.773 0 0.037 0.654 1.747 81.818 72.929 1.747 LGA M 11 M 11 0.889 0 0.093 0.837 2.524 81.818 65.227 2.524 LGA K 12 K 12 1.363 0 0.097 1.149 6.676 61.818 41.616 6.676 LGA K 13 K 13 1.302 0 0.028 0.526 3.481 69.545 51.717 2.026 LGA K 14 K 14 0.532 0 0.052 0.572 1.776 81.818 82.626 1.776 LGA F 15 F 15 1.368 0 0.461 0.589 4.082 43.636 48.760 2.460 LGA K 16 K 16 1.750 0 0.282 1.670 6.889 61.818 38.182 6.889 LGA N 17 N 17 0.987 0 0.415 1.029 4.304 70.000 58.409 1.037 LGA C 18 C 18 1.165 0 0.034 0.836 4.269 65.455 55.455 4.269 LGA E 19 E 19 1.203 0 0.282 0.665 3.400 73.636 62.424 3.400 LGA V 20 V 20 1.690 0 0.139 1.116 4.075 47.727 44.675 1.280 LGA R 21 R 21 1.761 0 0.154 1.312 6.821 47.727 30.248 3.636 LGA C 22 C 22 2.258 0 0.026 0.207 3.631 44.545 36.061 3.631 LGA D 23 D 23 2.237 0 0.308 1.059 5.571 31.364 23.182 3.931 LGA E 24 E 24 0.582 0 0.053 1.147 5.060 77.727 49.293 5.060 LGA S 25 S 25 1.253 0 0.105 0.706 1.741 69.545 63.333 1.550 LGA N 26 N 26 1.369 0 0.036 0.932 4.879 65.455 44.091 3.504 LGA H 27 H 27 0.781 0 0.029 0.173 1.062 77.727 80.182 0.803 LGA C 28 C 28 1.173 0 0.173 0.689 2.307 65.455 60.909 2.307 LGA V 29 V 29 1.265 0 0.023 0.131 1.443 65.455 65.455 1.365 LGA E 30 E 30 1.157 0 0.041 0.253 1.338 65.455 70.909 1.223 LGA V 31 V 31 0.948 0 0.027 0.122 1.309 81.818 74.805 1.087 LGA R 32 R 32 0.506 0 0.044 1.149 3.318 81.818 62.479 1.915 LGA C 33 C 33 1.214 0 0.496 0.590 2.708 60.000 56.970 1.804 LGA S 34 S 34 2.703 0 0.230 0.231 4.126 22.273 20.909 3.162 LGA D 35 D 35 4.436 0 0.045 0.216 5.909 11.364 5.682 5.637 LGA T 36 T 36 0.701 0 0.086 0.390 1.717 78.636 77.662 1.208 LGA K 37 K 37 0.367 0 0.062 1.394 3.411 74.545 63.636 3.411 LGA Y 38 Y 38 1.257 0 0.015 1.351 4.646 82.273 51.515 4.646 LGA T 39 T 39 0.934 0 0.110 0.148 2.303 74.091 60.519 2.296 LGA L 40 L 40 0.829 0 0.063 0.638 2.167 81.818 66.591 2.167 LGA C 41 C 41 0.279 1 0.385 0.483 2.954 75.455 56.364 2.954 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 1.523 1.589 2.391 65.166 53.980 32.328 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 1.52 87.805 94.159 2.525 LGA_LOCAL RMSD: 1.523 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.523 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.523 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.436574 * X + -0.550629 * Y + -0.711485 * Z + 37.943653 Y_new = -0.897985 * X + -0.218343 * Y + -0.382033 * Z + 68.864456 Z_new = 0.055011 * X + 0.805689 * Y + -0.589779 * Z + -12.975370 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.118273 -0.055039 2.202690 [DEG: -64.0723 -3.1535 126.2048 ] ZXZ: -1.078026 2.201581 0.068172 [DEG: -61.7663 126.1413 3.9060 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS044_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS044_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 1.52 94.159 1.52 REMARK ---------------------------------------------------------- MOLECULE T0955TS044_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -2.195 -13.802 0.352 1.00 1.74 ATOM 2 CA SER 1 -1.864 -12.394 0.117 1.00 1.74 ATOM 4 CB SER 1 -3.150 -11.572 -0.066 1.00 1.74 ATOM 7 OG SER 1 -2.932 -10.492 -0.957 1.00 1.74 ATOM 9 C SER 1 -0.992 -11.793 1.223 1.00 1.74 ATOM 10 O SER 1 -0.835 -10.578 1.322 1.00 1.74 ATOM 11 N GLN 2 -0.415 -12.641 2.075 1.00 1.80 ATOM 13 CA GLN 2 0.407 -12.234 3.219 1.00 1.80 ATOM 15 CB GLN 2 0.936 -13.494 3.926 1.00 1.80 ATOM 18 CG GLN 2 -0.171 -14.407 4.495 1.00 1.80 ATOM 21 CD GLN 2 0.374 -15.715 5.068 1.00 1.80 ATOM 22 OE1 GLN 2 1.550 -16.021 4.994 1.00 1.80 ATOM 23 NE2 GLN 2 -0.460 -16.548 5.654 1.00 1.80 ATOM 26 C GLN 2 1.572 -11.311 2.808 1.00 1.80 ATOM 27 O GLN 2 1.757 -10.246 3.405 1.00 1.80 ATOM 28 N GLU 3 2.322 -11.679 1.758 1.00 1.51 ATOM 30 CA GLU 3 3.380 -10.815 1.221 1.00 1.51 ATOM 32 CB GLU 3 4.197 -11.517 0.119 1.00 1.51 ATOM 35 CG GLU 3 5.608 -10.920 -0.090 1.00 1.51 ATOM 38 CD GLU 3 5.655 -9.491 -0.658 1.00 1.51 ATOM 39 OE1 GLU 3 6.512 -8.698 -0.197 1.00 1.51 ATOM 40 OE2 GLU 3 4.837 -9.167 -1.554 1.00 1.51 ATOM 41 C GLU 3 2.808 -9.482 0.724 1.00 1.51 ATOM 42 O GLU 3 3.296 -8.428 1.113 1.00 1.51 ATOM 43 N THR 4 1.711 -9.496 -0.035 1.00 1.08 ATOM 45 CA THR 4 1.068 -8.274 -0.532 1.00 1.08 ATOM 47 CB THR 4 -0.127 -8.605 -1.431 1.00 1.08 ATOM 49 CG2 THR 4 -0.687 -7.388 -2.165 1.00 1.08 ATOM 53 OG1 THR 4 0.302 -9.513 -2.419 1.00 1.08 ATOM 55 C THR 4 0.648 -7.305 0.579 1.00 1.08 ATOM 56 O THR 4 0.938 -6.113 0.484 1.00 1.08 ATOM 57 N ARG 5 0.031 -7.791 1.663 1.00 0.83 ATOM 59 CA ARG 5 -0.312 -6.988 2.848 1.00 0.83 ATOM 61 CB ARG 5 -1.176 -7.811 3.823 1.00 0.83 ATOM 64 CG ARG 5 -2.666 -7.679 3.498 1.00 0.83 ATOM 67 CD ARG 5 -3.239 -6.318 3.937 1.00 0.83 ATOM 70 NE ARG 5 -4.622 -6.161 3.461 1.00 0.83 ATOM 72 CZ ARG 5 -5.520 -5.263 3.792 1.00 0.83 ATOM 73 NH1 ARG 5 -6.740 -5.344 3.347 1.00 0.83 ATOM 76 NH2 ARG 5 -5.231 -4.257 4.567 1.00 0.83 ATOM 79 C ARG 5 0.914 -6.429 3.566 1.00 0.83 ATOM 80 O ARG 5 0.905 -5.261 3.974 1.00 0.83 ATOM 81 N LYS 6 1.979 -7.224 3.691 1.00 0.70 ATOM 83 CA LYS 6 3.276 -6.770 4.218 1.00 0.70 ATOM 85 CB LYS 6 4.170 -8.023 4.385 1.00 0.70 ATOM 88 CG LYS 6 5.703 -7.872 4.379 1.00 0.70 ATOM 91 CD LYS 6 6.264 -7.844 2.952 1.00 0.70 ATOM 94 CE LYS 6 7.774 -8.059 2.882 1.00 0.70 ATOM 97 NZ LYS 6 8.261 -7.566 1.577 1.00 0.70 ATOM 101 C LYS 6 3.854 -5.613 3.390 1.00 0.70 ATOM 102 O LYS 6 4.178 -4.578 3.965 1.00 0.70 ATOM 103 N LYS 7 3.866 -5.732 2.058 1.00 0.77 ATOM 105 CA LYS 7 4.352 -4.733 1.090 1.00 0.77 ATOM 107 CB LYS 7 4.274 -5.361 -0.314 1.00 0.77 ATOM 110 CG LYS 7 4.931 -4.505 -1.412 1.00 0.77 ATOM 113 CD LYS 7 4.611 -4.974 -2.842 1.00 0.77 ATOM 116 CE LYS 7 4.929 -6.458 -3.087 1.00 0.77 ATOM 119 NZ LYS 7 3.713 -7.300 -3.061 1.00 0.77 ATOM 123 C LYS 7 3.546 -3.435 1.161 1.00 0.77 ATOM 124 O LYS 7 4.111 -2.348 1.239 1.00 0.77 ATOM 125 N CYS 8 2.220 -3.542 1.192 1.00 0.42 ATOM 127 CA CYS 8 1.305 -2.424 1.419 1.00 0.42 ATOM 129 CB CYS 8 -0.107 -3.018 1.466 1.00 0.42 ATOM 132 SG CYS 8 -1.337 -1.739 1.822 1.00 0.42 ATOM 134 C CYS 8 1.636 -1.656 2.705 1.00 0.42 ATOM 135 O CYS 8 1.781 -0.435 2.678 1.00 0.42 ATOM 136 N THR 9 1.814 -2.372 3.816 1.00 0.41 ATOM 138 CA THR 9 2.105 -1.781 5.134 1.00 0.41 ATOM 140 CB THR 9 2.008 -2.880 6.205 1.00 0.41 ATOM 142 CG2 THR 9 2.110 -2.324 7.626 1.00 0.41 ATOM 146 OG1 THR 9 0.763 -3.538 6.124 1.00 0.41 ATOM 148 C THR 9 3.480 -1.095 5.191 1.00 0.41 ATOM 149 O THR 9 3.621 0.002 5.745 1.00 0.41 ATOM 150 N GLU 10 4.495 -1.697 4.561 1.00 0.54 ATOM 152 CA GLU 10 5.796 -1.059 4.336 1.00 0.54 ATOM 154 CB GLU 10 6.706 -1.929 3.451 1.00 0.54 ATOM 157 CG GLU 10 7.338 -3.220 3.981 1.00 0.54 ATOM 160 CD GLU 10 8.140 -3.861 2.835 1.00 0.54 ATOM 161 OE1 GLU 10 7.898 -5.041 2.485 1.00 0.54 ATOM 162 OE2 GLU 10 8.965 -3.125 2.238 1.00 0.54 ATOM 163 C GLU 10 5.654 0.271 3.598 1.00 0.54 ATOM 164 O GLU 10 6.196 1.284 4.040 1.00 0.54 ATOM 165 N MET 11 4.955 0.272 2.458 1.00 0.58 ATOM 167 CA MET 11 4.816 1.467 1.630 1.00 0.58 ATOM 169 CB MET 11 4.283 1.123 0.237 1.00 0.58 ATOM 172 CG MET 11 5.272 0.236 -0.544 1.00 0.58 ATOM 175 SD MET 11 7.010 0.769 -0.677 1.00 0.58 ATOM 176 CE MET 11 6.821 2.391 -1.464 1.00 0.58 ATOM 180 C MET 11 4.028 2.569 2.345 1.00 0.58 ATOM 181 O