####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS041_4 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_4.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 1 - 31 4.95 9.45 LCS_AVERAGE: 70.08 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 1 - 18 1.83 12.42 LONGEST_CONTINUOUS_SEGMENT: 18 2 - 19 1.92 11.73 LCS_AVERAGE: 32.60 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.94 14.02 LONGEST_CONTINUOUS_SEGMENT: 15 3 - 17 0.99 13.77 LCS_AVERAGE: 23.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 18 31 3 5 6 6 14 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT Q 2 Q 2 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT E 3 E 3 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT T 4 T 4 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT R 5 R 5 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 6 K 6 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 7 K 7 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT C 8 C 8 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT T 9 T 9 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT E 10 E 10 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT M 11 M 11 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 12 K 12 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 13 K 13 15 18 31 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 14 K 14 15 18 31 6 10 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT F 15 F 15 15 18 31 3 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT K 16 K 16 15 18 31 3 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT N 17 N 17 15 18 31 3 7 14 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT C 18 C 18 7 18 31 3 6 7 9 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT E 19 E 19 7 18 31 4 6 7 10 16 19 21 22 22 23 25 28 29 31 34 37 37 37 37 38 LCS_GDT V 20 V 20 7 9 31 4 6 7 8 10 18 21 22 22 23 24 28 29 31 34 37 37 37 37 38 LCS_GDT R 21 R 21 7 9 31 4 6 7 8 10 17 21 22 22 23 24 27 28 31 34 37 37 37 37 38 LCS_GDT C 22 C 22 7 9 31 4 6 7 8 10 13 15 22 22 23 23 25 26 31 34 37 37 37 37 38 LCS_GDT D 23 D 23 7 9 31 4 6 7 8 10 13 15 18 22 23 23 25 26 29 34 37 37 37 37 38 LCS_GDT E 24 E 24 4 9 31 3 5 7 8 10 13 15 17 18 19 23 25 28 31 34 37 37 37 37 38 LCS_GDT S 25 S 25 4 10 31 3 3 4 7 8 9 12 15 16 21 24 27 29 31 34 37 37 37 37 38 LCS_GDT N 26 N 26 4 10 31 3 3 4 8 10 13 15 17 18 19 24 28 30 31 34 37 37 37 37 38 LCS_GDT H 27 H 27 8 11 31 6 7 8 9 10 12 14 16 17 19 22 26 30 31 34 37 37 37 37 38 LCS_GDT C 28 C 28 8 11 31 6 7 8 9 10 13 15 17 18 20 24 28 30 31 34 37 37 37 37 38 LCS_GDT V 29 V 29 8 11 31 6 7 8 9 10 12 14 16 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT E 30 E 30 8 11 31 6 7 8 9 10 13 15 17 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT V 31 V 31 8 11 31 6 7 8 9 10 13 15 17 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT R 32 R 32 8 11 27 6 7 8 9 10 13 15 17 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT C 33 C 33 8 11 25 4 7 8 9 10 13 15 17 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT S 34 S 34 8 11 24 