####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS004_2 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS004_2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 1 - 21 4.95 13.80 LCS_AVERAGE: 43.72 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 1 - 16 1.58 15.27 LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.76 15.37 LCS_AVERAGE: 22.67 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.94 15.89 LONGEST_CONTINUOUS_SEGMENT: 14 3 - 16 0.69 15.85 LCS_AVERAGE: 18.56 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 16 21 3 3 4 8 11 16 19 19 21 21 23 23 25 25 26 30 30 31 31 31 LCS_GDT Q 2 Q 2 14 16 21 3 3 7 14 16 16 19 19 21 21 23 23 25 25 26 30 30 31 31 31 LCS_GDT E 3 E 3 14 16 21 7 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT T 4 T 4 14 16 21 10 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT R 5 R 5 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 6 K 6 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 7 K 7 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT C 8 C 8 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT T 9 T 9 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT E 10 E 10 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT M 11 M 11 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 12 K 12 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 13 K 13 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 14 K 14 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT F 15 F 15 14 16 21 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 16 K 16 14 16 21 4 7 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT N 17 N 17 5 16 21 4 4 4 5 10 15 19 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT C 18 C 18 5 7 21 4 4 4 5 8 14 19 19 19 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT E 19 E 19 5 7 21 3 3 3 5 8 9 13 16 18 20 23 23 25 25 27 30 30 31 31 31 LCS_GDT V 20 V 20 3 3 21 3 3 3 4 4 5 8 8 10 12 14 17 21 23 26 30 30 31 31 31 LCS_GDT R 21 R 21 3 3 21 3 3 3 4 5 6 8 9 10 12 14 16 17 19 22 23 25 27 27 29 LCS_GDT C 22 C 22 3 5 18 0 3 3 3 3 6 8 9 10 12 14 16 17 19 22 23 25 26 27 28 LCS_GDT D 23 D 23 4 5 18 3 4 4 4 4 6 8 9 10 12 14 16 17 19 22 23 25 26 27 28 LCS_GDT E 24 E 24 4 5 18 3 4 4 4 4 6 8 9 10 11 14 16 17 19 22 23 25 26 27 28 LCS_GDT S 25 S 25 4 5 18 3 4 4 4 5 6 8 8 10 12 14 16 17 19 22 23 25 26 27 28 LCS_GDT N 26 N 26 5 5 18 3 5 5 5 5 5 7 9 10 12 14 16 17 19 22 23 25 26 27 28 LCS_GDT H 27 H 27 5 5 18 4 5 5 5 5 6 8 8 10 12 14 16 17 19 22 23 25 26 27 28 LCS_GDT C 28 C 28 5 5 18 4 5 5 5 5 6 8 8 10 12 13 16 17 19 22 23 25 26 27 28 LCS_GDT V 29 V 29 5 5 18 4 5 5 5 5 5 8 8 9 9 10 12 17 19 20 22 24 26 27 28 LCS_GDT E 30 E 30 5 5 18 4 5 5 5 5 6 8 8 9 11 13 15 17 19 22 23 25 26 27 28 LCS_GDT V 31 V 31 3 3 18 1 4 4 4 4 5 5 8 8 11 13 15 17 19 22 23 29 31 31 31 LCS_GDT R 32 R 32 3 4 13 3 4 4 4 4 4 6 8 9 10 14 18 21 25 27 30 30 31 31 31 LCS_GDT C 33 C 33 4 5 13 3 4 4 5 5 5 6 6 8 8 16 19 21 23 27 30 30 31 31 31 LCS_GDT S 34 S 34 4 5 11 7 10 12 15 16 16 19 19 19 20 22 22 24 25 27 30 30 31 31 31 LCS_GDT D 35 D 35 4 5 11 3 