####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS041_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 3 - 41 4.94 5.39 LCS_AVERAGE: 94.77 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 1.48 7.62 LCS_AVERAGE: 39.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 0.90 8.43 LCS_AVERAGE: 25.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 19 34 3 3 11 19 21 21 21 22 22 23 26 28 30 34 37 39 40 40 41 41 LCS_GDT Q 2 Q 2 16 19 38 9 12 15 17 21 21 21 22 22 23 26 27 28 32 35 39 40 40 41 41 LCS_GDT E 3 E 3 16 19 39 8 12 15 19 21 21 21 22 22 24 26 28 33 35 38 39 40 40 41 41 LCS_GDT T 4 T 4 16 19 39 9 12 15 19 21 21 21 22 22 24 26 30 33 37 38 39 40 40 41 41 LCS_GDT R 5 R 5 16 19 39 9 12 15 19 21 21 21 22 22 24 26 31 34 37 38 39 40 40 41 41 LCS_GDT K 6 K 6 16 19 39 9 12 15 19 21 21 21 22 22 24 26 31 34 37 38 39 40 40 41 41 LCS_GDT K 7 K 7 16 19 39 9 12 15 19 21 21 21 22 22 24 28 31 34 37 38 39 40 40 41 41 LCS_GDT C 8 C 8 16 19 39 9 12 15 19 21 21 21 22 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT T 9 T 9 16 19 39 9 12 15 19 21 21 21 22 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT E 10 E 10 16 19 39 9 12 15 19 21 21 21 22 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT M 11 M 11 16 19 39 9 12 15 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT K 12 K 12 16 19 39 9 12 15 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT K 13 K 13 16 19 39 8 12 15 19 21 21 21 22 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT K 14 K 14 16 19 39 8 12 15 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT F 15 F 15 16 19 39 5 12 15 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT K 16 K 16 16 19 39 3 5 15 19 21 21 21 22 23 27 30 33 34 37 38 39 40 40 41 41 LCS_GDT N 17 N 17 16 19 39 3 12 15 19 21 21 21 22 23 27 28 31 34 37 38 39 40 40 41 41 LCS_GDT C 18 C 18 7 19 39 3 6 8 11 21 21 21 22 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT E 19 E 19 7 19 39 3 6 11 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT V 20 V 20 7 18 39 3 6 8 10 13 17 18 20 23 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT R 21 R 21 7 14 39 4 6 8 10 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT C 22 C 22 7 14 39 4 6 8 8 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT D 23 D 23 7 14 39 4 5 8 10 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT E 24 E 24 7 14 39 4 5 8 10 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT S 25 S 25 4 14 39 3 4 7 10 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT N 26 N 26 9 14 39 4 6 9 11 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT H 27 H 27 9 14 39 4 6 9 11 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT C 28 C 28 9 14 39 4 6 9 11 13 17 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT V 29 V 29 9 14 39 4 6 9 11 13 17 18 21 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT E 30 E 30 9 14 39 4 6 9 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT V 31 V 31 9 14 39 4 6 13 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT R 32 R 32 9 14 39 4 6 9 11 13 15 16 18 22 26 31 33 34 37 38 39 40 40 41 41 