3 6 8 8 10 12 15 17 20 23 25 28 30 31 34 37 37 37 37 38 LCS_GDT D 35 D 35 4 11 24 3 5 7 9 10 12 14 17 18 23 24 26 30 31 34 37 37 37 37 38 LCS_GDT T 36 T 36 4 11 24 3 4 5 8 10 12 15 17 18 23 24 26 30 30 34 37 37 37 37 38 LCS_GDT K 37 K 37 5 11 24 4 5 6 9 10 12 15 17 18 23 24 26 30 30 34 37 37 37 37 38 LCS_GDT Y 38 Y 38 5 5 24 4 5 6 6 6 8 9 11 15 16 19 20 22 23 26 30 31 33 37 38 LCS_GDT T 39 T 39 5 5 23 4 5 6 6 6 8 9 10 11 12 13 15 17 18 19 19 23 23 25 27 LCS_GDT L 40 L 40 5 5 11 4 5 6 6 6 8 9 10 11 12 13 14 15 18 19 19 19 20 21 22 LCS_GDT C 41 C 41 5 5 11 3 5 6 6 6 8 9 10 11 12 13 14 15 18 19 19 19 20 21 22 LCS_AVERAGE LCS_A: 42.04 ( 23.44 32.60 70.08 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 11 15 16 16 19 21 22 22 23 25 28 30 31 34 37 37 37 37 38 GDT PERCENT_AT 14.63 26.83 36.59 39.02 39.02 46.34 51.22 53.66 53.66 56.10 60.98 68.29 73.17 75.61 82.93 90.24 90.24 90.24 90.24 92.68 GDT RMS_LOCAL 0.26 0.58 0.94 1.03 1.03 2.05 2.31 2.49 2.49 2.75 3.84 4.26 4.54 4.78 5.12 5.61 5.61 5.61 5.61 5.87 GDT RMS_ALL_AT 13.69 14.10 14.02 13.66 13.66 11.59 11.13 11.11 11.11 10.98 8.99 8.85 8.49 8.55 8.96 8.42 8.42 8.42 8.42 8.31 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.834 0 0.646 0.689 4.175 27.273 20.000 4.149 LGA Q 2 Q 2 1.164 0 0.234 0.918 4.718 69.545 46.061 4.718 LGA E 3 E 3 1.675 0 0.074 1.115 6.380 54.545 28.687 6.269 LGA T 4 T 4 2.180 0 0.031 1.154 4.704 47.727 32.987 3.588 LGA R 5 R 5 1.383 0 0.049 0.909 3.758 65.909 48.595 3.429 LGA K 6 K 6 0.418 0 0.032 1.320 8.625 86.364 47.677 8.625 LGA K 7 K 7 2.161 0 0.043 0.844 3.490 41.364 32.121 3.490 LGA C 8 C 8 2.673 0 0.045 0.686 3.875 35.455 28.485 3.875 LGA T 9 T 9 1.555 0 0.015 0.088 3.221 62.273 47.532 2.590 LGA E 10 E 10 1.237 0 0.027 0.984 6.627 70.455 36.162 6.627 LGA M 11 M 11 2.567 0 0.086 1.239 3.755 35.909 39.091 2.191 LGA K 12 K 12 2.622 0 0.034 0.815 10.356 38.636 18.586 10.356 LGA K 13 K 13 2.077 0 0.050 0.332 7.111 51.364 25.455 7.111 LGA K 14 K 14 2.434 0 0.071 0.633 5.518 40.000 21.818 4.049 LGA F 15 F 15 3.214 0 0.437 1.447 5.483 16.818 30.248 3.149 LGA K 16 K 16 2.296 0 0.530 1.039 4.717 29.545 30.505 4.375 LGA N 17 N 17 2.297 0 0.263 0.874 6.869 63.182 32.955 6.869 LGA C 18 C 18 1.932 0 0.035 0.789 6.618 61.818 43.030 6.618 LGA E 19 E 19 2.480 0 0.221 0.637 6.831 33.182 16.566 6.831 LGA V 20 V 20 3.267 0 0.116 0.230 4.800 22.727 16.364 4.800 LGA R 21 R 21 3.656 0 0.087 1.079 9.092 7.273 3.140 7.819 LGA C 22 C 22 4.829 0 0.063 0.204 5.179 2.273 3.333 4.349 LGA D 23 D 23 6.390 0 0.068 0.996 7.856 0.000 0.682 4.767 LGA E 24 E 24 9.771 0 0.632 0.961 11.829 0.000 0.000 5.734 LGA S 25 S 25 12.915 0 0.271 0.810 16.881 0.000 0.000 12.981 LGA N 26 N 26 16.365 0 0.112 0.867 19.010 0.000 0.000 17.067 LGA H 27 H 27 14.850 0 0.406 1.070 16.890 0.000 0.000 10.555 LGA C 28 C 28 14.379 0 0.068 0.070 18.200 0.000 0.000 18.200 LGA V 29 V 29 10.398 0 0.094 0.259 11.846 0.000 0.000 8.294 LGA E 30 E 30 11.096 0 0.054 0.789 15.824 0.000 0.000 14.957 LGA V 31 V 31 8.783 0 0.037 0.258 10.302 0.000 0.000 7.597 LGA R 32 R 32 10.957 0 0.173 