####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS043_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.52 1.52 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 1 - 21 0.99 1.94 LONGEST_CONTINUOUS_SEGMENT: 21 2 - 22 0.87 1.81 LCS_AVERAGE: 42.77 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 21 41 41 3 3 5 31 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 21 41 41 7 22 32 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 21 41 41 7 22 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 21 41 41 11 25 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 21 41 41 11 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 21 41 41 11 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 21 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 21 41 41 14 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 21 41 41 9 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 21 41 41 8 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 21 41 41 14 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 21 41 41 8 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 21 41 41 8 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 21 41 41 6 18 33 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 20 41 41 6 15 25 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 41 41 3 3 8 16 24 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 4 41 41 3 4 7 8 9 30 37 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 15 41 41 6 22 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 15 41 41 14 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 15 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 15 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 15 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 15 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 15 41 41 10 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 3 22 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 3 16 28 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 12 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 6 19 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 8 24 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 9 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 8 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 80.92 ( 42.77 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 28 34 36 39 39 40 40 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 36.59 68.29 82.93 87.80 95.12 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.64 0.87 0.96 1.20 1.20 1.35 1.35 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 GDT RMS_ALL_AT 1.68 1.66 1.59 1.58 1.53 1.53 1.53 1.53 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 1.52 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.849 0 0.134 0.776 5.303 17.727 12.727 5.221 LGA Q 2 Q 2 2.226 0 0.191 0.946 3.224 47.727 38.990 