####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS041_3 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 7 - 31 4.88 10.53 LCS_AVERAGE: 58.48 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 1.80 10.85 LCS_AVERAGE: 34.21 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.82 10.40 LCS_AVERAGE: 21.65 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 19 24 3 8 13 16 17 19 21 22 23 24 25 27 28 28 31 31 32 33 35 36 LCS_GDT Q 2 Q 2 14 19 24 5 12 15 16 17 18 21 22 23 24 25 27 28 28 31 31 32 33 35 36 LCS_GDT E 3 E 3 14 19 24 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT T 4 T 4 14 19 24 6 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT R 5 R 5 14 19 24 5 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 6 K 6 14 19 24 6 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 7 K 7 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT C 8 C 8 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT T 9 T 9 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT E 10 E 10 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT M 11 M 11 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 12 K 12 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 13 K 13 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 14 K 14 14 19 25 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT F 15 F 15 14 19 25 6 11 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT K 16 K 16 7 19 25 3 5 8 15 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT N 17 N 17 7 19 25 3 6 12 15 17 19 21 21 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT C 18 C 18 7 19 25 3 6 10 15 17 18 19 20 21 22 24 25 28 28 31 31 33 34 35 36 LCS_GDT E 19 E 19 7 19 25 3 6 10 15 17 18 19 20 21 22 24 25 26 28 31 31 33 34 35 36 LCS_GDT V 20 V 20 6 15 25 4 6 7 9 11 13 14 16 20 20 22 24 25 27 29 31 33 34 35 36 LCS_GDT R 21 R 21 6 10 25 4 6 7 8 10 13 14 16 17 19 21 22 24 27 29 30 33 34 35 36 LCS_GDT C 22 C 22 6 10 25 4 6 7 8 11 13 14 16 17 19 19 22 24 27 29 30 33 34 35 36 LCS_GDT D 23 D 23 6 10 25 4 6 7 8 10 13 14 16 17 19 19 22 24 27 29 30 33 34 35 36 LCS_GDT E 24 E 24 5 9 25 3 6 6 7 10 13 14 16 17 18 19 22 22 23 26 30 30 31 32 35 LCS_GDT S 25 S 25 5 9 25 3 6 7 7 10 13 14 16 17 18 20 23 24 27 29 31 33 34 35 36 LCS_GDT N 26 N 26 5 10 25 3 6 6 7 10 13 14 16 17 19 21 23 25 28 31 31 33 34 35 36 LCS_GDT H 27 H 27 8 11 25 4 6 8 9 11 12 14 16 17 19 21 22 25 27 31 31 33 34 35 36 LCS_GDT C 28 C 28 8 11 25 4 7 8 9 11 12 14 16 17 20 24 27 28 28 31 31 33 34 35 36 LCS_GDT V 29 V 29 8 11 25 4 7 8 9 11 12 14 16 21 23 25 27 28 28 31 31 33 34 35 36 LCS_GDT E 30 E 30 8 11 25 4 7 8 10 16 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT V 31 V 31 8 11 25 4 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT R 32 R 32 8 11 24 4 7 14 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT C 33 C 33 8 11 24 4 7 8 11 16 18 21 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT S 34 S 34 8 11 24 4 7 8 9 14 18 20 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT D 35 D 35 5 11 24 3 4 7 9 11 16 19 20 