1.245 18.757 0.000 0.000 18.757 LGA C 33 C 33 8.541 0 0.188 0.203 9.473 0.000 0.000 7.346 LGA S 34 S 34 10.599 0 0.479 0.701 15.109 0.000 0.000 8.183 LGA D 35 D 35 16.927 0 0.116 1.221 20.506 0.000 0.000 15.775 LGA T 36 T 36 18.404 0 0.630 1.414 19.631 0.000 0.000 19.631 LGA K 37 K 37 17.862 0 0.631 1.486 21.271 0.000 0.000 17.900 LGA Y 38 Y 38 18.952 0 0.038 1.299 19.707 0.000 0.000 13.277 LGA T 39 T 39 22.807 0 0.158 0.346 26.163 0.000 0.000 24.145 LGA L 40 L 40 23.772 0 0.614 0.793 25.845 0.000 0.000 21.263 LGA C 41 C 41 30.461 1 0.488 0.577 32.868 0.000 0.000 32.716 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 8.117 8.159 8.460 23.503 15.856 4.124 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 22 2.49 52.439 46.757 0.849 LGA_LOCAL RMSD: 2.492 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.115 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 8.117 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.825533 * X + -0.464198 * Y + 0.320958 * Z + -1.823924 Y_new = 0.374582 * X + -0.876078 * Y + -0.303604 * Z + 0.225063 Z_new = 0.422117 * X + -0.130410 * Y + 0.897112 * Z + 4.677811 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.715629 -0.435780 -0.144356 [DEG: 155.5941 -24.9683 -8.2710 ] ZXZ: 0.813177 0.457608 1.870438 [DEG: 46.5916 26.2190 107.1682 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS041_4 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_4.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 22 2.49 46.757 8.12 REMARK ---------------------------------------------------------- MOLECULE T0955TS041_4 PFRMAT TS TARGET T0955 MODEL 4 PARENT N/A ATOM 8 N SER 1 -0.952 -14.102 -1.372 1.00 0.00 N ATOM 10 CA SER 1 -1.757 -12.907 -0.988 1.00 0.00 C ATOM 4 C SER 1 -1.196 -12.232 0.273 1.00 0.00 C ATOM 5 O SER 1 -1.256 -11.002 0.395 1.00 0.00 O ATOM 1 CB SER 1 -3.223 -13.302 -0.772 1.00 0.00 C ATOM 2 OG SER 1 -3.347 -14.374 0.151 1.00 0.00 O ATOM 11 N GLN 2 -0.654 -13.046 1.191 1.00 0.00 N ATOM 13 CA GLN 2 -0.059 -12.599 2.472 1.00 0.00 C ATOM 21 C GLN 2 1.250 -11.804 2.317 1.00 0.00 C ATOM 22 O GLN 2 1.461 -10.815 3.031 1.00 0.00 O ATOM 14 CB GLN 2 0.171 -13.794 3.408 1.00 0.00 C ATOM 15 CG GLN 2 -1.101 -14.440 3.945 1.00 0.00 C ATOM 16 CD GLN 2 -0.817 -15.613 4.864 1.00 0.00 C ATOM 17 OE1 GLN 2 -0.732 -16.757 4.419 1.00 0.00 O ATOM 18 NE2 GLN 2 -0.669 -15.334 6.154 1.00 0.00 N ATOM 23 N GLU 3 2.093 -12.222 1.360 1.00 0.00 N ATOM 25 CA GLU 3 3.397 -11.590 1.060 1.00 0.00 C ATOM 31 C GLU 3 3.248 -10.176 0.471 1.00 0.00 C ATOM 32 O GLU 3 3.956 -9.254 0.897 1.00 0.00 O ATOM 26 CB GLU 3 4.222 -12.470 0.109 1.00 0.00 C ATOM 27 CG GLU 3 4.718 -13.780 0.718 1.00 0.00 C ATOM 28 CD GLU 3 5.522 -14.614 -0.262 1.00 0.00 C ATOM 29 OE1 GLU 3 4.917 -15.444 -0.974 1.00 0.00 O ATOM 30 OE2 GLU 3 6.757 -14.444 -0.319 1.00 0.00 O ATOM 33 N THR 4 2.299 -10.016 -0.465 1.00 0.00 N ATOM 35 CA THR 4 1.990 -8.737 -1.141 1.00 0.00 C ATOM 40 C THR 4 1.363 -7.714 -0.172 1.00 0.00 C ATOM 41 O THR 4 1.689 -6.518 -0.225 1.00 0.00 O ATOM 36 CB THR 4 1.056 -8.944 -2.372 1.00 0.00 C ATOM 