LCS_GDT C 33 C 33 9 14 39 4 6 9 11 13 15 16 19 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT S 34 S 34 9 14 39 4 6 9 11 13 15 16 19 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT D 35 D 35 9 14 39 4 6 9 11 13 15 16 19 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT T 36 T 36 5 14 39 3 4 6 8 11 14 16 18 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT K 37 K 37 5 14 39 4 5 6 9 13 15 16 22 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT Y 38 Y 38 5 14 39 4 5 6 9 13 15 17 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT T 39 T 39 5 11 39 4 5 6 9 10 12 18 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT L 40 L 40 5 11 39 4 5 6 9 10 15 16 20 24 27 31 33 34 37 38 39 40 40 41 41 LCS_GDT C 41 C 41 5 11 39 3 5 6 9 10 12 14 18 20 24 28 33 33 35 37 37 38 39 41 41 LCS_AVERAGE LCS_A: 53.32 ( 25.70 39.50 94.77 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 15 19 21 21 21 22 24 27 31 33 34 37 38 39 40 40 41 41 GDT PERCENT_AT 21.95 29.27 36.59 46.34 51.22 51.22 51.22 53.66 58.54 65.85 75.61 80.49 82.93 90.24 92.68 95.12 97.56 97.56 100.00 100.00 GDT RMS_LOCAL 0.29 0.49 0.80 1.45 1.57 1.57 1.57 2.05 3.33 3.43 3.90 4.07 4.24 4.65 4.81 5.04 5.14 5.14 5.30 5.30 GDT RMS_ALL_AT 9.01 8.59 8.47 7.43 7.46 7.46 7.46 7.19 6.84 6.01 6.10 6.19 5.84 5.43 5.35 5.33 5.31 5.31 5.30 5.30 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.976 0 0.643 0.938 5.169 42.727 33.030 5.169 LGA Q 2 Q 2 2.184 0 0.228 0.915 6.230 51.364 28.485 6.230 LGA E 3 E 3 1.703 0 0.075 1.217 7.296 50.909 28.687 4.602 LGA T 4 T 4 1.819 0 0.037 0.051 2.157 50.909 45.455 2.157 LGA R 5 R 5 1.335 0 0.047 1.040 2.517 73.636 63.967 2.517 LGA K 6 K 6 0.754 0 0.034 1.220 7.574 81.818 45.657 7.574 LGA K 7 K 7 1.410 0 0.028 0.641 4.099 65.455 37.172 4.099 LGA C 8 C 8 1.537 0 0.035 0.046 2.604 61.818 54.242 2.604 LGA T 9 T 9 1.106 0 0.023 0.144 2.311 73.636 66.234 1.486 LGA E 10 E 10 0.934 0 0.012 0.763 5.471 81.818 46.667 5.471 LGA M 11 M 11 0.965 0 0.060 0.158 1.935 81.818 66.364 1.843 LGA K 12 K 12 1.706 0 0.051 0.823 7.137 51.364 32.121 7.137 LGA K 13 K 13 2.249 0 0.035 0.581 5.067 44.545 24.242 4.207 LGA K 14 K 14 1.767 0 0.067 0.644 4.266 58.182 36.970 3.997 LGA F 15 F 15 1.653 0 0.478 1.248 6.887 40.000 29.256 6.887 LGA K 16 K 16 1.780 0 0.502 1.055 4.285 40.000 38.990 3.835 LGA N 17 N 17 1.936 0 0.187 0.951 6.802 54.545 32.500 6.802 LGA C 18 C 18 2.421 0 0.031 0.045 4.813 30.455 21.515 4.813 LGA E 19 E 19 2.417 0 0.176 0.970 5.060 20.455 26.869 3.025 LGA V 20 V 20 7.065 0 0.152 0.408 10.630 0.000 0.000 10.630 LGA R 21 R 21 7.876 0 0.073 1.048 9.667 0.000 0.000 6.555 LGA C 22 C 22 11.187 0 0.608 0.762 12.075 0.000 0.000 11.573 LGA D 23 D 23 10.479 0 0.051 0.145 12.177 0.000 0.000 8.647 LGA E 24 E 24 12.795 0 0.113 0.121 16.715 0.000 0.000 16.715 LGA S 25 S 25 13.751 0 0.588 0.917 15.047 0.000 0.000 15.047 LGA N 26 N 26 12.248 0 0.622 0.836 12.894 0.000 0.000 12.753 LGA H 27 H 27 12.725 0 0.171 0.856 15.464 0.000 0.000 15.029 LGA C 28 C 28 8.979 0 0.089 0.708 10.205 0.000 0.000 8.857 LGA V 29 V 29 5.954 0 0.128 1.042 7.675 1.818 1.039 7.675 