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT T 36 T 36 4 11 24 3 4 5 9 11 12 19 20 23 24 25 27 28 28 31 31 32 34 35 36 LCS_GDT K 37 K 37 5 11 24 4 5 7 9 11 16 20 22 23 24 25 27 28 28 31 31 33 34 35 36 LCS_GDT Y 38 Y 38 5 5 24 4 5 6 6 6 9 9 12 15 18 19 25 25 27 28 29 30 32 34 35 LCS_GDT T 39 T 39 5 5 24 4 5 6 6 6 8 8 9 10 12 13 15 15 17 17 20 22 23 24 25 LCS_GDT L 40 L 40 5 5 11 4 5 6 6 6 8 8 9 10 12 13 15 15 16 17 18 19 19 19 21 LCS_GDT C 41 C 41 5 5 11 3 5 6 6 6 8 8 9 10 12 13 15 15 16 17 18 19 19 19 21 LCS_AVERAGE LCS_A: 38.11 ( 21.65 34.21 58.48 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 12 15 16 17 19 21 22 23 24 25 27 28 28 31 31 33 34 35 36 GDT PERCENT_AT 17.07 29.27 36.59 39.02 41.46 46.34 51.22 53.66 56.10 58.54 60.98 65.85 68.29 68.29 75.61 75.61 80.49 82.93 85.37 87.80 GDT RMS_LOCAL 0.24 0.62 0.83 1.00 1.20 1.66 1.89 2.24 2.39 2.60 2.77 3.38 3.57 3.57 4.49 4.49 5.64 5.74 5.70 5.93 GDT RMS_ALL_AT 9.94 10.18 10.31 10.15 10.09 9.99 10.00 9.83 9.89 9.86 9.92 9.50 9.51 9.51 9.05 9.05 8.92 8.83 8.85 8.85 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.093 0 0.129 0.568 4.787 27.273 25.455 4.457 LGA Q 2 Q 2 2.592 0 0.233 0.915 7.356 45.000 22.020 7.356 LGA E 3 E 3 0.920 0 0.075 1.214 6.199 77.727 48.283 3.439 LGA T 4 T 4 1.169 0 0.022 0.035 1.517 65.455 63.377 1.498 LGA R 5 R 5 1.191 0 0.055 1.121 6.621 73.636 34.711 6.621 LGA K 6 K 6 0.641 0 0.041 1.132 4.749 86.364 57.374 4.749 LGA K 7 K 7 0.646 0 0.046 0.636 3.035 81.818 56.566 2.776 LGA C 8 C 8 0.946 0 0.043 0.683 3.195 77.727 65.758 3.195 LGA T 9 T 9 1.039 0 0.026 1.109 2.126 73.636 64.156 1.949 LGA E 10 E 10 0.916 0 0.007 0.779 4.876 81.818 49.091 4.876 LGA M 11 M 11 0.415 0 0.056 0.613 2.790 90.909 75.455 1.469 LGA K 12 K 12 1.901 0 0.051 0.968 6.792 45.455 31.717 6.792 LGA K 13 K 13 2.597 0 0.016 0.171 5.531 35.455 19.798 5.531 LGA K 14 K 14 1.190 0 0.070 0.140 3.675 82.727 53.737 3.574 LGA F 15 F 15 1.249 0 0.491 1.498 8.084 44.091 27.107 8.084 LGA K 16 K 16 3.773 0 0.280 1.235 4.864 14.091 16.768 2.610 LGA N 17 N 17 5.007 0 0.534 1.036 7.781 1.364 5.000 5.883 LGA C 18 C 18 6.943 0 0.578 1.093 10.396 0.000 0.000 6.314 LGA E 19 E 19 8.651 0 0.195 0.984 10.789 0.000 0.000 10.789 LGA V 20 V 20 10.286 0 0.136 0.268 11.912 0.000 0.000 10.992 LGA R 21 R 21 13.714 0 0.060 1.518 17.934 0.000 0.000 17.934 LGA C 22 C 22 15.514 0 0.017 0.130 16.193 0.000 0.000 15.279 LGA D 23 D 23 17.412 0 0.143 0.191 19.137 0.000 0.000 15.919 LGA E 24 E 24 21.651 0 0.043 0.968 30.269 0.000 0.000 29.453 LGA S 25 S 25 19.165 0 0.606 0.582 22.684 0.000 0.000 22.684 LGA N 26 N 26 12.601 0 0.649 0.896 15.798 0.000 0.000 15.798 LGA H 27 H 27 11.993 0 0.456 1.213 14.081 0.000 0.000 12.472 LGA C 28 C 28 8.901 0 0.071 0.105 10.003 0.000 0.000 9.775 LGA V 29 V 29 6.899 0 0.100 0.266 8.549 0.000 0.000 6.619 LGA E 30 E 30 4.069 0 0.033 0.924 6.302 9.091 6.263 6.302 LGA V 31 V 31 1.928 0 0.039 0.176 2.977 55.000 48.052 2.429 LGA R 32 R 32 1.138 0 0.175 1.135 3.294 50.000 42.645 2.049 LGA C 33 C 33 2.316 0 0.148 0.211 3.317 33.636 33.333 2.027 LGA S 