####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS043_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.89 1.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.89 1.89 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.92 2.64 LCS_AVERAGE: 39.92 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 16 41 41 3 3 4 20 26 33 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 6 17 21 30 35 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 6 17 27 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 10 17 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 41 41 10 18 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 41 41 11 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 10 21 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 8 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 4 17 26 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 7 41 41 4 7 21 30 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 7 41 41 4 6 12 24 34 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 41 41 3 8 11 13 18 32 36 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 8 41 41 3 4 8 9 13 30 37 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 15 41 41 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 15 41 41 9 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 3 9 28 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 3 17 23 32 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 11 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 6 18 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 6 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 10 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 5 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 79.97 ( 39.92 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 25 30 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 29.27 60.98 73.17 82.93 87.80 90.24 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.66 0.84 1.10 1.25 1.34 1.61 1.77 1.73 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 GDT RMS_ALL_AT 2.28 2.11 2.07 1.96 1.95 1.94 1.90 1.90 1.90 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 1.89 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.183 0 0.129 0.774 6.734 4.545 3.333 5.459 LGA Q 2 Q 2 3.203 0 0.195 0.947 3.857 28.182 21.010 3.383 LGA E 3 E 3 1.967 0 0.022 1.419 7.259 51.364 27.273 7.259 LGA T 4 T 4 1.867 0 0.024 1.104 3.391 54.545 46.494 3.391 LGA R 5 R 5 1.841 0 0.016 0.229 5.235 58.182 28.099 5.235 LGA K 6 K 6 1.195 0 0.026 1.272 5.710 69.545 45.051 5.464 LGA K 7 K 7 0.334 0 0.040 0.659 3.033 100.000 64.646 3.033 LGA C 8 C 8 0.469 0 0.028 0.760 2.440 90.909 80.606 2.440 LGA T 9 T 9 1.150 0 0.014 0.099 2.029 69.545 61.818 1.638 LGA E 10 E 10 1.233 0 0.022 0.453 2.135 65.455 57.576 1.503 LGA M 11 M 11 0.689 