LGA E 30 E 30 1.170 0 0.072 0.107 4.227 60.909 44.242 4.227 LGA V 31 V 31 1.190 0 0.035 0.992 3.464 48.182 60.260 0.999 LGA R 32 R 32 5.305 0 0.183 1.012 7.256 2.727 0.992 7.256 LGA C 33 C 33 6.956 0 0.072 0.824 8.488 0.000 0.000 7.549 LGA S 34 S 34 9.590 0 0.054 0.629 10.446 0.000 0.000 9.465 LGA D 35 D 35 10.755 0 0.637 1.068 15.619 0.000 0.000 15.619 LGA T 36 T 36 8.838 0 0.199 0.927 12.084 0.000 0.000 9.252 LGA K 37 K 37 5.690 0 0.092 1.542 8.885 0.000 0.202 8.885 LGA Y 38 Y 38 7.629 0 0.039 1.217 7.637 0.000 0.000 5.649 LGA T 39 T 39 10.420 0 0.147 0.974 13.759 0.000 0.000 12.919 LGA L 40 L 40 10.895 0 0.613 0.658 14.505 0.000 0.227 4.861 LGA C 41 C 41 15.881 1 0.479 0.569 17.648 0.000 0.000 17.648 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 5.295 5.277 5.867 28.514 21.107 8.603 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 22 2.05 56.098 53.146 1.025 LGA_LOCAL RMSD: 2.047 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.191 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.295 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.545186 * X + -0.452327 * Y + -0.705813 * Z + -0.451126 Y_new = 0.590250 * X + -0.804990 * Y + 0.059964 * Z + 1.825996 Z_new = -0.595296 * X + -0.383915 * Y + 0.705856 * Z + -1.900509 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.316527 0.637634 -0.498147 [DEG: 132.7272 36.5337 -28.5417 ] ZXZ: -1.655550 0.787166 -2.143588 [DEG: -94.8560 45.1013 -122.8185 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS041_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS041_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 22 2.05 53.146 5.30 REMARK ---------------------------------------------------------- MOLECULE T0955TS041_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT N/A ATOM 8 N SER 1 -0.862 -15.115 -0.732 1.00 0.00 N ATOM 10 CA SER 1 -1.789 -14.080 -0.192 1.00 0.00 C ATOM 4 C SER 1 -1.110 -13.307 0.950 1.00 0.00 C ATOM 5 O SER 1 -1.366 -12.110 1.124 1.00 0.00 O ATOM 1 CB SER 1 -3.082 -14.739 0.306 1.00 0.00 C ATOM 2 OG SER 1 -4.063 -13.775 0.657 1.00 0.00 O ATOM 11 N GLN 2 -0.256 -14.004 1.714 1.00 0.00 N ATOM 13 CA GLN 2 0.501 -13.451 2.860 1.00 0.00 C ATOM 21 C GLN 2 1.593 -12.438 2.472 1.00 0.00 C ATOM 22 O GLN 2 1.783 -11.436 3.173 1.00 0.00 O ATOM 14 CB GLN 2 1.119 -14.581 3.696 1.00 0.00 C ATOM 15 CG GLN 2 0.112 -15.435 4.460 1.00 0.00 C ATOM 16 CD GLN 2 0.775 -16.534 5.268 1.00 0.00 C ATOM 17 OE1 GLN 2 0.962 -17.650 4.783 1.00 0.00 O ATOM 18 NE2 GLN 2 1.135 -16.224 6.509 1.00 0.00 N ATOM 23 N GLU 3 2.271 -12.695 1.343 1.00 0.00 N ATOM 25 CA GLU 3 3.360 -11.848 0.807 1.00 0.00 C ATOM 31 C GLU 3 2.888 -10.464 0.327 1.00 0.00 C ATOM 32 O GLU 3 3.529 -9.453 0.640 1.00 0.00 O ATOM 26 CB GLU 3 4.101 -12.571 -0.329 1.00 0.00 C ATOM 27 CG GLU 3 4.925 -13.778 0.111 1.00 0.00 C ATOM 28 CD GLU 3 5.637 -14.456 -1.046 1.00 0.00 C ATOM 29 OE1 GLU 3 5.047 -15.373 -1.654 1.00 0.00 O ATOM 30 OE2 GLU 3 6.787 -14.072 -1.345 1.00 0.00 O ATOM 33 N THR 4 1.757 -10.432 -0.395 1.00 0.00 N ATOM 35 CA THR 4 1.146 -9.193 -0.927 1.00 0.00 C ATOM 40 C THR 4 0.589 -8.291 