####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS043_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.77 1.77 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.77 1.77 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.75 2.45 LCS_AVERAGE: 40.27 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 3 14 24 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 9 17 23 34 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 9 20 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 9 20 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 41 41 9 22 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 41 41 10 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 41 41 12 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 41 41 15 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 14 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 9 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 9 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 9 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 19 41 41 4 6 22 33 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 14 41 41 4 6 14 26 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 41 41 3 4 12 12 19 32 37 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 8 41 41 3 5 8 17 22 34 37 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 15 41 41 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 15 41 41 11 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 3 23 32 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 3 16 26 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 7 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 12 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 9 21 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 6 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 11 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 5 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 80.09 ( 40.27 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 29 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 39.02 70.73 80.49 85.37 87.80 90.24 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.62 0.87 0.98 1.07 1.16 1.46 1.64 1.60 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 GDT RMS_ALL_AT 2.15 1.97 1.87 1.83 1.83 1.82 1.78 1.78 1.79 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 1.77 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.034 0 0.140 0.646 6.231 4.545 6.061 5.234 LGA Q 2 Q 2 3.054 0 0.204 0.951 3.863 28.182 21.818 3.342 LGA E 3 E 3 1.844 0 0.018 1.418 7.194 51.364 27.273 7.194 LGA T 4 T 4 1.833 0 0.020 1.113 3.532 54.545 45.455 3.532 LGA R 5 R 5 1.841 0 0.017 0.216 5.199 58.182 28.099 5.199 LGA K 6 K 6 1.277 0 0.024 1.272 5.603 69.545 45.859 5.364 LGA K 7 K 7 0.534 0 0.038 0.660 3.108 81.818 56.566 3.108 LGA C 8 C 8 0.555 0 