####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS043_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.89 1.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.89 1.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.96 2.52 LCS_AVERAGE: 39.14 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 5 9 28 32 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 9 17 23 29 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 9 17 25 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 9 17 28 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 41 41 10 19 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 41 41 10 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 41 41 12 25 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 10 22 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 10 23 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 6 18 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 41 41 4 8 19 30 35 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 41 41 4 7 13 23 34 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 41 41 3 4 5 13 18 27 35 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 8 41 41 3 4 9 9 26 33 37 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 15 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 8 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 12 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 10 21 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 5 25 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 10 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 79.71 ( 39.14 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 26 31 35 36 37 38 39 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 36.59 63.41 75.61 85.37 87.80 90.24 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.67 0.82 1.07 1.17 1.27 1.41 1.60 1.71 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 GDT RMS_ALL_AT 2.20 2.10 2.10 1.98 1.96 1.95 1.94 1.90 1.91 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.671 0 0.128 0.774 7.328 1.818 1.212 5.628 LGA Q 2 Q 2 2.930 0 0.197 0.948 3.234 33.636 28.081 2.728 LGA E 3 E 3 2.016 0 0.021 1.498 7.248 48.182 25.859 5.958 LGA T 4 T 4 1.734 0 0.024 1.106 3.163 58.182 48.571 3.163 LGA R 5 R 5 1.407 0 0.016 0.226 4.793 69.545 37.025 4.793 LGA K 6 K 6 0.700 0 0.025 1.268 6.191 86.364 52.929 6.090 LGA K 7 K 7 0.508 0 0.044 0.661 3.222 90.909 60.606 3.222 LGA C 8 C 8 0.331 0 0.028 0.760 2.428 90.909 83.636 2.428 LGA T 9 T 9 0.955 0 0.015 0.098 1.637 73.636 68.052 1.197 LGA E 10 E 10 1.088 0 0.027 0.410 1.821 73.636 67.475 1.275 LGA M 11 M 11 0.733 0 0.028 0.876 3.946 81.818 72.955 3.946 LGA K 12 K 12 0.837 0 0.035 0.661 1.827 73.636 71.313 1.601 LGA K 13 K 13 1.291 0 0.032 0.581 2.142 61.818 62.626 2.142 LGA K 14 K 14 