34 S 34 3.635 0 0.229 0.685 5.767 10.909 13.333 3.010 LGA D 35 D 35 5.921 0 0.062 1.274 9.093 1.364 0.682 9.093 LGA T 36 T 36 6.200 0 0.646 0.771 8.779 0.000 0.000 5.105 LGA K 37 K 37 4.873 0 0.632 1.721 8.204 0.455 7.071 6.847 LGA Y 38 Y 38 10.400 0 0.035 1.327 12.105 0.000 0.000 11.238 LGA T 39 T 39 15.840 0 0.147 0.995 18.558 0.000 0.000 14.292 LGA L 40 L 40 21.281 0 0.613 0.665 23.149 0.000 0.000 19.375 LGA C 41 C 41 26.808 1 0.212 0.907 30.344 0.000 0.000 27.005 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 8.552 8.701 8.814 28.415 21.165 10.377 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 22 2.24 49.390 46.677 0.942 LGA_LOCAL RMSD: 2.236 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.835 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 8.552 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.441842 * X + -0.194752 * Y + -0.875698 * Z + 0.098560 Y_new = 0.529061 * X + -0.844895 * Y + -0.079041 * Z + 2.312565 Z_new = -0.724479 * X + -0.498221 * Y + 0.476345 * Z + -2.893682 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.266602 0.810279 -0.807841 [DEG: 129.8667 46.4256 -46.2859 ] ZXZ: -1.480780 1.074303 -2.173217 [DEG: -84.8424 61.5530 -124.5161 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS041_3 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 22 2.24 46.677 8.55 REMARK ---------------------------------------------------------- MOLECULE T0955TS041_3 PFRMAT TS TARGET T0955 MODEL 3 PARENT N/A ATOM 8 N SER 1 -3.118 -13.729 0.371 1.00 0.00 N ATOM 10 CA SER 1 -1.742 -14.275 0.541 1.00 0.00 C ATOM 4 C SER 1 -0.913 -13.418 1.515 1.00 0.00 C ATOM 5 O SER 1 -1.307 -12.289 1.831 1.00 0.00 O ATOM 1 CB SER 1 -1.043 -14.383 -0.823 1.00 0.00 C ATOM 2 OG SER 1 -1.063 -13.150 -1.522 1.00 0.00 O ATOM 11 N GLN 2 0.212 -13.973 1.991 1.00 0.00 N ATOM 13 CA GLN 2 1.147 -13.325 2.936 1.00 0.00 C ATOM 21 C GLN 2 1.921 -12.132 2.351 1.00 0.00 C ATOM 22 O GLN 2 2.112 -11.123 3.040 1.00 0.00 O ATOM 14 CB GLN 2 2.136 -14.351 3.507 1.00 0.00 C ATOM 15 CG GLN 2 1.518 -15.380 4.447 1.00 0.00 C ATOM 16 CD GLN 2 2.538 -16.369 4.980 1.00 0.00 C ATOM 17 OE1 GLN 2 2.764 -17.424 4.388 1.00 0.00 O ATOM 18 NE2 GLN 2 3.160 -16.031 6.105 1.00 0.00 N ATOM 23 N GLU 3 2.306 -12.244 1.071 1.00 0.00 N ATOM 25 CA GLU 3 3.071 -11.220 0.327 1.00 0.00 C ATOM 31 C GLU 3 2.320 -9.897 0.109 1.00 0.00 C ATOM 32 O GLU 3 2.898 -8.824 0.309 1.00 0.00 O ATOM 26 CB GLU 3 3.549 -11.774 -1.023 1.00 0.00 C ATOM 27 CG GLU 3 4.622 -12.857 -0.927 1.00 0.00 C ATOM 28 CD GLU 3 5.060 -13.370 -2.286 1.00 0.00 C ATOM 29 OE1 GLU 3 4.452 -14.343 -2.780 1.00 0.00 O ATOM 30 OE2 GLU 3 6.014 -12.803 -2.860 1.00 0.00 O ATOM 33 N THR 4 1.028 -9.988 -0.244 1.00 0.00 N ATOM 35 CA THR 4 0.160 -8.817 -0.491 1.00 0.00 C ATOM 40 C THR 4 -0.120 -8.000 0.794 1.00 0.00 C ATOM 41 O THR 4 -0.074 -6.762 0.758 1.00 0.00 O ATOM 36 CB THR 4 -1.171 -9.210 -1.255 1.00 0.00 C ATOM 37 OG1 THR 4 -1.988 -8.047 -1.450 1.00 0.00 O ATOM 39 CG2 THR 4 -1.979 -10.296 -0.515 1.00 0.00 C ATOM 42 N ARG 5 -0.368 -8.702 1.912 1.00 0.00 N ATOM 