####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS041_5 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 5 - 40 4.96 6.48 LCS_AVERAGE: 85.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 1 - 18 1.76 9.73 LCS_AVERAGE: 34.86 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 1.00 10.40 LCS_AVERAGE: 23.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 18 26 3 3 4 13 18 20 22 22 23 25 26 27 28 31 31 31 31 34 36 37 LCS_GDT Q 2 Q 2 15 18 26 6 11 13 15 17 21 22 22 23 25 26 27 30 31 32 35 36 38 39 39 LCS_GDT E 3 E 3 15 18 28 7 12 14 16 18 21 22 22 23 25 26 27 30 32 33 35 37 38 39 39 LCS_GDT T 4 T 4 15 18 28 6 12 14 16 18 21 22 22 23 25 26 27 30 31 33 35 36 38 39 39 LCS_GDT R 5 R 5 15 18 36 6 12 13 16 18 21 22 22 23 25 26 27 30 31 33 35 37 38 39 39 LCS_GDT K 6 K 6 15 18 36 7 12 14 16 18 21 22 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT K 7 K 7 15 18 36 8 12 14 16 18 21 22 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT C 8 C 8 15 18 36 8 12 14 16 18 21 22 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT T 9 T 9 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT E 10 E 10 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT M 11 M 11 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT K 12 K 12 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT K 13 K 13 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT K 14 K 14 15 18 36 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT F 15 F 15 15 18 36 5 11 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT K 16 K 16 15 18 36 5 7 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT N 17 N 17 11 18 36 5 7 14 16 18 21 22 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT C 18 C 18 8 18 36 3 7 9 11 14 16 19 20 22 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT E 19 E 19 8 14 36 3 7 9 9 14 15 17 20 22 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT V 20 V 20 8 12 36 3 7 9 9 11 14 17 20 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT R 21 R 21 8 12 36 3 7 9 9 11 13 17 18 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT C 22 C 22 8 12 36 3 7 9 9 11 14 17 19 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT D 23 D 23 8 12 36 3 7 9 9 11 14 17 19 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT E 24 E 24 4 11 36 3 4 5 9 11 14 16 19 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT S 25 S 25 4 11 36 2 4 7 9 11 14 16 19 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT N 26 N 26 3 10 36 2 3 5 7 10 15 17 19 21 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT H 27 H 27 8 12 36 6 8 8 10 13 14 18 19 20 23 26 28 29 34 35 35 37 38 39 39 LCS_GDT C 28 C 28 8 12 36 6 8 8 10 15 17 18 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT V 29 V 29 8 12 36 6 8 8 10 13 17 18 22 23 25 26 30 32 34 35 35 37 38 39 39 LCS_GDT E 30 E 30 8 12 36 6 8 8 11 15 17 18 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT V 31 V 31 8 12 36 6 10 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT R 32 R 32 8 12 36 6 8 8 12 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT C 33 