####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS488_4-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS488_4-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 4 - 32 4.96 8.94 LONGEST_CONTINUOUS_SEGMENT: 29 5 - 33 4.96 9.11 LCS_AVERAGE: 59.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 20 - 34 1.51 12.92 LCS_AVERAGE: 22.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 0.64 11.88 LCS_AVERAGE: 15.86 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 6 17 3 3 4 5 5 7 9 11 14 17 24 26 28 30 34 35 37 38 39 39 LCS_GDT V 3 V 3 4 6 17 3 4 4 5 10 12 16 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT Q 4 Q 4 4 6 29 3 4 5 9 12 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT G 5 G 5 4 6 29 0 3 6 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT P 6 P 6 4 6 29 3 4 4 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT W 7 W 7 5 10 29 3 4 9 9 12 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT V 8 V 8 8 10 29 3 4 9 9 9 9 10 11 13 17 24 29 31 32 34 36 37 38 39 40 LCS_GDT G 9 G 9 8 10 29 6 7 9 9 10 14 16 21 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT S 10 S 10 8 10 29 6 7 9 9 9 9 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT S 11 S 11 8 10 29 6 7 9 9 9 9 11 16 20 24 27 29 31 32 34 36 37 38 39 40 LCS_GDT Y 12 Y 12 8 10 29 6 7 9 9 9 9 11 16 21 25 28 29 31 32 34 36 37 38 39 40 LCS_GDT V 13 V 13 8 10 29 6 7 9 9 9 14 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT A 14 A 14 8 10 29 6 7 9 9 9 9 10 12 17 21 24 27 30 32 34 36 37 38 39 40 LCS_GDT E 15 E 15 8 10 29 4 7 9 9 9 9 11 13 16 18 19 27 29 32 32 34 37 38 39 40 LCS_GDT T 16 T 16 4 10 29 3 4 4 6 8 9 11 13 14 17 19 21 21 24 32 34 34 36 39 40 LCS_GDT G 17 G 17 4 5 29 3 4 4 6 8 9 11 13 15 18 19 21 24 29 32 34 34 36 38 40 LCS_GDT Q 18 Q 18 4 5 29 3 3 4 6 8 9 11 13 18 23 25 29 31 32 34 36 37 38 39 40 LCS_GDT N 19 N 19 4 13 29 3 3 4 5 5 9 11 17 23 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT W 20 W 20 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT A 21 A 21 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT S 22 S 22 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT L 23 L 23 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT A 24 A 24 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT A 25 A 25 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT N 26 N 26 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT E 27 E 27 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT L 28 L 28 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT R 29 R 29 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT V 30 V 30 12 15 29 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT T 31 T 31 12 15 29 4 10 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT E 32 E 32 8 15 29 3 6 8 13 14 15 15 18 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT R 33 R 33 8 15 29 3 6 8 13 14 15 15 18 23 25 28 29 31 32 34 36 37 38 39 40 LCS_GDT P 34 P 34 6 15 23 