2.232 LGA E 3 E 3 1.503 0 0.023 1.420 7.154 58.182 32.121 7.112 LGA T 4 T 4 1.375 0 0.023 1.100 3.449 65.455 56.623 3.449 LGA R 5 R 5 1.258 0 0.020 0.229 3.208 65.455 45.620 3.208 LGA K 6 K 6 0.995 0 0.015 1.281 5.788 77.727 48.687 5.555 LGA K 7 K 7 0.588 0 0.048 0.660 2.587 81.818 62.020 2.539 LGA C 8 C 8 0.629 0 0.016 0.019 0.706 81.818 81.818 0.706 LGA T 9 T 9 0.805 0 0.022 0.104 1.344 81.818 79.481 0.979 LGA E 10 E 10 0.881 0 0.051 0.974 3.681 77.727 56.364 3.681 LGA M 11 M 11 0.662 0 0.023 0.866 3.839 81.818 72.955 3.839 LGA K 12 K 12 0.618 0 0.025 0.653 1.960 81.818 76.970 1.755 LGA K 13 K 13 1.216 0 0.023 0.591 2.949 69.545 63.030 2.949 LGA K 14 K 14 1.413 0 0.029 0.622 4.762 65.455 49.091 4.762 LGA F 15 F 15 0.543 0 0.095 0.248 2.840 90.909 62.975 2.735 LGA K 16 K 16 0.599 0 0.041 1.248 5.603 90.909 55.354 5.260 LGA N 17 N 17 0.854 0 0.207 0.468 2.338 86.364 72.500 2.338 LGA C 18 C 18 1.216 0 0.043 0.057 1.410 65.455 65.455 1.410 LGA E 19 E 19 0.999 0 0.148 0.395 2.302 82.273 68.283 1.443 LGA V 20 V 20 1.054 0 0.027 0.043 1.295 65.455 67.792 0.964 LGA R 21 R 21 0.947 0 0.052 1.139 5.082 81.818 45.289 5.044 LGA C 22 C 22 1.692 0 0.094 0.894 5.038 54.545 44.848 5.038 LGA D 23 D 23 2.291 0 0.140 0.960 4.512 32.727 26.591 3.774 LGA E 24 E 24 3.967 0 0.056 0.638 8.158 21.364 10.101 6.204 LGA S 25 S 25 0.965 0 0.242 0.747 4.421 52.273 40.303 4.421 LGA N 26 N 26 4.854 0 0.247 1.172 9.694 10.909 5.455 6.751 LGA H 27 H 27 1.360 0 0.401 1.196 8.500 77.727 32.909 8.500 LGA C 28 C 28 0.552 0 0.188 0.766 2.433 86.364 74.848 2.433 LGA V 29 V 29 0.192 0 0.055 0.075 0.479 100.000 100.000 0.226 LGA E 30 E 30 0.404 0 0.106 0.653 2.313 90.909 79.192 1.137 LGA V 31 V 31 0.541 0 0.076 0.103 0.784 86.364 84.416 0.784 LGA R 32 R 32 0.685 0 0.114 1.010 7.074 86.364 51.736 7.074 LGA C 33 C 33 0.786 0 0.463 0.532 2.887 64.091 70.000 0.804 LGA S 34 S 34 1.173 0 0.224 0.735 2.649 56.364 54.848 2.255 LGA D 35 D 35 1.955 0 0.121 1.019 3.366 58.636 47.955 3.366 LGA T 36 T 36 1.490 0 0.260 1.115 4.775 82.273 58.442 4.775 LGA K 37 K 37 0.363 0 0.128 1.526 4.942 78.636 58.384 4.942 LGA Y 38 Y 38 1.426 0 0.031 1.325 4.888 82.273 50.606 4.888 LGA T 39 T 39 1.026 0 0.083 0.096 2.182 58.636 53.506 1.650 LGA L 40 L 40 0.602 0 0.061 0.994 4.065 95.455 65.455 4.065 LGA C 41 C 41 1.103 0 0.107 0.809 3.017 61.818 61.299 3.017 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.522 1.490 2.619 69.634 55.733 28.426 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.35 88.415 94.480 2.760 LGA_LOCAL RMSD: 1.350 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.533 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.522 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.978019 * X + 0.086838 * Y + 0.189575 * Z + -3.375078 Y_new = 0.113228 * X + 0.542271 * Y + -0.832539 * Z + -13.469829 Z_new = -0.175098 * X + 0.835704 * Y + 0.520519 * Z + 0.898836 