0.036 0.759 2.644 86.364 75.758 2.644 LGA T 9 T 9 1.231 0 0.015 0.099 2.070 69.545 59.740 1.648 LGA E 10 E 10 1.336 0 0.029 0.417 2.267 65.455 57.576 1.762 LGA M 11 M 11 0.701 0 0.032 0.092 1.265 86.364 80.000 1.265 LGA K 12 K 12 0.500 0 0.028 0.658 2.098 81.818 72.121 2.007 LGA K 13 K 13 1.066 0 0.044 0.583 2.456 69.545 62.626 2.456 LGA K 14 K 14 1.200 0 0.030 0.627 3.826 65.455 57.778 3.826 LGA F 15 F 15 0.439 0 0.087 0.248 2.504 95.455 70.744 2.278 LGA K 16 K 16 0.839 0 0.044 1.247 5.587 81.818 51.313 5.281 LGA N 17 N 17 0.598 0 0.206 0.471 1.936 90.909 78.409 1.936 LGA C 18 C 18 1.098 0 0.035 0.045 1.151 69.545 68.182 1.151 LGA E 19 E 19 1.190 0 0.176 0.449 2.686 73.636 60.000 1.777 LGA V 20 V 20 1.177 0 0.044 0.060 1.392 65.455 67.792 0.978 LGA R 21 R 21 1.267 0 0.098 1.217 3.934 69.545 56.033 2.428 LGA C 22 C 22 2.654 0 0.038 0.739 5.186 32.727 23.636 5.186 LGA D 23 D 23 3.306 0 0.011 1.248 5.254 14.545 12.273 3.942 LGA E 24 E 24 4.773 0 0.019 0.612 10.515 13.182 5.859 9.228 LGA S 25 S 25 1.184 0 0.209 0.725 5.521 43.182 31.818 5.521 LGA N 26 N 26 4.785 0 0.261 1.172 9.114 10.455 5.227 6.223 LGA H 27 H 27 0.809 0 0.418 1.172 7.506 82.273 38.000 7.506 LGA C 28 C 28 0.431 0 0.115 0.154 0.767 90.909 90.909 0.734 LGA V 29 V 29 0.358 0 0.034 0.053 0.582 95.455 94.805 0.409 LGA E 30 E 30 0.492 0 0.083 0.616 1.877 95.455 79.192 1.877 LGA V 31 V 31 0.367 0 0.098 0.124 0.504 95.455 97.403 0.416 LGA R 32 R 32 0.765 0 0.104 0.981 7.047 86.364 49.091 7.047 LGA C 33 C 33 0.665 0 0.459 0.532 2.520 68.182 72.727 0.891 LGA S 34 S 34 1.322 0 0.222 0.735 2.623 52.273 49.697 2.096 LGA D 35 D 35 1.909 0 0.112 1.014 3.396 54.545 44.091 3.396 LGA T 36 T 36 1.678 0 0.262 1.116 4.726 70.000 51.429 4.726 LGA K 37 K 37 0.342 0 0.130 1.527 5.390 82.273 58.384 5.390 LGA Y 38 Y 38 1.099 0 0.027 1.343 5.065 86.818 51.970 5.065 LGA T 39 T 39 0.738 0 0.049 0.079 2.046 74.091 62.338 1.542 LGA L 40 L 40 0.285 0 0.064 0.980 3.767 95.455 65.000 3.767 LGA C 41 C 41 1.062 0 0.107 0.198 2.449 82.273 71.429 2.449 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.772 1.712 2.733 66.951 53.768 30.200 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.64 88.415 93.282 2.302 LGA_LOCAL RMSD: 1.638 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.782 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.772 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.709658 * X + 0.340748 * Y + -0.616666 * Z + -3.430779 Y_new = -0.590935 * X + 0.764478 * Y + -0.257623 * Z + -12.020958 Z_new = 0.383644 * X + 0.547233 * Y + 0.743877 * Z + 1.353621 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.694367 -0.393739 0.634254 [DEG: -39.7843 -22.5596 36.3401 ] ZXZ: -1.175068 0.731943 0.611437 [DEG: -67.3265 41.9372 35.0328 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS043_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.64 