1 6 8 12 13 15 15 15 17 18 22 26 28 30 34 35 37 38 39 40 LCS_GDT F 35 F 35 3 4 23 3 3 3 5 10 14 16 21 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT W 36 W 36 3 4 23 3 5 8 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT I 37 I 37 3 4 23 3 3 3 4 11 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT S 38 S 38 3 6 23 3 3 5 5 9 13 18 22 24 26 28 29 31 32 34 36 37 38 39 40 LCS_GDT S 39 S 39 3 6 23 3 3 3 4 5 7 7 10 14 15 18 22 28 32 34 36 37 38 39 40 LCS_GDT F 40 F 40 4 6 23 3 4 5 5 9 10 11 11 14 15 17 19 25 28 32 36 37 38 39 40 LCS_GDT I 41 I 41 4 6 23 3 4 5 5 9 10 11 11 14 15 18 23 28 32 34 36 37 38 39 40 LCS_GDT G 42 G 42 4 6 15 3 4 5 5 9 10 11 11 13 15 18 22 28 29 34 36 37 38 39 40 LCS_GDT R 43 R 43 4 6 15 3 4 5 5 9 10 11 11 12 14 14 14 14 17 20 24 28 31 34 35 LCS_GDT S 44 S 44 3 6 15 3 3 4 5 9 10 11 11 12 14 14 14 14 14 14 15 16 17 18 31 LCS_GDT K 45 K 45 3 6 15 0 3 4 5 9 10 11 11 12 14 14 14 14 14 14 15 15 17 18 18 LCS_AVERAGE LCS_A: 32.59 ( 15.86 22.62 59.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 11 12 13 15 15 19 22 24 26 28 29 31 32 34 36 37 38 39 40 GDT PERCENT_AT 25.00 25.00 27.27 29.55 34.09 34.09 43.18 50.00 54.55 59.09 63.64 65.91 70.45 72.73 77.27 81.82 84.09 86.36 88.64 90.91 GDT RMS_LOCAL 0.32 0.32 0.64 1.19 1.64 1.51 2.40 2.71 2.93 3.20 3.46 3.63 4.03 4.26 4.84 5.20 5.22 5.38 5.60 5.98 GDT RMS_ALL_AT 11.60 11.60 11.88 12.83 9.59 12.92 8.84 8.63 8.61 8.52 8.43 8.35 8.18 8.13 7.89 7.66 7.78 7.70 7.63 7.61 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: E 15 E 15 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 7.674 0 0.033 0.040 9.318 0.000 0.000 - LGA V 3 V 3 3.982 0 0.026 1.145 5.030 16.364 16.104 2.650 LGA Q 4 Q 4 2.250 0 0.390 0.841 6.080 37.273 19.798 6.080 LGA G 5 G 5 2.899 0 0.200 0.200 3.698 32.727 32.727 - LGA P 6 P 6 3.789 0 0.676 0.586 5.671 16.818 9.870 5.421 LGA W 7 W 7 2.653 0 0.472 1.392 7.445 18.182 10.130 3.725 LGA V 8 V 8 7.923 0 0.048 1.211 12.324 0.000 0.000 12.324 LGA G 9 G 9 4.927 0 0.228 0.228 5.273 14.091 14.091 - LGA S 10 S 10 3.618 0 0.027 0.214 6.359 15.455 10.303 5.662 LGA S 11 S 11 8.291 0 0.153 0.586 11.138 0.000 0.000 11.138 LGA Y 12 Y 12 6.730 0 0.049 1.213 12.386 0.455 0.152 12.386 LGA V 13 V 13 3.243 0 0.013 0.041 6.787 9.091 6.753 6.787 LGA A 14 A 14 10.144 0 0.026 0.025 12.642 0.000 0.000 - LGA E 15 E 15 12.681 0 0.361 0.810 16.535 0.000 0.000 16.535 LGA T 16 T 16 14.435 0 0.644 1.020 16.342 0.000 0.000 13.294 LGA G 17 G 17 15.060 0 0.090 0.090 15.060 0.000 0.000 - LGA Q 18 Q 18 9.200 0 0.528 0.924 16.677 0.000 0.000 13.787 LGA N 19 N 19 5.572 0 0.022 1.013 10.306 5.000 2.500 10.306 LGA W 20 W 20 2.017 0 0.604 1.266 13.617 48.182 14.156 13.617 LGA A 21 A 21 2.367 0 0.044 0.045 2.767 44.545 41.091 - LGA S 22 S 22 1.369 0 0.014 0.628 2.908 70.000 59.697 2.908 LGA L 23 L 23 0.690 0 0.029 0.151 1.463 73.636 71.591 1.463 LGA A 24 A 24 1.882 0 0.053 0.052 2.426 51.364 48.727 - LGA A 25 A 25 1.664 0 0.030 