4 4 8 11 13 16 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT T 36 T 36 4 5 11 3 4 4 5 8 13 18 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT K 37 K 37 4 5 11 2 4 6 11 15 16 18 19 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT Y 38 Y 38 3 3 11 0 4 4 4 4 4 11 16 21 21 23 23 25 25 27 30 30 31 31 31 LCS_GDT T 39 T 39 3 3 11 3 3 4 4 4 4 6 9 11 12 15 22 25 25 27 30 30 31 31 31 LCS_GDT L 40 L 40 3 3 11 3 3 3 3 3 4 6 8 11 12 15 22 23 24 27 30 30 31 31 31 LCS_GDT C 41 C 41 3 3 11 3 3 3 3 3 4 5 5 8 13 15 22 25 25 27 30 30 31 31 31 LCS_AVERAGE LCS_A: 28.32 ( 18.56 22.67 43.72 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 13 14 15 16 16 19 19 21 21 23 23 25 25 27 30 30 31 31 31 GDT PERCENT_AT 26.83 31.71 34.15 36.59 39.02 39.02 46.34 46.34 51.22 51.22 56.10 56.10 60.98 60.98 65.85 73.17 73.17 75.61 75.61 75.61 GDT RMS_LOCAL 0.37 0.48 0.69 1.00 1.21 1.21 2.25 2.25 2.80 2.80 3.42 3.42 4.18 4.18 4.92 5.31 5.31 5.64 5.64 5.64 GDT RMS_ALL_AT 16.33 16.04 15.85 15.51 15.50 15.50 14.88 14.88 14.51 14.51 14.10 14.10 13.81 13.81 13.31 13.28 13.28 13.08 13.08 13.08 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.850 0 0.079 0.691 6.550 10.909 7.273 6.550 LGA Q 2 Q 2 2.540 0 0.209 1.229 8.764 38.636 17.778 8.764 LGA E 3 E 3 1.005 0 0.103 0.971 6.356 61.818 36.768 6.356 LGA T 4 T 4 1.408 0 0.021 1.140 2.729 58.182 51.688 2.729 LGA R 5 R 5 1.766 0 0.030 0.976 3.797 54.545 36.033 3.608 LGA K 6 K 6 1.228 0 0.019 0.673 3.786 69.545 49.091 3.103 LGA K 7 K 7 1.038 0 0.051 0.799 2.891 65.455 49.697 2.780 LGA C 8 C 8 1.196 0 0.040 0.760 2.960 65.455 59.091 2.960 LGA T 9 T 9 0.726 0 0.012 0.049 1.066 81.818 79.481 1.066 LGA E 10 E 10 0.724 0 0.020 0.655 2.698 77.727 58.182 2.512 LGA M 11 M 11 1.136 0 0.056 0.902 4.148 69.545 60.000 4.148 LGA K 12 K 12 1.503 0 0.047 1.114 5.781 51.364 38.990 5.781 LGA K 13 K 13 2.179 0 0.018 0.572 2.916 38.636 38.990 1.274 LGA K 14 K 14 2.609 0 0.064 0.676 5.052 30.000 22.626 5.052 LGA F 15 F 15 2.616 0 0.479 0.431 7.407 35.909 14.876 7.407 LGA K 16 K 16 1.352 0 0.111 0.970 5.300 46.364 35.152 5.300 LGA N 17 N 17 4.105 0 0.062 0.522 6.572 11.364 5.682 6.572 LGA C 18 C 18 4.639 0 0.613 0.615 7.352 3.182 9.697 2.691 LGA E 19 E 19 7.214 0 0.556 1.087 11.316 0.000 0.000 9.870 LGA V 20 V 20 12.880 0 0.612 0.643 16.176 0.000 0.000 15.369 LGA R 21 R 21 18.114 0 0.633 1.205 26.126 0.000 0.000 24.890 LGA C 22 C 22 20.615 0 0.619 0.677 23.262 0.000 0.000 18.310 LGA D 23 D 23 25.327 0 0.623 1.331 29.048 0.000 0.000 25.003 LGA E 24 E 24 32.291 0 0.066 0.706 36.033 0.000 0.000 34.943 LGA S 25 S 25 34.096 0 0.434 0.407 34.116 0.000 0.000 34.030 LGA N 26 N 26 32.068 0 0.049 1.170 32.585 0.000 0.000 28.132 LGA H 27 H 27 33.974 0 0.265 0.265 42.176 0.000 0.000 42.176 LGA C 28 C 28 27.829 0 0.040 0.072 29.847 0.000 0.000 29.629 LGA V 29 V 29 23.479 0 0.606 0.565 27.563 0.000 0.000 23.251 LGA E 30 E 30 16.777 0 0.623 0.801 19.543 0.000 0.000 16.900 LGA V 31 V 31 13.279 0 0.636 1.024 15.109 0.000 0.000 13.894 LGA R 32 R 32 10.247 0 0.567 1.595 15.575 0.000 0.000 15.575 LGA C 33 C 33 7.091 0 