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.115259 0.176005 1.013744 [DEG: 6.6039 10.0843 58.0833 ] ZXZ: 0.223890 1.023338 -0.206534 [DEG: 12.8279 58.6329 -11.8335 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS043_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.35 94.480 1.52 REMARK ---------------------------------------------------------- MOLECULE T0955TS043_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 1 N SER 1 -3.375 -13.470 0.899 1.00 0.90 N ATOM 2 CA SER 1 -1.949 -13.305 0.644 1.00 0.90 C ATOM 3 C SER 1 -1.287 -12.472 1.734 1.00 0.90 C ATOM 4 O SER 1 -1.440 -11.252 1.775 1.00 0.90 O ATOM 5 CB SER 1 -1.733 -12.650 -0.706 1.00 0.90 C ATOM 6 OG SER 1 -0.376 -12.374 -0.920 1.00 0.90 O ATOM 14 N GLN 2 -0.551 -13.140 2.616 1.00 0.65 N ATOM 15 CA GLN 2 0.186 -12.457 3.672 1.00 0.65 C ATOM 16 C GLN 2 1.316 -11.611 3.098 1.00 0.65 C ATOM 17 O GLN 2 1.675 -10.575 3.657 1.00 0.65 O ATOM 18 CB GLN 2 0.748 -13.468 4.674 1.00 0.65 C ATOM 19 CG GLN 2 1.399 -12.839 5.895 1.00 0.65 C ATOM 20 CD GLN 2 0.420 -12.023 6.716 1.00 0.65 C ATOM 21 OE1 GLN 2 -0.729 -12.425 6.917 1.00 0.65 O ATOM 22 NE2 GLN 2 0.870 -10.869 7.197 1.00 0.65 N ATOM 31 N GLU 3 1.872 -12.059 1.977 1.00 0.47 N ATOM 32 CA GLU 3 2.957 -11.340 1.319 1.00 0.47 C ATOM 33 C GLU 3 2.474 -10.011 0.753 1.00 0.47 C ATOM 34 O GLU 3 3.209 -9.023 0.750 1.00 0.47 O ATOM 35 CB GLU 3 3.561 -12.192 0.201 1.00 0.47 C ATOM 36 CG GLU 3 4.306 -13.428 0.685 1.00 0.47 C ATOM 37 CD GLU 3 5.461 -13.099 1.589 1.00 0.47 C ATOM 38 OE1 GLU 3 6.247 -12.254 1.232 1.00 0.47 O ATOM 39 OE2 GLU 3 5.559 -13.693 2.637 1.00 0.47 O ATOM 46 N THR 4 1.234 -9.992 0.275 1.00 0.55 N ATOM 47 CA THR 4 0.593 -8.752 -0.141 1.00 0.55 C ATOM 48 C THR 4 0.390 -7.812 1.041 1.00 0.55 C ATOM 49 O THR 4 0.597 -6.604 0.930 1.00 0.55 O ATOM 50 CB THR 4 -0.762 -9.029 -0.819 1.00 0.55 C ATOM 51 OG1 THR 4 -0.557 -9.825 -1.994 1.00 0.55 O ATOM 52 CG2 THR 4 -1.441 -7.724 -1.208 1.00 0.55 C ATOM 60 N ARG 5 -0.017 -8.375 2.175 1.00 0.50 N ATOM 61 CA ARG 5 -0.164 -7.603 3.403 1.00 0.50 C ATOM 62 C ARG 5 1.164 -6.991 3.831 1.00 0.50 C ATOM 63 O ARG 5 1.210 -5.856 4.304 1.00 0.50 O ATOM 64 CB ARG 5 -0.699 -8.481 4.525 1.00 0.50 C ATOM 65 CG ARG 5 -2.152 -8.905 4.368 1.00 0.50 C ATOM 66 CD ARG 5 -2.565 -9.854 5.432 1.00 0.50 C ATOM 67 NE ARG 5 -3.966 -10.222 5.316 1.00 0.50 N ATOM 68 CZ ARG 5 -4.533 -11.282 5.926 1.00 0.50 C ATOM 69 NH1 ARG 5 -3.805 -12.066 6.690 1.00 0.50 N ATOM 70 NH2 ARG 5 -5.820 -11.532 5.757 1.00 0.50 N ATOM 84 N LYS 6 2.241 -7.750 3.664 1.00 0.25 N ATOM 85 CA LYS 6 3.583 -7.244 3.927 1.00 0.25 C ATOM 86 C LYS 6 3.915 -6.064 3.023 1.00 0.25 C ATOM 87 O LYS 6 4.435 -5.046 3.480 1.00 0.25 O ATOM 88 CB LYS 6 4.619 -8.354 3.744 1.00 0.25 C ATOM 89 CG LYS 6 4.572 -9.441 4.809 1.00 0.25 C ATOM 90 CD LYS 6 5.573 -10.548 4.515 1.00 0.25 C ATOM 91 CE LYS 6 5.456 -11.684 5.519 1.00 0.25 C ATOM 92 