0.029 2.173 47.727 51.273 - LGA N 26 N 26 1.842 0 0.043 0.081 2.931 45.455 48.182 1.506 LGA E 27 E 27 3.253 0 0.030 0.817 4.217 15.455 23.838 2.581 LGA L 28 L 28 3.573 0 0.049 0.104 4.233 14.545 12.045 3.764 LGA R 29 R 29 2.890 0 0.052 1.545 11.229 25.000 11.405 11.229 LGA V 30 V 30 2.010 0 0.180 1.151 5.420 60.000 42.078 5.420 LGA T 31 T 31 1.967 0 0.357 0.342 4.808 38.182 26.494 3.872 LGA E 32 E 32 5.292 0 0.350 1.116 7.908 4.545 2.020 7.908 LGA R 33 R 33 6.182 0 0.064 1.326 9.925 0.000 3.140 7.529 LGA P 34 P 34 8.570 0 0.658 0.603 10.068 0.000 0.000 10.068 LGA F 35 F 35 5.373 0 0.661 1.215 7.106 7.273 2.645 6.216 LGA W 36 W 36 0.895 0 0.525 1.041 9.577 46.818 22.857 9.577 LGA I 37 I 37 3.024 0 0.657 0.638 5.816 20.000 18.864 5.274 LGA S 38 S 38 3.937 0 0.673 0.601 6.972 7.273 8.182 4.814 LGA S 39 S 39 11.037 0 0.125 0.148 14.026 0.000 0.000 13.848 LGA F 40 F 40 12.110 0 0.195 1.041 20.054 0.000 0.000 20.054 LGA I 41 I 41 10.215 0 0.114 0.707 11.119 0.000 0.000 7.828 LGA G 42 G 42 12.525 0 0.396 0.396 17.014 0.000 0.000 - LGA R 43 R 43 18.107 0 0.047 1.105 26.025 0.000 0.000 26.025 LGA S 44 S 44 21.770 0 0.683 0.799 23.881 0.000 0.000 23.449 LGA K 45 K 45 23.222 0 0.690 0.791 26.503 0.000 0.000 26.503 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 7.376 7.305 8.535 17.851 14.334 6.649 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 22 2.71 46.591 40.674 0.784 LGA_LOCAL RMSD: 2.706 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.627 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 7.376 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.099799 * X + -0.826561 * Y + 0.553929 * Z + 0.612542 Y_new = 0.305878 * X + -0.555236 * Y + -0.773403 * Z + 46.782394 Z_new = 0.946826 * X + 0.092250 * Y + 0.308239 * Z + 11.945771 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.886176 -1.243222 0.290797 [DEG: 108.0699 -71.2314 16.6615 ] ZXZ: 0.621531 1.257455 1.473672 [DEG: 35.6111 72.0469 84.4352 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS488_4-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS488_4-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 22 2.71 40.674 7.38 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS488_4-D1 PFRMAT TS TARGET T0953s2 MODEL 4 PARENT 2hh3_A ATOM 20 N ALA 2 9.300 44.096 11.869 1.00 0.00 N ATOM 21 CA ALA 2 8.695 43.253 10.841 1.00 0.00 C ATOM 22 C ALA 2 9.605 42.075 10.480 1.00 0.00 C ATOM 23 O ALA 2 10.797 42.094 10.793 1.00 0.00 O ATOM 24 CB ALA 2 8.397 44.081 9.613 1.00 0.00 C ATOM 30 N VAL 3 9.047 41.055 9.814 1.00 0.00 N ATOM 31 CA VAL 3 9.850 39.896 9.415 1.00 0.00 C ATOM 32 C VAL 3 9.745 39.587 7.918 1.00 0.00 C ATOM 33 O VAL 3 8.666 39.593 7.322 1.00 0.00 O ATOM 34 CB VAL 3 9.436 38.643 10.227 1.00 0.00 C ATOM 35 CG1 VAL 3 7.973 38.326 9.995 1.00 0.00 C ATOM 36 CG2 VAL 3 10.295 37.448 9.829 1.00 0.00 C ATOM 46 N GLN 4 10.897 39.285 7.325 1.00 0.00 N ATOM 47 CA GLN 4 11.048 39.001 5.898 1.00 0.00 C ATOM 48 C GLN 4 