93.282 1.77 REMARK ---------------------------------------------------------- MOLECULE T0955TS043_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 1 N SER 1 -3.431 -12.021 1.354 1.00 0.90 N ATOM 2 CA SER 1 -2.396 -12.883 1.913 1.00 0.90 C ATOM 3 C SER 1 -1.521 -12.123 2.901 1.00 0.90 C ATOM 4 O SER 1 -1.590 -10.896 2.991 1.00 0.90 O ATOM 5 CB SER 1 -1.538 -13.456 0.803 1.00 0.90 C ATOM 6 OG SER 1 -0.725 -12.467 0.233 1.00 0.90 O ATOM 14 N GLN 2 -0.699 -12.857 3.643 1.00 0.65 N ATOM 15 CA GLN 2 0.249 -12.249 4.568 1.00 0.65 C ATOM 16 C GLN 2 1.336 -11.486 3.821 1.00 0.65 C ATOM 17 O GLN 2 1.827 -10.462 4.295 1.00 0.65 O ATOM 18 CB GLN 2 0.881 -13.314 5.467 1.00 0.65 C ATOM 19 CG GLN 2 1.778 -12.757 6.559 1.00 0.65 C ATOM 20 CD GLN 2 1.026 -11.855 7.520 1.00 0.65 C ATOM 21 OE1 GLN 2 -0.098 -12.160 7.929 1.00 0.65 O ATOM 22 NE2 GLN 2 1.643 -10.736 7.885 1.00 0.65 N ATOM 31 N GLU 3 1.709 -11.992 2.651 1.00 0.47 N ATOM 32 CA GLU 3 2.686 -11.322 1.802 1.00 0.47 C ATOM 33 C GLU 3 2.130 -10.018 1.245 1.00 0.47 C ATOM 34 O GLU 3 2.865 -9.048 1.059 1.00 0.47 O ATOM 35 CB GLU 3 3.112 -12.238 0.653 1.00 0.47 C ATOM 36 CG GLU 3 3.903 -13.465 1.087 1.00 0.47 C ATOM 37 CD GLU 3 5.189 -13.116 1.783 1.00 0.47 C ATOM 38 OE1 GLU 3 5.916 -12.299 1.272 1.00 0.47 O ATOM 39 OE2 GLU 3 5.443 -13.667 2.829 1.00 0.47 O ATOM 46 N THR 4 0.828 -10.002 0.979 1.00 0.55 N ATOM 47 CA THR 4 0.137 -8.772 0.609 1.00 0.55 C ATOM 48 C THR 4 0.180 -7.755 1.742 1.00 0.55 C ATOM 49 O THR 4 0.392 -6.564 1.512 1.00 0.55 O ATOM 50 CB THR 4 -1.326 -9.054 0.221 1.00 0.55 C ATOM 51 OG1 THR 4 -1.363 -9.966 -0.884 1.00 0.55 O ATOM 52 CG2 THR 4 -2.032 -7.764 -0.168 1.00 0.55 C ATOM 60 N ARG 5 -0.025 -8.230 2.965 1.00 0.50 N ATOM 61 CA ARG 5 0.060 -7.375 4.144 1.00 0.50 C ATOM 62 C ARG 5 1.457 -6.788 4.299 1.00 0.50 C ATOM 63 O ARG 5 1.614 -5.634 4.698 1.00 0.50 O ATOM 64 CB ARG 5 -0.301 -8.156 5.399 1.00 0.50 C ATOM 65 CG ARG 5 -1.769 -8.536 5.515 1.00 0.50 C ATOM 66 CD ARG 5 -2.016 -9.424 6.681 1.00 0.50 C ATOM 67 NE ARG 5 -3.423 -9.762 6.816 1.00 0.50 N ATOM 68 CZ ARG 5 -3.896 -10.788 7.549 1.00 0.50 C ATOM 69 NH1 ARG 5 -3.064 -11.567 8.204 1.00 0.50 N ATOM 70 NH2 ARG 5 -5.197 -11.014 7.609 1.00 0.50 N ATOM 84 N LYS 6 2.468 -7.589 3.983 1.00 0.25 N ATOM 85 CA LYS 6 3.850 -7.122 4.000 1.00 0.25 C ATOM 86 C LYS 6 4.069 -6.008 2.987 1.00 0.25 C ATOM 87 O LYS 6 4.724 -5.008 3.280 1.00 0.25 O ATOM 88 CB LYS 6 4.810 -8.281 3.724 1.00 0.25 C ATOM 89 CG LYS 6 4.903 -9.303 4.849 1.00 0.25 C ATOM 90 CD LYS 6 5.820 -10.457 4.473 1.00 0.25 C ATOM 91 CE LYS 6 5.837 -11.527 5.555 1.00 0.25 C ATOM 92 NZ LYS 6 6.676 -12.694 5.170 1.00 0.25 N ATOM 106 N LYS 7 3.514 -6.185 1.791 1.00 0.24 N ATOM 107 CA LYS 7 3.630 -5.184 0.737 1.00 0.24 C ATOM 108 C LYS 7 2.935 -3.887 1.132 1.00 0.24 C ATOM 109 O LYS 7 3.446 -2.796 0.881 1.00 0.24 