0.143 0.167 11.998 4.091 2.727 11.998 LGA S 34 S 34 1.179 0 0.126 0.144 5.121 25.909 27.576 3.582 LGA D 35 D 35 8.269 0 0.117 0.969 12.640 0.000 0.000 12.640 LGA T 36 T 36 11.181 0 0.601 0.597 14.837 0.000 0.000 13.432 LGA K 37 K 37 7.793 0 0.613 1.230 10.441 0.000 0.606 7.530 LGA Y 38 Y 38 10.473 0 0.635 1.315 11.525 0.000 0.455 4.395 LGA T 39 T 39 14.998 0 0.595 0.545 17.809 0.000 0.000 16.196 LGA L 40 L 40 15.920 0 0.624 0.888 19.690 0.000 0.000 17.269 LGA C 41 C 41 14.301 0 0.374 0.577 17.472 0.000 0.000 12.922 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 11.198 11.051 11.903 21.962 17.133 7.761 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 19 2.25 46.951 40.390 0.809 LGA_LOCAL RMSD: 2.248 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.883 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 11.198 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.127989 * X + 0.782928 * Y + -0.608804 * Z + 0.177019 Y_new = -0.989045 * X + 0.146282 * Y + -0.019807 * Z + 7.222129 Z_new = 0.073549 * X + 0.604669 * Y + 0.793074 * Z + 1.778718 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.442105 -0.073616 0.651414 [DEG: -82.6265 -4.2179 37.3232 ] ZXZ: -1.538273 0.654958 0.121041 [DEG: -88.1366 37.5263 6.9351 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS004_2 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS004_2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 19 2.25 40.390 11.20 REMARK ---------------------------------------------------------- MOLECULE T0955TS004_2 PFRMAT TS TARGET T0955 MODEL 2 PARENT 5fjd_A ATOM 337 N SER 1 -1.539 -11.903 -3.785 1.00 0.53 N ATOM 338 CA SER 1 -0.304 -12.508 -3.229 1.00 0.53 C ATOM 339 C SER 1 -0.478 -12.748 -1.745 1.00 0.53 C ATOM 340 O SER 1 -1.211 -12.023 -1.085 1.00 0.53 O ATOM 341 CB SER 1 0.888 -11.577 -3.470 1.00 0.53 C ATOM 342 OG SER 1 2.075 -12.078 -2.873 1.00 0.53 O ATOM 343 N GLN 2 0.213 -13.731 -1.187 1.00 0.62 N ATOM 344 CA GLN 2 0.163 -13.983 0.252 1.00 0.62 C ATOM 345 C GLN 2 0.869 -12.841 0.975 1.00 0.62 C ATOM 346 O GLN 2 0.509 -12.424 2.075 1.00 0.62 O ATOM 347 CB GLN 2 0.900 -15.285 0.556 1.00 0.62 C ATOM 348 CG GLN 2 0.247 -16.533 -0.029 1.00 0.62 C ATOM 349 CD GLN 2 1.036 -17.793 0.260 1.00 0.62 C ATOM 350 OE1 GLN 2 2.202 -17.747 0.641 1.00 0.62 O ATOM 351 NE2 GLN 2 0.416 -18.927 0.072 1.00 0.62 N ATOM 352 N GLU 3 1.869 -12.306 0.296 1.00 0.83 N ATOM 353 CA GLU 3 2.714 -11.250 0.836 1.00 0.83 C ATOM 354 C GLU 3 2.009 -9.906 0.937 1.00 0.83 C ATOM 355 O GLU 3 2.524 -8.994 1.578 1.00 0.83 O ATOM 356 CB GLU 3 3.930 -11.071 -0.069 1.00 0.83 C ATOM 357 CG GLU 3 4.727 -12.343 -0.273 1.00 0.83 C ATOM 358 CD GLU 3 5.985 -12.085 -1.068 1.00 0.83 C ATOM 359 OE1 GLU 3 5.899 -11.501 -2.164 1.00 0.83 O ATOM 360 OE2 GLU 3 7.083 -12.493 -0.619 1.00 0.83 O ATOM 361 N THR 4 0.838 -9.772 0.326 1.00 0.78 N ATOM 362 CA THR 4 0.134 -8.492 0.285 1.00 0.78 C ATOM 363 C THR 4 -0.076 -7.906 1.677 1.00 0.78 C ATOM 364 O THR 4 0.098 -6.714 1.858 1.00 0.78 O ATOM 365 CB THR 4 -1.232 -8.630 -0.429 1.00 0.78 C ATOM 366 OG1 THR 4 -1.031 -9.223 -1.713 1.00 0.78 O ATOM 367 CG2 THR 4 -1.905 -7.291 -0.676 1.00 0.78 C ATOM 368 N ARG 5 -0.366 -8.707 2.693 1.00 0.51 N ATOM 369 CA ARG 5 -0.555 -8.149 4.043 1.00 0.51 C ATOM 370 C ARG 5 0.721 -7.594 4.662 1.00 0.51 C ATOM 371 O ARG 5 0.688 -6.546 5.302 1.00 0.51 O ATOM 372 CB ARG 5 -1.185 -9.204 4.954 1.00 0.51 C ATOM 373 CG ARG 5 -2.618 -9.492 4.527 1.00 0.51 C ATOM 374 CD ARG 5 -3.250 -10.691 5.201 1.00 0.51 C ATOM 375 NE ARG 5 -2.562 -11.951 4.873 1.00 0.51 N ATOM 376 CZ ARG 5 -2.666 -12.646 3.748 1.00 0.51 C ATOM 377 NH1 ARG 5 -2.089 -13.809 3.679 1.00 0.51 N ATOM 378 NH2 ARG 5 -3.301 -12.242 2.678 1.00 0.51 N ATOM 379 N LYS 6 1.856 -8.239 4.420 1.00 0.25 N ATOM 380 CA LYS 6 3.142 -7.711 4.891 1.00 0.25 C ATOM 381 C LYS 6 3.426 -6.416 4.153 1.00 0.25 C ATOM 382 O LYS 6 3.798 -5.402 4.742 1.00 0.25 O ATOM 383 CB LYS 6 4.276 -8.713 4.641 1.00 0.25 C ATOM 384 CG LYS 6 5.631 -8.240 5.156 1.00 0.25 C ATOM 385 CD LYS 6 6.723 -9.233 4.820 1.00 0.25 C ATOM 386 CE LYS 6 8.054 -8.756 5.378 1.00 0.25 C ATOM 387 NZ LYS 6 9.194 -9.644 4.983 1.00 0.25 N ATOM 388 N LYS 7 3.202 -6.452 2.848 1.00 0.08 N ATOM 389 CA LYS 7 3.426 -5.287 1.999 1.00 0.08 C ATOM 390 C LYS 7 2.522 -4.128 2.381 1.00 0.08 C ATOM 391 O LYS 7 2.999 -3.016 2.413 1.00 0.08 O ATOM 392 CB LYS 7 3.236 -5.652 0.528 1.00 0.08 C ATOM 393 CG LYS 7 4.313 -6.583 -0.012 1.00 0.08 C ATOM 394 CD LYS 7 4.054 -6.945 -1.470 1.00 0.08 C ATOM 395 CE LYS 7 5.171 -7.813 -2.045 1.00 0.08 C ATOM 396 NZ LYS 7 6.464 -7.057 -2.155 1.00 0.08 N ATOM 397 N CYS 8 1.267 -4.353 2.741 1.00 0.33 N ATOM 398 CA CYS 8 0.379 -3.260 3.143 1.00 0.33 C ATOM 399 C CYS 8 0.903 -2.522 4.367 1.00 0.33 C ATOM 400 O CYS 8 0.859 -1.299 4.411 1.00 0.33 O ATOM 401 CB CYS 8 -1.028 -3.771 3.459 1.00 0.33 C ATOM 402 SG CYS 8 -1.939 -4.411 2.040 1.00 0.33 S ATOM 403 N THR 9 1.452 -3.249 5.330 1.00 0.50 N ATOM 404 CA THR 9 2.043 -2.616 6.505 1.00 0.50 C ATOM 405 C THR 9 3.193 -1.691 6.107 1.00 0.50 C ATOM 406 O THR 9 3.304 -0.564 6.580 1.00 0.50 O ATOM 407 CB THR 9 2.542 -3.714 7.463 1.00 0.50 C ATOM 408 OG1 THR 9 1.485 -4.654 7.661 1.00 0.50 O ATOM 409 CG2 THR 9 2.934 -3.183 8.819 1.00 0.50 C ATOM 410 N GLU 10 4.040 -2.141 5.196 1.00 0.60 N ATOM 411 CA GLU 10 5.153 -1.313 4.736 1.00 0.60 C ATOM 412 C GLU 10 4.673 -0.147 3.869 1.00 0.60 C ATOM 413 O GLU 10 5.171 0.975 3.980 1.00 0.60 O ATOM 414 CB GLU 10 6.146 -2.176 3.952 1.00 0.60 C ATOM 415 CG GLU 10 6.764 -3.292 4.797 1.00 0.60 C ATOM 416 CD GLU 10 7.740 -4.160 4.018 1.00 0.60 C ATOM 417 OE1 GLU 10 8.187 -3.750 2.921 1.00 0.60 O ATOM 418 OE2 GLU 10 8.072 -5.275 4.487 1.00 0.60 O ATOM 419 N MET 11 3.687 -0.396 3.018 1.00 0.45 N ATOM 420 CA MET 11 3.141 0.622 2.120 1.00 0.45 C ATOM 421 C MET 11 2.412 1.718 2.874 1.00 0.45 C ATOM 422 O MET 11 2.526 2.880 2.509 1.00 0.45 O ATOM 423 CB MET 11 2.149 0.018 1.120 1.00 0.45 C ATOM 424 CG MET 11 2.769 -0.845 0.023 1.00 0.45 C ATOM 425 SD MET 11 3.943 0.031 -1.021 1.00 0.45 S ATOM 426 CE MET 11 2.892 1.201 -1.870 1.00 0.45 C ATOM 427 N LYS 12 1.694 1.392 3.940 1.00 0.19 N ATOM 428 CA LYS 12 0.983 2.430 4.686 1.00 