C 33 8 12 36 3 8 8 10 15 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT S 34 S 34 8 12 36 3 8 8 10 15 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT D 35 D 35 5 12 36 3 5 8 10 15 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT T 36 T 36 5 12 36 3 5 7 10 15 17 18 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT K 37 K 37 5 12 36 3 5 7 10 15 17 18 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT Y 38 Y 38 5 12 36 3 5 7 9 15 17 18 22 23 25 27 30 32 34 35 35 37 38 39 39 LCS_GDT T 39 T 39 5 9 36 3 5 5 6 9 14 15 18 21 24 27 30 32 34 35 35 37 38 39 39 LCS_GDT L 40 L 40 5 9 36 3 5 5 6 9 11 16 18 21 23 26 28 31 34 35 35 37 38 39 39 LCS_GDT C 41 C 41 5 6 35 3 5 5 5 6 6 8 10 11 16 18 23 27 27 28 29 31 33 35 36 LCS_AVERAGE LCS_A: 48.03 ( 23.62 34.86 85.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 14 16 18 21 22 22 23 25 27 30 32 34 35 35 37 38 39 39 GDT PERCENT_AT 19.51 29.27 34.15 39.02 43.90 51.22 53.66 53.66 56.10 60.98 65.85 73.17 78.05 82.93 85.37 85.37 90.24 92.68 95.12 95.12 GDT RMS_LOCAL 0.33 0.63 0.96 1.16 1.43 2.04 2.10 2.10 2.31 2.74 3.72 4.12 4.41 4.60 4.73 4.73 5.16 5.41 5.54 5.54 GDT RMS_ALL_AT 9.74 10.55 9.57 9.66 9.74 9.94 10.22 10.22 9.97 9.51 7.46 7.24 6.47 6.67 6.66 6.66 6.31 6.17 6.16 6.16 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.747 0 0.093 0.646 5.473 20.909 24.848 2.793 LGA Q 2 Q 2 2.666 0 0.228 0.907 6.609 41.818 21.212 6.609 LGA E 3 E 3 1.017 0 0.085 1.119 5.185 65.909 39.798 4.327 LGA T 4 T 4 1.371 0 0.036 0.045 1.786 65.455 59.221 1.786 LGA R 5 R 5 1.285 0 0.042 0.987 6.127 73.636 40.992 6.127 LGA K 6 K 6 0.631 0 0.033 1.158 5.780 81.818 52.323 5.709 LGA K 7 K 7 0.671 0 0.041 0.846 4.405 81.818 54.545 4.405 LGA C 8 C 8 1.290 0 0.039 0.679 3.358 65.455 55.152 3.358 LGA T 9 T 9 1.202 0 0.030 0.939 3.328 65.455 56.623 1.786 LGA E 10 E 10 0.813 0 0.023 0.749 3.152 77.727 60.404 3.152 LGA M 11 M 11 0.947 0 0.064 1.320 7.070 73.636 51.591 7.070 LGA K 12 K 12 2.232 0 0.057 0.795 6.213 38.636 27.475 6.213 LGA K 13 K 13 2.524 0 0.046 0.582 4.067 35.455 25.657 2.714 LGA K 14 K 14 1.268 0 0.077 0.686 1.993 70.000 66.061 1.993 LGA F 15 F 15 1.256 0 0.481 1.514 7.775 45.000 26.446 7.775 LGA K 16 K 16 2.248 0 0.225 1.116 4.182 38.636 34.141 4.182 LGA N 17 N 17 2.523 0 0.012 1.140 4.986 20.455 22.500 2.569 LGA C 18 C 18 5.412 0 0.159 0.259 6.283 1.364 0.909 5.782 LGA E 19 E 19 8.947 0 0.227 0.957 13.795 0.000 0.000 13.795 LGA V 20 V 20 9.209 0 0.127 1.014 11.184 0.000 0.000 6.298 LGA R 21 R 21 14.023 0 0.098 1.077 19.530 0.000 0.000 19.530 LGA C 22 C 22 14.138 0 0.624 0.701 17.800 0.000 0.000 11.751 LGA D 23 D 23 17.566 0 0.068 1.107 19.031 0.000 0.000 18.292 LGA E 24 E 24 22.391 0 0.667 0.740 31.135 0.000 0.000 31.135 LGA S 25 S 25 24.992 0 0.583 0.784 28.693 0.000 0.000 28.693 LGA N 26 N 26 19.634 0 0.606 1.274 21.807 0.000 0.000 21.238 LGA H 27 H 27 15.965 0 0.333 1.126 18.366 0.000 0.000 16.773 LGA C 28 C 28 12.229 0 0.053 0.766 13.999 0.000 0.000 13.894 LGA V 29 V 29 9.254 0 0.068 0.237 10.164 0.000 0.000 8.667 LGA E 30 E 30 7.713 0 0.067 0.635 12.526 