O ATOM 110 CB LYS 7 3.047 -5.716 -0.573 1.00 0.24 C ATOM 111 CG LYS 7 3.888 -6.792 -1.245 1.00 0.24 C ATOM 112 CD LYS 7 3.252 -7.259 -2.545 1.00 0.24 C ATOM 113 CE LYS 7 4.091 -8.335 -3.218 1.00 0.24 C ATOM 114 NZ LYS 7 3.492 -8.787 -4.503 1.00 0.24 N ATOM 128 N CYS 8 1.767 -4.013 1.752 1.00 0.29 N ATOM 129 CA CYS 8 1.035 -2.854 2.250 1.00 0.29 C ATOM 130 C CYS 8 1.806 -2.153 3.361 1.00 0.29 C ATOM 131 O CYS 8 1.883 -0.924 3.395 1.00 0.29 O ATOM 132 CB CYS 8 -0.338 -3.271 2.777 1.00 0.29 C ATOM 133 SG CYS 8 -1.498 -3.787 1.488 1.00 0.29 S ATOM 139 N THR 9 2.378 -2.939 4.266 1.00 0.31 N ATOM 140 CA THR 9 3.164 -2.394 5.367 1.00 0.31 C ATOM 141 C THR 9 4.344 -1.581 4.853 1.00 0.31 C ATOM 142 O THR 9 4.634 -0.499 5.364 1.00 0.31 O ATOM 143 CB THR 9 3.672 -3.515 6.292 1.00 0.31 C ATOM 144 OG1 THR 9 2.557 -4.218 6.855 1.00 0.31 O ATOM 145 CG2 THR 9 4.521 -2.937 7.415 1.00 0.31 C ATOM 153 N GLU 10 5.021 -2.107 3.837 1.00 0.24 N ATOM 154 CA GLU 10 6.114 -1.390 3.193 1.00 0.24 C ATOM 155 C GLU 10 5.664 -0.019 2.707 1.00 0.24 C ATOM 156 O GLU 10 6.323 0.989 2.961 1.00 0.24 O ATOM 157 CB GLU 10 6.667 -2.202 2.019 1.00 0.24 C ATOM 158 CG GLU 10 7.799 -1.524 1.261 1.00 0.24 C ATOM 159 CD GLU 10 8.286 -2.331 0.091 1.00 0.24 C ATOM 160 OE1 GLU 10 7.959 -3.491 0.016 1.00 0.24 O ATOM 161 OE2 GLU 10 8.985 -1.786 -0.731 1.00 0.24 O ATOM 168 N MET 11 4.536 0.013 2.003 1.00 0.25 N ATOM 169 CA MET 11 4.005 1.259 1.464 1.00 0.25 C ATOM 170 C MET 11 3.591 2.210 2.578 1.00 0.25 C ATOM 171 O MET 11 3.724 3.427 2.451 1.00 0.25 O ATOM 172 CB MET 11 2.822 0.971 0.540 1.00 0.25 C ATOM 173 CG MET 11 3.192 0.260 -0.753 1.00 0.25 C ATOM 174 SD MET 11 4.288 1.241 -1.798 1.00 0.25 S ATOM 175 CE MET 11 5.887 0.615 -1.290 1.00 0.25 C ATOM 185 N LYS 12 3.088 1.648 3.672 1.00 0.30 N ATOM 186 CA LYS 12 2.682 2.444 4.825 1.00 0.30 C ATOM 187 C LYS 12 3.884 3.098 5.494 1.00 0.30 C ATOM 188 O LYS 12 3.805 4.234 5.960 1.00 0.30 O ATOM 189 CB LYS 12 1.925 1.579 5.833 1.00 0.30 C ATOM 190 CG LYS 12 0.522 1.182 5.393 1.00 0.30 C ATOM 191 CD LYS 12 -0.149 0.288 6.426 1.00 0.30 C ATOM 192 CE LYS 12 -1.549 -0.113 5.985 1.00 0.30 C ATOM 193 NZ LYS 12 -2.217 -0.989 6.987 1.00 0.30 N ATOM 207 N LYS 13 4.997 2.374 5.538 1.00 0.35 N ATOM 208 CA LYS 13 6.226 2.892 6.127 1.00 0.35 C ATOM 209 C LYS 13 6.873 3.935 5.224 1.00 0.35 C ATOM 210 O LYS 13 7.417 4.931 5.702 1.00 0.35 O ATOM 211 CB LYS 13 7.209 1.754 6.403 1.00 0.35 C ATOM 212 CG LYS 13 6.813 0.847 7.561 1.00 0.35 C ATOM 213 CD LYS 13 7.844 -0.250 7.783 1.00 0.35 C ATOM 214 CE LYS 13 7.497 -1.101 8.994 1.00 0.35 C ATOM 215 NZ LYS 13 8.483 -2.195 9.207 1.00 0.35 N ATOM 229 N LYS 14 6.809 3.700 3.918 1.00 0.48 N ATOM 230 CA LYS 14 7.405 4.610 2.947 1.00 0.48 C ATOM 231 C LYS 14 6.509 5.816 2.697 1.00 0.48 C ATOM 232 O LYS 14 6.989 6.902 2.374 1.00 0.48 O ATOM 233 CB LYS 14 7.684 