0 0.037 0.102 1.230 81.818 77.727 1.230 LGA K 12 K 12 0.595 0 0.021 0.662 1.722 77.727 71.313 1.555 LGA K 13 K 13 1.371 0 0.027 0.579 2.382 58.182 57.576 2.382 LGA K 14 K 14 1.537 0 0.024 0.640 3.641 54.545 54.545 3.641 LGA F 15 F 15 1.081 0 0.128 0.318 2.859 69.545 61.488 2.434 LGA K 16 K 16 1.970 0 0.672 1.359 5.367 40.909 28.889 5.361 LGA N 17 N 17 1.285 0 0.293 0.555 3.049 82.273 59.318 3.049 LGA C 18 C 18 1.433 0 0.022 0.041 1.506 61.818 63.030 1.401 LGA E 19 E 19 1.386 0 0.155 0.426 2.423 69.545 57.778 1.669 LGA V 20 V 20 1.413 0 0.018 0.047 1.761 58.182 57.143 1.347 LGA R 21 R 21 1.400 0 0.022 1.410 8.352 58.182 29.752 8.352 LGA C 22 C 22 2.878 0 0.039 0.750 5.264 32.727 23.636 5.264 LGA D 23 D 23 3.426 0 0.011 1.237 5.478 14.545 11.591 4.155 LGA E 24 E 24 4.714 0 0.023 0.615 10.530 13.182 5.859 9.153 LGA S 25 S 25 1.309 0 0.211 0.723 5.567 45.000 31.818 5.567 LGA N 26 N 26 4.762 0 0.216 1.170 9.164 10.455 5.227 6.176 LGA H 27 H 27 0.946 0 0.452 1.150 7.584 86.364 39.636 7.584 LGA C 28 C 28 0.630 0 0.124 0.168 0.940 81.818 81.818 0.940 LGA V 29 V 29 0.572 0 0.043 0.061 0.699 86.364 84.416 0.699 LGA E 30 E 30 0.485 0 0.091 0.644 2.082 90.909 79.192 1.091 LGA V 31 V 31 0.473 0 0.083 0.110 0.578 95.455 94.805 0.578 LGA R 32 R 32 0.764 0 0.118 0.964 6.929 77.727 45.950 6.929 LGA C 33 C 33 0.471 0 0.456 0.519 2.034 80.000 80.606 0.858 LGA S 34 S 34 1.940 0 0.227 0.738 3.130 39.545 39.091 2.398 LGA D 35 D 35 2.315 0 0.130 1.019 3.781 41.364 32.500 3.781 LGA T 36 T 36 1.621 0 0.284 1.138 4.419 65.909 49.610 4.419 LGA K 37 K 37 0.358 0 0.169 1.556 5.134 78.636 58.586 5.134 LGA Y 38 Y 38 1.217 0 0.077 1.208 6.951 82.273 45.909 6.951 LGA T 39 T 39 0.821 0 0.063 0.090 2.222 74.091 62.338 1.674 LGA L 40 L 40 0.247 0 0.072 0.965 3.608 91.364 62.955 3.608 LGA C 41 C 41 1.205 0 0.107 0.819 4.008 82.273 64.935 4.008 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.890 1.855 2.939 62.805 50.121 27.273 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.77 85.366 91.795 2.140 LGA_LOCAL RMSD: 1.769 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.899 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.890 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.943397 * X + 0.248188 * Y + 0.220011 * Z + -3.873218 Y_new = 0.036365 * X + 0.581950 * Y + -0.812411 * Z + -13.048220 Z_new = -0.329666 * X + 0.774427 * Y + 0.539984 * Z + 2.646221 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.038528 0.335950 0.961905 [DEG: 2.2075 19.2485 55.1131 ] ZXZ: 0.264469 1.000378 -0.402455 [DEG: 15.1529 57.3174 -23.0590 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS043_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.77 91.795 1.89 REMARK ---------------------------------------------------------- MOLECULE T0955TS043_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 