NZ LYS 6 6.377 -12.808 5.199 1.00 0.25 N ATOM 106 N LYS 7 3.609 -6.206 1.738 1.00 0.24 N ATOM 107 CA LYS 7 3.842 -5.137 0.773 1.00 0.24 C ATOM 108 C LYS 7 3.062 -3.882 1.142 1.00 0.24 C ATOM 109 O LYS 7 3.585 -2.770 1.063 1.00 0.24 O ATOM 110 CB LYS 7 3.462 -5.596 -0.637 1.00 0.24 C ATOM 111 CG LYS 7 4.419 -6.613 -1.246 1.00 0.24 C ATOM 112 CD LYS 7 3.956 -7.048 -2.627 1.00 0.24 C ATOM 113 CE LYS 7 4.874 -8.113 -3.211 1.00 0.24 C ATOM 114 NZ LYS 7 4.404 -8.586 -4.541 1.00 0.24 N ATOM 128 N CYS 8 1.809 -4.066 1.544 1.00 0.29 N ATOM 129 CA CYS 8 0.971 -2.953 1.972 1.00 0.29 C ATOM 130 C CYS 8 1.594 -2.214 3.150 1.00 0.29 C ATOM 131 O CYS 8 1.670 -0.986 3.154 1.00 0.29 O ATOM 132 CB CYS 8 -0.421 -3.449 2.368 1.00 0.29 C ATOM 133 SG CYS 8 -1.567 -2.132 2.840 1.00 0.29 S ATOM 139 N THR 9 2.040 -2.970 4.147 1.00 0.31 N ATOM 140 CA THR 9 2.664 -2.389 5.330 1.00 0.31 C ATOM 141 C THR 9 3.899 -1.579 4.959 1.00 0.31 C ATOM 142 O THR 9 4.133 -0.499 5.504 1.00 0.31 O ATOM 143 CB THR 9 3.046 -3.479 6.348 1.00 0.31 C ATOM 144 OG1 THR 9 1.866 -4.173 6.774 1.00 0.31 O ATOM 145 CG2 THR 9 3.731 -2.862 7.558 1.00 0.31 C ATOM 153 N GLU 10 4.689 -2.106 4.029 1.00 0.24 N ATOM 154 CA GLU 10 5.923 -1.451 3.612 1.00 0.24 C ATOM 155 C GLU 10 5.634 -0.148 2.878 1.00 0.24 C ATOM 156 O GLU 10 6.391 0.817 2.984 1.00 0.24 O ATOM 157 CB GLU 10 6.743 -2.382 2.715 1.00 0.24 C ATOM 158 CG GLU 10 7.362 -3.569 3.440 1.00 0.24 C ATOM 159 CD GLU 10 8.316 -3.159 4.526 1.00 0.24 C ATOM 160 OE1 GLU 10 9.163 -2.337 4.268 1.00 0.24 O ATOM 161 OE2 GLU 10 8.197 -3.667 5.616 1.00 0.24 O ATOM 168 N MET 11 4.534 -0.125 2.133 1.00 0.25 N ATOM 169 CA MET 11 4.091 1.088 1.457 1.00 0.25 C ATOM 170 C MET 11 3.598 2.127 2.455 1.00 0.25 C ATOM 171 O MET 11 3.742 3.331 2.237 1.00 0.25 O ATOM 172 CB MET 11 2.995 0.759 0.445 1.00 0.25 C ATOM 173 CG MET 11 3.468 -0.051 -0.753 1.00 0.25 C ATOM 174 SD MET 11 4.849 0.723 -1.617 1.00 0.25 S ATOM 175 CE MET 11 4.022 2.098 -2.412 1.00 0.25 C ATOM 185 N LYS 12 3.015 1.656 3.553 1.00 0.30 N ATOM 186 CA LYS 12 2.630 2.532 4.653 1.00 0.30 C ATOM 187 C LYS 12 3.852 3.148 5.320 1.00 0.30 C ATOM 188 O LYS 12 3.826 4.307 5.736 1.00 0.30 O ATOM 189 CB LYS 12 1.799 1.764 5.682 1.00 0.30 C ATOM 190 CG LYS 12 0.398 1.398 5.214 1.00 0.30 C ATOM 191 CD LYS 12 -0.358 0.622 6.283 1.00 0.30 C ATOM 192 CE LYS 12 -1.771 0.288 5.829 1.00 0.30 C ATOM 193 NZ LYS 12 -2.514 -0.492 6.857 1.00 0.30 N ATOM 207 N LYS 13 4.923 2.368 5.419 1.00 0.35 N ATOM 208 CA LYS 13 6.190 2.869 5.937 1.00 0.35 C ATOM 209 C LYS 13 6.757 3.964 5.042 1.00 0.35 C ATOM 210 O LYS 13 7.255 4.980 5.527 1.00 0.35 O ATOM 211 CB LYS 13 7.200 1.728 6.077 1.00 0.35 C ATOM 212 CG LYS 13 6.873 0.729 7.178 1.00 0.35 C ATOM 213 CD LYS 13 7.884 -0.406 7.213 1.00 0.35 C ATOM 214 CE LYS 13 7.519 -1.441 8.266 1.00 0.35 C ATOM 215 NZ LYS 13 8.451 -2.602 8.253 1.00 0.35 N ATOM 229 N LYS 14 6.679 3.750 3.733 