0.000 0.000 12.186 LGA V 31 V 31 3.015 0 0.088 0.893 4.523 14.545 23.636 4.286 LGA R 32 R 32 2.932 0 0.252 0.995 10.986 35.909 13.719 10.986 LGA C 33 C 33 2.637 0 0.204 0.923 6.542 38.636 26.061 6.542 LGA S 34 S 34 2.974 0 0.410 0.632 3.511 22.727 25.455 1.850 LGA D 35 D 35 3.574 0 0.082 0.194 6.484 10.000 5.682 6.484 LGA T 36 T 36 5.462 0 0.084 1.219 7.719 2.727 1.558 5.247 LGA K 37 K 37 7.434 0 0.112 1.678 10.441 0.000 0.000 7.758 LGA Y 38 Y 38 9.577 0 0.091 1.399 12.428 0.000 0.000 9.911 LGA T 39 T 39 14.784 0 0.148 0.927 16.190 0.000 0.000 14.993 LGA L 40 L 40 17.978 0 0.609 0.902 20.577 0.000 0.000 17.612 LGA C 41 C 41 22.562 1 0.486 1.113 24.800 0.000 0.000 24.549 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 6.124 5.986 6.989 26.530 19.903 8.381 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 22 2.10 51.829 49.141 1.000 LGA_LOCAL RMSD: 2.099 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.223 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.124 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.226127 * X + -0.052169 * Y + -0.972700 * Z + 4.489096 Y_new = 0.534174 * X + -0.828389 * Y + 0.168611 * Z + 2.130229 Z_new = -0.814570 * X + -0.557719 * Y + -0.159454 * Z + -1.976437 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.170349 0.951987 -1.849271 [DEG: 67.0560 54.5449 -105.9554 ] ZXZ: -1.742434 1.730934 -2.171165 [DEG: -99.8341 99.1752 -124.3986 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS041_5 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 22 2.10 49.141 6.12 REMARK ---------------------------------------------------------- MOLECULE T0955TS041_5 PFRMAT TS TARGET T0955 MODEL 5 PARENT N/A ATOM 8 N SER 1 -3.426 -13.643 1.327 1.00 0.00 N ATOM 10 CA SER 1 -2.031 -14.163 1.237 1.00 0.00 C ATOM 4 C SER 1 -1.080 -13.263 2.040 1.00 0.00 C ATOM 5 O SER 1 -1.371 -12.078 2.243 1.00 0.00 O ATOM 1 CB SER 1 -1.591 -14.234 -0.232 1.00 0.00 C ATOM 2 OG SER 1 -0.342 -14.892 -0.376 1.00 0.00 O ATOM 11 N GLN 2 0.045 -13.840 2.490 1.00 0.00 N ATOM 13 CA GLN 2 1.091 -13.156 3.283 1.00 0.00 C ATOM 21 C GLN 2 1.889 -12.089 2.511 1.00 0.00 C ATOM 22 O GLN 2 2.211 -11.034 3.070 1.00 0.00 O ATOM 14 CB GLN 2 2.060 -14.178 3.894 1.00 0.00 C ATOM 15 CG GLN 2 1.459 -15.051 4.992 1.00 0.00 C ATOM 16 CD GLN 2 2.457 -16.041 5.561 1.00 0.00 C ATOM 17 OE1 GLN 2 3.154 -15.747 6.533 1.00 0.00 O ATOM 18 NE2 GLN 2 2.531 -17.223 4.959 1.00 0.00 N ATOM 23 N GLU 3 2.164 -12.360 1.226 1.00 0.00 N ATOM 25 CA GLU 3 2.924 -11.464 0.326 1.00 0.00 C ATOM 31 C GLU 3 2.201 -10.138 0.030 1.00 0.00 C ATOM 32 O GLU 3 2.817 -9.069 0.122 1.00 0.00 O ATOM 26 CB GLU 3 3.268 -12.179 -0.990 1.00 0.00 C ATOM 27 CG GLU 3 4.283 -13.311 -0.857 1.00 0.00 C ATOM 28 CD GLU 3 4.591 -13.982 -2.182 1.00 0.00 C ATOM 29 OE1 GLU 3 5.533 -13.536 -2.872 1.00 0.00 O ATOM 30 OE2 GLU 3 3.893 -14.956 -2.535 1.00 0.00 O ATOM 33 N THR 4 0.896 -10.220 -0.277 1.00 0.00 N ATOM 35 CA THR 4 0.032 -9.055 -0.577 1.00 0.00 C ATOM 40 C THR 4 -0.204 -8.166 0.669 1.00 0.00 C ATOM 41 O THR 4 -0.213 -6.931 0.565 1.00 0.00 O ATOM 36 CB THR 4 -1.325 -9.488 -1.273 1.00 0.00 C ATOM 37 OG1 THR 4 -2.159 -8.340 -1.481 1.00 0.00 O ATOM 39 CG2 THR 4 -2.092 -10.554 -0.460 1.00 0.00 C ATOM 42 N ARG 5 -0.340 -8.823 1.832 1.00 0.00 N ATOM 44 CA ARG 5 -0.560 -8.179 3.141 1.00 0.00 C ATOM 57 C ARG 5 0.698 -7.395 3.576 1.00 0.00 C ATOM 58 O ARG 5 0.585 -6.256 4.044 1.00 0.00 O ATOM 45 CB ARG 5 -0.934 -9.236 4.195 1.00 0.00 C ATOM 46 CG ARG 5 -2.005 -8.799 5.209 1.00 0.00 C ATOM 47 CD ARG 5 -2.325 -9.896 6.222 1.00 0.00 C ATOM 48 NE ARG 5 -3.035 -11.033 5.625 1.00 0.00 N ATOM 50 CZ ARG 5 -3.421 -12.128 6.282 1.00 0.00 C ATOM 51 NH1 ARG 5 -4.057 -13.091 5.630 1.00 0.00 N ATOM 54 NH2 ARG 5 -3.177 -12.274 7.581 1.00 0.00 N ATOM 59 N LYS 6 1.877 -8.000 3.363 1.00 0.00 N ATOM 61 CA LYS 6 3.188 -7.408 3.703 1.00 0.00 C ATOM 70 C LYS 6 3.560 -6.192 2.841 1.00 0.00 C ATOM 71 O LYS 6 3.967 -5.161 3.389 1.00 0.00 O ATOM 62 CB LYS 6 4.301 -8.464 3.637 1.00 0.00 C ATOM 63 CG LYS 6 4.336 -9.419 4.823 1.00 0.00 C ATOM 64 CD LYS 6 5.468 -10.432 4.683 1.00 0.00 C ATOM 65 CE LYS 6 5.525 -11.400 5.863 1.00 0.00 C ATOM 66 NZ LYS 6 5.943 -10.755 7.145 1.00 0.00 N ATOM 72 N LYS 7 3.379 -6.299 1.514 1.00 0.00 N ATOM 74 CA LYS 7 3.687 -5.198 0.580 1.00 0.00 C ATOM 83 C LYS 7 2.746 -3.985 0.717 1.00 0.00 C ATOM 84 O LYS 7 3.207 -2.843 0.640 1.00 0.00 O ATOM 75 CB LYS 7 3.813 -5.673 -0.889 1.00 0.00 C ATOM 76 CG LYS 7 2.614 -6.389 -1.530 1.00 0.00 C ATOM 77 CD LYS 7 2.845 -6.579 -3.026 1.00 0.00 C ATOM 78 CE LYS 7 1.741 -7.395 -3.687 1.00 0.00 C ATOM 79 NZ LYS 7 1.833 -8.851 -3.379 1.00 0.00 N ATOM 85 N CYS 8 1.453 -4.249 0.964 1.00 0.00 N ATOM 87 CA CYS 8 0.424 -3.203 1.144 1.00 0.00 C ATOM 90 C CYS 8 0.641 -2.409 2.447 1.00 0.00 C ATOM 91 O CYS 8 0.536 -1.178 2.444 1.00 0.00 O ATOM 88 CB CYS 8 -0.993 -3.794 1.091 1.00 0.00 C ATOM 89 SG CYS 8 -1.467 -4.858 2.475 1.00 0.00 S ATOM 92 N THR 9 0.990 -3.123 3.531 1.00 0.00 N ATOM 94 CA THR 9 1.260 -2.533 4.861 1.00 0.00 C ATOM 99 C THR 9 2.547 -1.683 4.858 1.00 0.00 C ATOM 100 O THR 9 2.589 -0.615 5.484 1.00 0.00 O ATOM 95 CB THR 9 1.347 -3.616 5.979 1.00 0.00 C ATOM 96 OG1 THR 9 2.223 -4.674 5.568 1.00 0.00 O ATOM 98 CG2 THR 9 -0.033 -4.176 6.299 1.00 0.00 C ATOM 101 N GLU 10 3.563 -2.144 4.108 1.00 0.00 N ATOM 103 CA GLU 10 4.864 -1.462 3.964 1.00 0.00 C ATOM 109 C GLU 10 4.746 -0.137 3.196 1.00 0.00 C ATOM 110 O GLU 10 5.282 0.879 3.648 1.00 0.00 O ATOM 104 CB GLU 10 5.897 -2.376 3.290 1.00 0.00 C ATOM 105 CG GLU 10 6.502 -3.429 4.213 1.00 0.00 C ATOM 106 CD GLU 10 7.518 -4.309 3.511 1.00 0.00 C ATOM 107 OE1 GLU 10 7.119 -5.357 2.959 1.00 0.00 O ATOM 108 OE2 GLU 10 8.717 -3.957 3.513 1.00 0.00 O ATOM 111 N MET 11 4.012 -0.144 2.070 1.00 0.00 N ATOM 113 CA MET 11 3.796 1.063 1.249 1.00 0.00 C ATOM 117 C MET 11 2.918 2.108 1.968 1.00 0.00 C ATOM 118 O MET 11 3.207 3.304 1.896 1.00 0.00 O ATOM 119 CB MET 11 3.268 0.733 -0.170 1.00 0.00 C ATOM 114 CG MET 11 1.981 -0.104 -0.302 1.00 0.00 C ATOM 115 SD MET 11 0.454 0.734 0.183 1.00 0.00 S ATOM 116 CE MET 11 -0.339 0.945 -1.399 1.00 0.00 C ATOM 120 N LYS 12 1.909 1.627 2.714 1.00 0.00 N ATOM 122 CA