1 N SER 1 -3.873 -13.048 2.646 1.00 0.90 N ATOM 2 CA SER 1 -2.498 -12.995 2.166 1.00 0.90 C ATOM 3 C SER 1 -1.626 -12.149 3.084 1.00 0.90 C ATOM 4 O SER 1 -1.714 -10.921 3.082 1.00 0.90 O ATOM 5 CB SER 1 -2.458 -12.434 0.758 1.00 0.90 C ATOM 6 OG SER 1 -1.138 -12.258 0.325 1.00 0.90 O ATOM 14 N GLN 2 -0.783 -12.812 3.868 1.00 0.65 N ATOM 15 CA GLN 2 0.135 -12.120 4.765 1.00 0.65 C ATOM 16 C GLN 2 1.199 -11.359 3.984 1.00 0.65 C ATOM 17 O GLN 2 1.671 -10.309 4.421 1.00 0.65 O ATOM 18 CB GLN 2 0.800 -13.113 5.722 1.00 0.65 C ATOM 19 CG GLN 2 1.657 -12.465 6.795 1.00 0.65 C ATOM 20 CD GLN 2 0.855 -11.558 7.708 1.00 0.65 C ATOM 21 OE1 GLN 2 -0.267 -11.888 8.104 1.00 0.65 O ATOM 22 NE2 GLN 2 1.424 -10.407 8.048 1.00 0.65 N ATOM 31 N GLU 3 1.573 -11.894 2.827 1.00 0.47 N ATOM 32 CA GLU 3 2.569 -11.257 1.974 1.00 0.47 C ATOM 33 C GLU 3 2.049 -9.943 1.405 1.00 0.47 C ATOM 34 O GLU 3 2.805 -8.989 1.226 1.00 0.47 O ATOM 35 CB GLU 3 2.974 -12.194 0.835 1.00 0.47 C ATOM 36 CG GLU 3 3.743 -13.430 1.280 1.00 0.47 C ATOM 37 CD GLU 3 5.034 -13.097 1.974 1.00 0.47 C ATOM 38 OE1 GLU 3 5.781 -12.305 1.451 1.00 0.47 O ATOM 39 OE2 GLU 3 5.273 -13.635 3.030 1.00 0.47 O ATOM 46 N THR 4 0.751 -9.901 1.119 1.00 0.55 N ATOM 47 CA THR 4 0.094 -8.662 0.722 1.00 0.55 C ATOM 48 C THR 4 0.101 -7.646 1.857 1.00 0.55 C ATOM 49 O THR 4 0.324 -6.456 1.637 1.00 0.55 O ATOM 50 CB THR 4 -1.355 -8.923 0.271 1.00 0.55 C ATOM 51 OG1 THR 4 -1.355 -9.805 -0.859 1.00 0.55 O ATOM 52 CG2 THR 4 -2.037 -7.618 -0.110 1.00 0.55 C ATOM 60 N ARG 5 -0.142 -8.124 3.073 1.00 0.50 N ATOM 61 CA ARG 5 -0.071 -7.277 4.257 1.00 0.50 C ATOM 62 C ARG 5 1.327 -6.699 4.439 1.00 0.50 C ATOM 63 O ARG 5 1.486 -5.549 4.847 1.00 0.50 O ATOM 64 CB ARG 5 -0.458 -8.062 5.502 1.00 0.50 C ATOM 65 CG ARG 5 -1.930 -8.428 5.596 1.00 0.50 C ATOM 66 CD ARG 5 -2.206 -9.297 6.768 1.00 0.50 C ATOM 67 NE ARG 5 -3.622 -9.608 6.891 1.00 0.50 N ATOM 68 CZ ARG 5 -4.123 -10.608 7.642 1.00 0.50 C ATOM 69 NH1 ARG 5 -3.314 -11.385 8.328 1.00 0.50 N ATOM 70 NH2 ARG 5 -5.428 -10.809 7.689 1.00 0.50 N ATOM 84 N LYS 6 2.338 -7.505 4.133 1.00 0.25 N ATOM 85 CA LYS 6 3.721 -7.045 4.168 1.00 0.25 C ATOM 86 C LYS 6 3.956 -5.931 3.156 1.00 0.25 C ATOM 87 O LYS 6 4.619 -4.938 3.455 1.00 0.25 O ATOM 88 CB LYS 6 4.679 -8.208 3.902 1.00 0.25 C ATOM 89 CG LYS 6 4.754 -9.231 5.028 1.00 0.25 C ATOM 90 CD LYS 6 5.668 -10.390 4.660 1.00 0.25 C ATOM 91 CE LYS 6 5.666 -11.462 5.741 1.00 0.25 C ATOM 92 NZ LYS 6 6.500 -12.635 5.363 1.00 0.25 N ATOM 106 N LYS 7 3.409 -6.102 1.958 1.00 0.24 N ATOM 107 CA LYS 7 3.526 -5.092 0.912 1.00 0.24 C ATOM 108 C LYS 7 2.852 -3.791 1.324 1.00 0.24 C ATOM 109 O LYS 7 3.378 -2.704 1.083 1.00 0.24 O ATOM 110 CB LYS 7 2.924 -5.606 -0.397 1.00 0.24 C ATOM 111 CG LYS 7 3.752 -6.678 -1.093 1.00 0.24 C ATOM 112 CD LYS 7 3.106 -7.113 -2.400 1.00 0.24 C ATOM 113 CE LYS 7 3.941 -8.172 -3.105 1.00 0.24 C ATOM 114 NZ LYS 7 3.335 -8.588 -4.400 1.00 0.24 N ATOM 128 N CYS 8 1.683 -3.907 1.946 1.00 0.29 N ATOM 129 CA CYS 8 0.954 -2.741 2.429 1.00 0.29 C ATOM 130 C CYS 8 1.736 -2.014 3.516 1.00 0.29 C ATOM 131 O CYS 8 1.834 -0.787 3.506 1.00 0.29 O ATOM 132 CB CYS 8 -0.412 -3.152 2.980 1.00 0.29 C ATOM 133 SG CYS 8 -1.586 -3.693 1.714 1.00 0.29 S ATOM 139 N THR 9 2.289 -2.777 4.451 1.00 0.31 N ATOM 140 CA THR 9 3.101 -2.211 5.522 1.00 0.31 C ATOM 141 C THR 9 4.299 -1.454 4.964 1.00 0.31 C ATOM 142 O THR 9 4.621 -0.357 5.421 1.00 0.31 O ATOM 143 CB THR 9 3.586 -3.306 6.490 1.00 0.31 C ATOM 144 OG1 THR 9 2.455 -3.950 7.092 1.00 0.31 O ATOM 145 CG2 THR 9 4.462 -2.707 7.578 1.00 0.31 C ATOM 153 N GLU 10 4.955 -2.045 3.972 1.00 0.24 N ATOM 154 CA GLU 10 6.063 -1.389 3.288 1.00 0.24 C ATOM 155 C GLU 10 5.643 -0.031 2.738 1.00 0.24 C ATOM 156 O GLU 10 6.344 0.965 2.916 1.00 0.24 O ATOM 157 CB GLU 10 6.586 -2.270 2.151 1.00 0.24 C ATOM 158 CG GLU 10 7.735 -1.660 1.360 1.00 0.24 C ATOM 159 CD GLU 10 8.201 -2.540 0.234 1.00 0.24 C ATOM 160 OE1 GLU 10 7.775 -3.668 0.171 1.00 0.24 O ATOM 161 OE2 GLU 10 8.986 -2.084 -0.564 1.00 0.24 O ATOM 168 N MET 11 4.495 0.002 2.070 1.00 0.25 N ATOM 169 CA MET 11 3.991 1.233 1.474 1.00 0.25 C ATOM 170 C MET 11 3.637 2.258 2.544 1.00 0.25 C ATOM 171 O MET 11 3.823 3.460 2.352 1.00 0.25 O ATOM 172 CB MET 11 2.775 0.937 0.598 1.00 0.25 C ATOM 173 CG MET 11 3.087 0.139 -0.661 1.00 0.25 C ATOM 174 SD MET 11 4.193 1.015 -1.784 1.00 0.25 S ATOM 175 CE MET 11 5.783 0.393 -1.246 1.00 0.25 C ATOM 185 N LYS 12 3.124 1.776 3.670 1.00 0.30 N ATOM 186 CA LYS 12 2.770 2.647 4.785 1.00 0.30 C ATOM 187 C LYS 12 4.005 3.322 5.371 1.00 0.30 C ATOM 188 O LYS 12 3.951 4.478 5.790 1.00 0.30 O ATOM 189 CB LYS 12 2.038 1.858 5.871 1.00 0.30 C ATOM 190 CG LYS 12 0.620 1.444 5.500 1.00 0.30 C ATOM 191 CD LYS 12 -0.022 0.619 6.605 1.00 0.30 C ATOM 192 CE LYS 12 -1.429 0.183 6.225 1.00 0.30 C ATOM 193 NZ LYS 12 -2.070 -0.624 7.298 1.00 0.30 N ATOM 207 N LYS 13 5.115 2.594 5.395 1.00 0.35 N ATOM 208 CA LYS 13 6.366 3.120 5.929 1.00 0.35 C ATOM 209 C LYS 13 7.034 4.064 4.938 1.00 0.35 C ATOM 210 O LYS 13 7.556 5.112 5.318 1.00 0.35 O ATOM 211 CB LYS 13 7.316 1.979 6.293 1.00 0.35 C ATOM 212 CG LYS 13 6.889 1.166 7.508 1.00 0.35 C ATOM 213 CD LYS 13 7.880 0.051 7.804 1.00 0.35 C ATOM 214 CE LYS 13 7.487 -0.724 9.053 1.00 0.35 C ATOM 215 NZ LYS 13 8.433 -1.835 9.339 1.00 0.35 N ATOM 229 N LYS 14 7.015 3.685 3.664 1.00 0.48 N ATOM 230 CA LYS 14 7.682 4.460 2.625 1.00 0.48 C ATOM 231 C LYS 14 6.851 5.672 2.223 1.00 0.48 C ATOM 232 O LYS 14 7.395 6.704 1.828 1.00 0.48 O ATOM 233 CB LYS 14 7.962 3.586 1.401 1.00 0.48 C ATOM 234 CG LYS 14 9.058 2.548 1.607 1.00 0.48 C ATOM 235 CD LYS 14 9.294 1.735 0.343 