1.519 0 0.018 0.622 3.692 54.545 52.929 3.692 LGA F 15 F 15 1.062 0 0.120 0.267 2.134 69.545 63.306 1.971 LGA K 16 K 16 1.673 0 0.674 1.370 5.771 50.000 32.727 5.487 LGA N 17 N 17 1.629 0 0.298 0.555 3.780 65.909 47.273 3.780 LGA C 18 C 18 1.376 0 0.017 0.041 1.609 61.818 63.030 1.410 LGA E 19 E 19 0.921 0 0.095 0.408 1.550 82.273 80.606 0.476 LGA V 20 V 20 1.102 0 0.019 0.046 1.421 65.455 65.455 1.039 LGA R 21 R 21 1.126 0 0.084 1.172 6.695 69.545 36.694 6.695 LGA C 22 C 22 2.997 0 0.033 0.743 5.418 27.727 20.303 5.418 LGA D 23 D 23 3.922 0 0.015 1.251 5.358 8.182 8.182 3.847 LGA E 24 E 24 5.436 0 0.066 0.634 10.911 7.727 3.434 8.772 LGA S 25 S 25 1.244 0 0.198 0.719 5.745 45.455 32.121 5.745 LGA N 26 N 26 4.300 0 0.266 1.169 8.434 15.909 7.955 5.632 LGA H 27 H 27 1.003 0 0.416 1.172 7.660 82.273 37.455 7.660 LGA C 28 C 28 0.707 0 0.118 0.158 1.109 81.818 79.091 1.109 LGA V 29 V 29 0.616 0 0.037 0.057 0.754 81.818 81.818 0.533 LGA E 30 E 30 0.364 0 0.110 0.631 1.627 95.455 86.667 1.319 LGA V 31 V 31 0.287 0 0.097 0.128 0.759 95.455 89.610 0.677 LGA R 32 R 32 0.420 0 0.128 1.038 6.852 86.818 52.562 6.852 LGA C 33 C 33 0.460 0 0.060 0.883 3.012 90.909 80.303 3.012 LGA S 34 S 34 0.986 0 0.036 0.669 1.947 70.000 68.788 1.947 LGA D 35 D 35 1.879 0 0.086 0.986 5.978 54.545 32.273 5.965 LGA T 36 T 36 1.224 0 0.046 0.156 1.903 78.182 70.649 1.903 LGA K 37 K 37 0.498 0 0.144 1.535 4.936 75.909 57.172 4.936 LGA Y 38 Y 38 1.589 0 0.024 1.362 4.473 74.545 45.455 4.473 LGA T 39 T 39 1.331 0 0.066 0.086 2.812 58.636 48.312 2.281 LGA L 40 L 40 0.436 0 0.067 0.986 4.013 95.455 64.318 4.013 LGA C 41 C 41 1.266 0 0.107 0.820 3.904 78.182 63.377 3.904 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.895 1.856 2.878 65.078 52.493 27.450 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 39 1.60 85.976 92.073 2.291 LGA_LOCAL RMSD: 1.603 Number of atoms: 39 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.901 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.895 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.956283 * X + 0.254793 * Y + 0.143538 * Z + -4.687247 Y_new = -0.031720 * X + 0.578300 * Y + -0.815207 * Z + -12.679151 Z_new = -0.290717 * X + 0.775016 * Y + 0.561101 * Z + 2.357294 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.033158 0.294976 0.944153 [DEG: -1.8998 16.9009 54.0960 ] ZXZ: 0.174289 0.975082 -0.358868 [DEG: 9.9860 55.8681 -20.5616 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS043_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 39 1.60 92.073 1.89 REMARK ---------------------------------------------------------- MOLECULE T0955TS043_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 1 N SER 1 -4.687 -12.679 2.357 1.00 0.90 N ATOM 2 CA SER 1 -3.293 -12.725 1.933 1.00 0.90 C ATOM 3 C SER 1 -2.404 -11.922 2.874 1.00 0.90 C ATOM 4 O SER 1 -2.413 -10.691 2.851 1.00 0.90 O ATOM 5 CB SER 1 -3.159 -12.194 0.520 1.00 0.90 C ATOM 6 OG SER 1 -1.813 -12.112 0.139 1.00 0.90 O ATOM 14 N GLN 2 -1.638 -12.625 3.700 1.00 0.65 N ATOM 15 CA GLN 2 -0.714 -11.978 4.625 1.00 0.65 C ATOM 16 C GLN 2 0.429 -11.303 3.879 1.00 0.65 C ATOM 17 O GLN 2 0.948 -10.276 4.316 1.00 0.65 O ATOM 18 CB GLN 2 -0.156 -12.995 5.625 1.00 0.65 C ATOM 19 CG GLN 2 0.697 -12.386 6.723 1.00 0.65 C ATOM 20 CD GLN 2 -0.081 -11.410 7.587 1.00 0.65 C ATOM 21 OE1 GLN 2 -1.235 -11.661 7.945 1.00 0.65 O ATOM 22 NE2 GLN 2 0.547 -10.290 7.925 1.00 0.65 N ATOM 31 N GLU 3 0.819 -11.885 2.749 1.00 0.47 N ATOM 32 CA GLU 3 1.889 -11.330 1.931 1.00 0.47 C ATOM 33 C GLU 3 1.481 -9.996 1.320 1.00 0.47 C ATOM 34 O GLU 3 2.307 -9.096 1.160 1.00 0.47 O ATOM 35 CB GLU 3 2.277 -12.311 0.823 1.00 0.47 C ATOM 36 CG GLU 3 2.938 -13.589 1.318 1.00 0.47 C ATOM 37 CD GLU 3 4.221 -13.335 2.060 1.00 0.47 C ATOM 38 OE1 GLU 3 5.037 -12.598 1.562 1.00 0.47 O ATOM 39 OE2 GLU 3 4.384 -13.879 3.127 1.00 0.47 O ATOM 46 N THR 4 0.202 -9.872 0.982 1.00 0.55 N ATOM 47 CA THR 4 -0.354 -8.598 0.541 1.00 0.55 C ATOM 48 C THR 4 -0.320 -7.566 1.660 1.00 0.55 C ATOM 49 O THR 4 -0.007 -6.397 1.430 1.00 0.55 O ATOM 50 CB THR 4 -1.800 -8.769 0.039 1.00 0.55 C ATOM 51 OG1 THR 4 -1.819 -9.677 -1.071 1.00 0.55 O ATOM 52 CG2 THR 4 -2.375 -7.431 -0.397 1.00 0.55 C ATOM 60 N ARG 5 -0.645 -8.002 2.871 1.00 0.50 N ATOM 61 CA ARG 5 -0.565 -7.139 4.045 1.00 0.50 C ATOM 62 C ARG 5 0.862 -6.661 4.280 1.00 0.50 C ATOM 63 O ARG 5 1.087 -5.520 4.684 1.00 0.50 O ATOM 64 CB ARG 5 -1.062 -7.870 5.282 1.00 0.50 C ATOM 65 CG ARG 5 -2.560 -8.130 5.312 1.00 0.50 C ATOM 66 CD ARG 5 -2.951 -8.954 6.486 1.00 0.50 C ATOM 67 NE ARG 5 -4.388 -9.164 6.546 1.00 0.50 N ATOM 68 CZ ARG 5 -4.992 -10.119 7.281 1.00 0.50 C ATOM 69 NH1 ARG 5 -4.270 -10.940 8.012 1.00 0.50 N ATOM 70 NH2 ARG 5 -6.309 -10.229 7.268 1.00 0.50 N ATOM 84 N LYS 6 1.825 -7.540 4.025 1.00 0.25 N ATOM 85 CA LYS 6 3.235 -7.183 4.124 1.00 0.25 C ATOM 86 C LYS 6 3.599 -6.096 3.120 1.00 0.25 C ATOM 87 O LYS 6 4.318 -5.152 3.446 1.00 0.25 O ATOM 88 CB LYS 6 4.116 -8.414 3.910 1.00 0.25 C ATOM 89 CG LYS 6 4.069 -9.427 5.047 1.00 0.25 C ATOM 90 CD LYS 6 4.916 -10.651 4.732 1.00 0.25 C ATOM 91 CE LYS 6 4.797 -11.703 5.824 1.00 0.25 C ATOM 92 NZ LYS 6 5.568 -12.933 5.499 1.00 0.25 N ATOM 106 N LYS 7 3.102 -6.239 1.896 1.00 0.24 N ATOM 107 CA LYS 7 3.341 -5.249 0.852 1.00 0.24 C ATOM 108 C LYS 7 2.738 -3.901 1.221 1.00 0.24 C ATOM 109 O LYS 7 3.354 -2.856 1.013 1.00 0.24 O ATOM 110 CB LYS 7 2.772 -5.731 -0.483 1.00 0.24 C ATOM 111 CG LYS 7 3.559 -6.864 -1.130 1.00 0.24 C ATOM 112 CD LYS 7 2.959 -7.258 -2.471 1.00 0.24 C ATOM 113 CE LYS 7 3.768 -8.361 -3.138 1.00 0.24 C ATOM 114 NZ LYS 7 3.213 -8.732 -4.468 1.00 0.24 N ATOM 128 N CYS 8 1.529 -3.930 1.772 1.00 0.29 N ATOM 129 CA CYS 8 0.860 -2.714 2.219 1.00 0.29 C ATOM 130 C CYS 8 1.637 -2.040 3.343 1.00 0.29 C ATOM 131 O CYS 8 1.822 -0.823 3.341 1.00 0.29 O ATOM 132 CB CYS 8 -0.557 -3.024 2.701 1.00 0.29 C ATOM 133 SG CYS 8 -1.702 -3.486 1.378 1.00 0.29 S ATOM 139 N THR 9 2.091 -2.839 4.303 1.00 0.31 N ATOM 140 CA THR 9 2.879 -2.326 5.418 1.00 0.31 C ATOM 141 C THR 9 4.155 -1.655 4.927 1.00 0.31 C ATOM 142 O THR 9 4.526 -0.582 5.403 1.00 0.31 O ATOM 143 CB THR 9 3.232 -3.449 6.410 1.00 0.31 C ATOM 144 OG1 THR 9 2.028 -4.013 6.946 1.00 0.31 O ATOM 145 CG2 THR 9 4.085 -2.907 7.547 1.00 0.31 C ATOM 153 N GLU 10 4.824 -2.293 3.973 1.00 0.24 N ATOM 154 CA GLU 10 6.011 -1.718 3.354 1.00 0.24 C ATOM 155 C GLU 10 5.719 -0.337 2.779 1.00 0.24 C ATOM 156 O GLU 10 6.464 0.613 3.012 1.00 0.24 O ATOM 157 CB GLU 10 6.537 -2.638 2.251 1.00 0.24 C ATOM 158 CG GLU 10 7.748 -2.097 1.504 1.00 0.24 C ATOM 159 CD GLU 10 8.224 -3.019 0.415 1.00 0.24 C ATOM 160 OE1 GLU 10 7.813 -4.154 0.402 1.00 0.24 O ATOM 161 OE2 GLU 10 8.999 -2.586 -0.404 1.00 0.24 O ATOM 168 N MET 11 4.628 -0.234 2.028 1.00 0.25 N ATOM 169 CA MET 11 4.258 1.020 1.382 1.00 0.25 C ATOM 170 C MET 11 3.894 2.082 2.412 1.00 0.25 C ATOM 171 O MET 11 4.148 3.270 2.209 1.00 0.25 O ATOM 172 CB MET 11 3.096 0.794 0.416 1.00 0.25 C ATOM 173 CG MET 11 3.438 -0.074 -0.787 1.00 0.25 C ATOM 174 SD MET 11 4.786 0.606 -1.774 1.00 0.25 S ATOM 175 CE MET 11 3.933 1.901 -2.668 1.00 0.25 C ATOM 185 N LYS 12 3.298 1.648 3.517 1.00 0.30 N ATOM 186 CA LYS 12 2.954 2.553 4.608 1.00 0.30 C ATOM 187 C LYS 12 4.204 3.140 5.252 1.00 0.30 C ATOM 188 O LYS 12 4.232 4.316 5.614 1.00 0.30 O ATOM 189 CB LYS 12 2.111 1.829 5.659 1.00 0.30 C ATOM 190 CG LYS 12 0.683 1.529 5.222 1.00 0.30 C ATOM 191 CD LYS 12 -0.075 0.766 6.297 1.00 0.30 C ATOM 192 CE LYS 12 -1.500 0.460 5.861 1.00 0.30 C ATOM 193 NZ LYS 12 -2.255 -0.283 6.905 1.00 0.30 N ATOM 207 N LYS 13 5.235 2.315 5.391 1.00 0.35 N ATOM 208 CA LYS 13 6.495 2.756 5.978 1.00 0.35 C ATOM 209 C LYS 13 7.247 3.684 5.035 1.00 0.35 C ATOM 210 O LYS 13 7.830 4.681 5.464 1.00 0.35 O ATOM 211 CB LYS 13 7.367 1.552 6.339 1.00 0.35 C ATOM 212 CG LYS 13 6.860 0.740 7.523 1.00 0.35 C ATOM 213 CD LYS 13 7.774 -0.442 7.813 1.00 0.35 C ATOM 214 CE LYS 13 7.301 -1.221 9.032 1.00 0.35 C ATOM 215 NZ LYS 13 8.170 -2.395 9.313 1.00 0.35 N ATOM 229 N LYS 14 7.231 3.353 3.748 1.00 0.48 N ATOM 230 CA LYS 14 7.934 4.144 2.745 1.00 0.48 C ATOM 231 C LYS 14 7.166 5.415 2.408 1.00 0.48 C ATOM 232 O LYS 14 7.759 6.446 2.092 1.00 0.48 O ATOM 233 CB LYS 14 8.166 3.318 1.479 1.00 0.48 C ATOM 234 CG LYS 14 9.197 2.208 1.631 1.00 0.48 C ATOM 235 CD LYS 14 9.343 1.409 0.345 1.00 0.48 C ATOM 236 CE LYS 14 10.489 0.412 0.438 1.00 0.48 C ATOM 237 NZ LYS 