1.00 0.48 N ATOM 230 CA LYS 14 7.187 4.718 2.767 1.00 0.48 C ATOM 231 C LYS 14 6.321 5.971 2.735 1.00 0.48 C ATOM 232 O LYS 14 6.831 7.086 2.621 1.00 0.48 O ATOM 233 CB LYS 14 7.261 4.094 1.373 1.00 0.48 C ATOM 234 CG LYS 14 8.336 3.028 1.217 1.00 0.48 C ATOM 235 CD LYS 14 8.328 2.434 -0.185 1.00 0.48 C ATOM 236 CE LYS 14 9.398 1.364 -0.340 1.00 0.48 C ATOM 237 NZ LYS 14 9.394 0.768 -1.703 1.00 0.48 N ATOM 251 N PHE 15 5.011 5.782 2.839 1.00 0.58 N ATOM 252 CA PHE 15 4.067 6.888 2.741 1.00 0.58 C ATOM 253 C PHE 15 3.133 6.924 3.944 1.00 0.58 C ATOM 254 O PHE 15 1.948 6.611 3.831 1.00 0.58 O ATOM 255 CB PHE 15 3.245 6.777 1.454 1.00 0.58 C ATOM 256 CG PHE 15 4.078 6.746 0.204 1.00 0.58 C ATOM 257 CD1 PHE 15 4.405 5.541 -0.399 1.00 0.58 C ATOM 258 CD2 PHE 15 4.537 7.922 -0.370 1.00 0.58 C ATOM 259 CE1 PHE 15 5.171 5.511 -1.550 1.00 0.58 C ATOM 260 CE2 PHE 15 5.302 7.896 -1.520 1.00 0.58 C ATOM 261 CZ PHE 15 5.619 6.689 -2.110 1.00 0.58 C ATOM 271 N LYS 16 3.675 7.309 5.094 1.00 0.87 N ATOM 272 CA LYS 16 2.930 7.255 6.347 1.00 0.87 C ATOM 273 C LYS 16 1.807 8.284 6.364 1.00 0.87 C ATOM 274 O LYS 16 0.805 8.112 7.059 1.00 0.87 O ATOM 275 CB LYS 16 3.865 7.478 7.536 1.00 0.87 C ATOM 276 CG LYS 16 4.842 6.338 7.790 1.00 0.87 C ATOM 277 CD LYS 16 5.753 6.643 8.970 1.00 0.87 C ATOM 278 CE LYS 16 6.734 5.507 9.222 1.00 0.87 C ATOM 279 NZ LYS 16 7.657 5.807 10.350 1.00 0.87 N ATOM 293 N ASN 17 1.980 9.354 5.596 1.00 0.81 N ATOM 294 CA ASN 17 1.020 10.453 5.585 1.00 0.81 C ATOM 295 C ASN 17 0.065 10.338 4.405 1.00 0.81 C ATOM 296 O ASN 17 -0.654 11.284 4.082 1.00 0.81 O ATOM 297 CB ASN 17 1.740 11.789 5.562 1.00 0.81 C ATOM 298 CG ASN 17 2.481 12.068 6.840 1.00 0.81 C ATOM 299 OD1 ASN 17 1.987 11.775 7.935 1.00 0.81 O ATOM 300 ND2 ASN 17 3.656 12.633 6.723 1.00 0.81 N ATOM 307 N CYS 18 0.059 9.174 3.764 1.00 0.51 N ATOM 308 CA CYS 18 -0.789 8.942 2.602 1.00 0.51 C ATOM 309 C CYS 18 -1.744 7.780 2.839 1.00 0.51 C ATOM 310 O CYS 18 -1.586 7.019 3.793 1.00 0.51 O ATOM 311 CB CYS 18 0.062 8.653 1.364 1.00 0.51 C ATOM 312 SG CYS 18 1.240 9.962 0.955 1.00 0.51 S ATOM 318 N GLU 19 -2.735 7.648 1.965 1.00 0.45 N ATOM 319 CA GLU 19 -3.737 6.595 2.095 1.00 0.45 C ATOM 320 C GLU 19 -3.322 5.343 1.334 1.00 0.45 C ATOM 321 O GLU 19 -3.194 5.364 0.110 1.00 0.45 O ATOM 322 CB GLU 19 -5.095 7.086 1.588 1.00 0.45 C ATOM 323 CG GLU 19 -6.220 6.070 1.721 1.00 0.45 C ATOM 324 CD GLU 19 -7.544 6.596 1.240 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.615 7.754 0.906 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.485 5.838 1.206 1.00 0.45 O ATOM 333 N VAL 20 -3.113 4.254 2.065 1.00 0.38 N ATOM 334 CA VAL 20 -2.644 3.008 1.469 1.00 0.38 C ATOM 335 C VAL 20 -3.744 1.956 1.455 1.00 0.38 C ATOM 336 O VAL 20 -4.251 1.559 2.505 1.00 0.38 O ATOM 337 CB VAL 20 -1.431 2.468 2.248 1.00 0.38 C ATOM 338 CG1 VAL 20 -0.928 1.176 1.621 1.00 0.38 C ATOM 339 CG2 