1.00 0.48 C ATOM 236 CE LYS 14 10.501 0.821 0.489 1.00 0.48 C ATOM 237 NZ LYS 14 10.710 -0.023 -0.720 1.00 0.48 N ATOM 251 N PHE 15 5.534 5.541 2.326 1.00 0.58 N ATOM 252 CA PHE 15 4.628 6.640 2.014 1.00 0.58 C ATOM 253 C PHE 15 3.810 7.044 3.236 1.00 0.58 C ATOM 254 O PHE 15 2.641 6.682 3.358 1.00 0.58 O ATOM 255 CB PHE 15 3.688 6.250 0.872 1.00 0.58 C ATOM 256 CG PHE 15 4.398 5.924 -0.411 1.00 0.58 C ATOM 257 CD1 PHE 15 4.795 4.624 -0.690 1.00 0.58 C ATOM 258 CD2 PHE 15 4.671 6.915 -1.342 1.00 0.58 C ATOM 259 CE1 PHE 15 5.448 4.323 -1.870 1.00 0.58 C ATOM 260 CE2 PHE 15 5.322 6.617 -2.522 1.00 0.58 C ATOM 261 CZ PHE 15 5.711 5.319 -2.787 1.00 0.58 C ATOM 271 N LYS 16 4.435 7.793 4.137 1.00 0.87 N ATOM 272 CA LYS 16 3.773 8.230 5.361 1.00 0.87 C ATOM 273 C LYS 16 2.721 9.293 5.068 1.00 0.87 C ATOM 274 O LYS 16 2.878 10.099 4.151 1.00 0.87 O ATOM 275 CB LYS 16 4.796 8.765 6.363 1.00 0.87 C ATOM 276 CG LYS 16 5.757 7.712 6.903 1.00 0.87 C ATOM 277 CD LYS 16 6.726 8.314 7.909 1.00 0.87 C ATOM 278 CE LYS 16 7.693 7.266 8.442 1.00 0.87 C ATOM 279 NZ LYS 16 8.657 7.844 9.417 1.00 0.87 N ATOM 293 N ASN 17 1.650 9.291 5.854 1.00 0.81 N ATOM 294 CA ASN 17 0.547 10.223 5.650 1.00 0.81 C ATOM 295 C ASN 17 -0.129 9.991 4.306 1.00 0.81 C ATOM 296 O ASN 17 -0.646 10.924 3.690 1.00 0.81 O ATOM 297 CB ASN 17 1.033 11.656 5.763 1.00 0.81 C ATOM 298 CG ASN 17 1.611 11.966 7.117 1.00 0.81 C ATOM 299 OD1 ASN 17 1.092 11.516 8.144 1.00 0.81 O ATOM 300 ND2 ASN 17 2.676 12.726 7.136 1.00 0.81 N ATOM 307 N CYS 18 -0.124 8.740 3.854 1.00 0.51 N ATOM 308 CA CYS 18 -0.815 8.367 2.626 1.00 0.51 C ATOM 309 C CYS 18 -1.770 7.205 2.864 1.00 0.51 C ATOM 310 O CYS 18 -1.647 6.479 3.852 1.00 0.51 O ATOM 311 CB CYS 18 0.189 7.981 1.540 1.00 0.51 C ATOM 312 SG CYS 18 1.323 9.311 1.075 1.00 0.51 S ATOM 318 N GLU 19 -2.723 7.032 1.954 1.00 0.45 N ATOM 319 CA GLU 19 -3.700 5.955 2.062 1.00 0.45 C ATOM 320 C GLU 19 -3.250 4.722 1.292 1.00 0.45 C ATOM 321 O GLU 19 -3.083 4.767 0.072 1.00 0.45 O ATOM 322 CB GLU 19 -5.064 6.420 1.549 1.00 0.45 C ATOM 323 CG GLU 19 -6.167 5.376 1.659 1.00 0.45 C ATOM 324 CD GLU 19 -7.496 5.874 1.163 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.568 7.008 0.751 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.440 5.122 1.197 1.00 0.45 O ATOM 333 N VAL 20 -3.053 3.621 2.008 1.00 0.38 N ATOM 334 CA VAL 20 -2.582 2.383 1.398 1.00 0.38 C ATOM 335 C VAL 20 -3.678 1.325 1.381 1.00 0.38 C ATOM 336 O VAL 20 -4.126 0.863 2.430 1.00 0.38 O ATOM 337 CB VAL 20 -1.361 1.841 2.166 1.00 0.38 C ATOM 338 CG1 VAL 20 -0.875 0.541 1.542 1.00 0.38 C ATOM 339 CG2 VAL 20 -0.253 2.882 2.176 1.00 0.38 C ATOM 349 N ARG 21 -4.107 0.945 0.182 1.00 0.45 N ATOM 350 CA ARG 21 -5.202 -0.006 0.026 1.00 0.45 C ATOM 351 C ARG 21 -4.900 -1.019 -1.071 1.00 0.45 C ATOM 352 O ARG 21 -4.611 -0.648 -2.209 1.00 0.45 O ATOM 353 CB ARG 21 -6.498 0.722 -0.302 1.00 0.45 C ATOM 354 CG ARG 21 -7.001 1.653 0.788 1.00 0.45 C ATOM 355 CD ARG 21 -7.488 0.901 1.974 1.00 0.45 C ATOM 356 NE ARG 21 -8.045 1.784 2.985 1.00 0.45 N ATOM 357 CZ ARG 21 -7.325 2.395 3.947 1.00 0.45 C ATOM 358 NH1 ARG 21 -6.026 2.209 4.014 1.00 0.45 N ATOM 359 NH2 ARG 21 -7.926 3.181 4.823 1.00 0.45 N ATOM 373 N CYS 22 -4.967 -2.299 -0.721 1.00 0.75 N ATOM 374 CA CYS 22 -4.798 -3.369 -1.697 1.00 0.75 C ATOM 375 C CYS 22 -6.059 -3.558 -2.531 1.00 0.75 C ATOM 376 O CYS 22 -7.147 -3.147 -2.131 1.00 0.75 O ATOM 377 CB CYS 22 -4.455 -4.685 -0.997 1.00 0.75 C ATOM 378 SG CYS 22 -5.800 -5.359 0.008 1.00 0.75 S ATOM 384 N ASP 23 -5.904 -4.181 -3.695 1.00 0.73 N ATOM 385 CA ASP 23 -7.029 -4.422 -4.590 1.00 0.73 C ATOM 386 C ASP 23 -7.802 -5.669 -4.181 1.00 0.73 C ATOM 387 O ASP 23 -7.460 -6.329 -3.200 1.00 0.73 O ATOM 388 CB ASP 23 -6.544 -4.566 -6.034 1.00 0.73 C ATOM 389 CG ASP 23 -5.718 -5.826 -6.260 1.00 0.73 C ATOM 390 OD1 ASP 23 -5.953 -6.795 -5.578 1.00 0.73 O ATOM 391 OD2 ASP 23 -4.862 -5.806 -7.111 1.00 0.73 O ATOM 396 N GLU 24 -8.844 -5.988 -4.940 1.00 1.11 N ATOM 397 CA GLU 24 -9.782 -7.036 -4.553 1.00 1.11 C ATOM 398 C GLU 24 -9.095 -8.395 -4.496 1.00 1.11 C ATOM 399 O GLU 24 -9.454 -9.249 -3.686 1.00 1.11 O ATOM 400 CB GLU 24 -10.958 -7.088 -5.530 1.00 1.11 C ATOM 401 CG GLU 24 -11.887 -5.885 -5.461 1.00 1.11 C ATOM 402 CD GLU 24 -12.999 -5.946 -6.470 1.00 1.11 C ATOM 403 OE1 GLU 24 -12.968 -6.814 -7.310 1.00 1.11 O ATOM 404 OE2 GLU 24 -13.882 -5.124 -6.402 1.00 1.11 O ATOM 411 N SER 25 -8.106 -8.589 -5.362 1.00 0.67 N ATOM 412 CA SER 25 -7.394 -9.859 -5.440 1.00 0.67 C ATOM 413 C SER 25 -6.197 -9.880 -4.498 1.00 0.67 C ATOM 414 O SER 25 -5.509 -10.893 -4.376 1.00 0.67 O ATOM 415 CB SER 25 -6.934 -10.112 -6.863 1.00 0.67 C ATOM 416 OG SER 25 -5.981 -9.164 -7.258 1.00 0.67 O ATOM 422 N ASN 26 -5.954 -8.755 -3.833 1.00 0.30 N ATOM 423 CA ASN 26 -4.799 -8.619 -2.955 1.00 0.30 C ATOM 424 C ASN 26 -3.497 -8.718 -3.738 1.00 0.30 C ATOM 425 O ASN 26 -2.449 -9.044 -3.181 1.00 0.30 O ATOM 426 CB ASN 26 -4.840 -9.662 -1.853 1.00 0.30 C ATOM 427 CG ASN 26 -6.069 -9.547 -0.994 1.00 0.30 C ATOM 428 OD1 ASN 26 -6.437 -8.450 -0.560 1.00 0.30 O ATOM 429 ND2 ASN 26 -6.710 -10.659 -0.741 1.00 0.30 N ATOM 436 N HIS 27 -3.569 -8.434 -5.034 1.00 0.61 N ATOM 437 CA HIS 27 -2.404 -8.529 -5.906 1.00 0.61 C ATOM 438 C HIS 27 -1.577 -7.250 -5.863 1.00 0.61 C ATOM 439 O HIS 27 -0.418 -7.262 -5.450 1.00 0.61 O ATOM 440 CB HIS 27 -2.829 -8.821 -7.348 1.00 0.61 C ATOM 441 CG HIS 27 -1.679 -9.014 -8.288 1.00 0.61 C ATOM 442 ND1 HIS 27 -0.782 -10.054 -8.160 1.00 0.61 N ATOM 443 CD2 HIS 27 -1.279 -8.300 -9.366 1.00 0.61 C ATOM 444 CE1 HIS 27 0.121 -9.971 -9.123 1.00 0.61 C ATOM 445 NE2 HIS 27 -0.159 -8.917 -9.867 