14 10.575 -0.453 -0.769 1.00 0.48 N ATOM 251 N PHE 15 5.841 5.335 2.477 1.00 0.58 N ATOM 252 CA PHE 15 4.990 6.488 2.210 1.00 0.58 C ATOM 253 C PHE 15 4.056 6.767 3.381 1.00 0.58 C ATOM 254 O PHE 15 2.867 6.453 3.329 1.00 0.58 O ATOM 255 CB PHE 15 4.167 6.262 0.939 1.00 0.58 C ATOM 256 CG PHE 15 5.001 6.045 -0.292 1.00 0.58 C ATOM 257 CD1 PHE 15 5.288 4.763 -0.735 1.00 0.58 C ATOM 258 CD2 PHE 15 5.501 7.122 -1.008 1.00 0.58 C ATOM 259 CE1 PHE 15 6.055 4.562 -1.867 1.00 0.58 C ATOM 260 CE2 PHE 15 6.267 6.924 -2.140 1.00 0.58 C ATOM 261 CZ PHE 15 6.545 5.642 -2.569 1.00 0.58 C ATOM 271 N LYS 16 4.602 7.360 4.438 1.00 0.87 N ATOM 272 CA LYS 16 3.832 7.634 5.645 1.00 0.87 C ATOM 273 C LYS 16 2.870 8.796 5.433 1.00 0.87 C ATOM 274 O LYS 16 3.130 9.690 4.626 1.00 0.87 O ATOM 275 CB LYS 16 4.766 7.932 6.819 1.00 0.87 C ATOM 276 CG LYS 16 5.617 6.749 7.262 1.00 0.87 C ATOM 277 CD LYS 16 6.502 7.116 8.444 1.00 0.87 C ATOM 278 CE LYS 16 7.360 5.938 8.881 1.00 0.87 C ATOM 279 NZ LYS 16 8.247 6.290 10.024 1.00 0.87 N ATOM 293 N ASN 17 1.760 8.778 6.160 1.00 0.81 N ATOM 294 CA ASN 17 0.730 9.800 6.012 1.00 0.81 C ATOM 295 C ASN 17 0.118 9.768 4.619 1.00 0.81 C ATOM 296 O ASN 17 -0.286 10.800 4.083 1.00 0.81 O ATOM 297 CB ASN 17 1.296 11.175 6.317 1.00 0.81 C ATOM 298 CG ASN 17 1.811 11.291 7.724 1.00 0.81 C ATOM 299 OD1 ASN 17 1.201 10.772 8.665 1.00 0.81 O ATOM 300 ND2 ASN 17 2.922 11.963 7.886 1.00 0.81 N ATOM 307 N CYS 18 0.052 8.576 4.034 1.00 0.51 N ATOM 308 CA CYS 18 -0.595 8.392 2.740 1.00 0.51 C ATOM 309 C CYS 18 -1.691 7.337 2.818 1.00 0.51 C ATOM 310 O CYS 18 -1.700 6.503 3.724 1.00 0.51 O ATOM 311 CB CYS 18 0.428 7.980 1.682 1.00 0.51 C ATOM 312 SG CYS 18 1.720 9.210 1.384 1.00 0.51 S ATOM 318 N GLU 19 -2.614 7.380 1.864 1.00 0.45 N ATOM 319 CA GLU 19 -3.715 6.425 1.820 1.00 0.45 C ATOM 320 C GLU 19 -3.301 5.140 1.115 1.00 0.45 C ATOM 321 O GLU 19 -3.182 5.103 -0.110 1.00 0.45 O ATOM 322 CB GLU 19 -4.925 7.038 1.113 1.00 0.45 C ATOM 323 CG GLU 19 -6.155 6.142 1.079 1.00 0.45 C ATOM 324 CD GLU 19 -7.337 6.794 0.418 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.207 7.912 -0.018 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.371 6.173 0.349 1.00 0.45 O ATOM 333 N VAL 20 -3.083 4.086 1.895 1.00 0.38 N ATOM 334 CA VAL 20 -2.595 2.822 1.358 1.00 0.38 C ATOM 335 C VAL 20 -3.696 1.771 1.337 1.00 0.38 C ATOM 336 O VAL 20 -4.169 1.331 2.385 1.00 0.38 O ATOM 337 CB VAL 20 -1.412 2.305 2.197 1.00 0.38 C ATOM 338 CG1 VAL 20 -0.900 0.986 1.641 1.00 0.38 C ATOM 339 CG2 VAL 20 -0.303 3.345 2.225 1.00 0.38 C ATOM 349 N ARG 21 -4.103 1.370 0.136 1.00 0.45 N ATOM 350 CA ARG 21 -5.140 0.359 -0.023 1.00 0.45 C ATOM 351 C ARG 21 -4.740 -0.685 -1.058 1.00 0.45 C ATOM 352 O ARG 21 -4.017 -0.385 -2.009 1.00 0.45 O ATOM 353 CB ARG 21 -6.456 1.002 -0.439 