37 OG1 THR 4 -0.075 -9.740 -1.995 1.00 0.00 O ATOM 39 CG2 THR 4 1.805 -9.628 -3.510 1.00 0.00 C ATOM 42 N ARG 5 0.516 -8.218 0.739 1.00 0.00 N ATOM 44 CA ARG 5 -0.187 -7.428 1.769 1.00 0.00 C ATOM 57 C ARG 5 0.816 -6.886 2.811 1.00 0.00 C ATOM 58 O ARG 5 0.755 -5.707 3.173 1.00 0.00 O ATOM 45 CB ARG 5 -1.269 -8.286 2.447 1.00 0.00 C ATOM 46 CG ARG 5 -2.562 -7.540 2.821 1.00 0.00 C ATOM 47 CD ARG 5 -3.584 -8.457 3.492 1.00 0.00 C ATOM 48 NE ARG 5 -3.171 -8.889 4.831 1.00 0.00 N ATOM 50 CZ ARG 5 -3.868 -9.703 5.625 1.00 0.00 C ATOM 51 NH1 ARG 5 -3.385 -10.020 6.819 1.00 0.00 N ATOM 54 NH2 ARG 5 -5.038 -10.204 5.242 1.00 0.00 N ATOM 59 N LYS 6 1.761 -7.744 3.227 1.00 0.00 N ATOM 61 CA LYS 6 2.807 -7.409 4.215 1.00 0.00 C ATOM 70 C LYS 6 3.827 -6.378 3.707 1.00 0.00 C ATOM 71 O LYS 6 4.119 -5.410 4.420 1.00 0.00 O ATOM 62 CB LYS 6 3.532 -8.674 4.697 1.00 0.00 C ATOM 63 CG LYS 6 2.733 -9.528 5.674 1.00 0.00 C ATOM 64 CD LYS 6 3.521 -10.761 6.103 1.00 0.00 C ATOM 65 CE LYS 6 2.738 -11.634 7.080 1.00 0.00 C ATOM 66 NZ LYS 6 1.559 -12.313 6.463 1.00 0.00 N ATOM 72 N LYS 7 4.322 -6.560 2.471 1.00 0.00 N ATOM 74 CA LYS 7 5.298 -5.634 1.864 1.00 0.00 C ATOM 83 C LYS 7 4.721 -4.242 1.538 1.00 0.00 C ATOM 84 O LYS 7 5.401 -3.236 1.753 1.00 0.00 O ATOM 75 CB LYS 7 6.040 -6.251 0.654 1.00 0.00 C ATOM 76 CG LYS 7 5.209 -6.746 -0.540 1.00 0.00 C ATOM 77 CD LYS 7 6.118 -7.102 -1.712 1.00 0.00 C ATOM 78 CE LYS 7 5.351 -7.720 -2.875 1.00 0.00 C ATOM 79 NZ LYS 7 4.954 -9.134 -2.621 1.00 0.00 N ATOM 85 N CYS 8 3.463 -4.201 1.067 1.00 0.00 N ATOM 87 CA CYS 8 2.758 -2.948 0.722 1.00 0.00 C ATOM 90 C CYS 8 2.436 -2.094 1.962 1.00 0.00 C ATOM 91 O CYS 8 2.623 -0.872 1.935 1.00 0.00 O ATOM 88 CB CYS 8 1.485 -3.230 -0.090 1.00 0.00 C ATOM 89 SG CYS 8 0.151 -4.076 0.791 1.00 0.00 S ATOM 92 N THR 9 1.993 -2.755 3.043 1.00 0.00 N ATOM 94 CA THR 9 1.649 -2.106 4.326 1.00 0.00 C ATOM 99 C THR 9 2.920 -1.554 5.017 1.00 0.00 C ATOM 100 O THR 9 2.889 -0.444 5.555 1.00 0.00 O ATOM 95 CB THR 9 0.861 -3.077 5.273 1.00 0.00 C ATOM 96 OG1 THR 9 -0.132 -3.772 4.511 1.00 0.00 O ATOM 98 CG2 THR 9 0.134 -2.307 6.393 1.00 0.00 C ATOM 101 N GLU 10 4.027 -2.308 4.941 1.00 0.00 N ATOM 103 CA GLU 10 5.325 -1.926 5.536 1.00 0.00 C ATOM 109 C GLU 10 5.981 -0.719 4.845 1.00 0.00 C ATOM 110 O GLU 10 6.415 0.215 5.530 1.00 0.00 O ATOM 104 CB GLU 10 6.294 -3.117 5.555 1.00 0.00 C ATOM 105 CG GLU 10 6.011 -4.140 6.650 1.00 0.00 C ATOM 106 CD GLU 10 6.991 -5.299 6.635 1.00 0.00 C ATOM 107 OE1 GLU 10 6.716 -6.303 5.944 1.00 0.00 O ATOM 108 OE2 GLU 10 8.033 -5.208 7.316 1.00 0.00 O ATOM 111 N MET 11 6.002 -0.720 3.502 1.00 0.00 N ATOM 113 CA MET 11 6.590 0.377 2.709 1.00 0.00 C ATOM 117 C MET 11 5.789 1.690 2.807 1.00 0.00 C ATOM 118 O MET 11 6.380 2.756 2.994 1.00 0.00 O ATOM 119 CB MET 11 6.866 -0.049 1.245 1.00 0.00 C ATOM 114 CG MET 11 5.667 -0.439 0.356 1.00 0.00 C ATOM 115 SD MET 11 4.791 0.979 -0.338 1.00 0.00 S ATOM 116 CE MET 11 5.453 1.015 -2.010 1.00 0.00 C ATOM 120 N LYS 12 4.451 1.575 2.770 1.00 0.00 N ATOM 122 CA LYS 12 3.525 2.722 2.867 