0.19 C ATOM 429 C LYS 12 1.958 3.409 5.314 1.00 0.19 C ATOM 430 O LYS 12 1.721 4.614 5.309 1.00 0.19 O ATOM 431 CB LYS 12 0.045 1.820 5.737 1.00 0.19 C ATOM 432 CG LYS 12 -0.836 2.844 6.468 1.00 0.19 C ATOM 433 CD LYS 12 -1.771 3.609 5.526 1.00 0.19 C ATOM 434 CE LYS 12 -2.558 4.661 6.278 1.00 0.19 C ATOM 435 NZ LYS 12 -3.442 5.432 5.360 1.00 0.19 N ATOM 436 N LYS 13 3.098 2.909 5.764 1.00 0.04 N ATOM 437 CA LYS 13 4.156 3.781 6.278 1.00 0.04 C ATOM 438 C LYS 13 4.674 4.703 5.174 1.00 0.04 C ATOM 439 O LYS 13 4.876 5.893 5.407 1.00 0.04 O ATOM 440 CB LYS 13 5.282 2.932 6.872 1.00 0.04 C ATOM 441 CG LYS 13 4.828 2.088 8.059 1.00 0.04 C ATOM 442 CD LYS 13 5.887 1.099 8.525 1.00 0.04 C ATOM 443 CE LYS 13 5.273 0.201 9.588 1.00 0.04 C ATOM 444 NZ LYS 13 6.185 -0.855 10.135 1.00 0.04 N ATOM 445 N LYS 14 4.814 4.196 3.951 1.00 0.29 N ATOM 446 CA LYS 14 5.233 5.052 2.828 1.00 0.29 C ATOM 447 C LYS 14 4.196 6.135 2.576 1.00 0.29 C ATOM 448 O LYS 14 4.545 7.297 2.399 1.00 0.29 O ATOM 449 CB LYS 14 5.402 4.293 1.505 1.00 0.29 C ATOM 450 CG LYS 14 6.384 3.149 1.522 1.00 0.29 C ATOM 451 CD LYS 14 6.506 2.540 0.138 1.00 0.29 C ATOM 452 CE LYS 14 7.199 1.185 0.190 1.00 0.29 C ATOM 453 NZ LYS 14 7.414 0.667 -1.200 1.00 0.29 N ATOM 454 N PHE 15 2.928 5.751 2.569 1.00 0.38 N ATOM 455 CA PHE 15 1.845 6.693 2.308 1.00 0.38 C ATOM 456 C PHE 15 1.809 7.773 3.374 1.00 0.38 C ATOM 457 O PHE 15 1.744 8.948 3.046 1.00 0.38 O ATOM 458 CB PHE 15 0.480 5.996 2.273 1.00 0.38 C ATOM 459 CG PHE 15 0.341 4.944 1.205 1.00 0.38 C ATOM 460 CD1 PHE 15 0.894 5.112 -0.083 1.00 0.38 C ATOM 461 CD2 PHE 15 -0.390 3.776 1.482 1.00 0.38 C ATOM 462 CE1 PHE 15 0.712 4.125 -1.081 1.00 0.38 C ATOM 463 CE2 PHE 15 -0.553 2.773 0.507 1.00 0.38 C ATOM 464 CZ PHE 15 -0.017 2.955 -0.783 1.00 0.38 C ATOM 465 N LYS 16 1.911 7.403 4.643 1.00 0.31 N ATOM 466 CA LYS 16 1.892 8.395 5.716 1.00 0.31 C ATOM 467 C LYS 16 3.090 9.333 5.638 1.00 0.31 C ATOM 468 O LYS 16 2.941 10.526 5.863 1.00 0.31 O ATOM 469 CB LYS 16 1.827 7.708 7.084 1.00 0.31 C ATOM 470 CG LYS 16 1.635 8.655 8.274 1.00 0.31 C ATOM 471 CD LYS 16 0.281 9.369 8.274 1.00 0.31 C ATOM 472 CE LYS 16 0.187 10.334 9.444 1.00 0.31 C ATOM 473 NZ LYS 16 -1.163 10.975 9.520 1.00 0.31 N ATOM 474 N ASN 17 4.261 8.837 5.266 1.00 0.00 N ATOM 475 CA ASN 17 5.417 9.723 5.102 1.00 0.00 C ATOM 476 C ASN 17 5.142 10.768 4.020 1.00 0.00 C ATOM 477 O ASN 17 5.518 11.934 4.153 1.00 0.00 O ATOM 478 CB ASN 17 6.675 8.945 4.700 1.00 0.00 C ATOM 479 CG ASN 17 7.204 8.062 5.800 1.00 0.00 C ATOM 480 OD1 ASN 17 6.912 8.250 6.972 1.00 0.00 O ATOM 481 ND2 ASN 17 8.005 7.101 5.433 1.00 0.00 N ATOM 482 N CYS 18 4.474 10.369 2.948 1.00 0.40 N ATOM 483 CA CYS 18 4.127 11.310 1.888 1.00 0.40 C ATOM 484 C CYS 18 2.997 12.254 2.298 1.00 0.40 C ATOM 485 O CYS 18 3.026 13.433 1.969 1.00 0.40 O ATOM 486 CB CYS 18 3.742 10.546 0.624 1.00 0.40 C ATOM 487 SG CYS 18 5.056 9.470 0.001 1.00 0.40 S ATOM 488 N GLU 19 2.033 11.761 3.059 1.00 0.68 N ATOM 489 CA GLU 19 0.917 12.567 3.557 1.00 0.68 C ATOM 490 C GLU 19 1.425 13.722 4.421 1.00 0.68 C ATOM 491 