1.00 0.45 C ATOM 354 CG ARG 21 -7.052 1.956 0.583 1.00 0.45 C ATOM 355 CD ARG 21 -8.354 2.506 0.126 1.00 0.45 C ATOM 356 NE ARG 21 -8.862 3.523 1.033 1.00 0.45 N ATOM 357 CZ ARG 21 -9.604 3.268 2.129 1.00 0.45 C ATOM 358 NH1 ARG 21 -9.914 2.030 2.439 1.00 0.45 N ATOM 359 NH2 ARG 21 -10.018 4.265 2.892 1.00 0.45 N ATOM 373 N CYS 22 -5.212 -1.912 -0.867 1.00 0.75 N ATOM 374 CA CYS 22 -5.017 -2.970 -1.851 1.00 0.75 C ATOM 375 C CYS 22 -6.213 -3.078 -2.788 1.00 0.75 C ATOM 376 O CYS 22 -7.316 -2.646 -2.453 1.00 0.75 O ATOM 377 CB CYS 22 -4.795 -4.314 -1.160 1.00 0.75 C ATOM 378 SG CYS 22 -6.229 -4.916 -0.237 1.00 0.75 S ATOM 384 N ASP 23 -5.988 -3.656 -3.963 1.00 0.73 N ATOM 385 CA ASP 23 -7.051 -3.835 -4.945 1.00 0.73 C ATOM 386 C ASP 23 -7.897 -5.061 -4.624 1.00 0.73 C ATOM 387 O ASP 23 -7.620 -5.784 -3.666 1.00 0.73 O ATOM 388 CB ASP 23 -6.465 -3.967 -6.353 1.00 0.73 C ATOM 389 CG ASP 23 -5.670 -5.251 -6.546 1.00 0.73 C ATOM 390 OD1 ASP 23 -5.971 -6.218 -5.886 1.00 0.73 O ATOM 391 OD2 ASP 23 -4.771 -5.254 -7.352 1.00 0.73 O ATOM 396 N GLU 24 -8.927 -5.290 -5.430 1.00 1.11 N ATOM 397 CA GLU 24 -9.894 -6.346 -5.156 1.00 1.11 C ATOM 398 C GLU 24 -9.211 -7.704 -5.052 1.00 1.11 C ATOM 399 O GLU 24 -9.545 -8.513 -4.186 1.00 1.11 O ATOM 400 CB GLU 24 -10.966 -6.386 -6.248 1.00 1.11 C ATOM 401 CG GLU 24 -12.052 -7.428 -6.026 1.00 1.11 C ATOM 402 CD GLU 24 -13.117 -7.398 -7.087 1.00 1.11 C ATOM 403 OE1 GLU 24 -13.025 -6.580 -7.971 1.00 1.11 O ATOM 404 OE2 GLU 24 -14.023 -8.194 -7.013 1.00 1.11 O ATOM 411 N SER 25 -8.254 -7.949 -5.940 1.00 0.67 N ATOM 412 CA SER 25 -7.593 -9.246 -6.016 1.00 0.67 C ATOM 413 C SER 25 -6.492 -9.364 -4.969 1.00 0.67 C ATOM 414 O SER 25 -5.895 -10.427 -4.799 1.00 0.67 O ATOM 415 CB SER 25 -7.010 -9.456 -7.400 1.00 0.67 C ATOM 416 OG SER 25 -5.973 -8.547 -7.651 1.00 0.67 O ATOM 422 N ASN 26 -6.228 -8.267 -4.269 1.00 0.30 N ATOM 423 CA ASN 26 -5.137 -8.217 -3.303 1.00 0.30 C ATOM 424 C ASN 26 -3.789 -8.423 -3.983 1.00 0.30 C ATOM 425 O ASN 26 -2.870 -8.998 -3.401 1.00 0.30 O ATOM 426 CB ASN 26 -5.345 -9.248 -2.208 1.00 0.30 C ATOM 427 CG ASN 26 -6.623 -9.031 -1.447 1.00 0.30 C ATOM 428 OD1 ASN 26 -6.929 -7.908 -1.031 1.00 0.30 O ATOM 429 ND2 ASN 26 -7.374 -10.085 -1.254 1.00 0.30 N ATOM 436 N HIS 27 -3.679 -7.950 -5.220 1.00 0.61 N ATOM 437 CA HIS 27 -2.466 -8.139 -6.007 1.00 0.61 C ATOM 438 C HIS 27 -1.595 -6.891 -5.985 1.00 0.61 C ATOM 439 O HIS 27 -0.414 -6.951 -5.643 1.00 0.61 O ATOM 440 CB HIS 27 -2.811 -8.504 -7.455 1.00 0.61 C ATOM 441 CG HIS 27 -1.612 -8.788 -8.305 1.00 0.61 C ATOM 442 ND1 HIS 27 -0.785 -9.871 -8.086 1.00 0.61 N ATOM 443 CD2 HIS 27 -1.101 -8.134 -9.374 1.00 0.61 C ATOM 444 CE1 HIS 27 0.184 -9.869 -8.985 1.00 0.61 C ATOM 445 NE2 HIS 27 0.015 -8.826 -9.777 1.00 0.61 N ATOM 453 N CYS 28 -2.184 -5.758 -6.352 1.00 0.42 N ATOM 454 CA CYS 28 -1.464 -4.490 -6.372 1.00 0.42 C ATOM 455 C CYS 28 -1.857 -3.616 -5.188 1.00 0.42 C ATOM 456 O CYS 28 -2.955 -3.745 -4.645 1.00 0.42 O ATOM 457 CB CYS 28 -1.741 -3.734 -7.671 1.00 0.42 C ATOM 458 SG CYS 28 -1.149 -4.579 -9.157 1.00 0.42 S ATOM 464 N VAL 29 -0.954 -2.725 -4.790 1.00 0.29 N ATOM 465 CA VAL 29 -1.235 -1.774 -3.721 1.00 0.29 C ATOM 466 C VAL 29 -1.276 -0.347 -4.251 1.00 0.29 C ATOM 467 O VAL 29 -0.314 0.130 -4.855 1.00 0.29 O ATOM 468 CB VAL 29 -0.165 -1.878 -2.619 1.00 0.29 C ATOM 469 CG1 VAL 29 -0.441 -0.871 -1.511 1.00 0.29 C ATOM 470 CG2 VAL 29 -0.129 -3.294 -2.063 1.00 0.29 C ATOM 480 N GLU 30 -2.395 0.332 -4.024 1.00 0.26 N ATOM 481 CA GLU 30 -2.559 1.712 -4.464 1.00 0.26 C ATOM 482 C GLU 30 -2.325 2.688 -3.319 1.00 0.26 C ATOM 483 O GLU 30 -3.017 2.643 -2.301 1.00 0.26 O ATOM 484 CB GLU 30 -3.956 1.923 -5.050 1.00 0.26 C ATOM 485 CG GLU 30 -4.225 3.338 -5.544 1.00 0.26 C ATOM 486 CD GLU 30 -5.614 3.513 -6.090 1.00 0.26 C ATOM 487 OE1 GLU 30 -6.310 2.535 -6.218 1.00 0.26 O ATOM 488 OE2 GLU 30 -5.980 4.628 -6.382 1.00 0.26 O ATOM 495 N VAL 31 -1.345 3.569 -3.490 1.00 0.32 N ATOM 496 CA VAL 31 -0.992 4.534 -2.455 1.00 0.32 C ATOM 497 C VAL 31 -1.171 5.962 -2.950 1.00 0.32 C ATOM 498 O VAL 31 -0.526 6.383 -3.911 1.00 0.32 O ATOM 499 CB VAL 31 0.467 4.327 -2.006 1.00 0.32 C ATOM 500 CG1 VAL 31 0.846 5.346 -0.943 1.00 0.32 C ATOM 501 CG2 VAL 31 0.653 2.910 -1.487 1.00 0.32 C ATOM 511 N ARG 32 -2.051 6.707 -2.289 1.00 0.30 N ATOM 512 CA ARG 32 -2.294 8.101 -2.641 1.00 0.30 C ATOM 513 C ARG 32 -1.676 9.044 -1.618 1.00 0.30 C ATOM 514 O ARG 32 -2.049 9.033 -0.444 1.00 0.30 O ATOM 515 CB ARG 32 -3.787 8.374 -2.743 1.00 0.30 C ATOM 516 CG ARG 32 -4.151 9.787 -3.172 1.00 0.30 C ATOM 517 CD ARG 32 -5.622 9.976 -3.251 1.00 0.30 C ATOM 518 NE ARG 32 -6.247 9.919 -1.938 1.00 0.30 N ATOM 519 CZ ARG 32 -6.394 10.975 -1.115 1.00 0.30 C ATOM 520 NH1 ARG 32 -5.958 12.159 -1.480 1.00 0.30 N ATOM 521 NH2 ARG 32 -6.978 10.819 0.061 1.00 0.30 N ATOM 535 N CYS 33 -0.730 9.861 -2.069 1.00 0.67 N ATOM 536 CA CYS 33 -0.166 10.914 -1.233 1.00 0.67 C ATOM 537 C CYS 33 -1.088 12.126 -1.176 1.00 0.67 C ATOM 538 O CYS 33 -1.568 12.503 -0.107 1.00 0.67 O ATOM 539 CB CYS 33 1.201 11.347 -1.763 1.00 0.67 C ATOM 540 SG CYS 33 2.014 12.617 -0.763 1.00 0.67 S ATOM 546 N SER 34 -1.333 12.730 -2.334 1.00 1.30 N ATOM 547 CA SER 34 -2.326 13.793 -2.447 1.00 1.30 C ATOM 548 C SER 34 -2.918 13.846 -3.849 1.00 1.30 C ATOM 549 O SER 34 -4.060 13.442 -4.068 1.00 1.30 O ATOM 550 CB SER 34 -1.701 15.130 -2.102 1.00 1.30 C ATOM 551 OG SER 34 -0.693 15.465 -3.016 1.00 1.30 O ATOM 557 N ASP 35 -2.135 14.347 -4.798 1.00 2.34 N ATOM 558 CA ASP 35 -2.492 14.266 -6.210 1.00 2.34 C ATOM 559 C ASP 35 -1.694 13.179 -6.919 1.00 2.34 C ATOM 560 