LYS 12 0.975 2.470 3.491 1.00 0.00 C ATOM 131 C LYS 12 1.698 3.235 4.610 1.00 0.00 C ATOM 132 O LYS 12 1.446 4.428 4.807 1.00 0.00 O ATOM 123 CB LYS 12 -0.170 1.633 4.080 1.00 0.00 C ATOM 124 CG LYS 12 -1.299 1.338 3.105 1.00 0.00 C ATOM 125 CD LYS 12 -2.394 0.504 3.762 1.00 0.00 C ATOM 126 CE LYS 12 -3.539 0.195 2.800 1.00 0.00 C ATOM 127 NZ LYS 12 -4.348 1.395 2.429 1.00 0.00 N ATOM 133 N LYS 13 2.585 2.532 5.331 1.00 0.00 N ATOM 135 CA LYS 13 3.406 3.095 6.421 1.00 0.00 C ATOM 144 C LYS 13 4.488 4.055 5.889 1.00 0.00 C ATOM 145 O LYS 13 4.767 5.083 6.515 1.00 0.00 O ATOM 136 CB LYS 13 4.058 1.978 7.248 1.00 0.00 C ATOM 137 CG LYS 13 3.092 1.190 8.125 1.00 0.00 C ATOM 138 CD LYS 13 3.815 0.104 8.907 1.00 0.00 C ATOM 139 CE LYS 13 2.850 -0.681 9.781 1.00 0.00 C ATOM 140 NZ LYS 13 3.544 -1.749 10.553 1.00 0.00 N ATOM 146 N LYS 14 5.078 3.698 4.736 1.00 0.00 N ATOM 148 CA LYS 14 6.143 4.471 4.063 1.00 0.00 C ATOM 157 C LYS 14 5.794 5.824 3.413 1.00 0.00 C ATOM 158 O LYS 14 6.523 6.797 3.639 1.00 0.00 O ATOM 149 CB LYS 14 6.896 3.596 3.056 1.00 0.00 C ATOM 150 CG LYS 14 7.918 2.654 3.682 1.00 0.00 C ATOM 151 CD LYS 14 8.625 1.818 2.621 1.00 0.00 C ATOM 152 CE LYS 14 9.654 0.867 3.227 1.00 0.00 C ATOM 153 NZ LYS 14 10.842 1.564 3.808 1.00 0.00 N ATOM 159 N PHE 15 4.705 5.897 2.626 1.00 0.00 N ATOM 161 CA PHE 15 4.309 7.157 1.958 1.00 0.00 C ATOM 169 C PHE 15 3.786 8.312 2.831 1.00 0.00 C ATOM 170 O PHE 15 4.200 9.456 2.636 1.00 0.00 O ATOM 162 CB PHE 15 3.412 6.945 0.697 1.00 0.00 C ATOM 163 CG PHE 15 2.127 6.121 0.896 1.00 0.00 C ATOM 164 CD1 PHE 15 1.155 6.441 1.880 1.00 0.00 C ATOM 165 CD2 PHE 15 1.829 5.088 -0.013 1.00 0.00 C ATOM 166 CE1 PHE 15 -0.087 5.748 1.946 1.00 0.00 C ATOM 167 CE2 PHE 15 0.591 4.387 0.039 1.00 0.00 C ATOM 168 CZ PHE 15 -0.369 4.721 1.020 1.00 0.00 C ATOM 171 N LYS 16 2.924 7.987 3.811 1.00 0.00 N ATOM 173 CA LYS 16 2.265 8.917 4.776 1.00 0.00 C ATOM 182 C LYS 16 1.763 10.304 4.289 1.00 0.00 C ATOM 183 O LYS 16 0.550 10.550 4.292 1.00 0.00 O ATOM 174 CB LYS 16 3.043 9.025 6.121 1.00 0.00 C ATOM 175 CG LYS 16 4.524 9.450 6.062 1.00 0.00 C ATOM 176 CD LYS 16 5.139 9.506 7.452 1.00 0.00 C ATOM 177 CE LYS 16 6.599 9.922 7.394 1.00 0.00 C ATOM 178 NZ LYS 16 7.215 9.981 8.748 1.00 0.00 N ATOM 184 N ASN 17 2.695 11.180 3.883 1.00 0.00 N ATOM 186 CA ASN 17 2.397 12.540 3.392 1.00 0.00 C ATOM 193 C ASN 17 2.858 12.677 1.926 1.00 0.00 C ATOM 194 O ASN 17 2.319 13.504 1.181 1.00 0.00 O ATOM 187 CB ASN 17 3.105 13.591 4.277 1.00 0.00 C ATOM 188 CG ASN 17 2.382 14.940 4.301 1.00 0.00 C ATOM 189 OD1 ASN 17 1.524 15.183 5.150 1.00 0.00 O ATOM 190 ND2 ASN 17 2.743 15.823 3.373 1.00 0.00 N ATOM 195 N CYS 18 3.859 11.875 1.539 1.00 0.00 N ATOM 197 CA CYS 18 4.433 11.860 0.182 1.00 0.00 C ATOM 200 C CYS 18 4.045 10.584 -0.597 1.00 0.00 C ATOM 201 O CYS 18 3.060 9.931 -0.241 1.00 0.00 O ATOM 198 CB CYS 18 5.958 12.028 0.261 1.00 0.00 C ATOM 199 SG CYS 18 6.502 13.568 1.038 1.00 0.00 S ATOM 202 N GLU 19 4.790 10.273 -1.670 1.00 0.00 N ATOM 204 CA GLU 19 4.568 9.102 -2.538 1.00 0.00 C ATOM 210 C GLU 19 5.768 