10.617 37.610 5.479 1.00 0.00 C ATOM 49 O GLN 4 11.451 36.797 5.083 1.00 0.00 O ATOM 50 CB GLN 4 12.500 39.214 5.500 1.00 0.00 C ATOM 51 CG GLN 4 12.979 40.648 5.588 1.00 0.00 C ATOM 52 CD GLN 4 14.449 40.779 5.242 1.00 0.00 C ATOM 53 OE1 GLN 4 15.255 41.216 6.070 1.00 0.00 O ATOM 54 NE2 GLN 4 14.811 40.390 4.024 1.00 0.00 N ATOM 63 N GLY 5 9.323 37.340 5.568 1.00 0.00 N ATOM 64 CA GLY 5 8.771 36.048 5.182 1.00 0.00 C ATOM 65 C GLY 5 8.692 35.877 3.664 1.00 0.00 C ATOM 66 O GLY 5 8.016 36.663 3.012 1.00 0.00 O ATOM 70 N PRO 6 9.355 34.864 3.086 1.00 0.00 N ATOM 71 CA PRO 6 9.355 34.497 1.674 1.00 0.00 C ATOM 72 C PRO 6 7.955 34.173 1.203 1.00 0.00 C ATOM 73 O PRO 6 7.212 33.489 1.909 1.00 0.00 O ATOM 74 CB PRO 6 10.257 33.261 1.618 1.00 0.00 C ATOM 75 CG PRO 6 11.153 33.402 2.799 1.00 0.00 C ATOM 76 CD PRO 6 10.283 34.015 3.858 1.00 0.00 C ATOM 84 N TRP 7 7.614 34.603 -0.009 1.00 0.00 N ATOM 85 CA TRP 7 6.300 34.294 -0.566 1.00 0.00 C ATOM 86 C TRP 7 6.053 32.797 -0.615 1.00 0.00 C ATOM 87 O TRP 7 4.953 32.327 -0.320 1.00 0.00 O ATOM 88 CB TRP 7 6.123 34.861 -1.960 1.00 0.00 C ATOM 89 CG TRP 7 4.812 34.446 -2.555 1.00 0.00 C ATOM 90 CD1 TRP 7 3.602 35.043 -2.385 1.00 0.00 C ATOM 91 CD2 TRP 7 4.579 33.317 -3.429 1.00 0.00 C ATOM 92 NE1 TRP 7 2.635 34.366 -3.089 1.00 0.00 N ATOM 93 CE2 TRP 7 3.219 33.310 -3.737 1.00 0.00 C ATOM 94 CE3 TRP 7 5.409 32.335 -3.969 1.00 0.00 C ATOM 95 CZ2 TRP 7 2.660 32.349 -4.564 1.00 0.00 C ATOM 96 CZ3 TRP 7 4.854 31.369 -4.791 1.00 0.00 C ATOM 97 CH2 TRP 7 3.515 31.375 -5.083 1.00 0.00 C ATOM 108 N VAL 8 7.077 32.036 -0.975 1.00 0.00 N ATOM 109 CA VAL 8 6.944 30.592 -1.037 1.00 0.00 C ATOM 110 C VAL 8 6.665 29.968 0.343 1.00 0.00 C ATOM 111 O VAL 8 6.136 28.858 0.428 1.00 0.00 O ATOM 112 CB VAL 8 8.218 29.970 -1.639 1.00 0.00 C ATOM 113 CG1 VAL 8 8.431 30.484 -3.058 1.00 0.00 C ATOM 114 CG2 VAL 8 9.424 30.305 -0.770 1.00 0.00 C ATOM 124 N GLY 9 7.017 30.676 1.420 1.00 0.00 N ATOM 125 CA GLY 9 6.759 30.214 2.771 1.00 0.00 C ATOM 126 C GLY 9 5.443 30.775 3.333 1.00 0.00 C ATOM 127 O GLY 9 4.908 30.249 4.312 1.00 0.00 O ATOM 131 N SER 10 4.900 31.820 2.683 1.00 0.00 N ATOM 132 CA SER 10 3.662 32.458 3.142 1.00 0.00 C ATOM 133 C SER 10 2.456 31.527 3.042 1.00 0.00 C ATOM 134 O SER 10 1.457 31.737 3.725 1.00 0.00 O ATOM 135 CB SER 10 3.368 33.712 2.335 1.00 0.00 C ATOM 136 OG SER 10 2.955 33.392 1.035 1.00 0.00 O ATOM 142 N SER 11 2.561 30.479 2.218 1.00 0.00 N ATOM 143 CA SER 11 1.499 29.484 2.093 1.00 0.00 C ATOM 144 C SER 11 1.428 28.569 3.326 1.00 0.00 C ATOM 145 O SER 11 0.443 27.860 3.515 1.00 0.00 O ATOM 146 CB SER 11 1.702 28.649 0.841 1.00 0.00 C ATOM 147 OG SER 11 2.841 27.842 0.938 1.00 0.00 O ATOM 153 N TYR 12 2.460 28.610 4.170 1.00 0.00 N ATOM 154 CA TYR 12 2.517 27.834 5.397 1.00 0.00 C ATOM 155 C TYR 12 2.201 28.730 6.579 1.00 0.00 C ATOM 156 O TYR 12 1.778 28.269 7.642 1.00 0.00 O ATOM 157 CB TYR 12 3.890 27.199 5.545 1.00 0.00 C ATOM 158 CG TYR 12 