44 CA ARG 5 -0.634 -8.070 3.219 1.00 0.00 C ATOM 57 C ARG 5 0.588 -7.357 3.838 1.00 0.00 C ATOM 58 O ARG 5 0.460 -6.217 4.301 1.00 0.00 O ATOM 45 CB ARG 5 -1.318 -9.035 4.216 1.00 0.00 C ATOM 46 CG ARG 5 -0.634 -10.383 4.494 1.00 0.00 C ATOM 47 CD ARG 5 -1.417 -11.233 5.493 1.00 0.00 C ATOM 48 NE ARG 5 -1.390 -10.683 6.853 1.00 0.00 N ATOM 50 CZ ARG 5 -1.986 -11.228 7.913 1.00 0.00 C ATOM 51 NH1 ARG 5 -1.889 -10.634 9.095 1.00 0.00 N ATOM 54 NH2 ARG 5 -2.680 -12.359 7.810 1.00 0.00 N ATOM 59 N LYS 6 1.761 -8.013 3.800 1.00 0.00 N ATOM 61 CA LYS 6 3.013 -7.440 4.336 1.00 0.00 C ATOM 70 C LYS 6 3.529 -6.236 3.517 1.00 0.00 C ATOM 71 O LYS 6 3.958 -5.232 4.096 1.00 0.00 O ATOM 62 CB LYS 6 4.116 -8.505 4.550 1.00 0.00 C ATOM 63 CG LYS 6 4.604 -9.311 3.334 1.00 0.00 C ATOM 64 CD LYS 6 5.849 -10.116 3.694 1.00 0.00 C ATOM 65 CE LYS 6 6.295 -11.036 2.564 1.00 0.00 C ATOM 66 NZ LYS 6 5.437 -12.249 2.436 1.00 0.00 N ATOM 72 N LYS 7 3.438 -6.344 2.183 1.00 0.00 N ATOM 74 CA LYS 7 3.863 -5.290 1.239 1.00 0.00 C ATOM 83 C LYS 7 2.975 -4.036 1.299 1.00 0.00 C ATOM 84 O LYS 7 3.494 -2.917 1.263 1.00 0.00 O ATOM 75 CB LYS 7 3.924 -5.822 -0.198 1.00 0.00 C ATOM 76 CG LYS 7 5.138 -6.695 -0.495 1.00 0.00 C ATOM 77 CD LYS 7 5.129 -7.184 -1.935 1.00 0.00 C ATOM 78 CE LYS 7 6.341 -8.053 -2.230 1.00 0.00 C ATOM 79 NZ LYS 7 6.346 -8.540 -3.637 1.00 0.00 N ATOM 85 N CYS 8 1.652 -4.234 1.424 1.00 0.00 N ATOM 87 CA CYS 8 0.670 -3.134 1.510 1.00 0.00 C ATOM 90 C CYS 8 0.783 -2.335 2.821 1.00 0.00 C ATOM 91 O CYS 8 0.740 -1.104 2.788 1.00 0.00 O ATOM 88 CB CYS 8 -0.765 -3.648 1.310 1.00 0.00 C ATOM 89 SG CYS 8 -1.424 -4.698 2.628 1.00 0.00 S ATOM 92 N THR 9 0.967 -3.038 3.953 1.00 0.00 N ATOM 94 CA THR 9 1.108 -2.409 5.287 1.00 0.00 C ATOM 99 C THR 9 2.426 -1.609 5.433 1.00 0.00 C ATOM 100 O THR 9 2.423 -0.505 5.994 1.00 0.00 O ATOM 95 CB THR 9 0.895 -3.439 6.468 1.00 0.00 C ATOM 96 OG1 THR 9 0.910 -2.746 7.724 1.00 0.00 O ATOM 98 CG2 THR 9 1.960 -4.546 6.486 1.00 0.00 C ATOM 101 N GLU 10 3.525 -2.165 4.896 1.00 0.00 N ATOM 103 CA GLU 10 4.864 -1.538 4.915 1.00 0.00 C ATOM 109 C GLU 10 4.904 -0.284 4.025 1.00 0.00 C ATOM 110 O GLU 10 5.463 0.741 4.427 1.00 0.00 O ATOM 104 CB GLU 10 5.946 -2.534 4.477 1.00 0.00 C ATOM 105 CG GLU 10 6.302 -3.583 5.528 1.00 0.00 C ATOM 106 CD GLU 10 7.374 -4.547 5.054 1.00 0.00 C ATOM 107 OE1 GLU 10 8.570 -4.262 5.270 1.00 0.00 O ATOM 108 OE2 GLU 10 7.019 -5.592 4.468 1.00 0.00 O ATOM 111 N MET 11 4.273 -0.375 2.842 1.00 0.00 N ATOM 113 CA MET 11 4.175 0.727 1.864 1.00 0.00 C ATOM 117 C MET 11 3.286 1.868 2.384 1.00 0.00 C ATOM 118 O MET 11 3.605 3.043 2.174 1.00 0.00 O ATOM 119 CB MET 11 3.658 0.218 0.512 1.00 0.00 C ATOM 114 CG MET 11 4.743 -0.192 -0.495 1.00 0.00 C ATOM 115 SD MET 11 5.717 -1.669 -0.090 1.00 0.00 S ATOM 116 CE MET 11 7.284 -0.934 0.388 1.00 0.00 C ATOM 120 N LYS 12 2.210 1.502 3.103 1.00 0.00 N ATOM 122 CA LYS 12 1.245 2.449 3.700 1.00 0.00 C ATOM 131 C LYS 12 1.849 3.293 4.833 1.00 0.00 C ATOM 132 O LYS 12 1.599 4.500 4.904 1.00 0.00 O ATOM 123 CB LYS 12 -0.013 