1.00 0.00 C ATOM 131 C LYS 12 3.569 3.380 4.255 1.00 0.00 C ATOM 132 O LYS 12 3.510 4.610 4.356 1.00 0.00 O ATOM 123 CB LYS 12 2.095 2.310 2.507 1.00 0.00 C ATOM 124 CG LYS 12 1.853 2.123 1.014 1.00 0.00 C ATOM 125 CD LYS 12 0.441 1.630 0.729 1.00 0.00 C ATOM 126 CE LYS 12 0.186 1.437 -0.764 1.00 0.00 C ATOM 127 NZ LYS 12 0.145 2.717 -1.532 1.00 0.00 N ATOM 133 N LYS 13 3.686 2.553 5.306 1.00 0.00 N ATOM 135 CA LYS 13 3.792 3.007 6.707 1.00 0.00 C ATOM 144 C LYS 13 5.139 3.701 6.968 1.00 0.00 C ATOM 145 O LYS 13 5.196 4.678 7.723 1.00 0.00 O ATOM 136 CB LYS 13 3.598 1.847 7.688 1.00 0.00 C ATOM 137 CG LYS 13 2.142 1.492 7.953 1.00 0.00 C ATOM 138 CD LYS 13 2.023 0.360 8.969 1.00 0.00 C ATOM 139 CE LYS 13 0.568 0.015 9.282 1.00 0.00 C ATOM 140 NZ LYS 13 -0.152 1.087 10.033 1.00 0.00 N ATOM 146 N LYS 14 6.207 3.189 6.331 1.00 0.00 N ATOM 148 CA LYS 14 7.576 3.730 6.455 1.00 0.00 C ATOM 157 C LYS 14 7.780 5.119 5.820 1.00 0.00 C ATOM 158 O LYS 14 8.343 6.002 6.478 1.00 0.00 O ATOM 149 CB LYS 14 8.612 2.741 5.901 1.00 0.00 C ATOM 150 CG LYS 14 8.951 1.594 6.844 1.00 0.00 C ATOM 151 CD LYS 14 9.981 0.660 6.230 1.00 0.00 C ATOM 152 CE LYS 14 10.319 -0.485 7.170 1.00 0.00 C ATOM 153 NZ LYS 14 11.325 -1.410 6.581 1.00 0.00 N ATOM 159 N PHE 15 7.336 5.311 4.565 1.00 0.00 N ATOM 161 CA PHE 15 7.451 6.620 3.889 1.00 0.00 C ATOM 169 C PHE 15 6.513 7.736 4.387 1.00 0.00 C ATOM 170 O PHE 15 6.897 8.908 4.413 1.00 0.00 O ATOM 162 CB PHE 15 7.541 6.540 2.327 1.00 0.00 C ATOM 163 CG PHE 15 6.317 5.965 1.597 1.00 0.00 C ATOM 164 CD1 PHE 15 6.447 4.780 0.844 1.00 0.00 C ATOM 165 CD2 PHE 15 5.081 6.663 1.540 1.00 0.00 C ATOM 166 CE1 PHE 15 5.378 4.293 0.040 1.00 0.00 C ATOM 167 CE2 PHE 15 4.002 6.189 0.743 1.00 0.00 C ATOM 168 CZ PHE 15 4.153 5.001 -0.011 1.00 0.00 C ATOM 171 N LYS 16 5.291 7.337 4.780 1.00 0.00 N ATOM 173 CA LYS 16 4.185 8.188 5.301 1.00 0.00 C ATOM 182 C LYS 16 3.742 9.439 4.494 1.00 0.00 C ATOM 183 O LYS 16 4.339 10.520 4.619 1.00 0.00 O ATOM 174 CB LYS 16 4.313 8.474 6.831 1.00 0.00 C ATOM 175 CG LYS 16 5.567 9.218 7.334 1.00 0.00 C ATOM 176 CD LYS 16 5.527 9.414 8.846 1.00 0.00 C ATOM 177 CE LYS 16 6.759 10.152 9.365 1.00 0.00 C ATOM 178 NZ LYS 16 6.818 11.584 8.943 1.00 0.00 N ATOM 184 N ASN 17 2.728 9.244 3.635 1.00 0.00 N ATOM 186 CA ASN 17 2.140 10.291 2.779 1.00 0.00 C ATOM 193 C ASN 17 0.609 10.406 3.008 1.00 0.00 C ATOM 194 O ASN 17 0.170 11.318 3.719 1.00 0.00 O ATOM 187 CB ASN 17 2.470 10.022 1.290 1.00 0.00 C ATOM 188 CG ASN 17 2.511 11.296 0.444 1.00 0.00 C ATOM 189 OD1 ASN 17 1.500 11.711 -0.126 1.00 0.00 O ATOM 190 ND2 ASN 17 3.688 11.908 0.350 1.00 0.00 N ATOM 195 N CYS 18 -0.183 9.495 2.410 1.00 0.00 N ATOM 197 CA CYS 18 -1.661 9.479 2.516 1.00 0.00 C ATOM 200 C CYS 18 -2.243 8.066 2.701 1.00 0.00 C ATOM 201 O CYS 18 -1.663 7.086 2.218 1.00 0.00 O ATOM 198 CB CYS 18 -2.296 10.134 1.274 1.00 0.00 C ATOM 199 SG CYS 18 -4.084 10.430 1.380 1.00 0.00 S ATOM 202 N GLU 19 -3.411 7.994 3.358 1.00 0.00 N ATOM 204 CA GLU 19 -4.153 6.747 3.659 1.00 0.00 C ATOM 210 C GLU 19 -4.689 5.973 2.431 