O GLU 19 0.993 14.860 4.279 1.00 0.68 O ATOM 492 CB GLU 19 0.002 11.674 4.402 1.00 0.68 C ATOM 493 CG GLU 19 -1.300 12.303 4.851 1.00 0.68 C ATOM 494 CD GLU 19 -1.947 11.502 5.969 1.00 0.68 C ATOM 495 OE1 GLU 19 -2.189 10.286 5.829 1.00 0.68 O ATOM 496 OE2 GLU 19 -2.177 12.081 7.057 1.00 0.68 O ATOM 497 N VAL 20 2.402 13.439 5.272 1.00 0.78 N ATOM 498 CA VAL 20 2.989 14.454 6.151 1.00 0.78 C ATOM 499 C VAL 20 3.672 15.551 5.337 1.00 0.78 C ATOM 500 O VAL 20 3.578 16.728 5.682 1.00 0.78 O ATOM 501 CB VAL 20 3.966 13.773 7.156 1.00 0.78 C ATOM 502 CG1 VAL 20 4.808 14.770 7.959 1.00 0.78 C ATOM 503 CG2 VAL 20 3.163 12.918 8.146 1.00 0.78 C ATOM 504 N ARG 21 4.299 15.206 4.219 1.00 0.80 N ATOM 505 CA ARG 21 4.923 16.226 3.370 1.00 0.80 C ATOM 506 C ARG 21 3.884 16.982 2.547 1.00 0.80 C ATOM 507 O ARG 21 4.053 18.166 2.277 1.00 0.80 O ATOM 508 CB ARG 21 5.962 15.600 2.436 1.00 0.80 C ATOM 509 CG ARG 21 7.139 14.873 3.109 1.00 0.80 C ATOM 510 CD ARG 21 8.268 15.769 3.628 1.00 0.80 C ATOM 511 NE ARG 21 7.924 16.549 4.825 1.00 0.80 N ATOM 512 CZ ARG 21 7.996 16.155 6.088 1.00 0.80 C ATOM 513 NH1 ARG 21 7.691 17.004 7.025 1.00 0.80 N ATOM 514 NH2 ARG 21 8.336 14.946 6.451 1.00 0.80 N ATOM 515 N CYS 22 2.793 16.330 2.168 1.00 1.17 N ATOM 516 CA CYS 22 1.725 17.001 1.422 1.00 1.17 C ATOM 517 C CYS 22 1.045 18.055 2.292 1.00 1.17 C ATOM 518 O CYS 22 0.695 19.134 1.828 1.00 1.17 O ATOM 519 CB CYS 22 0.665 15.993 0.960 1.00 1.17 C ATOM 520 SG CYS 22 1.237 14.771 -0.245 1.00 1.17 S ATOM 521 N ASP 23 0.905 17.750 3.571 1.00 1.12 N ATOM 522 CA ASP 23 0.268 18.646 4.532 1.00 1.12 C ATOM 523 C ASP 23 0.949 20.012 4.616 1.00 1.12 C ATOM 524 O ASP 23 0.322 21.029 4.888 1.00 1.12 O ATOM 525 CB ASP 23 0.324 17.980 5.905 1.00 1.12 C ATOM 526 CG ASP 23 -0.527 18.687 6.930 1.00 1.12 C ATOM 527 OD1 ASP 23 -1.718 18.328 7.050 1.00 1.12 O ATOM 528 OD2 ASP 23 -0.050 19.580 7.661 1.00 1.12 O ATOM 529 N GLU 24 2.242 20.047 4.337 1.00 1.37 N ATOM 530 CA GLU 24 3.025 21.278 4.426 1.00 1.37 C ATOM 531 C GLU 24 2.687 22.295 3.340 1.00 1.37 C ATOM 532 O GLU 24 3.022 23.474 3.453 1.00 1.37 O ATOM 533 CB GLU 24 4.512 20.938 4.341 1.00 1.37 C ATOM 534 CG GLU 24 4.930 19.938 5.402 1.00 1.37 C ATOM 535 CD GLU 24 6.408 19.640 5.381 1.00 1.37 C ATOM 536 OE1 GLU 24 6.936 19.141 4.368 1.00 1.37 O ATOM 537 OE2 GLU 24 7.075 19.842 6.416 1.00 1.37 O ATOM 538 N SER 25 2.003 21.843 2.300 1.00 1.29 N ATOM 539 CA SER 25 1.675 22.677 1.148 1.00 1.29 C ATOM 540 C SER 25 0.180 22.692 0.867 1.00 1.29 C ATOM 541 O SER 25 -0.239 22.570 -0.279 1.00 1.29 O ATOM 542 CB SER 25 2.429 22.150 -0.067 1.00 1.29 C ATOM 543 OG SER 25 3.808 22.054 0.232 1.00 1.29 O ATOM 544 N ASN 26 -0.632 22.830 1.910 1.00 1.25 N ATOM 545 CA ASN 26 -2.096 22.730 1.795 1.00 1.25 C ATOM 546 C ASN 26 -2.805 23.567 0.722 1.00 1.25 C ATOM 547 O ASN 26 -3.916 23.229 0.332 1.00 1.25 O ATOM 548 CB ASN 26 -2.770 23.082 3.129 1.00 1.25 C ATOM 549 CG ASN 26 -2.607 22.020 4.178 1.00 1.25 C ATOM 550 OD1 ASN 26 -2.856 20.839 3.953 1.00 1.25 O ATOM 551 ND2 ASN 26 -2.241 22.435 5.355 1.00 1.25 N ATOM 552 N HIS 