1.724 4.192 1.00 0.00 C ATOM 124 CG LYS 12 -1.045 1.459 3.106 1.00 0.00 C ATOM 125 CD LYS 12 -2.266 0.737 3.666 1.00 0.00 C ATOM 126 CE LYS 12 -3.316 0.460 2.592 1.00 0.00 C ATOM 127 NZ LYS 12 -2.885 -0.553 1.583 1.00 0.00 N ATOM 133 N LYS 13 2.623 2.646 5.715 1.00 0.00 N ATOM 135 CA LYS 13 3.311 3.300 6.846 1.00 0.00 C ATOM 144 C LYS 13 4.468 4.202 6.366 1.00 0.00 C ATOM 145 O LYS 13 4.612 5.336 6.837 1.00 0.00 O ATOM 136 CB LYS 13 3.834 2.257 7.846 1.00 0.00 C ATOM 137 CG LYS 13 2.750 1.514 8.620 1.00 0.00 C ATOM 138 CD LYS 13 3.354 0.502 9.586 1.00 0.00 C ATOM 139 CE LYS 13 2.285 -0.254 10.374 1.00 0.00 C ATOM 140 NZ LYS 13 1.549 0.599 11.353 1.00 0.00 N ATOM 146 N LYS 14 5.271 3.672 5.432 1.00 0.00 N ATOM 148 CA LYS 14 6.445 4.333 4.824 1.00 0.00 C ATOM 157 C LYS 14 6.271 5.517 3.849 1.00 0.00 C ATOM 158 O LYS 14 7.085 6.448 3.883 1.00 0.00 O ATOM 149 CB LYS 14 7.371 3.288 4.182 1.00 0.00 C ATOM 150 CG LYS 14 8.132 2.416 5.176 1.00 0.00 C ATOM 151 CD LYS 14 9.024 1.408 4.458 1.00 0.00 C ATOM 152 CE LYS 14 9.797 0.525 5.434 1.00 0.00 C ATOM 153 NZ LYS 14 8.930 -0.427 6.192 1.00 0.00 N ATOM 159 N PHE 15 5.218 5.498 3.015 1.00 0.00 N ATOM 161 CA PHE 15 4.991 6.536 1.983 1.00 0.00 C ATOM 169 C PHE 15 4.844 8.039 2.322 1.00 0.00 C ATOM 170 O PHE 15 5.453 8.873 1.642 1.00 0.00 O ATOM 162 CB PHE 15 3.930 6.085 0.934 1.00 0.00 C ATOM 163 CG PHE 15 2.483 5.873 1.451 1.00 0.00 C ATOM 164 CD1 PHE 15 1.897 6.645 2.490 1.00 0.00 C ATOM 165 CD2 PHE 15 1.665 4.937 0.791 1.00 0.00 C ATOM 166 CE1 PHE 15 0.532 6.488 2.853 1.00 0.00 C ATOM 167 CE2 PHE 15 0.296 4.766 1.139 1.00 0.00 C ATOM 168 CZ PHE 15 -0.271 5.546 2.174 1.00 0.00 C ATOM 171 N LYS 16 4.070 8.366 3.370 1.00 0.00 N ATOM 173 CA LYS 16 3.778 9.748 3.852 1.00 0.00 C ATOM 182 C LYS 16 3.297 10.753 2.773 1.00 0.00 C ATOM 183 O LYS 16 2.101 11.062 2.714 1.00 0.00 O ATOM 174 CB LYS 16 4.947 10.335 4.678 1.00 0.00 C ATOM 175 CG LYS 16 5.191 9.644 6.014 1.00 0.00 C ATOM 176 CD LYS 16 6.357 10.282 6.763 1.00 0.00 C ATOM 177 CE LYS 16 6.621 9.603 8.105 1.00 0.00 C ATOM 178 NZ LYS 16 5.541 9.830 9.112 1.00 0.00 N ATOM 184 N ASN 17 4.230 11.247 1.939 1.00 0.00 N ATOM 186 CA ASN 17 3.969 12.203 0.835 1.00 0.00 C ATOM 193 C ASN 17 4.944 11.962 -0.345 1.00 0.00 C ATOM 194 O ASN 17 6.011 12.592 -0.421 1.00 0.00 O ATOM 187 CB ASN 17 3.999 13.683 1.325 1.00 0.00 C ATOM 188 CG ASN 17 5.192 13.998 2.237 1.00 0.00 C ATOM 189 OD1 ASN 17 6.256 14.408 1.768 1.00 0.00 O ATOM 190 ND2 ASN 17 5.005 13.818 3.541 1.00 0.00 N ATOM 195 N CYS 18 4.589 11.015 -1.232 1.00 0.00 N ATOM 197 CA CYS 18 5.402 10.643 -2.409 1.00 0.00 C ATOM 200 C CYS 18 4.594 10.334 -3.681 1.00 0.00 C ATOM 201 O CYS 18 4.883 10.900 -4.743 1.00 0.00 O ATOM 198 CB CYS 18 6.327 9.450 -2.081 1.00 0.00 C ATOM 199 SG CYS 18 7.580 9.067 -3.335 1.00 0.00 S ATOM 202 N GLU 19 3.600 9.433 -3.566 1.00 0.00 N ATOM 204 CA GLU 19 2.694 8.945 -4.651 1.00 0.00 C ATOM 210 C GLU 19 3.457 8.189 -5.760 1.00 0.00 C ATOM 211 O GLU 19 4.446 8.708 -6.298 1.00 0.00 O ATOM 205 CB GLU 19 1.840 10.079 -5.264 1.00 0.00 C ATOM 206 