1.00 0.00 C ATOM 211 O GLU 19 -5.211 6.587 1.492 1.00 0.00 O ATOM 205 CB GLU 19 -5.299 7.028 4.659 1.00 0.00 C ATOM 206 CG GLU 19 -6.221 8.231 4.339 1.00 0.00 C ATOM 207 CD GLU 19 -7.402 8.337 5.283 1.00 0.00 C ATOM 208 OE1 GLU 19 -7.264 8.984 6.342 1.00 0.00 O ATOM 209 OE2 GLU 19 -8.470 7.772 4.966 1.00 0.00 O ATOM 212 N VAL 20 -4.537 4.640 2.454 1.00 0.00 N ATOM 214 CA VAL 20 -4.992 3.743 1.369 1.00 0.00 C ATOM 218 C VAL 20 -6.078 2.793 1.919 1.00 0.00 C ATOM 219 O VAL 20 -5.969 2.295 3.048 1.00 0.00 O ATOM 215 CB VAL 20 -3.799 2.915 0.722 1.00 0.00 C ATOM 216 CG1 VAL 20 -4.214 2.301 -0.629 1.00 0.00 C ATOM 217 CG2 VAL 20 -2.568 3.800 0.520 1.00 0.00 C ATOM 220 N ARG 21 -7.129 2.590 1.114 1.00 0.00 N ATOM 222 CA ARG 21 -8.273 1.719 1.434 1.00 0.00 C ATOM 235 C ARG 21 -8.396 0.638 0.351 1.00 0.00 C ATOM 236 O ARG 21 -8.081 0.899 -0.818 1.00 0.00 O ATOM 223 CB ARG 21 -9.582 2.525 1.511 1.00 0.00 C ATOM 224 CG ARG 21 -9.666 3.501 2.687 1.00 0.00 C ATOM 225 CD ARG 21 -10.992 4.261 2.714 1.00 0.00 C ATOM 226 NE ARG 21 -11.125 5.215 1.608 1.00 0.00 N ATOM 228 CZ ARG 21 -12.189 5.988 1.384 1.00 0.00 C ATOM 229 NH1 ARG 21 -12.190 6.814 0.347 1.00 0.00 N ATOM 232 NH2 ARG 21 -13.251 5.946 2.183 1.00 0.00 N ATOM 237 N CYS 22 -8.824 -0.568 0.754 1.00 0.00 N ATOM 239 CA CYS 22 -8.998 -1.724 -0.146 1.00 0.00 C ATOM 242 C CYS 22 -10.484 -2.068 -0.369 1.00 0.00 C ATOM 243 O CYS 22 -11.350 -1.580 0.369 1.00 0.00 O ATOM 240 CB CYS 22 -8.252 -2.945 0.409 1.00 0.00 C ATOM 241 SG CYS 22 -6.464 -2.720 0.557 1.00 0.00 S ATOM 244 N ASP 23 -10.756 -2.915 -1.374 1.00 0.00 N ATOM 246 CA ASP 23 -12.112 -3.366 -1.765 1.00 0.00 C ATOM 251 C ASP 23 -12.867 -4.225 -0.722 1.00 0.00 C ATOM 252 O ASP 23 -12.269 -4.655 0.272 1.00 0.00 O ATOM 247 CB ASP 23 -12.068 -4.071 -3.146 1.00 0.00 C ATOM 248 CG ASP 23 -10.977 -5.145 -3.250 1.00 0.00 C ATOM 249 OD1 ASP 23 -9.844 -4.812 -3.661 1.00 0.00 O ATOM 250 OD2 ASP 23 -11.261 -6.320 -2.931 1.00 0.00 O ATOM 253 N GLU 24 -14.173 -4.452 -0.962 1.00 0.00 N ATOM 255 CA GLU 24 -15.117 -5.233 -0.113 1.00 0.00 C ATOM 261 C GLU 24 -15.386 -4.643 1.285 1.00 0.00 C ATOM 262 O GLU 24 -14.460 -4.156 1.943 1.00 0.00 O ATOM 256 CB GLU 24 -14.719 -6.721 0.002 1.00 0.00 C ATOM 257 CG GLU 24 -14.853 -7.515 -1.295 1.00 0.00 C ATOM 258 CD GLU 24 -14.461 -8.972 -1.134 1.00 0.00 C ATOM 259 OE1 GLU 24 -15.339 -9.793 -0.794 1.00 0.00 O ATOM 260 OE2 GLU 24 -13.275 -9.297 -1.352 1.00 0.00 O ATOM 263 N SER 25 -16.656 -4.698 1.711 1.00 0.00 N ATOM 265 CA SER 25 -17.123 -4.179 3.012 1.00 0.00 C ATOM 269 C SER 25 -17.288 -5.307 4.058 1.00 0.00 C ATOM 270 O SER 25 -17.812 -5.073 5.159 1.00 0.00 O ATOM 266 CB SER 25 -18.444 -3.413 2.815 1.00 0.00 C ATOM 267 OG SER 25 -18.842 -2.735 3.997 1.00 0.00 O ATOM 271 N ASN 26 -16.782 -6.502 3.722 1.00 0.00 N ATOM 273 CA ASN 26 -16.849 -7.700 4.582 1.00 0.00 C ATOM 280 C ASN 26 -15.595 -7.850 5.473 1.00 0.00 C ATOM 281 O ASN 26 -15.720 -8.201 6.653 1.00 0.00 O ATOM 274 CB ASN 26 -17.051 -8.957 3.713 1.00 0.00 C ATOM 275 CG ASN 26 -17.836 -10.060 4.427 1.00 0.00 C ATOM 276 OD1 ASN 