3.880 1.632 1.00 0.48 C ATOM 234 CG LYS 14 8.828 2.878 1.700 1.00 0.48 C ATOM 235 CD LYS 14 9.024 2.172 0.365 1.00 0.48 C ATOM 236 CE LYS 14 10.260 1.284 0.384 1.00 0.48 C ATOM 237 NZ LYS 14 10.407 0.510 -0.878 1.00 0.48 N ATOM 251 N PHE 15 5.204 5.618 2.849 1.00 0.58 N ATOM 252 CA PHE 15 4.238 6.693 2.655 1.00 0.58 C ATOM 253 C PHE 15 3.322 6.834 3.864 1.00 0.58 C ATOM 254 O PHE 15 2.134 6.518 3.796 1.00 0.58 O ATOM 255 CB PHE 15 3.400 6.439 1.401 1.00 0.58 C ATOM 256 CG PHE 15 4.214 6.291 0.148 1.00 0.58 C ATOM 257 CD1 PHE 15 4.550 5.033 -0.332 1.00 0.58 C ATOM 258 CD2 PHE 15 4.648 7.406 -0.552 1.00 0.58 C ATOM 259 CE1 PHE 15 5.300 4.895 -1.485 1.00 0.58 C ATOM 260 CE2 PHE 15 5.397 7.271 -1.705 1.00 0.58 C ATOM 261 CZ PHE 15 5.723 6.012 -2.172 1.00 0.58 C ATOM 271 N LYS 16 3.881 7.311 4.971 1.00 0.87 N ATOM 272 CA LYS 16 3.168 7.327 6.244 1.00 0.87 C ATOM 273 C LYS 16 2.023 8.331 6.220 1.00 0.87 C ATOM 274 O LYS 16 1.038 8.180 6.943 1.00 0.87 O ATOM 275 CB LYS 16 4.127 7.650 7.390 1.00 0.87 C ATOM 276 CG LYS 16 5.132 6.548 7.700 1.00 0.87 C ATOM 277 CD LYS 16 6.057 6.947 8.839 1.00 0.87 C ATOM 278 CE LYS 16 7.060 5.846 9.151 1.00 0.87 C ATOM 279 NZ LYS 16 7.998 6.240 10.238 1.00 0.87 N ATOM 293 N ASN 17 2.158 9.356 5.386 1.00 0.81 N ATOM 294 CA ASN 17 1.170 10.426 5.320 1.00 0.81 C ATOM 295 C ASN 17 0.193 10.203 4.172 1.00 0.81 C ATOM 296 O ASN 17 -0.561 11.104 3.802 1.00 0.81 O ATOM 297 CB ASN 17 1.851 11.775 5.187 1.00 0.81 C ATOM 298 CG ASN 17 2.605 12.166 6.428 1.00 0.81 C ATOM 299 OD1 ASN 17 2.143 11.929 7.550 1.00 0.81 O ATOM 300 ND2 ASN 17 3.757 12.760 6.248 1.00 0.81 N ATOM 307 N CYS 18 0.210 8.998 3.612 1.00 0.51 N ATOM 308 CA CYS 18 -0.644 8.667 2.478 1.00 0.51 C ATOM 309 C CYS 18 -1.577 7.510 2.809 1.00 0.51 C ATOM 310 O CYS 18 -1.372 6.798 3.793 1.00 0.51 O ATOM 311 CB CYS 18 0.201 8.302 1.257 1.00 0.51 C ATOM 312 SG CYS 18 1.367 9.589 0.754 1.00 0.51 S ATOM 318 N GLU 19 -2.600 7.326 1.983 1.00 0.45 N ATOM 319 CA GLU 19 -3.552 6.237 2.173 1.00 0.45 C ATOM 320 C GLU 19 -3.120 4.990 1.414 1.00 0.45 C ATOM 321 O GLU 19 -2.935 5.026 0.197 1.00 0.45 O ATOM 322 CB GLU 19 -4.949 6.666 1.719 1.00 0.45 C ATOM 323 CG GLU 19 -6.029 5.613 1.928 1.00 0.45 C ATOM 324 CD GLU 19 -7.393 6.081 1.502 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.503 7.196 1.050 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.325 5.323 1.628 1.00 0.45 O ATOM 333 N VAL 20 -2.964 3.887 2.139 1.00 0.38 N ATOM 334 CA VAL 20 -2.488 2.643 1.546 1.00 0.38 C ATOM 335 C VAL 20 -3.539 1.545 1.647 1.00 0.38 C ATOM 336 O VAL 20 -4.005 1.219 2.739 1.00 0.38 O ATOM 337 CB VAL 20 -1.196 2.179 2.246 1.00 0.38 C ATOM 338 CG1 VAL 20 -0.706 0.869 1.647 1.00 0.38 C ATOM 339 CG2 VAL 20 -0.129 3.257 2.133 1.00 0.38 C ATOM 349 N ARG 21 -3.909 0.981 0.503 1.00 0.45 N ATOM 350 CA ARG 21 -4.892 -0.095 0.464 1.00 0.45 C