VAL 20 -0.328 3.515 2.282 1.00 0.38 C ATOM 349 N ARG 21 -4.111 1.507 0.259 1.00 0.45 N ATOM 350 CA ARG 21 -5.198 0.548 0.102 1.00 0.45 C ATOM 351 C ARG 21 -4.686 -0.778 -0.447 1.00 0.45 C ATOM 352 O ARG 21 -3.812 -0.807 -1.312 1.00 0.45 O ATOM 353 CB ARG 21 -6.268 1.099 -0.829 1.00 0.45 C ATOM 354 CG ARG 21 -7.002 2.324 -0.305 1.00 0.45 C ATOM 355 CD ARG 21 -8.064 2.770 -1.243 1.00 0.45 C ATOM 356 NE ARG 21 -8.767 3.943 -0.748 1.00 0.45 N ATOM 357 CZ ARG 21 -9.830 4.509 -1.352 1.00 0.45 C ATOM 358 NH1 ARG 21 -10.300 4.000 -2.469 1.00 0.45 N ATOM 359 NH2 ARG 21 -10.400 5.576 -0.820 1.00 0.45 N ATOM 373 N CYS 22 -5.238 -1.875 0.063 1.00 0.75 N ATOM 374 CA CYS 22 -4.925 -3.201 -0.456 1.00 0.75 C ATOM 375 C CYS 22 -6.034 -3.714 -1.364 1.00 0.75 C ATOM 376 O CYS 22 -7.205 -3.729 -0.983 1.00 0.75 O ATOM 377 CB CYS 22 -4.713 -4.190 0.690 1.00 0.75 C ATOM 378 SG CYS 22 -4.315 -5.871 0.152 1.00 0.75 S ATOM 384 N ASP 23 -5.660 -4.135 -2.567 1.00 0.73 N ATOM 385 CA ASP 23 -6.628 -4.624 -3.544 1.00 0.73 C ATOM 386 C ASP 23 -7.424 -5.798 -2.990 1.00 0.73 C ATOM 387 O ASP 23 -6.890 -6.635 -2.263 1.00 0.73 O ATOM 388 CB ASP 23 -5.922 -5.041 -4.836 1.00 0.73 C ATOM 389 CG ASP 23 -6.892 -5.352 -5.967 1.00 0.73 C ATOM 390 OD1 ASP 23 -7.368 -6.462 -6.028 1.00 0.73 O ATOM 391 OD2 ASP 23 -7.148 -4.478 -6.760 1.00 0.73 O ATOM 396 N GLU 24 -8.706 -5.854 -3.339 1.00 1.11 N ATOM 397 CA GLU 24 -9.587 -6.907 -2.848 1.00 1.11 C ATOM 398 C GLU 24 -9.002 -8.286 -3.121 1.00 1.11 C ATOM 399 O GLU 24 -9.100 -9.189 -2.289 1.00 1.11 O ATOM 400 CB GLU 24 -10.968 -6.790 -3.496 1.00 1.11 C ATOM 401 CG GLU 24 -11.981 -7.814 -3.005 1.00 1.11 C ATOM 402 CD GLU 24 -13.341 -7.634 -3.622 1.00 1.11 C ATOM 403 OE1 GLU 24 -13.502 -6.730 -4.405 1.00 1.11 O ATOM 404 OE2 GLU 24 -14.219 -8.403 -3.309 1.00 1.11 O ATOM 411 N SER 25 -8.393 -8.445 -4.292 1.00 0.67 N ATOM 412 CA SER 25 -7.843 -9.731 -4.702 1.00 0.67 C ATOM 413 C SER 25 -6.406 -9.892 -4.224 1.00 0.67 C ATOM 414 O SER 25 -5.752 -10.894 -4.516 1.00 0.67 O ATOM 415 CB SER 25 -7.902 -9.867 -6.211 1.00 0.67 C ATOM 416 OG SER 25 -7.051 -8.943 -6.832 1.00 0.67 O ATOM 422 N ASN 26 -5.917 -8.900 -3.487 1.00 0.30 N ATOM 423 CA ASN 26 -4.547 -8.916 -2.991 1.00 0.30 C ATOM 424 C ASN 26 -3.545 -8.890 -4.138 1.00 0.30 C ATOM 425 O ASN 26 -2.437 -9.412 -4.020 1.00 0.30 O ATOM 426 CB ASN 26 -4.313 -10.127 -2.106 1.00 0.30 C ATOM 427 CG ASN 26 -5.221 -10.150 -0.908 1.00 0.30 C ATOM 428 OD1 ASN 26 -5.361 -9.146 -0.200 1.00 0.30 O ATOM 429 ND2 ASN 26 -5.841 -11.278 -0.667 1.00 0.30 N ATOM 436 N HIS 27 -3.942 -8.278 -5.249 1.00 0.61 N ATOM 437 CA HIS 27 -3.084 -8.195 -6.425 1.00 0.61 C ATOM 438 C HIS 27 -1.959 -7.190 -6.216 1.00 0.61 C ATOM 439 O HIS 27 -0.789 -7.498 -6.445 1.00 0.61 O ATOM 440 CB HIS 27 -3.900 -7.806 -7.664 1.00 0.61 C ATOM 441 CG HIS 27 -3.087 -7.720 -8.917 1.00 0.61 C ATOM 442 ND1 HIS 27 -2.571 -8.832 -9.547 1.00 0.61 