CG GLU 19 1.003 10.869 -4.257 1.00 0.00 C ATOM 207 CD GLU 19 0.340 12.095 -4.863 1.00 0.00 C ATOM 208 OE1 GLU 19 1.057 13.033 -5.280 1.00 0.00 O ATOM 209 OE2 GLU 19 -0.904 12.135 -4.896 1.00 0.00 O ATOM 212 N VAL 20 3.002 6.966 -6.079 1.00 0.00 N ATOM 214 CA VAL 20 3.630 6.102 -7.107 1.00 0.00 C ATOM 218 C VAL 20 2.573 5.620 -8.126 1.00 0.00 C ATOM 219 O VAL 20 1.415 5.383 -7.765 1.00 0.00 O ATOM 215 CB VAL 20 4.374 4.828 -6.482 1.00 0.00 C ATOM 216 CG1 VAL 20 5.391 4.238 -7.476 1.00 0.00 C ATOM 217 CG2 VAL 20 5.084 5.175 -5.171 1.00 0.00 C ATOM 220 N ARG 21 2.994 5.511 -9.394 1.00 0.00 N ATOM 222 CA ARG 21 2.158 5.042 -10.513 1.00 0.00 C ATOM 235 C ARG 21 2.858 3.832 -11.154 1.00 0.00 C ATOM 236 O ARG 21 4.087 3.844 -11.311 1.00 0.00 O ATOM 223 CB ARG 21 1.970 6.143 -11.572 1.00 0.00 C ATOM 224 CG ARG 21 1.050 7.282 -11.162 1.00 0.00 C ATOM 225 CD ARG 21 0.931 8.311 -12.276 1.00 0.00 C ATOM 226 NE ARG 21 -0.005 9.387 -11.941 1.00 0.00 N ATOM 228 CZ ARG 21 -0.179 10.503 -12.650 1.00 0.00 C ATOM 229 NH1 ARG 21 -1.059 11.406 -12.242 1.00 0.00 N ATOM 232 NH2 ARG 21 0.515 10.728 -13.762 1.00 0.00 N ATOM 237 N CYS 22 2.082 2.790 -11.479 1.00 0.00 N ATOM 239 CA CYS 22 2.589 1.553 -12.107 1.00 0.00 C ATOM 242 C CYS 22 1.871 1.285 -13.435 1.00 0.00 C ATOM 243 O CYS 22 0.680 1.590 -13.567 1.00 0.00 O ATOM 240 CB CYS 22 2.412 0.349 -11.172 1.00 0.00 C ATOM 241 SG CYS 22 3.276 0.497 -9.590 1.00 0.00 S ATOM 244 N ASP 23 2.610 0.719 -14.409 1.00 0.00 N ATOM 246 CA ASP 23 2.148 0.358 -15.779 1.00 0.00 C ATOM 251 C ASP 23 1.512 1.478 -16.632 1.00 0.00 C ATOM 252 O ASP 23 0.885 2.396 -16.089 1.00 0.00 O ATOM 247 CB ASP 23 1.222 -0.881 -15.762 1.00 0.00 C ATOM 248 CG ASP 23 1.930 -2.146 -15.286 1.00 0.00 C ATOM 249 OD1 ASP 23 2.488 -2.877 -16.132 1.00 0.00 O ATOM 250 OD2 ASP 23 1.913 -2.418 -14.065 1.00 0.00 O ATOM 253 N GLU 24 1.681 1.381 -17.959 1.00 0.00 N ATOM 255 CA GLU 24 1.146 2.351 -18.935 1.00 0.00 C ATOM 261 C GLU 24 -0.150 1.842 -19.590 1.00 0.00 C ATOM 262 O GLU 24 -1.064 2.635 -19.849 1.00 0.00 O ATOM 256 CB GLU 24 2.188 2.663 -20.019 1.00 0.00 C ATOM 257 CG GLU 24 3.399 3.454 -19.532 1.00 0.00 C ATOM 258 CD GLU 24 4.399 3.737 -20.638 1.00 0.00 C ATOM 259 OE1 GLU 24 5.313 2.909 -20.841 1.00 0.00 O ATOM 260 OE2 GLU 24 4.273 4.786 -21.303 1.00 0.00 O ATOM 263 N SER 25 -0.208 0.527 -19.848 1.00 0.00 N ATOM 265 CA SER 25 -1.366 -0.148 -20.464 1.00 0.00 C ATOM 269 C SER 25 -1.986 -1.157 -19.488 1.00 0.00 C ATOM 270 O SER 25 -1.266 -1.768 -18.688 1.00 0.00 O ATOM 266 CB SER 25 -0.948 -0.867 -21.755 1.00 0.00 C ATOM 267 OG SER 25 -0.418 0.047 -22.702 1.00 0.00 O ATOM 271 N ASN 26 -3.320 -1.319 -19.565 1.00 0.00 N ATOM 273 CA ASN 26 -4.155 -2.232 -18.733 1.00 0.00 C ATOM 280 C ASN 26 -4.080 -2.049 -17.202 1.00 0.00 C ATOM 281 O ASN 26 -3.009 -1.746 -16.666 1.00 0.00 O ATOM 274 CB ASN 26 -3.920 -3.717 -19.096 1.00 0.00 C ATOM 275 CG ASN 26 -4.352 -4.054 -20.519 1.00 0.00 C ATOM 276 OD1 ASN 26 -3.558 -3.967 -21.458 1.00 0.00 O ATOM 277 ND2 ASN 26 -5.609 -4.457 -20.679 1.00 0.00 N ATOM 282 N HIS 27 -5.224 -2.270 -16.527 1.00 0.00 N ATOM 284 CA HIS 27 -5.442 -2.166 -15.055 1.00 0.00 C ATOM 292 C HIS 27 -4.721 -1.072 -14.229 1.00 0.00 C ATOM 293 O HIS 27 -5.383 -0.206 -13.648 1.00 0.00 O ATOM 294 CB HIS 27 -5.349 -3.556 -14.354 1.00 0.00 C ATOM 285 CG HIS 27 -4.068 -4.305 -14.603 1.00 0.00 C ATOM 287 ND1 HIS 27 -3.745 -4.845 -15.832 1.00 0.00 N ATOM 286 CD2 HIS 27 -3.042 -4.620 -13.776 1.00 0.00 C ATOM 289 CE1 HIS 27 -2.578 -5.458 -15.750 1.00 0.00 C ATOM 290 NE2 HIS 27 -2.130 -5.336 -14.514 1.00 0.00 N ATOM 295 N CYS 28 -3.376 -1.126 -14.193 1.00 0.00 N ATOM 297 CA CYS 28 -2.469 -0.191 -13.470 1.00 0.00 C ATOM 300 C CYS 28 -2.659 -0.096 -11.942 1.00 0.00 C ATOM 301 O CYS 28 -3.798 -0.074 -11.457 1.00 0.00 O ATOM 298 CB CYS 28 -2.486 1.218 -14.092 1.00 0.00 C ATOM 299 SG CYS 28 -1.966 1.277 -15.824 1.00 0.00 S ATOM 302 N VAL 29 -1.537 -0.044 -11.208 1.00 0.00 N ATOM 304 CA VAL 29 -1.514 0.048 -9.732 1.00 0.00 C ATOM 308 C VAL 29 -1.014 1.451 -9.317 1.00 0.00 C ATOM 309 O VAL 29 -0.047 1.968 -9.893 1.00 0.00 O ATOM 305 CB VAL 29 -0.611 -1.081 -9.073 1.00 0.00 C ATOM 306 CG1 VAL 29 -0.952 -1.266 -7.583 1.00 0.00 C ATOM 307 CG2 VAL 29 -0.780 -2.412 -9.806 1.00 0.00 C ATOM 310 N GLU 30 -1.718 2.064 -8.355 1.00 0.00 N ATOM 312 CA GLU 30 -1.397 3.399 -7.820 1.00 0.00 C ATOM 318 C GLU 30 -1.292 3.347 -6.294 1.00 0.00 C ATOM 319 O GLU 30 -2.116 2.701 -5.632 1.00 0.00 O ATOM 313 CB GLU 30 -2.459 4.437 -8.231 1.00 0.00 C ATOM 314 CG GLU 30 -2.471 4.790 -9.717 1.00 0.00 C ATOM 315 CD GLU 30 -3.533 5.815 -10.068 1.00 0.00 C ATOM 316 OE1 GLU 30 -4.670 5.410 -10.392 1.00 0.00 O ATOM 317 OE2 GLU 30 -3.230 7.026 -10.022 1.00 0.00 O ATOM 320 N VAL 31 -0.247 3.995 -5.757 1.00 0.00 N ATOM 322 CA VAL 31 0.012 4.099 -4.305 1.00 0.00 C ATOM 326 C VAL 31 -0.253 5.602 -4.074 1.00 0.00 C ATOM 327 O VAL 31 0.294 6.459 -4.785 1.00 0.00 O ATOM 323 CB VAL 31 1.497 3.699 -3.928 1.00 0.00 C ATOM 324 CG1 VAL 31 1.628 3.432 -2.426 1.00 0.00 C ATOM 325 CG2 VAL 31 1.940 2.457 -4.705 1.00 0.00 C ATOM 328 N ARG 32 -1.116 5.895 -3.098 1.00 0.00 N ATOM 330 CA ARG 32 -1.531 7.263 -2.758 1.00 0.00 C ATOM 343 C ARG 32 -0.969 7.691 -1.390 1.00 0.00 C ATOM 344 O ARG 32 -1.139 6.968 -0.402 1.00 0.00 O ATOM 331 CB ARG 32 -3.074 7.370 -2.817 1.00 0.00 C ATOM 332 CG ARG 32 -3.886 6.207 -2.187 1.00 0.00 C ATOM 333 CD ARG 32 -5.375 6.291 -2.509 1.00 0.00 C ATOM 334 NE ARG 32 -6.046 7.411 -1.843 1.00 0.00 N ATOM 336 CZ ARG 32 -7.333 7.728 -1.986 1.00 0.00 C ATOM 337 NH1 ARG 32 -7.826 8.768 -1.328 1.00 0.00 N ATOM 340 NH2 ARG 32 -8.134 7.020 -2.777 1.00 0.00 N ATOM 345 N CYS 33 -0.312 8.861 -1.348 1.00 0.00 N ATOM 347 CA CYS 33 0.331 9.378 -0.125 1.00 0.00 C ATOM 350 C CYS 33 -0.003 10.818 0.309 1.00 0.00 C ATOM 351 O CYS 33 -0.322 11.037 1.484 1.00 0.00 O ATOM 348 CB CYS 33 1.853 9.227 -0.242 1.00 0.00 C ATOM 349 SG CYS 33 2.371 7.849 -1.288 1.00 0.00 S ATOM 352 N SER 34 0.065 11.780 -0.625 1.00 0.00 N ATOM 354 CA SER 34 -0.190 13.207 -0.337 1.00 0.00 C ATOM 358 C SER 34 -1.638 13.736 -0.504 1.00 0.00 C ATOM 359 O SER 34 -2.537 13.254 0.194 