27 -2.212 24.638 0.219 1.00 0.78 N ATOM 553 CA HIS 27 -2.832 25.395 -0.872 1.00 0.78 C ATOM 554 C HIS 27 -2.764 24.686 -2.227 1.00 0.78 C ATOM 555 O HIS 27 -3.551 24.998 -3.129 1.00 0.78 O ATOM 556 CB HIS 27 -2.160 26.761 -1.002 1.00 0.78 C ATOM 557 CG HIS 27 -2.413 27.662 0.166 1.00 0.78 C ATOM 558 ND1 HIS 27 -3.676 28.104 0.497 1.00 0.78 N ATOM 559 CD2 HIS 27 -1.548 28.208 1.063 1.00 0.78 C ATOM 560 CE1 HIS 27 -3.508 28.930 1.575 1.00 0.78 C ATOM 561 NE2 HIS 27 -2.211 29.015 1.952 1.00 0.78 N ATOM 562 N CYS 28 -1.838 23.753 -2.398 1.00 0.09 N ATOM 563 CA CYS 28 -1.642 23.073 -3.678 1.00 0.09 C ATOM 564 C CYS 28 -2.681 21.968 -3.896 1.00 0.09 C ATOM 565 O CYS 28 -2.761 21.018 -3.119 1.00 0.09 O ATOM 566 CB CYS 28 -0.225 22.504 -3.718 1.00 0.09 C ATOM 567 SG CYS 28 1.041 23.780 -3.492 1.00 0.09 S ATOM 568 N VAL 29 -3.495 22.085 -4.938 1.00 0.12 N ATOM 569 CA VAL 29 -4.634 21.179 -5.128 1.00 0.12 C ATOM 570 C VAL 29 -4.192 19.735 -5.361 1.00 0.12 C ATOM 571 O VAL 29 -4.759 18.806 -4.785 1.00 0.12 O ATOM 572 CB VAL 29 -5.530 21.649 -6.315 1.00 0.12 C ATOM 573 CG1 VAL 29 -6.747 20.735 -6.503 1.00 0.12 C ATOM 574 CG2 VAL 29 -6.022 23.088 -6.085 1.00 0.12 C ATOM 575 N GLU 30 -3.143 19.523 -6.145 1.00 0.58 N ATOM 576 CA GLU 30 -2.676 18.157 -6.409 1.00 0.58 C ATOM 577 C GLU 30 -2.185 17.496 -5.134 1.00 0.58 C ATOM 578 O GLU 30 -2.371 16.302 -4.897 1.00 0.58 O ATOM 579 CB GLU 30 -1.485 18.151 -7.361 1.00 0.58 C ATOM 580 CG GLU 30 -1.738 18.771 -8.708 1.00 0.58 C ATOM 581 CD GLU 30 -0.491 18.729 -9.564 1.00 0.58 C ATOM 582 OE1 GLU 30 0.573 19.208 -9.100 1.00 0.58 O ATOM 583 OE2 GLU 30 -0.541 18.208 -10.699 1.00 0.58 O ATOM 584 N VAL 31 -1.551 18.299 -4.297 1.00 0.98 N ATOM 585 CA VAL 31 -0.981 17.803 -3.056 1.00 0.98 C ATOM 586 C VAL 31 -2.115 17.465 -2.094 1.00 0.98 C ATOM 587 O VAL 31 -2.033 16.469 -1.392 1.00 0.98 O ATOM 588 CB VAL 31 0.051 18.821 -2.500 1.00 0.98 C ATOM 589 CG1 VAL 31 -0.353 19.403 -1.157 1.00 0.98 C ATOM 590 CG2 VAL 31 1.442 18.192 -2.431 1.00 0.98 C ATOM 591 N ARG 32 -3.214 18.211 -2.112 1.00 0.85 N ATOM 592 CA ARG 32 -4.366 17.882 -1.267 1.00 0.85 C ATOM 593 C ARG 32 -5.090 16.644 -1.751 1.00 0.85 C ATOM 594 O ARG 32 -5.543 15.835 -0.946 1.00 0.85 O ATOM 595 CB ARG 32 -5.345 19.055 -1.213 1.00 0.85 C ATOM 596 CG ARG 32 -4.842 20.254 -0.413 1.00 0.85 C ATOM 597 CD ARG 32 -4.709 19.960 1.082 1.00 0.85 C ATOM 598 NE ARG 32 -6.002 19.631 1.700 1.00 0.85 N ATOM 599 CZ ARG 32 -6.188 19.079 2.888 1.00 0.85 C ATOM 600 NH1 ARG 32 -7.406 18.878 3.298 1.00 0.85 N ATOM 601 NH2 ARG 32 -5.211 18.735 3.686 1.00 0.85 N ATOM 602 N CYS 33 -5.154 16.449 -3.058 1.00 0.33 N ATOM 603 CA CYS 33 -5.726 15.218 -3.591 1.00 0.33 C ATOM 604 C CYS 33 -4.859 14.038 -3.154 1.00 0.33 C ATOM 605 O CYS 33 -5.368 12.998 -2.731 1.00 0.33 O ATOM 606 CB CYS 33 -5.812 15.292 -5.117 1.00 0.33 C ATOM 607 SG CYS 33 -6.920 16.604 -5.690 1.00 0.33 S ATOM 608 N SER 34 -3.547 14.221 -3.206 1.00 0.66 N ATOM 609 CA SER 34 -2.613 13.178 -2.789 1.00 0.66 C ATOM 610 C SER 34 -2.673 12.904 -1.287 1.00 0.66 C ATOM 611 O SER 34 -2.676 11.750 -0.891 