26 -17.255 -10.929 5.081 1.00 0.00 O ATOM 277 ND2 ASN 26 -19.159 -10.034 4.288 1.00 0.00 N ATOM 282 N HIS 27 -14.413 -7.584 4.899 1.00 0.00 N ATOM 284 CA HIS 27 -13.120 -7.680 5.605 1.00 0.00 C ATOM 292 C HIS 27 -12.421 -6.324 5.828 1.00 0.00 C ATOM 293 O HIS 27 -12.028 -6.012 6.958 1.00 0.00 O ATOM 294 CB HIS 27 -12.169 -8.690 4.901 1.00 0.00 C ATOM 285 CG HIS 27 -12.032 -8.494 3.414 1.00 0.00 C ATOM 287 ND1 HIS 27 -11.420 -7.391 2.858 1.00 0.00 N ATOM 286 CD2 HIS 27 -12.414 -9.274 2.373 1.00 0.00 C ATOM 289 CE1 HIS 27 -11.430 -7.497 1.542 1.00 0.00 C ATOM 290 NE2 HIS 27 -12.027 -8.630 1.221 1.00 0.00 N ATOM 295 N CYS 28 -12.294 -5.530 4.748 1.00 0.00 N ATOM 297 CA CYS 28 -11.653 -4.186 4.699 1.00 0.00 C ATOM 300 C CYS 28 -10.215 -4.080 5.250 1.00 0.00 C ATOM 301 O CYS 28 -9.945 -4.504 6.382 1.00 0.00 O ATOM 298 CB CYS 28 -12.543 -3.104 5.345 1.00 0.00 C ATOM 299 SG CYS 28 -14.155 -2.881 4.564 1.00 0.00 S ATOM 302 N VAL 29 -9.306 -3.531 4.427 1.00 0.00 N ATOM 304 CA VAL 29 -7.882 -3.334 4.777 1.00 0.00 C ATOM 308 C VAL 29 -7.582 -1.821 4.680 1.00 0.00 C ATOM 309 O VAL 29 -7.968 -1.167 3.701 1.00 0.00 O ATOM 305 CB VAL 29 -6.894 -4.159 3.838 1.00 0.00 C ATOM 306 CG1 VAL 29 -5.497 -4.280 4.473 1.00 0.00 C ATOM 307 CG2 VAL 29 -7.447 -5.555 3.546 1.00 0.00 C ATOM 310 N GLU 30 -6.941 -1.282 5.727 1.00 0.00 N ATOM 312 CA GLU 30 -6.562 0.139 5.820 1.00 0.00 C ATOM 318 C GLU 30 -5.051 0.248 6.045 1.00 0.00 C ATOM 319 O GLU 30 -4.497 -0.438 6.916 1.00 0.00 O ATOM 313 CB GLU 30 -7.317 0.839 6.967 1.00 0.00 C ATOM 314 CG GLU 30 -8.828 0.946 6.771 1.00 0.00 C ATOM 315 CD GLU 30 -9.539 1.508 7.988 1.00 0.00 C ATOM 316 OE1 GLU 30 -9.703 2.743 8.067 1.00 0.00 O ATOM 317 OE2 GLU 30 -9.938 0.713 8.865 1.00 0.00 O ATOM 320 N VAL 31 -4.393 1.072 5.218 1.00 0.00 N ATOM 322 CA VAL 31 -2.943 1.339 5.295 1.00 0.00 C ATOM 326 C VAL 31 -2.921 2.807 5.742 1.00 0.00 C ATOM 327 O VAL 31 -3.657 3.642 5.194 1.00 0.00 O ATOM 323 CB VAL 31 -2.206 1.146 3.918 1.00 0.00 C ATOM 324 CG1 VAL 31 -0.735 0.830 4.154 1.00 0.00 C ATOM 325 CG2 VAL 31 -2.850 0.027 3.096 1.00 0.00 C ATOM 328 N ARG 32 -2.099 3.100 6.755 1.00 0.00 N ATOM 330 CA ARG 32 -2.013 4.450 7.321 1.00 0.00 C ATOM 343 C ARG 32 -0.666 5.094 6.964 1.00 0.00 C ATOM 344 O ARG 32 0.400 4.507 7.197 1.00 0.00 O ATOM 331 CB ARG 32 -2.172 4.374 8.854 1.00 0.00 C ATOM 332 CG ARG 32 -3.366 3.550 9.346 1.00 0.00 C ATOM 333 CD ARG 32 -3.327 3.352 10.853 1.00 0.00 C ATOM 334 NE ARG 32 -4.462 2.561 11.333 1.00 0.00 N ATOM 336 CZ ARG 32 -4.676 2.219 12.605 1.00 0.00 C ATOM 337 NH1 ARG 32 -5.744 1.497 12.917 1.00 0.00 N ATOM 340 NH2 ARG 32 -3.837 2.588 13.568 1.00 0.00 N ATOM 345 N CYS 33 -0.744 6.277 6.339 1.00 0.00 N ATOM 347 CA CYS 33 0.419 7.072 5.919 1.00 0.00 C ATOM 350 C CYS 33 0.267 8.546 6.324 1.00 0.00 C ATOM 351 O CYS 33 1.252 9.194 6.690 1.00 0.00 O ATOM 348 CB CYS 33 0.635 6.960 4.405 1.00 0.00 C ATOM 349 SG CYS 33 0.721 5.264 3.786 1.00 0.00 S ATOM 352 N SER 34 -0.976 9.051 6.268 1.00 0.00 N ATOM 354 CA SER 34 -1.340 10.448 6.592 1.00 0.00 C ATOM 358 C SER 34 -1.316 10.766 