ATOM 351 C ARG 21 -4.565 -1.100 -0.633 1.00 0.45 C ATOM 352 O ARG 21 -3.935 -0.758 -1.634 1.00 0.45 O ATOM 353 CB ARG 21 -6.288 0.465 0.233 1.00 0.45 C ATOM 354 CG ARG 21 -6.514 1.076 -1.140 1.00 0.45 C ATOM 355 CD ARG 21 -7.902 1.583 -1.294 1.00 0.45 C ATOM 356 NE ARG 21 -8.158 2.061 -2.644 1.00 0.45 N ATOM 357 CZ ARG 21 -9.335 2.561 -3.068 1.00 0.45 C ATOM 358 NH1 ARG 21 -10.352 2.643 -2.239 1.00 0.45 N ATOM 359 NH2 ARG 21 -9.467 2.970 -4.317 1.00 0.45 N ATOM 373 N CYS 22 -4.995 -2.343 -0.437 1.00 0.75 N ATOM 374 CA CYS 22 -4.838 -3.376 -1.454 1.00 0.75 C ATOM 375 C CYS 22 -6.089 -3.496 -2.315 1.00 0.75 C ATOM 376 O CYS 22 -7.175 -3.078 -1.911 1.00 0.75 O ATOM 377 CB CYS 22 -4.542 -4.728 -0.804 1.00 0.75 C ATOM 378 SG CYS 22 -5.898 -5.380 0.198 1.00 0.75 S ATOM 384 N ASP 23 -5.930 -4.068 -3.504 1.00 0.73 N ATOM 385 CA ASP 23 -7.051 -4.272 -4.413 1.00 0.73 C ATOM 386 C ASP 23 -7.837 -5.525 -4.046 1.00 0.73 C ATOM 387 O ASP 23 -7.502 -6.220 -3.087 1.00 0.73 O ATOM 388 CB ASP 23 -6.560 -4.374 -5.858 1.00 0.73 C ATOM 389 CG ASP 23 -5.742 -5.633 -6.117 1.00 0.73 C ATOM 390 OD1 ASP 23 -5.955 -6.607 -5.435 1.00 0.73 O ATOM 391 OD2 ASP 23 -4.911 -5.606 -6.993 1.00 0.73 O ATOM 396 N GLU 24 -8.883 -5.807 -4.815 1.00 1.11 N ATOM 397 CA GLU 24 -9.824 -6.866 -4.469 1.00 1.11 C ATOM 398 C GLU 24 -9.147 -8.231 -4.490 1.00 1.11 C ATOM 399 O GLU 24 -9.515 -9.127 -3.730 1.00 1.11 O ATOM 400 CB GLU 24 -11.011 -6.860 -5.434 1.00 1.11 C ATOM 401 CG GLU 24 -11.929 -5.654 -5.294 1.00 1.11 C ATOM 402 CD GLU 24 -13.056 -5.658 -6.289 1.00 1.11 C ATOM 403 OE1 GLU 24 -13.046 -6.488 -7.167 1.00 1.11 O ATOM 404 OE2 GLU 24 -13.930 -4.831 -6.170 1.00 1.11 O ATOM 411 N SER 25 -8.158 -8.383 -5.362 1.00 0.67 N ATOM 412 CA SER 25 -7.461 -9.655 -5.518 1.00 0.67 C ATOM 413 C SER 25 -6.284 -9.759 -4.558 1.00 0.67 C ATOM 414 O SER 25 -5.616 -10.790 -4.489 1.00 0.67 O ATOM 415 CB SER 25 -6.976 -9.813 -6.947 1.00 0.67 C ATOM 416 OG SER 25 -5.992 -8.864 -7.250 1.00 0.67 O ATOM 422 N ASN 26 -6.034 -8.684 -3.818 1.00 0.30 N ATOM 423 CA ASN 26 -4.892 -8.626 -2.913 1.00 0.30 C ATOM 424 C ASN 26 -3.579 -8.760 -3.673 1.00 0.30 C ATOM 425 O ASN 26 -2.604 -9.304 -3.156 1.00 0.30 O ATOM 426 CB ASN 26 -5.002 -9.697 -1.844 1.00 0.30 C ATOM 427 CG ASN 26 -6.225 -9.534 -0.985 1.00 0.30 C ATOM 428 OD1 ASN 26 -6.525 -8.431 -0.512 1.00 0.30 O ATOM 429 ND2 ASN 26 -6.939 -10.611 -0.773 1.00 0.30 N ATOM 436 N HIS 27 -3.561 -8.260 -4.905 1.00 0.61 N ATOM 437 CA HIS 27 -2.388 -8.380 -5.762 1.00 0.61 C ATOM 438 C HIS 27 -1.585 -7.085 -5.781 1.00 0.61 C ATOM 439 O HIS 27 -0.386 -7.084 -5.503 1.00 0.61 O ATOM 440 CB HIS 27 -2.798 -8.753 -7.191 1.00 0.61 C ATOM 441 CG HIS 27 -1.639 -8.955 -8.116 1.00 0.61 C ATOM 442 ND1 HIS 27 -0.734 -9.984 -7.960 1.00 0.61 N ATOM 443 CD2 HIS 27 -1.236 -8.260 -9.206 1.00 0.61 C ATOM 444 CE1 HIS 27 0.176 -9.914 -8.917 