MET 11 4.465 3.720 2.330 1.00 0.58 ATOM 182 N LYS 12 2.972 2.230 3.097 1.00 0.51 ATOM 184 CA LYS 12 2.303 3.161 4.019 1.00 0.51 ATOM 186 CB LYS 12 1.176 2.442 4.786 1.00 0.51 ATOM 189 CG LYS 12 0.471 3.275 5.880 1.00 0.51 ATOM 192 CD LYS 12 -0.072 4.635 5.413 1.00 0.51 ATOM 195 CE LYS 12 -0.769 5.365 6.570 1.00 0.51 ATOM 198 NZ LYS 12 -1.102 6.761 6.206 1.00 0.51 ATOM 202 C LYS 12 3.284 3.813 4.985 1.00 0.51 ATOM 203 O LYS 12 3.288 5.037 5.106 1.00 0.51 ATOM 204 N LYS 13 4.130 3.022 5.656 1.00 0.22 ATOM 206 CA LYS 13 5.113 3.584 6.600 1.00 0.22 ATOM 208 CB LYS 13 5.787 2.455 7.400 1.00 0.22 ATOM 211 CG LYS 13 4.802 1.825 8.401 1.00 0.22 ATOM 214 CD LYS 13 5.459 0.718 9.232 1.00 0.22 ATOM 217 CE LYS 13 4.410 0.098 10.165 1.00 0.22 ATOM 220 NZ LYS 13 5.018 -0.850 11.134 1.00 0.22 ATOM 224 C LYS 13 6.148 4.500 5.932 1.00 0.22 ATOM 225 O LYS 13 6.425 5.583 6.447 1.00 0.22 ATOM 226 N LYS 14 6.676 4.118 4.765 1.00 0.23 ATOM 228 CA LYS 14 7.655 4.898 3.982 1.00 0.23 ATOM 230 CB LYS 14 8.141 4.051 2.789 1.00 0.23 ATOM 233 CG LYS 14 8.972 2.815 3.198 1.00 0.23 ATOM 236 CD LYS 14 9.001 1.783 2.061 1.00 0.23 ATOM 239 CE LYS 14 9.604 0.434 2.479 1.00 0.23 ATOM 242 NZ LYS 14 9.385 -0.602 1.434 1.00 0.23 ATOM 246 C LYS 14 7.093 6.240 3.501 1.00 0.23 ATOM 247 O LYS 14 7.772 7.261 3.607 1.00 0.23 ATOM 248 N PHE 15 5.838 6.276 3.047 1.00 0.38 ATOM 250 CA PHE 15 5.191 7.498 2.552 1.00 0.38 ATOM 252 CB PHE 15 4.112 7.126 1.533 1.00 0.38 ATOM 255 CG PHE 15 4.638 6.654 0.187 1.00 0.38 ATOM 256 CD1 PHE 15 4.230 5.414 -0.342 1.00 0.38 ATOM 258 CE1 PHE 15 4.652 5.013 -1.620 1.00 0.38 ATOM 260 CZ PHE 15 5.497 5.845 -2.372 1.00 0.38 ATOM 262 CE2 PHE 15 5.898 7.088 -1.858 1.00 0.38 ATOM 264 CD2 PHE 15 5.463 7.498 -0.585 1.00 0.38 ATOM 266 C PHE 15 4.622 8.416 3.653 1.00 0.38 ATOM 267 O PHE 15 4.770 9.633 3.554 1.00 0.38 ATOM 268 N LYS 16 4.088 7.883 4.761 1.00 0.00 ATOM 270 CA LYS 16 3.347 8.604 5.831 1.00 0.00 ATOM 272 CB LYS 16 4.229 9.608 6.607 1.00 0.00 ATOM 275 CG LYS 16 5.272 8.909 7.497 1.00 0.00 ATOM 278 CD LYS 16 6.692 9.496 7.418 1.00 0.00 ATOM 281 CE LYS 16 7.499 8.938 6.238 1.00 0.00 ATOM 284 NZ LYS 16 7.265 9.643 4.954 1.00 0.00 ATOM 288 C LYS 16 2.019 9.207 5.373 1.00 0.00 ATOM 289 O LYS 16 0.957 8.660 5.702 1.00 0.00 ATOM 290 N ASN 17 2.052 10.274 4.582 1.00 0.00 ATOM 292 CA ASN 17 0.872 11.041 4.169 1.00 0.00 ATOM 294 CB ASN 17 1.216 12.551 4.083 