1.00 0.66 O ATOM 612 CB SER 34 -1.185 13.563 -3.175 1.00 0.66 C ATOM 613 OG SER 34 -1.125 13.907 -4.549 1.00 0.66 O ATOM 614 N ASP 35 -2.771 13.945 -0.471 1.00 0.84 N ATOM 615 CA ASP 35 -2.911 13.839 0.988 1.00 0.84 C ATOM 616 C ASP 35 -4.110 12.978 1.341 1.00 0.84 C ATOM 617 O ASP 35 -4.009 12.011 2.099 1.00 0.84 O ATOM 618 CB ASP 35 -3.121 15.241 1.577 1.00 0.84 C ATOM 619 CG ASP 35 -3.692 15.218 2.987 1.00 0.84 C ATOM 620 OD1 ASP 35 -2.905 15.191 3.948 1.00 0.84 O ATOM 621 OD2 ASP 35 -4.933 15.299 3.142 1.00 0.84 O ATOM 622 N THR 36 -5.246 13.296 0.743 1.00 0.76 N ATOM 623 CA THR 36 -6.453 12.528 0.990 1.00 0.76 C ATOM 624 C THR 36 -6.282 11.090 0.524 1.00 0.76 C ATOM 625 O THR 36 -6.649 10.149 1.225 1.00 0.76 O ATOM 626 CB THR 36 -7.645 13.182 0.287 1.00 0.76 C ATOM 627 OG1 THR 36 -7.716 14.558 0.675 1.00 0.76 O ATOM 628 CG2 THR 36 -8.942 12.521 0.654 1.00 0.76 C ATOM 629 N LYS 37 -5.663 10.882 -0.627 1.00 0.66 N ATOM 630 CA LYS 37 -5.464 9.518 -1.102 1.00 0.66 C ATOM 631 C LYS 37 -4.549 8.722 -0.176 1.00 0.66 C ATOM 632 O LYS 37 -4.843 7.576 0.139 1.00 0.66 O ATOM 633 CB LYS 37 -4.921 9.535 -2.534 1.00 0.66 C ATOM 634 CG LYS 37 -5.036 8.204 -3.268 1.00 0.66 C ATOM 635 CD LYS 37 -6.492 7.868 -3.597 1.00 0.66 C ATOM 636 CE LYS 37 -6.601 6.549 -4.332 1.00 0.66 C ATOM 637 NZ LYS 37 -8.037 6.226 -4.594 1.00 0.66 N ATOM 638 N TYR 38 -3.477 9.326 0.314 1.00 0.75 N ATOM 639 CA TYR 38 -2.564 8.642 1.231 1.00 0.75 C ATOM 640 C TYR 38 -3.221 8.338 2.571 1.00 0.75 C ATOM 641 O TYR 38 -2.937 7.315 3.195 1.00 0.75 O ATOM 642 CB TYR 38 -1.320 9.494 1.486 1.00 0.75 C ATOM 643 CG TYR 38 -0.403 9.649 0.288 1.00 0.75 C ATOM 644 CD1 TYR 38 0.096 10.917 -0.079 1.00 0.75 C ATOM 645 CD2 TYR 38 -0.015 8.530 -0.479 1.00 0.75 C ATOM 646 CE1 TYR 38 0.939 11.068 -1.213 1.00 0.75 C ATOM 647 CE2 TYR 38 0.845 8.673 -1.594 1.00 0.75 C ATOM 648 CZ TYR 38 1.305 9.940 -1.954 1.00 0.75 C ATOM 649 OH TYR 38 2.127 10.052 -3.044 1.00 0.75 O ATOM 650 N THR 39 -4.141 9.197 2.982 1.00 0.61 N ATOM 651 CA THR 39 -4.925 8.976 4.194 1.00 0.61 C ATOM 652 C THR 39 -5.807 7.737 4.044 1.00 0.61 C ATOM 653 O THR 39 -5.965 6.943 4.979 1.00 0.61 O ATOM 654 CB THR 39 -5.850 10.191 4.462 1.00 0.61 C ATOM 655 OG1 THR 39 -5.076 11.391 4.565 1.00 0.61 O ATOM 656 CG2 THR 39 -6.621 10.054 5.747 1.00 0.61 C ATOM 657 N LEU 40 -6.400 7.577 2.872 1.00 0.52 N ATOM 658 CA LEU 40 -7.360 6.505 2.617 1.00 0.52 C ATOM 659 C LEU 40 -6.782 5.148 2.217 1.00 0.52 C ATOM 660 O LEU 40 -7.446 4.123 2.392 1.00 0.52 O ATOM 661 CB LEU 40 -8.310 6.974 1.513 1.00 0.52 C ATOM 662 CG LEU 40 -9.259 8.138 1.838 1.00 0.52 C ATOM 663 CD1 LEU 40 -9.950 8.576 0.553 1.00 0.52 C ATOM 664 CD2 LEU 40 -10.297 7.767 2.898 1.00 0.52 C ATOM 665 N CYS 41 -5.570 5.113 1.686 1.00 0.47 N ATOM 666 CA CYS 41 -4.934 3.847 1.294 1.00 0.47 C ATOM 667 C CYS 41 -4.457 3.027 2.493 1.00 0.47 C ATOM 668 O CYS 41 -4.018 1.868 2.314 1.00 0.47 O ATOM 669 OXT CYS 41 -4.554 3.537 3.620 1.00 0.47 O ATOM 670 CB CYS 41 -3.768 4.140 0.353 1.00 0.47 C ATOM 671 SG CYS 41 -4.337 4.846 -1.201 1.00 0.47 S TER 672 CYS A 41 END