1.00 0.61 C ATOM 445 NE2 HIS 27 -0.106 -8.878 -9.685 1.00 0.61 N ATOM 453 N CYS 28 -2.254 -5.985 -6.110 1.00 0.42 N ATOM 454 CA CYS 28 -1.603 -4.680 -6.161 1.00 0.42 C ATOM 455 C CYS 28 -1.961 -3.839 -4.943 1.00 0.42 C ATOM 456 O CYS 28 -3.017 -4.023 -4.337 1.00 0.42 O ATOM 457 CB CYS 28 -2.006 -3.928 -7.429 1.00 0.42 C ATOM 458 SG CYS 28 -1.482 -4.732 -8.963 1.00 0.42 S ATOM 464 N VAL 29 -1.074 -2.916 -4.587 1.00 0.29 N ATOM 465 CA VAL 29 -1.333 -1.986 -3.494 1.00 0.29 C ATOM 466 C VAL 29 -1.415 -0.551 -3.999 1.00 0.29 C ATOM 467 O VAL 29 -0.477 -0.046 -4.615 1.00 0.29 O ATOM 468 CB VAL 29 -0.223 -2.090 -2.430 1.00 0.29 C ATOM 469 CG1 VAL 29 -0.478 -1.107 -1.297 1.00 0.29 C ATOM 470 CG2 VAL 29 -0.144 -3.514 -1.902 1.00 0.29 C ATOM 480 N GLU 30 -2.542 0.100 -3.735 1.00 0.26 N ATOM 481 CA GLU 30 -2.748 1.479 -4.161 1.00 0.26 C ATOM 482 C GLU 30 -2.342 2.460 -3.069 1.00 0.26 C ATOM 483 O GLU 30 -2.801 2.362 -1.930 1.00 0.26 O ATOM 484 CB GLU 30 -4.213 1.705 -4.544 1.00 0.26 C ATOM 485 CG GLU 30 -4.523 3.111 -5.038 1.00 0.26 C ATOM 486 CD GLU 30 -5.979 3.314 -5.349 1.00 0.26 C ATOM 487 OE1 GLU 30 -6.756 2.432 -5.068 1.00 0.26 O ATOM 488 OE2 GLU 30 -6.317 4.352 -5.868 1.00 0.26 O ATOM 495 N VAL 31 -1.478 3.405 -3.422 1.00 0.32 N ATOM 496 CA VAL 31 -1.087 4.468 -2.504 1.00 0.32 C ATOM 497 C VAL 31 -1.551 5.828 -3.004 1.00 0.32 C ATOM 498 O VAL 31 -1.152 6.275 -4.080 1.00 0.32 O ATOM 499 CB VAL 31 0.443 4.484 -2.326 1.00 0.32 C ATOM 500 CG1 VAL 31 0.857 5.593 -1.370 1.00 0.32 C ATOM 501 CG2 VAL 31 0.921 3.131 -1.821 1.00 0.32 C ATOM 511 N ARG 32 -2.398 6.485 -2.219 1.00 0.30 N ATOM 512 CA ARG 32 -2.942 7.784 -2.595 1.00 0.30 C ATOM 513 C ARG 32 -2.187 8.917 -1.911 1.00 0.30 C ATOM 514 O ARG 32 -2.253 9.072 -0.692 1.00 0.30 O ATOM 515 CB ARG 32 -4.418 7.872 -2.234 1.00 0.30 C ATOM 516 CG ARG 32 -5.094 9.178 -2.623 1.00 0.30 C ATOM 517 CD ARG 32 -6.553 9.145 -2.341 1.00 0.30 C ATOM 518 NE ARG 32 -6.828 9.052 -0.917 1.00 0.30 N ATOM 519 CZ ARG 32 -6.907 10.107 -0.082 1.00 0.30 C ATOM 520 NH1 ARG 32 -6.729 11.325 -0.544 1.00 0.30 N ATOM 521 NH2 ARG 32 -7.163 9.917 1.201 1.00 0.30 N ATOM 535 N CYS 33 -1.469 9.706 -2.703 1.00 0.67 N ATOM 536 CA CYS 33 -0.735 10.852 -2.181 1.00 0.67 C ATOM 537 C CYS 33 -1.415 12.160 -2.560 1.00 0.67 C ATOM 538 O CYS 33 -2.352 12.175 -3.360 1.00 0.67 O ATOM 539 CB CYS 33 0.700 10.858 -2.708 1.00 0.67 C ATOM 540 SG CYS 33 1.624 9.345 -2.354 1.00 0.67 S ATOM 546 N SER 34 -0.940 13.259 -1.982 1.00 1.30 N ATOM 547 CA SER 34 -1.475 14.579 -2.290 1.00 1.30 C ATOM 548 C SER 34 -1.109 15.007 -3.705 1.00 1.30 C ATOM 549 O SER 34 -1.790 15.834 -4.310 1.00 1.30 O ATOM 550 CB SER 34 -0.955 15.598 -1.294 1.00 1.30 C ATOM 551 OG SER 34 0.425 15.786 -1.443 1.00 1.30 O ATOM 557 N ASP 35 -0.029 14.436 -4.229 1.00 2.34 N ATOM 558 CA ASP 35 0.447 14.780 -5.563 1.00 2.34 C ATOM 559 