8.132 -2.451 1.00 0.00 C ATOM 211 O GLU 19 6.925 8.566 -2.518 1.00 0.00 O ATOM 205 CB GLU 19 4.336 9.580 -3.985 1.00 0.00 C ATOM 206 CG GLU 19 3.977 8.540 -5.055 1.00 0.00 C ATOM 207 CD GLU 19 3.753 9.171 -6.417 1.00 0.00 C ATOM 208 OE1 GLU 19 4.750 9.461 -7.114 1.00 0.00 O ATOM 209 OE2 GLU 19 2.579 9.373 -6.794 1.00 0.00 O ATOM 212 N VAL 20 5.468 6.830 -2.318 1.00 0.00 N ATOM 214 CA VAL 20 6.481 5.764 -2.217 1.00 0.00 C ATOM 218 C VAL 20 6.471 4.774 -3.406 1.00 0.00 C ATOM 219 O VAL 20 5.411 4.465 -3.967 1.00 0.00 O ATOM 215 CB VAL 20 6.420 5.018 -0.801 1.00 0.00 C ATOM 216 CG1 VAL 20 5.215 4.069 -0.690 1.00 0.00 C ATOM 217 CG2 VAL 20 7.746 4.305 -0.486 1.00 0.00 C ATOM 220 N ARG 21 7.680 4.312 -3.759 1.00 0.00 N ATOM 222 CA ARG 21 7.966 3.339 -4.826 1.00 0.00 C ATOM 235 C ARG 21 8.488 2.072 -4.107 1.00 0.00 C ATOM 236 O ARG 21 9.174 2.188 -3.083 1.00 0.00 O ATOM 223 CB ARG 21 9.027 3.928 -5.802 1.00 0.00 C ATOM 224 CG ARG 21 9.683 3.010 -6.898 1.00 0.00 C ATOM 225 CD ARG 21 8.793 2.661 -8.114 1.00 0.00 C ATOM 226 NE ARG 21 7.724 1.716 -7.773 1.00 0.00 N ATOM 228 CZ ARG 21 7.601 0.478 -8.260 1.00 0.00 C ATOM 229 NH1 ARG 21 6.585 -0.279 -7.871 1.00 0.00 N ATOM 232 NH2 ARG 21 8.480 -0.012 -9.128 1.00 0.00 N ATOM 237 N CYS 22 8.152 0.887 -4.640 1.00 0.00 N ATOM 239 CA CYS 22 8.555 -0.410 -4.061 1.00 0.00 C ATOM 242 C CYS 22 9.601 -1.199 -4.870 1.00 0.00 C ATOM 243 O CYS 22 10.547 -1.740 -4.285 1.00 0.00 O ATOM 240 CB CYS 22 7.321 -1.291 -3.818 1.00 0.00 C ATOM 241 SG CYS 22 6.106 -0.578 -2.685 1.00 0.00 S ATOM 244 N ASP 23 9.419 -1.265 -6.198 1.00 0.00 N ATOM 246 CA ASP 23 10.317 -1.993 -7.118 1.00 0.00 C ATOM 251 C ASP 23 11.191 -1.030 -7.951 1.00 0.00 C ATOM 252 O ASP 23 10.881 0.163 -8.046 1.00 0.00 O ATOM 247 CB ASP 23 9.484 -2.909 -8.043 1.00 0.00 C ATOM 248 CG ASP 23 10.247 -4.156 -8.500 1.00 0.00 C ATOM 249 OD1 ASP 23 10.167 -5.195 -7.808 1.00 0.00 O ATOM 250 OD2 ASP 23 10.909 -4.099 -9.559 1.00 0.00 O ATOM 253 N GLU 24 12.286 -1.563 -8.515 1.00 0.00 N ATOM 255 CA GLU 24 13.242 -0.817 -9.356 1.00 0.00 C ATOM 261 C GLU 24 13.341 -1.528 -10.720 1.00 0.00 C ATOM 262 O GLU 24 13.194 -2.754 -10.789 1.00 0.00 O ATOM 256 CB GLU 24 14.626 -0.764 -8.679 1.00 0.00 C ATOM 257 CG GLU 24 15.419 0.529 -8.913 1.00 0.00 C ATOM 258 CD GLU 24 16.770 0.519 -8.221 1.00 0.00 C ATOM 259 OE1 GLU 24 16.846 0.958 -7.054 1.00 0.00 O ATOM 260 OE2 GLU 24 17.756 0.074 -8.845 1.00 0.00 O ATOM 263 N SER 25 13.598 -0.745 -11.784 1.00 0.00 N ATOM 265 CA SER 25 13.742 -1.186 -13.202 1.00 0.00 C ATOM 269 C SER 25 12.547 -1.962 -13.802 1.00 0.00 C ATOM 270 O SER 25 12.000 -2.864 -13.156 1.00 0.00 O ATOM 266 CB SER 25 15.060 -1.961 -13.425 1.00 0.00 C ATOM 267 OG SER 25 15.323 -2.179 -14.803 1.00 0.00 O ATOM 271 N ASN 26 12.176 -1.605 -15.047 1.00 0.00 N ATOM 273 CA ASN 26 11.061 -2.184 -15.849 1.00 0.00 C ATOM 280 C ASN 26 9.690 -2.197 -15.126 1.00 0.00 C ATOM 281 O ASN 26 9.527 -2.879 -14.104 1.00 0.00 O ATOM 274 CB ASN 26 11.427 -3.589 -16.399 1.00 0.00 C ATOM 275 CG ASN 26 10.788 -3.887 -17.757 1.00 0.00 C ATOM 276 OD1 ASN 26 11.373 -3.612 -18.806 1.00 0.00 O ATOM 277 ND2 ASN 26 9.590 -4.466 -17.736 1.00 0.00 N ATOM 282 N HIS 27 8.727 -1.429 -15.672 1.00 0.00 N ATOM 284 CA HIS 27 7.336 -1.255 -15.168 1.00 0.00 C ATOM 292 C HIS 27 7.273 -0.908 -13.655 1.00 0.00 C ATOM 293 O HIS 27 7.374 -1.800 -12.798 1.00 0.00 O ATOM 294 CB HIS 27 6.443 -2.479 -15.528 1.00 0.00 C ATOM 285 CG HIS 27 4.981 -2.161 -15.680 1.00 0.00 C ATOM 287 ND1 HIS 27 4.488 -1.389 -16.712 1.00 0.00 N ATOM 286 CD2 HIS 27 3.906 -2.527 -14.941 1.00 0.00 C ATOM 289 CE1 HIS 27 3.175 -1.293 -16.601 1.00 0.00 C ATOM 290 NE2 HIS 27 2.797 -1.974 -15.535 1.00 0.00 N ATOM 295 N CYS 28 7.160 0.394 -13.357 1.00 0.00 N ATOM 297 CA CYS 28 7.105 0.918 -11.982 1.00 0.00 C ATOM 300 C CYS 28 5.746 1.519 -11.592 1.00 0.00 C ATOM 301 O CYS 28 5.135 2.249 -12.384 1.00 0.00 O ATOM 298 CB CYS 28 8.219 1.954 -11.763 1.00 0.00 C ATOM 299 SG CYS 28 8.209 3.337 -12.932 1.00 0.00 S ATOM 302 N VAL 29 5.280 1.178 -10.379 1.00 0.00 N ATOM 304 CA VAL 29 4.004 1.663 -9.810 1.00 0.00 C ATOM 308 C VAL 29 4.343 2.500 -8.555 1.00 0.00 C ATOM 309 O VAL 29 5.066 2.035 -7.662 1.00 0.00 O ATOM 305 CB VAL 29 3.010 0.475 -9.446 1.00 0.00 C ATOM 306 CG1 VAL 29 1.571 0.992 -9.263 1.00 0.00 C ATOM 307 CG2 VAL 29 3.032 -0.609 -10.525 1.00 0.00 C ATOM 310 N GLU 30 3.825 3.734 -8.517 1.00 0.00 N ATOM 312 CA GLU 30 4.032 4.685 -7.411 1.00 0.00 C ATOM 318 C GLU 30 2.721 4.932 -6.639 1.00 0.00 C ATOM 319 O GLU 30 1.685 5.209 -7.257 1.00 0.00 O ATOM 313 CB GLU 30 4.654 6.009 -7.928 1.00 0.00 C ATOM 314 CG GLU 30 4.119 6.546 -9.282 1.00 0.00 C ATOM 315 CD GLU 30 4.846 7.791 -9.763 1.00 0.00 C ATOM 316 OE1 GLU 30 5.988 7.670 -10.257 1.00 0.00 O ATOM 317 OE2 GLU 30 4.266 8.893 -9.662 1.00 0.00 O ATOM 320 N VAL 31 2.775 4.803 -5.304 1.00 0.00 N ATOM 322 CA VAL 31 1.603 5.004 -4.429 1.00 0.00 C ATOM 326 C VAL 31 1.707 6.264 -3.555 1.00 0.00 C ATOM 327 O VAL 31 2.698 6.459 -2.842 1.00 0.00 O ATOM 323 CB VAL 31 1.251 3.717 -3.579 1.00 0.00 C ATOM 324 CG1 VAL 31 0.556 2.694 -4.465 1.00 0.00 C ATOM 325 CG2 VAL 31 2.508 3.084 -2.948 1.00 0.00 C ATOM 328 N ARG 32 0.663 7.100 -3.632 1.00 0.00 N ATOM 330 CA ARG 32 0.546 8.387 -2.919 1.00 0.00 C ATOM 343 C ARG 32 -0.695 8.470 -2.013 1.00 0.00 C ATOM 344 O ARG 32 -1.720 7.851 -2.319 1.00 0.00 O ATOM 331 CB ARG 32 0.567 9.585 -3.905 1.00 0.00 C ATOM 332 CG ARG 32 -0.330 9.484 -5.159 1.00 0.00 C ATOM 333 CD ARG 32 -0.251 10.747 -6.000 1.00 0.00 C ATOM 334 NE ARG 32 -1.096 10.668 -7.195 1.00 0.00 N ATOM 336 CZ ARG 32 -1.228 11.632 -8.107 1.00 0.00 C ATOM 337 NH1 ARG 32 -2.026 11.441 -9.148 1.00 0.00 N ATOM 340 NH2 ARG 32 -0.576 12.785 -7.992 1.00 0.00 N ATOM 345 N CYS 33 -0.577 9.214 -0.903 1.00 0.00 N ATOM 347 CA CYS 33 -1.666 9.427 0.071 1.00 0.00 C ATOM 350 C CYS 33 -2.180 10.875 -0.038 1.00 0.00 C ATOM 351 O CYS 33 -3.373 11.128 0.175 1.00 0.00 O ATOM 348 CB CYS 33 -1.171 9.170 1.499 1.00 0.00 C ATOM 349 SG CYS 33 -2.457 9.182 2.776 1.00 0.00 S ATOM 352 N SER 34 -1.270 11.802 -0.374 1.00 0.00 N ATOM 354 CA SER 34 -1.566 13.239 -0.530 1.00 0.00 C ATOM 358 C SER 34 -1.360 13.666 -2.003 1.00 0.00 