0.203 1.00 0.00 C ATOM 41 O THR 4 0.716 -7.060 0.138 1.00 0.00 O ATOM 36 CB THR 4 0.066 -9.497 -2.047 1.00 0.00 C ATOM 37 OG1 THR 4 -0.574 -8.280 -2.458 1.00 0.00 O ATOM 39 CG2 THR 4 -0.996 -10.519 -1.584 1.00 0.00 C ATOM 42 N ARG 5 0.014 -8.930 1.235 1.00 0.00 N ATOM 44 CA ARG 5 -0.557 -8.258 2.422 1.00 0.00 C ATOM 57 C ARG 5 0.530 -7.609 3.297 1.00 0.00 C ATOM 58 O ARG 5 0.375 -6.459 3.722 1.00 0.00 O ATOM 45 CB ARG 5 -1.395 -9.236 3.257 1.00 0.00 C ATOM 46 CG ARG 5 -2.734 -9.615 2.636 1.00 0.00 C ATOM 47 CD ARG 5 -3.502 -10.580 3.525 1.00 0.00 C ATOM 48 NE ARG 5 -4.793 -10.955 2.944 1.00 0.00 N ATOM 50 CZ ARG 5 -5.685 -11.768 3.513 1.00 0.00 C ATOM 51 NH1 ARG 5 -6.822 -12.032 2.885 1.00 0.00 N ATOM 54 NH2 ARG 5 -5.454 -12.320 4.701 1.00 0.00 N ATOM 59 N LYS 6 1.638 -8.338 3.512 1.00 0.00 N ATOM 61 CA LYS 6 2.795 -7.879 4.310 1.00 0.00 C ATOM 70 C LYS 6 3.546 -6.723 3.628 1.00 0.00 C ATOM 71 O LYS 6 3.929 -5.755 4.295 1.00 0.00 O ATOM 62 CB LYS 6 3.759 -9.038 4.598 1.00 0.00 C ATOM 63 CG LYS 6 3.266 -10.026 5.648 1.00 0.00 C ATOM 64 CD LYS 6 4.277 -11.138 5.878 1.00 0.00 C ATOM 65 CE LYS 6 3.786 -12.122 6.928 1.00 0.00 C ATOM 66 NZ LYS 6 4.766 -13.217 7.165 1.00 0.00 N ATOM 72 N LYS 7 3.711 -6.821 2.299 1.00 0.00 N ATOM 74 CA LYS 7 4.385 -5.802 1.467 1.00 0.00 C ATOM 83 C LYS 7 3.566 -4.501 1.392 1.00 0.00 C ATOM 84 O LYS 7 4.140 -3.407 1.411 1.00 0.00 O ATOM 75 CB LYS 7 4.656 -6.334 0.053 1.00 0.00 C ATOM 76 CG LYS 7 5.814 -7.320 -0.038 1.00 0.00 C ATOM 77 CD LYS 7 6.020 -7.799 -1.466 1.00 0.00 C ATOM 78 CE LYS 7 7.177 -8.782 -1.556 1.00 0.00 C ATOM 79 NZ LYS 7 7.390 -9.261 -2.950 1.00 0.00 N ATOM 85 N CYS 8 2.233 -4.643 1.337 1.00 0.00 N ATOM 87 CA CYS 8 1.272 -3.522 1.280 1.00 0.00 C ATOM 90 C CYS 8 1.246 -2.727 2.600 1.00 0.00 C ATOM 91 O CYS 8 1.254 -1.491 2.574 1.00 0.00 O ATOM 88 CB CYS 8 -0.134 -4.041 0.943 1.00 0.00 C ATOM 89 SG CYS 8 -1.370 -2.762 0.599 1.00 0.00 S ATOM 92 N THR 9 1.260 -3.445 3.737 1.00 0.00 N ATOM 94 CA THR 9 1.253 -2.855 5.094 1.00 0.00 C ATOM 99 C THR 9 2.591 -2.125 5.374 1.00 0.00 C ATOM 100 O THR 9 2.588 -1.044 5.977 1.00 0.00 O ATOM 95 CB THR 9 0.969 -3.939 6.190 1.00 0.00 C ATOM 96 OG1 THR 9 -0.012 -4.861 5.700 1.00 0.00 O ATOM 98 CG2 THR 9 0.412 -3.301 7.478 1.00 0.00 C ATOM 101 N GLU 10 3.704 -2.706 4.897 1.00 0.00 N ATOM 103 CA GLU 10 5.063 -2.144 5.053 1.00 0.00 C ATOM 109 C GLU 10 5.251 -0.850 4.242 1.00 0.00 C ATOM 110 O GLU 10 5.825 0.117 4.751 1.00 0.00 O ATOM 104 CB GLU 10 6.133 -3.172 4.664 1.00 0.00 C ATOM 105 CG GLU 10 6.372 -4.260 5.707 1.00 0.00 C ATOM 106 CD GLU 10 7.435 -5.256 5.282 1.00 0.00 C ATOM 107 OE1 GLU 10 8.624 -5.025 5.589 1.00 0.00 O ATOM 108 OE2 GLU 10 7.082 -6.270 4.645 1.00 0.00 O ATOM 111 N MET 11 4.737 -0.841 3.001 1.00 0.00 N ATOM 113 CA MET 11 4.801 0.316 2.083 1.00 0.00 C ATOM 117 C MET 11 3.929 1.487 2.569 1.00 0.00 C ATOM 118 O MET 11 4.343 2.648 2.469 1.00 0.00 O ATOM 119 CB MET 11 4.390 -0.090 0.658 1.00 0.00 C ATOM 114 CG MET 11 5.427 -0.910 -0.120 1.00 0.00 C ATOM 115 SD MET 11 6.862 0.026 -0.714 1.00 0.00 S ATOM 116 CE MET 11 8.136 -0.533 0.421 1.00 0.00 C