N ATOM 443 CD2 HIS 27 -2.698 -6.654 -9.656 1.00 0.61 C ATOM 444 CE1 HIS 27 -1.901 -8.453 -10.622 1.00 0.61 C ATOM 445 NE2 HIS 27 -1.963 -7.137 -10.710 1.00 0.61 N ATOM 453 N CYS 28 -2.319 -5.987 -5.781 1.00 0.42 N ATOM 454 CA CYS 28 -1.361 -4.895 -5.668 1.00 0.42 C ATOM 455 C CYS 28 -1.773 -3.911 -4.581 1.00 0.42 C ATOM 456 O CYS 28 -2.853 -4.027 -4.001 1.00 0.42 O ATOM 457 CB CYS 28 -1.232 -4.153 -6.998 1.00 0.42 C ATOM 458 SG CYS 28 -2.738 -3.298 -7.516 1.00 0.42 S ATOM 464 N VAL 29 -0.907 -2.940 -4.309 1.00 0.29 N ATOM 465 CA VAL 29 -1.187 -1.925 -3.301 1.00 0.29 C ATOM 466 C VAL 29 -1.312 -0.543 -3.929 1.00 0.29 C ATOM 467 O VAL 29 -0.428 -0.104 -4.666 1.00 0.29 O ATOM 468 CB VAL 29 -0.069 -1.903 -2.240 1.00 0.29 C ATOM 469 CG1 VAL 29 -0.338 -0.822 -1.205 1.00 0.29 C ATOM 470 CG2 VAL 29 0.042 -3.268 -1.579 1.00 0.29 C ATOM 480 N GLU 30 -2.414 0.138 -3.635 1.00 0.26 N ATOM 481 CA GLU 30 -2.658 1.470 -4.174 1.00 0.26 C ATOM 482 C GLU 30 -2.456 2.542 -3.110 1.00 0.26 C ATOM 483 O GLU 30 -3.116 2.530 -2.071 1.00 0.26 O ATOM 484 CB GLU 30 -4.076 1.563 -4.743 1.00 0.26 C ATOM 485 CG GLU 30 -4.434 2.926 -5.321 1.00 0.26 C ATOM 486 CD GLU 30 -5.843 2.989 -5.840 1.00 0.26 C ATOM 487 OE1 GLU 30 -6.510 1.982 -5.819 1.00 0.26 O ATOM 488 OE2 GLU 30 -6.254 4.045 -6.258 1.00 0.26 O ATOM 495 N VAL 31 -1.540 3.467 -3.376 1.00 0.32 N ATOM 496 CA VAL 31 -1.257 4.554 -2.446 1.00 0.32 C ATOM 497 C VAL 31 -1.659 5.900 -3.034 1.00 0.32 C ATOM 498 O VAL 31 -1.207 6.276 -4.116 1.00 0.32 O ATOM 499 CB VAL 31 0.242 4.578 -2.093 1.00 0.32 C ATOM 500 CG1 VAL 31 0.544 5.718 -1.132 1.00 0.32 C ATOM 501 CG2 VAL 31 0.654 3.243 -1.493 1.00 0.32 C ATOM 511 N ARG 32 -2.512 6.623 -2.316 1.00 0.30 N ATOM 512 CA ARG 32 -2.981 7.927 -2.769 1.00 0.30 C ATOM 513 C ARG 32 -2.224 9.054 -2.079 1.00 0.30 C ATOM 514 O ARG 32 -2.325 9.232 -0.865 1.00 0.30 O ATOM 515 CB ARG 32 -4.471 8.082 -2.501 1.00 0.30 C ATOM 516 CG ARG 32 -5.069 9.403 -2.958 1.00 0.30 C ATOM 517 CD ARG 32 -6.529 9.465 -2.693 1.00 0.30 C ATOM 518 NE ARG 32 -6.823 9.459 -1.269 1.00 0.30 N ATOM 519 CZ ARG 32 -6.856 10.557 -0.490 1.00 0.30 C ATOM 520 NH1 ARG 32 -6.614 11.739 -1.010 1.00 0.30 N ATOM 521 NH2 ARG 32 -7.134 10.446 0.798 1.00 0.30 N ATOM 535 N CYS 33 -1.465 9.815 -2.860 1.00 0.67 N ATOM 536 CA CYS 33 -0.733 10.962 -2.336 1.00 0.67 C ATOM 537 C CYS 33 -1.316 12.270 -2.852 1.00 0.67 C ATOM 538 O CYS 33 -2.145 12.276 -3.763 1.00 0.67 O ATOM 539 CB CYS 33 0.744 10.880 -2.723 1.00 0.67 C ATOM 540 SG CYS 33 1.574 9.377 -2.156 1.00 0.67 S ATOM 546 N SER 34 -0.880 13.379 -2.265 1.00 1.30 N ATOM 547 CA SER 34 -1.355 14.698 -2.668 1.00 1.30 C ATOM 548 C SER 34 -0.885 15.047 -4.075 1.00 1.30 C ATOM 549 O SER 34 -1.498 15.866 -4.759 1.00 1.30 O ATOM 550 CB SER 34 -0.870 15.749 -1.688 1.00 1.30 C ATOM 551 OG SER 34 0.522 15.891 -1.753 1.00 1.30 O ATOM 557 N ASP 35 0.205 14.418 -4.501 1.00 2.34 N ATOM 558 CA