8.103 1.00 0.00 C ATOM 359 O SER 34 -1.267 9.848 8.924 1.00 0.00 O ATOM 355 CB SER 34 -2.724 10.770 6.005 1.00 0.00 C ATOM 356 OG SER 34 -3.027 12.155 6.094 1.00 0.00 O ATOM 360 N ASP 35 -1.368 12.063 8.443 1.00 0.00 N ATOM 362 CA ASP 35 -1.351 12.569 9.832 1.00 0.00 C ATOM 367 C ASP 35 -2.682 12.326 10.578 1.00 0.00 C ATOM 368 O ASP 35 -2.767 12.537 11.798 1.00 0.00 O ATOM 363 CB ASP 35 -1.000 14.071 9.844 1.00 0.00 C ATOM 364 CG ASP 35 0.421 14.353 9.367 1.00 0.00 C ATOM 365 OD1 ASP 35 0.615 14.568 8.150 1.00 0.00 O ATOM 366 OD2 ASP 35 1.344 14.379 10.211 1.00 0.00 O ATOM 369 N THR 36 -3.687 11.835 9.837 1.00 0.00 N ATOM 371 CA THR 36 -5.036 11.529 10.356 1.00 0.00 C ATOM 376 C THR 36 -5.190 10.060 10.829 1.00 0.00 C ATOM 377 O THR 36 -5.839 9.807 11.854 1.00 0.00 O ATOM 372 CB THR 36 -6.169 11.947 9.324 1.00 0.00 C ATOM 373 OG1 THR 36 -7.454 11.521 9.799 1.00 0.00 O ATOM 375 CG2 THR 36 -5.915 11.383 7.910 1.00 0.00 C ATOM 378 N LYS 37 -4.586 9.123 10.084 1.00 0.00 N ATOM 380 CA LYS 37 -4.620 7.680 10.392 1.00 0.00 C ATOM 389 C LYS 37 -3.307 7.161 11.000 1.00 0.00 C ATOM 390 O LYS 37 -3.344 6.357 11.940 1.00 0.00 O ATOM 381 CB LYS 37 -5.010 6.859 9.156 1.00 0.00 C ATOM 382 CG LYS 37 -6.509 6.822 8.888 1.00 0.00 C ATOM 383 CD LYS 37 -6.862 5.775 7.842 1.00 0.00 C ATOM 384 CE LYS 37 -8.365 5.698 7.623 1.00 0.00 C ATOM 385 NZ LYS 37 -8.717 4.730 6.549 1.00 0.00 N ATOM 391 N TYR 38 -2.165 7.647 10.487 1.00 0.00 N ATOM 393 CA TYR 38 -0.821 7.265 10.971 1.00 0.00 C ATOM 403 C TYR 38 -0.320 8.294 12.010 1.00 0.00 C ATOM 404 O TYR 38 -0.573 9.496 11.865 1.00 0.00 O ATOM 394 CB TYR 38 0.183 7.152 9.793 1.00 0.00 C ATOM 395 CG TYR 38 1.529 6.459 10.079 1.00 0.00 C ATOM 396 CD1 TYR 38 1.665 5.051 9.988 1.00 0.00 C ATOM 398 CD2 TYR 38 2.678 7.213 10.420 1.00 0.00 C ATOM 397 CE1 TYR 38 2.913 4.413 10.235 1.00 0.00 C ATOM 399 CE2 TYR 38 3.929 6.582 10.668 1.00 0.00 C ATOM 400 CZ TYR 38 4.034 5.186 10.572 1.00 0.00 C ATOM 401 OH TYR 38 5.244 4.574 10.812 1.00 0.00 O ATOM 405 N THR 39 0.372 7.798 13.048 1.00 0.00 N ATOM 407 CA THR 39 0.932 8.615 14.142 1.00 0.00 C ATOM 412 C THR 39 2.474 8.642 14.033 1.00 0.00 C ATOM 413 O THR 39 3.089 7.638 13.641 1.00 0.00 O ATOM 408 CB THR 39 0.504 8.062 15.549 1.00 0.00 C ATOM 409 OG1 THR 39 -0.749 7.374 15.430 1.00 0.00 O ATOM 411 CG2 THR 39 0.327 9.206 16.561 1.00 0.00 C ATOM 414 N LEU 40 3.068 9.804 14.342 1.00 0.00 N ATOM 416 CA LEU 40 4.525 10.028 14.300 1.00 0.00 C ATOM 421 C LEU 40 5.146 10.191 15.701 1.00 0.00 C ATOM 422 O LEU 40 6.240 9.672 15.955 1.00 0.00 O ATOM 417 CB LEU 40 4.873 11.246 13.389 1.00 0.00 C ATOM 418 CG LEU 40 4.222 12.656 13.218 1.00 0.00 C ATOM 419 CD1 LEU 40 2.826 12.583 12.579 1.00 0.00 C ATOM 420 CD2 LEU 40 4.193 13.478 14.516 1.00 0.00 C ATOM 423 N CYS 41 4.443 10.914 16.584 1.00 0.00 N ATOM 425 CA CYS 41 4.874 11.172 17.971 1.00 0.00 C ATOM 428 C CYS 41 3.951 10.483 18.979 1.00 0.00 C ATOM 429 O CYS 41 2.742 10.366 18.687 1.00 0.00 O ATOM 426 CB CYS 41 4.922 12.681 18.253 1.00 0.00 C ATOM 427 SG CYS 41 6.172 13.580 17.304 1.00 0.00 S TER END