1.00 0.61 N ATOM 453 N CYS 28 -2.181 -6.147 -6.292 1.00 0.42 N ATOM 454 CA CYS 28 -1.504 -4.857 -6.301 1.00 0.42 C ATOM 455 C CYS 28 -1.950 -3.991 -5.130 1.00 0.42 C ATOM 456 O CYS 28 -3.041 -4.176 -4.590 1.00 0.42 O ATOM 457 CB CYS 28 -1.775 -4.115 -7.610 1.00 0.42 C ATOM 458 SG CYS 28 -1.075 -4.916 -9.072 1.00 0.42 S ATOM 464 N VAL 29 -1.102 -3.045 -4.741 1.00 0.29 N ATOM 465 CA VAL 29 -1.434 -2.109 -3.674 1.00 0.29 C ATOM 466 C VAL 29 -1.466 -0.676 -4.188 1.00 0.29 C ATOM 467 O VAL 29 -0.492 -0.192 -4.766 1.00 0.29 O ATOM 468 CB VAL 29 -0.409 -2.220 -2.530 1.00 0.29 C ATOM 469 CG1 VAL 29 -0.730 -1.218 -1.430 1.00 0.29 C ATOM 470 CG2 VAL 29 -0.396 -3.638 -1.981 1.00 0.29 C ATOM 480 N GLU 30 -2.590 -0.001 -3.975 1.00 0.26 N ATOM 481 CA GLU 30 -2.745 1.383 -4.407 1.00 0.26 C ATOM 482 C GLU 30 -2.425 2.352 -3.277 1.00 0.26 C ATOM 483 O GLU 30 -3.007 2.274 -2.194 1.00 0.26 O ATOM 484 CB GLU 30 -4.169 1.627 -4.912 1.00 0.26 C ATOM 485 CG GLU 30 -4.429 3.044 -5.404 1.00 0.26 C ATOM 486 CD GLU 30 -5.837 3.247 -5.889 1.00 0.26 C ATOM 487 OE1 GLU 30 -6.573 2.291 -5.935 1.00 0.26 O ATOM 488 OE2 GLU 30 -6.178 4.360 -6.212 1.00 0.26 O ATOM 495 N VAL 31 -1.496 3.267 -3.534 1.00 0.32 N ATOM 496 CA VAL 31 -1.138 4.291 -2.560 1.00 0.32 C ATOM 497 C VAL 31 -1.565 5.674 -3.032 1.00 0.32 C ATOM 498 O VAL 31 -1.158 6.129 -4.102 1.00 0.32 O ATOM 499 CB VAL 31 0.381 4.284 -2.310 1.00 0.32 C ATOM 500 CG1 VAL 31 0.760 5.356 -1.299 1.00 0.32 C ATOM 501 CG2 VAL 31 0.820 2.909 -1.828 1.00 0.32 C ATOM 511 N ARG 32 -2.389 6.341 -2.229 1.00 0.30 N ATOM 512 CA ARG 32 -2.859 7.682 -2.556 1.00 0.30 C ATOM 513 C ARG 32 -2.078 8.741 -1.786 1.00 0.30 C ATOM 514 O ARG 32 -2.139 8.800 -0.559 1.00 0.30 O ATOM 515 CB ARG 32 -4.340 7.821 -2.243 1.00 0.30 C ATOM 516 CG ARG 32 -4.940 9.178 -2.578 1.00 0.30 C ATOM 517 CD ARG 32 -6.411 9.194 -2.368 1.00 0.30 C ATOM 518 NE ARG 32 -6.761 9.011 -0.969 1.00 0.30 N ATOM 519 CZ ARG 32 -6.845 10.006 -0.064 1.00 0.30 C ATOM 520 NH1 ARG 32 -6.603 11.246 -0.427 1.00 0.30 N ATOM 521 NH2 ARG 32 -7.172 9.735 1.187 1.00 0.30 N ATOM 535 N CYS 33 -1.346 9.575 -2.516 1.00 0.67 N ATOM 536 CA CYS 33 -0.577 10.654 -1.906 1.00 0.67 C ATOM 537 C CYS 33 -1.254 12.002 -2.123 1.00 0.67 C ATOM 538 O CYS 33 -2.234 12.105 -2.859 1.00 0.67 O ATOM 539 CB CYS 33 0.837 10.700 -2.484 1.00 0.67 C ATOM 540 SG CYS 33 1.779 9.173 -2.255 1.00 0.67 S ATOM 546 N SER 34 -0.723 13.034 -1.475 1.00 1.30 N ATOM 547 CA SER 34 -1.260 14.382 -1.613 1.00 1.30 C ATOM 548 C SER 34 -1.009 14.935 -3.010 1.00 1.30 C ATOM 549 O SER 34 -1.715 15.833 -3.469 1.00 1.30 O ATOM 550 CB SER 34 -0.640 15.300 -0.578 1.00 1.30 C ATOM 551 OG SER 34 0.725 15.493 -0.831 1.00 1.30 O ATOM 557 N ASP 35 0.001 14.393 -3.683 1.00 2.34 N ATOM 558 CA ASP 35 0.368 14.854 -5.015 1.00 2.34 C ATOM 559 C ASP 35 -0.169 13.917 -6.090 