1.00 0.00 ATOM 297 CG ASN 17 1.444 13.227 5.439 1.00 0.00 ATOM 298 OD1 ASN 17 2.033 12.663 6.350 1.00 0.00 ATOM 299 ND2 ASN 17 0.974 14.439 5.638 1.00 0.00 ATOM 302 C ASN 17 0.233 10.454 2.890 1.00 0.00 ATOM 303 O ASN 17 0.094 11.110 1.854 1.00 0.00 ATOM 304 N CYS 18 -0.149 9.177 3.011 1.00 0.00 ATOM 306 CA CYS 18 -0.864 8.417 1.993 1.00 0.00 ATOM 308 CB CYS 18 0.126 7.530 1.236 1.00 0.00 ATOM 311 SG CYS 18 0.802 6.253 2.323 1.00 0.00 ATOM 313 C CYS 18 -2.053 7.625 2.543 1.00 0.00 ATOM 314 O CYS 18 -2.068 7.212 3.704 1.00 0.00 ATOM 315 N GLU 19 -3.041 7.366 1.692 1.00 0.00 ATOM 317 CA GLU 19 -3.923 6.210 1.848 1.00 0.00 ATOM 319 CB GLU 19 -5.282 6.523 1.188 1.00 0.00 ATOM 322 CG GLU 19 -6.397 5.563 1.635 1.00 0.00 ATOM 325 CD GLU 19 -7.681 5.725 0.816 1.00 0.00 ATOM 326 OE1 GLU 19 -7.622 5.687 -0.435 1.00 0.00 ATOM 327 OE2 GLU 19 -8.795 5.718 1.386 1.00 0.00 ATOM 328 C GLU 19 -3.258 5.009 1.179 1.00 0.00 ATOM 329 O GLU 19 -2.595 5.160 0.152 1.00 0.00 ATOM 330 N VAL 20 -3.471 3.811 1.715 1.00 0.00 ATOM 332 CA VAL 20 -3.118 2.569 1.025 1.00 0.00 ATOM 334 CB VAL 20 -1.909 1.855 1.656 1.00 0.00 ATOM 336 CG1 VAL 20 -0.662 2.744 1.624 1.00 0.00 ATOM 340 CG2 VAL 20 -2.139 1.404 3.107 1.00 0.00 ATOM 344 C VAL 20 -4.341 1.670 1.000 1.00 0.00 ATOM 345 O VAL 20 -5.137 1.633 1.946 1.00 0.00 ATOM 346 N ARG 21 -4.514 0.966 -0.110 1.00 0.00 ATOM 348 CA ARG 21 -5.694 0.180 -0.445 1.00 0.00 ATOM 350 CB ARG 21 -6.655 0.985 -1.329 1.00 0.00 ATOM 353 CG ARG 21 -7.347 2.074 -0.508 1.00 0.00 ATOM 356 CD ARG 21 -8.545 2.642 -1.263 1.00 0.00 ATOM 359 NE ARG 21 -9.371 3.432 -0.339 1.00 0.00 ATOM 361 CZ ARG 21 -10.198 2.955 0.570 1.00 0.00 ATOM 362 NH1 ARG 21 -10.597 3.713 1.540 1.00 0.00 ATOM 365 NH2 ARG 21 -10.622 1.721 0.550 1.00 0.00 ATOM 368 C ARG 21 -5.264 -1.096 -1.146 1.00 0.00 ATOM 369 O ARG 21 -5.066 -1.106 -2.360 1.00 0.00 ATOM 370 N CYS 22 -5.089 -2.161 -0.365 1.00 0.00 ATOM 372 CA CYS 22 -5.020 -3.488 -0.948 1.00 0.00 ATOM 374 CB CYS 22 -4.818 -4.568 0.118 1.00 0.00 ATOM 377 SG CYS 22 -3.165 -4.568 0.841 1.00 0.00 ATOM 379 C CYS 22 -6.322 -3.839 -1.679 1.00 0.00 ATOM 380 O CYS 22 -7.417 -3.459 -1.254 1.00 0.00 ATOM 381 N ASP 23 -6.172 -4.683 -2.683 1.00 0.00 ATOM 383 CA ASP 23 -7.196 -5.517 -3.262 1.00 0.00 ATOM 385 CB ASP 23 -7.539 -5.027 -4.682 1.00 0.00 ATOM 388 CG ASP 23 -8.699 -5.800 -5.319 1.00 0.00 ATOM 389 OD1 ASP 23 -9.282 -5.271 -6.289 