ATOM 120 N LYS 12 2.752 1.158 3.129 1.00 0.00 N ATOM 122 CA LYS 12 1.783 2.134 3.671 1.00 0.00 C ATOM 131 C LYS 12 2.319 2.844 4.927 1.00 0.00 C ATOM 132 O LYS 12 2.160 4.062 5.064 1.00 0.00 O ATOM 123 CB LYS 12 0.435 1.468 3.975 1.00 0.00 C ATOM 124 CG LYS 12 -0.425 1.198 2.748 1.00 0.00 C ATOM 125 CD LYS 12 -1.746 0.541 3.133 1.00 0.00 C ATOM 126 CE LYS 12 -2.615 0.230 1.916 1.00 0.00 C ATOM 127 NZ LYS 12 -3.139 1.447 1.227 1.00 0.00 N ATOM 133 N LYS 13 2.939 2.068 5.830 1.00 0.00 N ATOM 135 CA LYS 13 3.545 2.561 7.083 1.00 0.00 C ATOM 144 C LYS 13 4.821 3.400 6.865 1.00 0.00 C ATOM 145 O LYS 13 4.992 4.442 7.505 1.00 0.00 O ATOM 136 CB LYS 13 3.842 1.397 8.041 1.00 0.00 C ATOM 137 CG LYS 13 2.607 0.756 8.666 1.00 0.00 C ATOM 138 CD LYS 13 2.988 -0.384 9.596 1.00 0.00 C ATOM 139 CE LYS 13 1.758 -1.023 10.218 1.00 0.00 C ATOM 140 NZ LYS 13 2.115 -2.144 11.131 1.00 0.00 N ATOM 146 N LYS 14 5.694 2.930 5.960 1.00 0.00 N ATOM 148 CA LYS 14 6.978 3.576 5.609 1.00 0.00 C ATOM 157 C LYS 14 6.935 4.911 4.839 1.00 0.00 C ATOM 158 O LYS 14 7.657 5.844 5.206 1.00 0.00 O ATOM 149 CB LYS 14 7.899 2.590 4.877 1.00 0.00 C ATOM 150 CG LYS 14 8.526 1.527 5.771 1.00 0.00 C ATOM 151 CD LYS 14 9.423 0.588 4.970 1.00 0.00 C ATOM 152 CE LYS 14 10.061 -0.486 5.847 1.00 0.00 C ATOM 153 NZ LYS 14 11.075 0.050 6.805 1.00 0.00 N ATOM 159 N PHE 15 6.099 4.997 3.792 1.00 0.00 N ATOM 161 CA PHE 15 5.962 6.205 2.945 1.00 0.00 C ATOM 169 C PHE 15 5.315 7.426 3.647 1.00 0.00 C ATOM 170 O PHE 15 5.824 8.547 3.536 1.00 0.00 O ATOM 162 CB PHE 15 5.258 5.840 1.599 1.00 0.00 C ATOM 163 CG PHE 15 3.755 6.127 1.542 1.00 0.00 C ATOM 164 CD1 PHE 15 3.272 7.164 0.720 1.00 0.00 C ATOM 165 CD2 PHE 15 2.825 5.376 2.299 1.00 0.00 C ATOM 166 CE1 PHE 15 1.890 7.456 0.649 1.00 0.00 C ATOM 167 CE2 PHE 15 1.437 5.657 2.240 1.00 0.00 C ATOM 168 CZ PHE 15 0.970 6.701 1.412 1.00 0.00 C ATOM 171 N LYS 16 4.213 7.165 4.376 1.00 0.00 N ATOM 173 CA LYS 16 3.383 8.132 5.146 1.00 0.00 C ATOM 182 C LYS 16 3.348 9.633 4.741 1.00 0.00 C ATOM 183 O LYS 16 4.136 10.443 5.253 1.00 0.00 O ATOM 174 CB LYS 16 3.577 7.949 6.679 1.00 0.00 C ATOM 175 CG LYS 16 5.024 7.980 7.212 1.00 0.00 C ATOM 176 CD LYS 16 5.061 7.790 8.724 1.00 0.00 C ATOM 177 CE LYS 16 6.486 7.815 9.274 1.00 0.00 C ATOM 178 NZ LYS 16 7.136 9.158 9.187 1.00 0.00 N ATOM 184 N ASN 17 2.467 9.965 3.783 1.00 0.00 N ATOM 186 CA ASN 17 2.277 11.341 3.264 1.00 0.00 C ATOM 193 C ASN 17 0.875 11.646 2.687 1.00 0.00 C ATOM 194 O ASN 17 0.155 12.479 3.251 1.00 0.00 O ATOM 187 CB ASN 17 3.380 11.736 2.239 1.00 0.00 C ATOM 188 CG ASN 17 3.706 10.623 1.239 1.00 0.00 C ATOM 189 OD1 ASN 17 2.944 10.363 0.306 1.00 0.00 O ATOM 190 ND2 ASN 17 4.843 9.965 1.437 1.00 0.00 N ATOM 195 N CYS 18 0.503 10.974 1.583 1.00 0.00 N ATOM 197 CA CYS 18 -0.791 11.172 0.887 1.00 0.00 C ATOM 200 C CYS 18 -1.435 9.876 0.356 1.00 0.00 C ATOM 201 O CYS 18 -0.725 8.905 0.082 1.00 0.00 O ATOM 198 CB CYS 18 -0.605 12.154 -0.283 1.00 0.00 C ATOM 199 SG CYS 18 -0.005 13.788 0.203 1.00 0.00 S ATOM 202 N GLU 19 -2.771 9.885 0.187 1.00 0.00 N ATOM 204 CA GLU 19 -3.548 8.731 -0.328 