1.00 0.00 O ATOM 355 CB SER 34 0.840 14.088 -1.068 1.00 0.00 C ATOM 356 OG SER 34 0.763 13.926 -2.472 1.00 0.00 O ATOM 360 N ASP 35 -1.854 14.712 -1.403 1.00 0.00 N ATOM 362 CA ASP 35 -3.171 15.336 -1.632 1.00 0.00 C ATOM 367 C ASP 35 -3.859 15.038 -2.975 1.00 0.00 C ATOM 368 O ASP 35 -5.088 14.894 -3.010 1.00 0.00 O ATOM 363 CB ASP 35 -3.082 16.863 -1.441 1.00 0.00 C ATOM 364 CG ASP 35 -2.766 17.264 -0.003 1.00 0.00 C ATOM 365 OD1 ASP 35 -1.568 17.392 0.336 1.00 0.00 O ATOM 366 OD2 ASP 35 -3.716 17.472 0.784 1.00 0.00 O ATOM 369 N THR 36 -3.076 14.934 -4.060 1.00 0.00 N ATOM 371 CA THR 36 -3.591 14.680 -5.428 1.00 0.00 C ATOM 376 C THR 36 -4.208 13.286 -5.691 1.00 0.00 C ATOM 377 O THR 36 -5.198 13.182 -6.429 1.00 0.00 O ATOM 372 CB THR 36 -2.522 15.004 -6.515 1.00 0.00 C ATOM 373 OG1 THR 36 -1.274 14.393 -6.168 1.00 0.00 O ATOM 375 CG2 THR 36 -2.332 16.509 -6.653 1.00 0.00 C ATOM 378 N LYS 37 -3.642 12.242 -5.066 1.00 0.00 N ATOM 380 CA LYS 37 -4.121 10.851 -5.202 1.00 0.00 C ATOM 389 C LYS 37 -4.753 10.372 -3.886 1.00 0.00 C ATOM 390 O LYS 37 -5.723 9.603 -3.908 1.00 0.00 O ATOM 381 CB LYS 37 -2.982 9.903 -5.608 1.00 0.00 C ATOM 382 CG LYS 37 -2.402 10.162 -6.992 1.00 0.00 C ATOM 383 CD LYS 37 -1.243 9.220 -7.287 1.00 0.00 C ATOM 384 CE LYS 37 -0.570 9.542 -8.617 1.00 0.00 C ATOM 385 NZ LYS 37 0.176 10.836 -8.613 1.00 0.00 N ATOM 391 N TYR 38 -4.198 10.838 -2.758 1.00 0.00 N ATOM 393 CA TYR 38 -4.663 10.498 -1.399 1.00 0.00 C ATOM 403 C TYR 38 -5.544 11.635 -0.835 1.00 0.00 C ATOM 404 O TYR 38 -5.271 12.814 -1.092 1.00 0.00 O ATOM 394 CB TYR 38 -3.457 10.231 -0.461 1.00 0.00 C ATOM 395 CG TYR 38 -3.737 9.512 0.871 1.00 0.00 C ATOM 396 CD1 TYR 38 -3.994 10.245 2.057 1.00 0.00 C ATOM 398 CD2 TYR 38 -3.713 8.098 0.961 1.00 0.00 C ATOM 397 CE1 TYR 38 -4.220 9.587 3.298 1.00 0.00 C ATOM 399 CE2 TYR 38 -3.938 7.432 2.198 1.00 0.00 C ATOM 400 CZ TYR 38 -4.191 8.185 3.356 1.00 0.00 C ATOM 401 OH TYR 38 -4.410 7.541 4.553 1.00 0.00 O ATOM 405 N THR 39 -6.598 11.262 -0.094 1.00 0.00 N ATOM 407 CA THR 39 -7.548 12.207 0.530 1.00 0.00 C ATOM 412 C THR 39 -7.394 12.238 2.064 1.00 0.00 C ATOM 413 O THR 39 -7.121 11.199 2.683 1.00 0.00 O ATOM 408 CB THR 39 -9.035 11.876 0.161 1.00 0.00 C ATOM 409 OG1 THR 39 -9.317 10.500 0.455 1.00 0.00 O ATOM 411 CG2 THR 39 -9.303 12.149 -1.315 1.00 0.00 C ATOM 414 N LEU 40 -7.532 13.437 2.648 1.00 0.00 N ATOM 416 CA LEU 40 -7.420 13.667 4.102 1.00 0.00 C ATOM 421 C LEU 40 -8.780 14.018 4.723 1.00 0.00 C ATOM 422 O LEU 40 -9.057 13.638 5.867 1.00 0.00 O ATOM 417 CB LEU 40 -6.407 14.795 4.404 1.00 0.00 C ATOM 418 CG LEU 40 -4.900 14.619 4.138 1.00 0.00 C ATOM 419 CD1 LEU 40 -4.357 15.880 3.482 1.00 0.00 C ATOM 420 CD2 LEU 40 -4.120 14.306 5.425 1.00 0.00 C ATOM 423 N CYS 41 -9.622 14.730 3.949 1.00 0.00 N ATOM 425 CA CYS 41 -10.990 15.196 4.311 1.00 0.00 C ATOM 428 C CYS 41 -11.088 16.118 5.537 1.00 0.00 C ATOM 429 O CYS 41 -11.850 17.105 5.459 1.00 0.00 O ATOM 426 CB CYS 41 -11.979 14.015 4.440 1.00 0.00 C ATOM 427 SG CYS 41 -13.729 14.473 4.585 1.00 0.00 S TER END