1.00 0.00 ATOM 390 OD2 ASP 23 -8.979 -6.937 -4.858 1.00 0.00 ATOM 391 C ASP 23 -6.662 -6.950 -3.206 1.00 0.00 ATOM 392 O ASP 23 -5.843 -7.357 -4.044 1.00 0.00 ATOM 393 N GLU 24 -7.086 -7.656 -2.144 1.00 0.00 ATOM 395 CA GLU 24 -6.837 -9.081 -1.881 1.00 0.00 ATOM 397 CB GLU 24 -7.406 -9.493 -0.508 1.00 0.00 ATOM 400 CG GLU 24 -6.399 -9.379 0.643 1.00 0.00 ATOM 403 CD GLU 24 -6.105 -7.940 1.056 1.00 0.00 ATOM 404 OE1 GLU 24 -7.050 -7.203 1.408 1.00 0.00 ATOM 405 OE2 GLU 24 -4.921 -7.553 1.149 1.00 0.00 ATOM 406 C GLU 24 -7.410 -10.014 -2.951 1.00 0.00 ATOM 407 O GLU 24 -6.967 -11.162 -3.061 1.00 0.00 ATOM 408 N SER 25 -8.385 -9.560 -3.739 1.00 0.00 ATOM 410 CA SER 25 -8.959 -10.355 -4.828 1.00 0.00 ATOM 412 CB SER 25 -10.419 -9.944 -5.071 1.00 0.00 ATOM 415 OG SER 25 -10.562 -8.754 -5.819 1.00 0.00 ATOM 417 C SER 25 -8.163 -10.259 -6.132 1.00 0.00 ATOM 418 O SER 25 -8.203 -11.165 -6.964 1.00 0.00 ATOM 419 N ASN 26 -7.391 -9.179 -6.273 1.00 0.00 ATOM 421 CA ASN 26 -6.557 -8.884 -7.434 1.00 0.00 ATOM 423 CB ASN 26 -6.952 -7.468 -7.895 1.00 0.00 ATOM 426 CG ASN 26 -6.282 -7.045 -9.185 1.00 0.00 ATOM 427 OD1 ASN 26 -5.546 -6.077 -9.265 1.00 0.00 ATOM 428 ND2 ASN 26 -6.522 -7.748 -10.261 1.00 0.00 ATOM 431 C ASN 26 -5.044 -8.976 -7.127 1.00 0.00 ATOM 432 O ASN 26 -4.220 -8.986 -8.032 1.00 0.00 ATOM 433 N HIS 27 -4.694 -9.054 -5.839 1.00 0.00 ATOM 435 CA HIS 27 -3.356 -8.876 -5.263 1.00 0.00 ATOM 437 CB HIS 27 -2.514 -10.157 -5.399 1.00 0.00 ATOM 440 CG HIS 27 -3.056 -11.314 -4.595 1.00 0.00 ATOM 441 ND1 HIS 27 -2.455 -11.867 -3.455 1.00 0.00 ATOM 442 CE1 HIS 27 -3.265 -12.875 -3.083 1.00 0.00 ATOM 444 NE2 HIS 27 -4.342 -12.941 -3.879 1.00 0.00 ATOM 446 CD2 HIS 27 -4.219 -11.978 -4.847 1.00 0.00 ATOM 448 C HIS 27 -2.640 -7.592 -5.682 1.00 0.00 ATOM 449 O HIS 27 -1.408 -7.538 -5.759 1.00 0.00 ATOM 450 N CYS 28 -3.412 -6.526 -5.897 1.00 0.00 ATOM 452 CA CYS 28 -2.819 -5.213 -6.181 1.00 0.00 ATOM 454 CB CYS 28 -3.520 -4.591 -7.395 1.00 0.00 ATOM 457 SG CYS 28 -2.581 -3.174 -8.039 1.00 0.00 ATOM 459 C CYS 28 -2.872 -4.352 -4.917 1.00 0.00 ATOM 460 O CYS 28 -3.526 -4.689 -3.930 1.00 0.00 ATOM 461 N VAL 29 -2.167 -3.232 -4.946 1.00 0.00 ATOM 463 CA VAL 29 -2.238 -2.187 -3.938 1.00 0.00 ATOM 465 CB VAL 29 -1.086 -2.247 -2.910 1.00 0.00 ATOM 467 CG1 VAL 29 -1.353 -1.285 -1.743 1.00 0.00 ATOM 471 CG2 VAL 29 -0.847 -3.643 -2.317 1.00 0.00 ATOM 475 C VAL 