O ASP 35 -2.026 12.781 -8.036 1.00 2.34 O ATOM 561 CB ASP 35 -2.258 15.612 -6.900 1.00 2.34 C ATOM 562 CG ASP 35 -3.168 16.714 -6.374 1.00 2.34 C ATOM 563 OD1 ASP 35 -4.268 16.410 -5.977 1.00 2.34 O ATOM 564 OD2 ASP 35 -2.754 17.849 -6.375 1.00 2.34 O ATOM 569 N THR 36 -0.641 12.703 -6.263 1.00 0.51 N ATOM 570 CA THR 36 0.224 11.681 -6.842 1.00 0.51 C ATOM 571 C THR 36 -0.029 10.320 -6.207 1.00 0.51 C ATOM 572 O THR 36 -0.083 10.196 -4.983 1.00 0.51 O ATOM 573 CB THR 36 1.708 12.058 -6.685 1.00 0.51 C ATOM 574 OG1 THR 36 1.970 13.283 -7.382 1.00 0.51 O ATOM 575 CG2 THR 36 2.599 10.960 -7.245 1.00 0.51 C ATOM 583 N LYS 37 -0.184 9.301 -7.046 1.00 0.39 N ATOM 584 CA LYS 37 -0.416 7.943 -6.567 1.00 0.39 C ATOM 585 C LYS 37 0.773 7.041 -6.870 1.00 0.39 C ATOM 586 O LYS 37 1.557 7.316 -7.780 1.00 0.39 O ATOM 587 CB LYS 37 -1.688 7.366 -7.190 1.00 0.39 C ATOM 588 CG LYS 37 -2.973 8.045 -6.739 1.00 0.39 C ATOM 589 CD LYS 37 -4.199 7.334 -7.293 1.00 0.39 C ATOM 590 CE LYS 37 -5.485 7.953 -6.766 1.00 0.39 C ATOM 591 NZ LYS 37 -6.690 7.212 -7.232 1.00 0.39 N ATOM 605 N TYR 38 0.903 5.963 -6.105 1.00 0.26 N ATOM 606 CA TYR 38 1.958 4.983 -6.334 1.00 0.26 C ATOM 607 C TYR 38 1.388 3.574 -6.439 1.00 0.26 C ATOM 608 O TYR 38 0.397 3.246 -5.787 1.00 0.26 O ATOM 609 CB TYR 38 3.003 5.050 -5.218 1.00 0.26 C ATOM 610 CG TYR 38 3.592 6.430 -5.017 1.00 0.26 C ATOM 611 CD1 TYR 38 3.005 7.311 -4.121 1.00 0.26 C ATOM 612 CD2 TYR 38 4.720 6.812 -5.727 1.00 0.26 C ATOM 613 CE1 TYR 38 3.543 8.570 -3.937 1.00 0.26 C ATOM 614 CE2 TYR 38 5.259 8.071 -5.543 1.00 0.26 C ATOM 615 CZ TYR 38 4.673 8.948 -4.653 1.00 0.26 C ATOM 616 OH TYR 38 5.210 10.201 -4.469 1.00 0.26 O ATOM 626 N THR 39 2.020 2.746 -7.262 1.00 0.37 N ATOM 627 CA THR 39 1.554 1.380 -7.481 1.00 0.37 C ATOM 628 C THR 39 2.648 0.369 -7.163 1.00 0.37 C ATOM 629 O THR 39 3.743 0.427 -7.721 1.00 0.37 O ATOM 630 CB THR 39 1.075 1.185 -8.931 1.00 0.37 C ATOM 631 OG1 THR 39 -0.005 2.088 -9.206 1.00 0.37 O ATOM 632 CG2 THR 39 0.603 -0.245 -9.148 1.00 0.37 C ATOM 640 N LEU 40 2.343 -0.560 -6.263 1.00 0.31 N ATOM 641 CA LEU 40 3.236 -1.677 -5.982 1.00 0.31 C ATOM 642 C LEU 40 2.650 -2.991 -6.483 1.00 0.31 C ATOM 643 O LEU 40 1.529 -3.357 -6.130 1.00 0.31 O ATOM 644 CB LEU 40 3.507 -1.774 -4.476 1.00 0.31 C ATOM 645 CG LEU 40 4.361 -2.966 -4.028 1.00 0.31 C ATOM 646 CD1 LEU 40 5.763 -2.833 -4.607 1.00 0.31 C ATOM 647 CD2 LEU 40 4.400 -3.021 -2.508 1.00 0.31 C ATOM 659 N CYS 41 3.415 -3.697 -7.309 1.00 0.44 N ATOM 660 CA CYS 41 2.970 -4.969 -7.867 1.00 0.44 C ATOM 661 C CYS 41 3.589 -6.144 -7.120 1.00 0.44 C ATOM 662 O CYS 41 3.126 -6.498 -6.070 1.00 0.44 O ATOM 663 OXT CYS 41 4.538 -6.715 -7.581 1.00 0.44 O ATOM 664 CB CYS 41 3.335 -5.064 -9.348 1.00 0.44 C ATOM 665 SG CYS 41 2.836 -6.615 -10.133 1.00 0.44 S TER END