C ASP 35 -0.078 13.800 -6.605 1.00 2.34 C ATOM 560 O ASP 35 -0.657 14.202 -7.613 1.00 2.34 O ATOM 561 CB ASP 35 1.978 14.800 -5.598 1.00 2.34 C ATOM 562 CG ASP 35 2.574 15.911 -4.743 1.00 2.34 C ATOM 563 OD1 ASP 35 1.851 16.805 -4.376 1.00 2.34 O ATOM 564 OD2 ASP 35 3.748 15.852 -4.466 1.00 2.34 O ATOM 569 N THR 36 0.131 12.512 -6.355 1.00 0.51 N ATOM 570 CA THR 36 -0.235 11.477 -7.314 1.00 0.51 C ATOM 571 C THR 36 -0.518 10.153 -6.616 1.00 0.51 C ATOM 572 O THR 36 -0.648 10.101 -5.392 1.00 0.51 O ATOM 573 CB THR 36 0.873 11.279 -8.366 1.00 0.51 C ATOM 574 OG1 THR 36 0.399 10.414 -9.407 1.00 0.51 O ATOM 575 CG2 THR 36 2.111 10.667 -7.728 1.00 0.51 C ATOM 583 N LYS 37 -0.613 9.085 -7.400 1.00 0.39 N ATOM 584 CA LYS 37 -0.819 7.749 -6.852 1.00 0.39 C ATOM 585 C LYS 37 0.335 6.823 -7.214 1.00 0.39 C ATOM 586 O LYS 37 1.004 7.016 -8.230 1.00 0.39 O ATOM 587 CB LYS 37 -2.140 7.163 -7.351 1.00 0.39 C ATOM 588 CG LYS 37 -3.381 7.856 -6.805 1.00 0.39 C ATOM 589 CD LYS 37 -4.647 7.107 -7.192 1.00 0.39 C ATOM 590 CE LYS 37 -5.881 7.740 -6.563 1.00 0.39 C ATOM 591 NZ LYS 37 -7.116 6.965 -6.858 1.00 0.39 N ATOM 605 N TYR 38 0.563 5.815 -6.378 1.00 0.26 N ATOM 606 CA TYR 38 1.564 4.794 -6.664 1.00 0.26 C ATOM 607 C TYR 38 0.951 3.399 -6.639 1.00 0.26 C ATOM 608 O TYR 38 0.035 3.127 -5.862 1.00 0.26 O ATOM 609 CB TYR 38 2.720 4.883 -5.665 1.00 0.26 C ATOM 610 CG TYR 38 3.477 6.191 -5.723 1.00 0.26 C ATOM 611 CD1 TYR 38 3.075 7.261 -4.937 1.00 0.26 C ATOM 612 CD2 TYR 38 4.574 6.321 -6.562 1.00 0.26 C ATOM 613 CE1 TYR 38 3.767 8.455 -4.989 1.00 0.26 C ATOM 614 CE2 TYR 38 5.266 7.516 -6.615 1.00 0.26 C ATOM 615 CZ TYR 38 4.865 8.580 -5.833 1.00 0.26 C ATOM 616 OH TYR 38 5.554 9.770 -5.885 1.00 0.26 O ATOM 626 N THR 39 1.460 2.520 -7.493 1.00 0.37 N ATOM 627 CA THR 39 0.977 1.145 -7.557 1.00 0.37 C ATOM 628 C THR 39 2.109 0.152 -7.329 1.00 0.37 C ATOM 629 O THR 39 3.084 0.123 -8.079 1.00 0.37 O ATOM 630 CB THR 39 0.302 0.857 -8.911 1.00 0.37 C ATOM 631 OG1 THR 39 -0.809 1.745 -9.093 1.00 0.37 O ATOM 632 CG2 THR 39 -0.190 -0.581 -8.967 1.00 0.37 C ATOM 640 N LEU 40 1.974 -0.662 -6.287 1.00 0.31 N ATOM 641 CA LEU 40 2.943 -1.714 -6.006 1.00 0.31 C ATOM 642 C LEU 40 2.420 -3.077 -6.443 1.00 0.31 C ATOM 643 O LEU 40 1.345 -3.503 -6.022 1.00 0.31 O ATOM 644 CB LEU 40 3.275 -1.742 -4.508 1.00 0.31 C ATOM 645 CG LEU 40 4.230 -2.856 -4.060 1.00 0.31 C ATOM 646 CD1 LEU 40 5.598 -2.638 -4.690 1.00 0.31 C ATOM 647 CD2 LEU 40 4.322 -2.865 -2.541 1.00 0.31 C ATOM 659 N CYS 41 3.188 -3.755 -7.288 1.00 0.44 N ATOM 660 CA CYS 41 2.780 -5.051 -7.821 1.00 0.44 C ATOM 661 C CYS 41 3.547 -6.186 -7.156 1.00 0.44 C ATOM 662 O CYS 41 3.213 -6.581 -6.073 1.00 0.44 O ATOM 663 OXT CYS 41 4.485 -6.685 -7.713 1.00 0.44 O ATOM 664 CB CYS 41 3.008 -5.105 -9.332 1.00 0.44 C ATOM 665 SG CYS 41 2.042 -3.897 -10.269 1.00 0.44 S TER END