1.00 0.00 C ATOM 210 C GLU 19 -3.810 8.851 -1.847 1.00 0.00 C ATOM 211 O GLU 19 -4.379 9.849 -2.304 1.00 0.00 O ATOM 205 CB GLU 19 -4.908 8.605 0.389 1.00 0.00 C ATOM 206 CG GLU 19 -4.872 8.463 1.909 1.00 0.00 C ATOM 207 CD GLU 19 -6.214 8.050 2.497 1.00 0.00 C ATOM 208 OE1 GLU 19 -6.323 6.899 2.968 1.00 0.00 O ATOM 209 OE2 GLU 19 -7.159 8.870 2.497 1.00 0.00 O ATOM 212 N VAL 20 -3.452 7.799 -2.600 1.00 0.00 N ATOM 214 CA VAL 20 -3.624 7.722 -4.069 1.00 0.00 C ATOM 218 C VAL 20 -4.443 6.447 -4.353 1.00 0.00 C ATOM 219 O VAL 20 -4.278 5.440 -3.654 1.00 0.00 O ATOM 215 CB VAL 20 -2.250 7.625 -4.859 1.00 0.00 C ATOM 216 CG1 VAL 20 -2.353 8.335 -6.216 1.00 0.00 C ATOM 217 CG2 VAL 20 -1.097 8.191 -4.051 1.00 0.00 C ATOM 220 N ARG 21 -5.311 6.511 -5.371 1.00 0.00 N ATOM 222 CA ARG 21 -6.182 5.396 -5.791 1.00 0.00 C ATOM 235 C ARG 21 -5.763 4.852 -7.166 1.00 0.00 C ATOM 236 O ARG 21 -5.303 5.620 -8.019 1.00 0.00 O ATOM 223 CB ARG 21 -7.655 5.836 -5.838 1.00 0.00 C ATOM 224 CG ARG 21 -8.279 6.133 -4.472 1.00 0.00 C ATOM 225 CD ARG 21 -9.741 6.562 -4.585 1.00 0.00 C ATOM 226 NE ARG 21 -10.626 5.470 -5.000 1.00 0.00 N ATOM 228 CZ ARG 21 -11.944 5.573 -5.174 1.00 0.00 C ATOM 229 NH1 ARG 21 -12.638 4.508 -5.554 1.00 0.00 N ATOM 232 NH2 ARG 21 -12.578 6.724 -4.973 1.00 0.00 N ATOM 237 N CYS 22 -5.908 3.531 -7.353 1.00 0.00 N ATOM 239 CA CYS 22 -5.545 2.834 -8.601 1.00 0.00 C ATOM 242 C CYS 22 -6.749 2.327 -9.412 1.00 0.00 C ATOM 243 O CYS 22 -6.802 2.532 -10.630 1.00 0.00 O ATOM 240 CB CYS 22 -4.598 1.660 -8.306 1.00 0.00 C ATOM 241 SG CYS 22 -5.314 0.299 -7.338 1.00 0.00 S ATOM 244 N ASP 23 -7.704 1.670 -8.727 1.00 0.00 N ATOM 246 CA ASP 23 -8.941 1.071 -9.299 1.00 0.00 C ATOM 251 C ASP 23 -8.669 -0.086 -10.292 1.00 0.00 C ATOM 252 O ASP 23 -7.524 -0.546 -10.389 1.00 0.00 O ATOM 247 CB ASP 23 -9.876 2.145 -9.919 1.00 0.00 C ATOM 248 CG ASP 23 -10.407 3.136 -8.890 1.00 0.00 C ATOM 249 OD1 ASP 23 -9.754 4.179 -8.669 1.00 0.00 O ATOM 250 OD2 ASP 23 -11.487 2.880 -8.313 1.00 0.00 O ATOM 253 N GLU 24 -9.708 -0.542 -11.009 1.00 0.00 N ATOM 255 CA GLU 24 -9.629 -1.646 -11.991 1.00 0.00 C ATOM 261 C GLU 24 -9.018 -1.290 -13.373 1.00 0.00 C ATOM 262 O GLU 24 -8.748 -2.187 -14.186 1.00 0.00 O ATOM 256 CB GLU 24 -11.007 -2.337 -12.140 1.00 0.00 C ATOM 257 CG GLU 24 -12.231 -1.425 -12.375 1.00 0.00 C ATOM 258 CD GLU 24 -13.525 -2.205 -12.510 1.00 0.00 C ATOM 259 OE1 GLU 24 -14.188 -2.442 -11.479 1.00 0.00 O ATOM 260 OE2 GLU 24 -13.878 -2.581 -13.648 1.00 0.00 O ATOM 263 N SER 25 -8.769 0.009 -13.595 1.00 0.00 N ATOM 265 CA SER 25 -8.198 0.537 -14.850 1.00 0.00 C ATOM 269 C SER 25 -6.672 0.750 -14.798 1.00 0.00 C ATOM 270 O SER 25 -6.122 1.017 -13.723 1.00 0.00 O ATOM 266 CB SER 25 -8.899 1.846 -15.237 1.00 0.00 C ATOM 267 OG SER 25 -8.857 2.794 -14.182 1.00 0.00 O ATOM 271 N ASN 26 -6.018 0.646 -15.970 1.00 0.00 N ATOM 273 CA ASN 26 -4.553 0.803 -16.214 1.00 0.00 C ATOM 280 C ASN 26 -3.526 0.205 -15.208 1.00 0.00 C ATOM 281 O ASN 26 -3.923 -0.409 -14.211 1.00 0.00 O ATOM 274 CB ASN 26 -4.192 2.269 -16.608 1.00 0.00 C ATOM 275 CG ASN 26 -4.605 3.307 -15.558 1.00 0.00 C ATOM 276 OD1 ASN 26 -3.827 3.649 -14.667 1.00 0.00 O ATOM 277 ND2 ASN 26 -5.828 3.817 -15.676 1.00 0.00 N ATOM 282 N HIS 27 -2.226 0.372 -15.503 1.00 0.00 N ATOM 284 CA HIS 27 -1.109 -0.123 -14.674 1.00 0.00 C ATOM 292 C HIS 27 -0.713 0.938 -13.608 1.00 0.00 C ATOM 293 O HIS 27 0.401 1.486 -13.623 1.00 0.00 O ATOM 294 CB HIS 27 0.081 -0.512 -15.587 1.00 0.00 C ATOM 285 CG HIS 27 1.021 -1.523 -14.987 1.00 0.00 C ATOM 287 ND1 HIS 27 1.831 -1.242 -13.906 1.00 0.00 N ATOM 286 CD2 HIS 27 1.292 -2.804 -15.334 1.00 0.00 C ATOM 289 CE1 HIS 27 2.558 -2.305 -13.612 1.00 0.00 C ATOM 290 NE2 HIS 27 2.250 -3.267 -14.463 1.00 0.00 N ATOM 295 N CYS 28 -1.663 1.210 -12.703 1.00 0.00 N ATOM 297 CA CYS 28 -1.532 2.178 -11.599 1.00 0.00 C ATOM 300 C CYS 28 -1.530 1.484 -10.230 1.00 0.00 C ATOM 301 O CYS 28 -2.193 0.454 -10.056 1.00 0.00 O ATOM 298 CB CYS 28 -2.653 3.220 -11.666 1.00 0.00 C ATOM 299 SG CYS 28 -4.287 2.518 -11.959 1.00 0.00 S ATOM 302 N VAL 29 -0.755 2.041 -9.286 1.00 0.00 N ATOM 304 CA VAL 29 -0.605 1.527 -7.909 1.00 0.00 C ATOM 308 C VAL 29 -1.322 2.452 -6.886 1.00 0.00 C ATOM 309 O VAL 29 -1.345 3.675 -7.067 1.00 0.00 O ATOM 305 CB VAL 29 0.935 1.270 -7.552 1.00 0.00 C ATOM 306 CG1 VAL 29 1.759 2.576 -7.541 1.00 0.00 C ATOM 307 CG2 VAL 29 1.094 0.475 -6.244 1.00 0.00 C ATOM 310 N GLU 30 -1.894 1.841 -5.837 1.00 0.00 N ATOM 312 CA GLU 30 -2.637 2.539 -4.769 1.00 0.00 C ATOM 318 C GLU 30 -1.811 2.498 -3.463 1.00 0.00 C ATOM 319 O GLU 30 -1.372 1.424 -3.030 1.00 0.00 O ATOM 313 CB GLU 30 -4.002 1.830 -4.571 1.00 0.00 C ATOM 314 CG GLU 30 -5.012 2.465 -3.601 1.00 0.00 C ATOM 315 CD GLU 30 -6.303 1.675 -3.504 1.00 0.00 C ATOM 316 OE1 GLU 30 -7.234 1.955 -4.288 1.00 0.00 O ATOM 317 OE2 GLU 30 -6.390 0.775 -2.641 1.00 0.00 O ATOM 320 N VAL 31 -1.582 3.683 -2.877 1.00 0.00 N ATOM 322 CA VAL 31 -0.835 3.851 -1.614 1.00 0.00 C ATOM 326 C VAL 31 -1.659 4.814 -0.714 1.00 0.00 C ATOM 327 O VAL 31 -2.039 5.895 -1.172 1.00 0.00 O ATOM 323 CB VAL 31 0.694 4.271 -1.887 1.00 0.00 C ATOM 324 CG1 VAL 31 0.853 5.737 -2.300 1.00 0.00 C ATOM 325 CG2 VAL 31 1.597 3.871 -0.729 1.00 0.00 C ATOM 328 N ARG 32 -1.927 4.420 0.540 1.00 0.00 N ATOM 330 CA ARG 32 -2.746 5.232 1.471 1.00 0.00 C ATOM 343 C ARG 32 -2.091 5.702 2.781 1.00 0.00 C ATOM 344 O ARG 32 -1.398 4.926 3.452 1.00 0.00 O ATOM 331 CB ARG 32 -4.065 4.507 1.805 1.00 0.00 C ATOM 332 CG ARG 32 -5.043 4.377 0.632 1.00 0.00 C ATOM 333 CD ARG 32 -6.282 3.559 0.997 1.00 0.00 C ATOM 334 NE ARG 32 -7.166 4.248 1.942 1.00 0.00 N ATOM 336 CZ ARG 32 -8.300 3.751 2.436 1.00 0.00 C ATOM 337 NH1 ARG 32 -9.015 4.474 3.287 1.00 0.00 N ATOM 340 NH2 ARG 32 -8.730 2.540 2.090 1.00 0.00 N ATOM 345 N CYS 33 -2.293 6.994 3.095 1.00 0.00 N ATOM 347 CA CYS 33 -1.800 7.662 4.317 1.00 0.00 C ATOM 350 C CYS 33 -2.950 8.399 5.047 1.00 0.00 C ATOM 351 O CYS 33 -3.567 7.816 5.948 1.00 0.00 O ATOM 348 CB CYS 33 -0.642 8.628 3.996 1.00 0.00 C ATOM 349 SG CYS 33 0.068 9.479 5.433 1.00 0.00 S ATOM 352 N SER 34 -3.226 9.660 4.663 1.00 0.00 N ATOM 354 CA SER 34 -4.283 10.500 5.270 1.00 0.00 C ATOM 358 C SER 34 -5.148 