29 -2.227 -0.857 -4.665 1.00 0.00 ATOM 476 O VAL 29 -1.214 -0.471 -5.258 1.00 0.00 ATOM 477 N GLU 30 -3.330 -0.124 -4.614 1.00 0.00 ATOM 479 CA GLU 30 -3.265 1.300 -4.904 1.00 0.00 ATOM 481 CB GLU 30 -4.634 1.828 -5.361 1.00 0.00 ATOM 484 CG GLU 30 -4.563 3.337 -5.631 1.00 0.00 ATOM 487 CD GLU 30 -5.637 3.824 -6.599 1.00 0.00 ATOM 488 OE1 GLU 30 -6.662 4.398 -6.161 1.00 0.00 ATOM 489 OE2 GLU 30 -5.395 3.817 -7.821 1.00 0.00 ATOM 490 C GLU 30 -2.740 2.038 -3.679 1.00 0.00 ATOM 491 O GLU 30 -3.160 1.788 -2.554 1.00 0.00 ATOM 492 N VAL 31 -1.855 2.995 -3.917 1.00 0.00 ATOM 494 CA VAL 31 -1.390 3.937 -2.915 1.00 0.00 ATOM 496 CB VAL 31 0.085 3.680 -2.584 1.00 0.00 ATOM 498 CG1 VAL 31 0.649 4.745 -1.637 1.00 0.00 ATOM 502 CG2 VAL 31 0.249 2.292 -1.956 1.00 0.00 ATOM 506 C VAL 31 -1.659 5.336 -3.451 1.00 0.00 ATOM 507 O VAL 31 -1.469 5.646 -4.628 1.00 0.00 ATOM 508 N ARG 32 -2.157 6.194 -2.573 1.00 0.00 ATOM 510 CA ARG 32 -2.562 7.555 -2.891 1.00 0.00 ATOM 512 CB ARG 32 -4.085 7.729 -2.723 1.00 0.00 ATOM 515 CG ARG 32 -4.928 6.736 -3.530 1.00 0.00 ATOM 518 CD ARG 32 -6.421 6.976 -3.280 1.00 0.00 ATOM 521 NE ARG 32 -7.220 5.988 -4.021 1.00 0.00 ATOM 523 CZ ARG 32 -8.412 5.507 -3.751 1.00 0.00 ATOM 524 NH1 ARG 32 -8.913 4.640 -4.582 1.00 0.00 ATOM 527 NH2 ARG 32 -9.094 5.819 -2.691 1.00 0.00 ATOM 530 C ARG 32 -1.793 8.488 -1.965 1.00 0.00 ATOM 531 O ARG 32 -2.266 8.740 -0.853 1.00 0.00 ATOM 532 N CYS 33 -0.594 8.923 -2.348 1.00 0.00 ATOM 534 CA CYS 33 0.163 9.904 -1.575 1.00 0.00 ATOM 536 CB CYS 33 1.676 9.734 -1.808 1.00 0.00 ATOM 539 SG CYS 33 2.175 8.011 -1.555 1.00 0.00 ATOM 541 C CYS 33 -0.290 11.320 -1.930 1.00 0.00 ATOM 542 O CYS 33 -0.737 11.577 -3.049 1.00 0.00 ATOM 543 N SER 34 -0.159 12.233 -0.961 1.00 0.00 ATOM 545 CA SER 34 -0.598 13.637 -1.103 1.00 0.00 ATOM 547 CB SER 34 -0.362 14.381 0.215 1.00 0.00 ATOM 550 OG SER 34 -0.964 13.704 1.311 1.00 0.00 ATOM 552 C SER 34 0.113 14.394 -2.237 1.00 0.00 ATOM 553 O SER 34 -0.412 15.366 -2.767 1.00 0.00 ATOM 554 N ASP 35 1.311 13.929 -2.584 1.00 0.00 ATOM 556 CA ASP 35 2.178 14.350 -3.683 1.00 0.00 ATOM 558 CB ASP 35 3.628 14.036 -3.259 1.00 0.00 ATOM 561 CG ASP 35 3.753 12.643 -2.621 1.00 0.00 ATOM 562 OD1 ASP 35 4.012 11.665 -3.350 1.00 0.00 ATOM 563 OD2 ASP 35 3.450 12.543 -1.407 1.00 0.00 ATOM 564 C ASP 35 1.883 13.665 -5.029 1.00 0.00 ATOM 565 O ASP 35 2.116 14.289 -6.065 1.00 0.00 