1.00 2.34 C ATOM 560 O ASP 35 -0.889 14.343 -6.994 1.00 2.34 O ATOM 561 CB ASP 35 1.889 14.967 -5.144 1.00 2.34 C ATOM 562 CG ASP 35 2.480 16.050 -4.251 1.00 2.34 C ATOM 563 OD1 ASP 35 1.733 16.868 -3.767 1.00 2.34 O ATOM 564 OD2 ASP 35 3.673 16.050 -4.061 1.00 2.34 O ATOM 569 N THR 36 0.184 12.641 -5.986 1.00 0.51 N ATOM 570 CA THR 36 -0.195 11.656 -6.993 1.00 0.51 C ATOM 571 C THR 36 -0.498 10.306 -6.356 1.00 0.51 C ATOM 572 O THR 36 -0.771 10.221 -5.158 1.00 0.51 O ATOM 573 CB THR 36 0.911 11.492 -8.052 1.00 0.51 C ATOM 574 OG1 THR 36 0.438 10.655 -9.115 1.00 0.51 O ATOM 575 CG2 THR 36 2.152 10.867 -7.433 1.00 0.51 C ATOM 583 N LYS 37 -0.451 9.253 -7.164 1.00 0.39 N ATOM 584 CA LYS 37 -0.662 7.899 -6.669 1.00 0.39 C ATOM 585 C LYS 37 0.529 7.004 -6.988 1.00 0.39 C ATOM 586 O LYS 37 1.361 7.338 -7.829 1.00 0.39 O ATOM 587 CB LYS 37 -1.941 7.304 -7.263 1.00 0.39 C ATOM 588 CG LYS 37 -3.226 7.955 -6.771 1.00 0.39 C ATOM 589 CD LYS 37 -4.451 7.195 -7.253 1.00 0.39 C ATOM 590 CE LYS 37 -5.730 7.778 -6.671 1.00 0.39 C ATOM 591 NZ LYS 37 -6.930 6.989 -7.061 1.00 0.39 N ATOM 605 N TYR 38 0.603 5.863 -6.310 1.00 0.26 N ATOM 606 CA TYR 38 1.642 4.877 -6.580 1.00 0.26 C ATOM 607 C TYR 38 1.081 3.462 -6.551 1.00 0.26 C ATOM 608 O TYR 38 0.335 3.098 -5.641 1.00 0.26 O ATOM 609 CB TYR 38 2.787 5.015 -5.573 1.00 0.26 C ATOM 610 CG TYR 38 3.873 3.976 -5.738 1.00 0.26 C ATOM 611 CD1 TYR 38 4.852 4.143 -6.706 1.00 0.26 C ATOM 612 CD2 TYR 38 3.892 2.856 -4.919 1.00 0.26 C ATOM 613 CE1 TYR 38 5.845 3.194 -6.857 1.00 0.26 C ATOM 614 CE2 TYR 38 4.884 1.908 -5.069 1.00 0.26 C ATOM 615 CZ TYR 38 5.858 2.073 -6.034 1.00 0.26 C ATOM 616 OH TYR 38 6.846 1.129 -6.183 1.00 0.26 O ATOM 626 N THR 39 1.444 2.666 -7.550 1.00 0.37 N ATOM 627 CA THR 39 0.976 1.287 -7.641 1.00 0.37 C ATOM 628 C THR 39 2.108 0.302 -7.376 1.00 0.37 C ATOM 629 O THR 39 3.136 0.329 -8.051 1.00 0.37 O ATOM 630 CB THR 39 0.354 1.003 -9.021 1.00 0.37 C ATOM 631 OG1 THR 39 -0.771 1.866 -9.228 1.00 0.37 O ATOM 632 CG2 THR 39 -0.100 -0.446 -9.113 1.00 0.37 C ATOM 640 N LEU 40 1.910 -0.567 -6.391 1.00 0.31 N ATOM 641 CA LEU 40 2.877 -1.615 -6.089 1.00 0.31 C ATOM 642 C LEU 40 2.393 -2.971 -6.586 1.00 0.31 C ATOM 643 O LEU 40 1.286 -3.403 -6.259 1.00 0.31 O ATOM 644 CB LEU 40 3.136 -1.679 -4.579 1.00 0.31 C ATOM 645 CG LEU 40 4.093 -2.783 -4.113 1.00 0.31 C ATOM 646 CD1 LEU 40 5.495 -2.496 -4.636 1.00 0.31 C ATOM 647 CD2 LEU 40 4.081 -2.860 -2.594 1.00 0.31 C ATOM 659 N CYS 41 3.226 -3.640 -7.374 1.00 0.44 N ATOM 660 CA CYS 41 2.884 -4.949 -7.917 1.00 0.44 C ATOM 661 C CYS 41 3.541 -6.066 -7.117 1.00 0.44 C ATOM 662 O CYS 41 3.057 -6.425 -6.078 1.00 0.44 O ATOM 663 OXT CYS 41 4.541 -6.588 -7.525 1.00 0.44 O ATOM 664 CB CYS 41 3.317 -5.055 -9.380 1.00 0.44 C ATOM 665 SG CYS 41 2.940 -6.648 -10.148 1.00 0.44 S TER END