C ATOM 359 O SER 34 -1.400 12.811 -2.896 1.00 0.00 O ATOM 355 CB SER 34 -0.687 14.064 0.429 1.00 0.00 C ATOM 356 OG SER 34 -1.078 15.427 0.459 1.00 0.00 O ATOM 360 N ASP 35 -1.143 14.969 -2.242 1.00 0.00 N ATOM 362 CA ASP 35 -0.943 15.552 -3.583 1.00 0.00 C ATOM 367 C ASP 35 0.498 15.536 -4.149 1.00 0.00 C ATOM 368 O ASP 35 0.681 15.620 -5.372 1.00 0.00 O ATOM 363 CB ASP 35 -1.546 16.978 -3.646 1.00 0.00 C ATOM 364 CG ASP 35 -1.103 17.880 -2.485 1.00 0.00 C ATOM 365 OD1 ASP 35 -0.073 18.574 -2.624 1.00 0.00 O ATOM 366 OD2 ASP 35 -1.796 17.900 -1.444 1.00 0.00 O ATOM 369 N THR 36 1.495 15.395 -3.262 1.00 0.00 N ATOM 371 CA THR 36 2.930 15.366 -3.629 1.00 0.00 C ATOM 376 C THR 36 3.439 13.977 -4.101 1.00 0.00 C ATOM 377 O THR 36 3.021 12.946 -3.558 1.00 0.00 O ATOM 372 CB THR 36 3.840 15.980 -2.484 1.00 0.00 C ATOM 373 OG1 THR 36 5.226 15.825 -2.816 1.00 0.00 O ATOM 375 CG2 THR 36 3.553 15.354 -1.104 1.00 0.00 C ATOM 378 N LYS 37 4.321 13.983 -5.111 1.00 0.00 N ATOM 380 CA LYS 37 4.908 12.768 -5.709 1.00 0.00 C ATOM 389 C LYS 37 6.363 12.502 -5.279 1.00 0.00 C ATOM 390 O LYS 37 7.114 13.447 -5.010 1.00 0.00 O ATOM 381 CB LYS 37 4.832 12.830 -7.244 1.00 0.00 C ATOM 382 CG LYS 37 3.423 12.724 -7.818 1.00 0.00 C ATOM 383 CD LYS 37 3.438 12.802 -9.341 1.00 0.00 C ATOM 384 CE LYS 37 2.037 12.695 -9.938 1.00 0.00 C ATOM 385 NZ LYS 37 1.422 11.342 -9.781 1.00 0.00 N ATOM 391 N TYR 38 6.738 11.209 -5.226 1.00 0.00 N ATOM 393 CA TYR 38 8.081 10.677 -4.858 1.00 0.00 C ATOM 403 C TYR 38 8.696 11.107 -3.503 1.00 0.00 C ATOM 404 O TYR 38 8.504 12.247 -3.064 1.00 0.00 O ATOM 394 CB TYR 38 9.103 10.904 -6.015 1.00 0.00 C ATOM 395 CG TYR 38 10.178 9.826 -6.230 1.00 0.00 C ATOM 396 CD1 TYR 38 11.455 9.940 -5.629 1.00 0.00 C ATOM 398 CD2 TYR 38 9.938 8.705 -7.065 1.00 0.00 C ATOM 397 CE1 TYR 38 12.467 8.964 -5.853 1.00 0.00 C ATOM 399 CE2 TYR 38 10.943 7.725 -7.293 1.00 0.00 C ATOM 400 CZ TYR 38 12.200 7.864 -6.684 1.00 0.00 C ATOM 401 OH TYR 38 13.174 6.916 -6.904 1.00 0.00 O ATOM 405 N THR 39 9.431 10.177 -2.869 1.00 0.00 N ATOM 407 CA THR 39 10.113 10.384 -1.572 1.00 0.00 C ATOM 412 C THR 39 11.641 10.489 -1.759 1.00 0.00 C ATOM 413 O THR 39 12.215 9.800 -2.615 1.00 0.00 O ATOM 408 CB THR 39 9.822 9.221 -0.568 1.00 0.00 C ATOM 409 OG1 THR 39 9.916 7.961 -1.244 1.00 0.00 O ATOM 411 CG2 THR 39 8.450 9.369 0.056 1.00 0.00 C ATOM 414 N LEU 40 12.271 11.378 -0.976 1.00 0.00 N ATOM 416 CA LEU 40 13.726 11.624 -1.005 1.00 0.00 C ATOM 421 C LEU 40 14.369 11.094 0.293 1.00 0.00 C ATOM 422 O LEU 40 15.519 10.638 0.272 1.00 0.00 O ATOM 417 CB LEU 40 14.005 13.137 -1.170 1.00 0.00 C ATOM 418 CG LEU 40 15.231 13.706 -1.922 1.00 0.00 C ATOM 419 CD1 LEU 40 14.811 14.954 -2.681 1.00 0.00 C ATOM 420 CD2 LEU 40 16.405 14.019 -0.977 1.00 0.00 C ATOM 423 N CYS 41 13.614 11.164 1.399 1.00 0.00 N ATOM 425 CA CYS 41 14.052 10.709 2.731 1.00 0.00 C ATOM 428 C CYS 41 13.378 9.397 3.145 1.00 0.00 C ATOM 429 O CYS 41 12.208 9.189 2.759 1.00 0.00 O ATOM 426 CB CYS 41 13.784 11.797 3.783 1.00 0.00 C ATOM 427 SG CYS 41 12.069 12.375 3.862 1.00 0.00 S TER END