ATOM 566 N THR 36 1.409 12.408 -5.050 1.00 0.33 ATOM 568 CA THR 36 1.414 11.534 -6.245 1.00 0.33 ATOM 570 CB THR 36 2.863 11.376 -6.773 1.00 0.33 ATOM 572 CG2 THR 36 3.176 10.146 -7.616 1.00 0.33 ATOM 576 OG1 THR 36 3.124 12.453 -7.643 1.00 0.33 ATOM 578 C THR 36 0.756 10.173 -5.955 1.00 0.33 ATOM 579 O THR 36 0.887 9.600 -4.876 1.00 0.33 ATOM 580 N LYS 37 0.037 9.596 -6.930 1.00 0.34 ATOM 582 CA LYS 37 -0.360 8.176 -6.859 1.00 0.34 ATOM 584 CB LYS 37 -1.439 7.834 -7.904 1.00 0.34 ATOM 587 CG LYS 37 -2.877 7.937 -7.364 1.00 0.34 ATOM 590 CD LYS 37 -3.840 7.212 -8.317 1.00 0.34 ATOM 593 CE LYS 37 -5.271 7.202 -7.771 1.00 0.34 ATOM 596 NZ LYS 37 -6.129 6.267 -8.535 1.00 0.34 ATOM 600 C LYS 37 0.839 7.256 -7.097 1.00 0.34 ATOM 601 O LYS 37 1.641 7.484 -7.996 1.00 0.34 ATOM 602 N TYR 38 0.829 6.124 -6.405 1.00 0.33 ATOM 604 CA TYR 38 1.737 5.003 -6.611 1.00 0.33 ATOM 606 CB TYR 38 2.723 4.899 -5.440 1.00 0.33 ATOM 609 CG TYR 38 3.770 5.995 -5.432 1.00 0.33 ATOM 610 CD1 TYR 38 3.499 7.223 -4.796 1.00 0.33 ATOM 612 CE1 TYR 38 4.471 8.242 -4.781 1.00 0.33 ATOM 614 CZ TYR 38 5.715 8.036 -5.410 1.00 0.33 ATOM 615 OH TYR 38 6.662 9.011 -5.397 1.00 0.33 ATOM 617 CE2 TYR 38 5.983 6.810 -6.055 1.00 0.33 ATOM 619 CD2 TYR 38 5.011 5.792 -6.070 1.00 0.33 ATOM 621 C TYR 38 0.937 3.724 -6.825 1.00 0.33 ATOM 622 O TYR 38 -0.172 3.565 -6.304 1.00 0.33 ATOM 623 N THR 39 1.490 2.777 -7.572 1.00 0.89 ATOM 625 CA THR 39 0.806 1.511 -7.847 1.00 0.89 ATOM 627 CB THR 39 0.237 1.448 -9.270 1.00 0.89 ATOM 629 CG2 THR 39 -0.743 0.284 -9.440 1.00 0.89 ATOM 633 OG1 THR 39 -0.489 2.621 -9.555 1.00 0.89 ATOM 635 C THR 39 1.764 0.361 -7.606 1.00 0.89 ATOM 636 O THR 39 2.902 0.372 -8.072 1.00 0.89 ATOM 637 N LEU 40 1.321 -0.603 -6.805 1.00 1.02 ATOM 639 CA LEU 40 2.194 -1.477 -6.035 1.00 1.02 ATOM 641 CB LEU 40 2.316 -0.894 -4.611 1.00 1.02 ATOM 644 CG LEU 40 3.448 0.142 -4.511 1.00 1.02 ATOM 646 CD1 LEU 40 3.158 1.145 -3.403 1.00 1.02 ATOM 650 CD2 LEU 40 4.780 -0.561 -4.227 1.00 1.02 ATOM 654 C LEU 40 1.664 -2.908 -6.075 1.00 1.02 ATOM 655 O LEU 40 0.780 -3.286 -5.320 1.00 1.02 ATOM 656 N CYS 41 2.162 -3.698 -7.022 1.00 1.32 ATOM 658 CA CYS 41 1.644 -5.030 -7.343 1.00 1.32 ATOM 660 CB CYS 41 2.556 -5.662 -8.407 1.00 1.32 ATOM 663 SG CYS 41 2.700 -4.575 -9.858 1.00 1.32 ATOM 665 C CYS 41 1.455 -5.956 -6.120 1.00 1.32 ATOM 666 O CYS 41 1.720 -5.604 -4.970 1.00 1.32 TER END