ASP 35 0.770 14.674 -5.821 1.00 2.34 C ATOM 559 C ASP 35 0.246 13.677 -6.846 1.00 2.34 C ATOM 560 O ASP 35 -0.286 14.063 -7.887 1.00 2.34 O ATOM 561 CB ASP 35 2.298 14.609 -5.772 1.00 2.34 C ATOM 562 CG ASP 35 2.913 15.734 -4.951 1.00 2.34 C ATOM 563 OD1 ASP 35 2.221 16.683 -4.666 1.00 2.34 O ATOM 564 OD2 ASP 35 4.069 15.633 -4.614 1.00 2.34 O ATOM 569 N THR 36 0.399 12.391 -6.546 1.00 0.51 N ATOM 570 CA THR 36 0.006 11.336 -7.473 1.00 0.51 C ATOM 571 C THR 36 -0.312 10.043 -6.732 1.00 0.51 C ATOM 572 O THR 36 -0.434 10.032 -5.507 1.00 0.51 O ATOM 573 CB THR 36 1.108 11.077 -8.516 1.00 0.51 C ATOM 574 OG1 THR 36 0.610 10.192 -9.530 1.00 0.51 O ATOM 575 CG2 THR 36 2.329 10.453 -7.859 1.00 0.51 C ATOM 583 N LYS 37 -0.447 8.956 -7.483 1.00 0.39 N ATOM 584 CA LYS 37 -0.671 7.641 -6.893 1.00 0.39 C ATOM 585 C LYS 37 0.517 6.719 -7.133 1.00 0.39 C ATOM 586 O LYS 37 1.245 6.873 -8.113 1.00 0.39 O ATOM 587 CB LYS 37 -1.947 7.012 -7.456 1.00 0.39 C ATOM 588 CG LYS 37 -3.235 7.688 -7.005 1.00 0.39 C ATOM 589 CD LYS 37 -4.457 6.893 -7.437 1.00 0.39 C ATOM 590 CE LYS 37 -5.737 7.496 -6.878 1.00 0.39 C ATOM 591 NZ LYS 37 -6.933 6.679 -7.219 1.00 0.39 N ATOM 605 N TYR 38 0.709 5.763 -6.231 1.00 0.26 N ATOM 606 CA TYR 38 1.761 4.764 -6.385 1.00 0.26 C ATOM 607 C TYR 38 1.190 3.353 -6.353 1.00 0.26 C ATOM 608 O TYR 38 0.230 3.077 -5.634 1.00 0.26 O ATOM 609 CB TYR 38 2.820 4.932 -5.293 1.00 0.26 C ATOM 610 CG TYR 38 3.554 6.253 -5.353 1.00 0.26 C ATOM 611 CD1 TYR 38 3.021 7.373 -4.731 1.00 0.26 C ATOM 612 CD2 TYR 38 4.762 6.346 -6.029 1.00 0.26 C ATOM 613 CE1 TYR 38 3.691 8.579 -4.786 1.00 0.26 C ATOM 614 CE2 TYR 38 5.432 7.552 -6.085 1.00 0.26 C ATOM 615 CZ TYR 38 4.901 8.665 -5.466 1.00 0.26 C ATOM 616 OH TYR 38 5.569 9.867 -5.521 1.00 0.26 O ATOM 626 N THR 39 1.786 2.462 -7.138 1.00 0.37 N ATOM 627 CA THR 39 1.326 1.080 -7.217 1.00 0.37 C ATOM 628 C THR 39 2.469 0.104 -6.975 1.00 0.37 C ATOM 629 O THR 39 3.516 0.188 -7.617 1.00 0.37 O ATOM 630 CB THR 39 0.677 0.789 -8.583 1.00 0.37 C ATOM 631 OG1 THR 39 -0.444 1.660 -8.778 1.00 0.37 O ATOM 632 CG2 THR 39 0.209 -0.656 -8.654 1.00 0.37 C ATOM 640 N LEU 40 2.263 -0.822 -6.045 1.00 0.31 N ATOM 641 CA LEU 40 3.236 -1.876 -5.783 1.00 0.31 C ATOM 642 C LEU 40 2.647 -3.252 -6.064 1.00 0.31 C ATOM 643 O LEU 40 1.617 -3.624 -5.501 1.00 0.31 O ATOM 644 CB LEU 40 3.715 -1.805 -4.328 1.00 0.31 C ATOM 645 CG LEU 40 4.678 -2.916 -3.891 1.00 0.31 C ATOM 646 CD1 LEU 40 5.961 -2.828 -4.708 1.00 0.31 C ATOM 647 CD2 LEU 40 4.969 -2.780 -2.403 1.00 0.31 C ATOM 659 N CYS 41 3.306 -4.005 -6.939 1.00 0.44 N ATOM 660 CA CYS 41 2.838 -5.335 -7.309 1.00 0.44 C ATOM 661 C CYS 41 4.005 -6.292 -7.515 1.00 0.44 C ATOM 662 O CYS 41 4.539 -6.798 -6.566 1.00 0.44 O ATOM 663 OXT CYS 41 4.391 -6.540 -8.624 1.00 0.44 O ATOM 664 CB CYS 41 2.005 -5.275 -8.590 1.00 0.44 C ATOM 665 SG CYS 41 1.335 -6.871 -9.111 1.00 0.44 S TER END