11.269 4.239 1.00 0.00 C ATOM 359 O SER 34 -6.284 10.860 3.979 1.00 0.00 O ATOM 355 CB SER 34 -3.678 11.475 6.306 1.00 0.00 C ATOM 356 OG SER 34 -4.682 12.143 7.055 1.00 0.00 O ATOM 360 N ASP 35 -4.619 12.373 3.686 1.00 0.00 N ATOM 362 CA ASP 35 -5.317 13.229 2.698 1.00 0.00 C ATOM 367 C ASP 35 -4.465 13.455 1.438 1.00 0.00 C ATOM 368 O ASP 35 -3.254 13.221 1.470 1.00 0.00 O ATOM 363 CB ASP 35 -5.686 14.592 3.324 1.00 0.00 C ATOM 364 CG ASP 35 -6.706 14.471 4.452 1.00 0.00 C ATOM 365 OD1 ASP 35 -6.292 14.321 5.623 1.00 0.00 O ATOM 366 OD2 ASP 35 -7.923 14.546 4.171 1.00 0.00 O ATOM 369 N THR 36 -5.103 13.931 0.347 1.00 0.00 N ATOM 371 CA THR 36 -4.502 14.227 -0.992 1.00 0.00 C ATOM 376 C THR 36 -3.797 13.031 -1.680 1.00 0.00 C ATOM 377 O THR 36 -3.672 11.973 -1.063 1.00 0.00 O ATOM 372 CB THR 36 -3.564 15.501 -0.987 1.00 0.00 C ATOM 373 OG1 THR 36 -2.521 15.336 -0.018 1.00 0.00 O ATOM 375 CG2 THR 36 -4.361 16.762 -0.672 1.00 0.00 C ATOM 378 N LYS 37 -3.375 13.194 -2.945 1.00 0.00 N ATOM 380 CA LYS 37 -2.691 12.141 -3.730 1.00 0.00 C ATOM 389 C LYS 37 -1.183 12.395 -3.904 1.00 0.00 C ATOM 390 O LYS 37 -0.759 13.548 -4.054 1.00 0.00 O ATOM 381 CB LYS 37 -3.344 11.984 -5.114 1.00 0.00 C ATOM 382 CG LYS 37 -4.765 11.431 -5.096 1.00 0.00 C ATOM 383 CD LYS 37 -5.332 11.315 -6.507 1.00 0.00 C ATOM 384 CE LYS 37 -6.756 10.764 -6.515 1.00 0.00 C ATOM 385 NZ LYS 37 -7.762 11.702 -5.932 1.00 0.00 N ATOM 391 N TYR 38 -0.395 11.310 -3.862 1.00 0.00 N ATOM 393 CA TYR 38 1.071 11.339 -4.025 1.00 0.00 C ATOM 403 C TYR 38 1.479 10.765 -5.399 1.00 0.00 C ATOM 404 O TYR 38 0.863 9.807 -5.880 1.00 0.00 O ATOM 394 CB TYR 38 1.775 10.574 -2.870 1.00 0.00 C ATOM 395 CG TYR 38 3.305 10.725 -2.757 1.00 0.00 C ATOM 396 CD1 TYR 38 3.894 11.876 -2.169 1.00 0.00 C ATOM 398 CD2 TYR 38 4.170 9.704 -3.218 1.00 0.00 C ATOM 397 CE1 TYR 38 5.306 12.001 -2.046 1.00 0.00 C ATOM 399 CE2 TYR 38 5.582 9.822 -3.099 1.00 0.00 C ATOM 400 CZ TYR 38 6.137 10.972 -2.513 1.00 0.00 C ATOM 401 OH TYR 38 7.504 11.086 -2.397 1.00 0.00 O ATOM 405 N THR 39 2.505 11.374 -6.012 1.00 0.00 N ATOM 407 CA THR 39 3.043 10.975 -7.329 1.00 0.00 C ATOM 412 C THR 39 4.440 10.335 -7.202 1.00 0.00 C ATOM 413 O THR 39 5.241 10.752 -6.353 1.00 0.00 O ATOM 408 CB THR 39 3.110 12.183 -8.321 1.00 0.00 C ATOM 409 OG1 THR 39 3.759 13.294 -7.690 1.00 0.00 O ATOM 411 CG2 THR 39 1.710 12.595 -8.766 1.00 0.00 C ATOM 414 N LEU 40 4.696 9.305 -8.023 1.00 0.00 N ATOM 416 CA LEU 40 5.972 8.565 -8.051 1.00 0.00 C ATOM 421 C LEU 40 6.756 8.847 -9.341 1.00 0.00 C ATOM 422 O LEU 40 7.992 8.888 -9.319 1.00 0.00 O ATOM 417 CB LEU 40 5.731 7.046 -7.913 1.00 0.00 C ATOM 418 CG LEU 40 5.195 6.429 -6.606 1.00 0.00 C ATOM 419 CD1 LEU 40 4.102 5.422 -6.934 1.00 0.00 C ATOM 420 CD2 LEU 40 6.311 5.760 -5.788 1.00 0.00 C ATOM 423 N CYS 41 6.021 9.051 -10.451 1.00 0.00 N ATOM 425 CA CYS 41 6.534 9.340 -11.820 1.00 0.00 C ATOM 428 C CYS 41 7.481 8.305 -12.442 1.00 0.00 C ATOM 429 O CYS 41 8.376 7.800 -11.730 1.00 0.00 O ATOM 426 CB CYS 41 7.152 10.749 -11.913 1.00 0.00 C ATOM 427 SG CYS 41 6.008 12.095 -11.525 1.00 0.00 S TER END