4.178 26.196 4.462 1.00 0.00 C ATOM 159 CD1 TYR 12 4.889 26.578 3.336 1.00 0.00 C ATOM 160 CD2 TYR 12 3.726 24.895 4.590 1.00 0.00 C ATOM 161 CE1 TYR 12 5.151 25.657 2.345 1.00 0.00 C ATOM 162 CE2 TYR 12 3.985 23.976 3.600 1.00 0.00 C ATOM 163 CZ TYR 12 4.690 24.353 2.484 1.00 0.00 C ATOM 164 OH TYR 12 4.936 23.437 1.501 1.00 0.00 O ATOM 174 N VAL 13 2.401 30.028 6.387 1.00 0.00 N ATOM 175 CA VAL 13 2.002 31.004 7.385 1.00 0.00 C ATOM 176 C VAL 13 0.494 31.185 7.324 1.00 0.00 C ATOM 177 O VAL 13 -0.189 31.188 8.339 1.00 0.00 O ATOM 178 CB VAL 13 2.703 32.351 7.164 1.00 0.00 C ATOM 179 CG1 VAL 13 2.136 33.378 8.127 1.00 0.00 C ATOM 180 CG2 VAL 13 4.197 32.180 7.373 1.00 0.00 C ATOM 190 N ALA 14 -0.022 31.358 6.121 1.00 0.00 N ATOM 191 CA ALA 14 -1.447 31.518 5.920 1.00 0.00 C ATOM 192 C ALA 14 -2.208 30.186 5.983 1.00 0.00 C ATOM 193 O ALA 14 -3.318 30.124 6.523 1.00 0.00 O ATOM 194 CB ALA 14 -1.689 32.182 4.575 1.00 0.00 C ATOM 200 N GLU 15 -1.605 29.129 5.423 1.00 0.00 N ATOM 201 CA GLU 15 -2.254 27.818 5.288 1.00 0.00 C ATOM 202 C GLU 15 -3.508 27.963 4.422 1.00 0.00 C ATOM 203 O GLU 15 -3.395 28.141 3.207 1.00 0.00 O ATOM 204 CB GLU 15 -2.564 27.185 6.654 1.00 0.00 C ATOM 205 CG GLU 15 -1.339 26.658 7.394 1.00 0.00 C ATOM 206 CD GLU 15 -0.763 25.425 6.743 1.00 0.00 C ATOM 207 OE1 GLU 15 -1.520 24.527 6.468 1.00 0.00 O ATOM 208 OE2 GLU 15 0.422 25.365 6.515 1.00 0.00 O ATOM 215 N THR 16 -4.692 27.892 5.024 1.00 0.00 N ATOM 216 CA THR 16 -5.927 28.062 4.265 1.00 0.00 C ATOM 217 C THR 16 -6.714 29.258 4.777 1.00 0.00 C ATOM 218 O THR 16 -7.070 29.318 5.955 1.00 0.00 O ATOM 219 CB THR 16 -6.811 26.801 4.329 1.00 0.00 C ATOM 220 OG1 THR 16 -6.098 25.686 3.782 1.00 0.00 O ATOM 221 CG2 THR 16 -8.094 27.004 3.537 1.00 0.00 C ATOM 229 N GLY 17 -6.958 30.227 3.894 1.00 0.00 N ATOM 230 CA GLY 17 -7.755 31.414 4.214 1.00 0.00 C ATOM 231 C GLY 17 -7.060 32.358 5.192 1.00 0.00 C ATOM 232 O GLY 17 -7.718 33.165 5.847 1.00 0.00 O ATOM 236 N GLN 18 -5.735 32.234 5.305 1.00 0.00 N ATOM 237 CA GLN 18 -4.925 32.995 6.256 1.00 0.00 C ATOM 238 C GLN 18 -5.383 32.751 7.696 1.00 0.00 C ATOM 239 O GLN 18 -5.211 33.609 8.570 1.00 0.00 O ATOM 240 CB GLN 18 -4.968 34.486 5.907 1.00 0.00 C ATOM 241 CG GLN 18 -4.448 34.789 4.511 1.00 0.00 C ATOM 242 CD GLN 18 -4.440 36.262 4.179 1.00 0.00 C ATOM 243 OE1 GLN 18 -4.554 37.108 5.062 1.00 0.00 O ATOM 244 NE2 GLN 18 -4.306 36.579 2.896 1.00 0.00 N ATOM 253 N ASN 19 -5.921 31.554 7.945 1.00 0.00 N ATOM 254 CA ASN 19 -6.418 31.199 9.255 1.00 0.00 C ATOM 255 C ASN 19 -5.314 30.809 10.214 1.00 0.00 C ATOM 256 O ASN 19 -5.448 31.051 11.409 1.00 0.00 O ATOM 257 CB ASN 19 -7.443 30.092 9.140 1.00 0.00 C ATOM 258 CG ASN 19 -8.746 30.581 8.562 1.00 0.00 C ATOM 259 OD1 ASN 19 -9.101 31.757 8.710 1.00 0.00 O ATOM 260 ND2 ASN 19 -9.464 29.706 7.910 1.00 0.00 N ATOM 267 N TRP 20 -4.226 30.211 9.718 1.00 0.00 N ATOM 268 CA TRP 20 -3.149 29.839 10.630 1.00 0.00 C ATOM 269 C TRP 20 -2.518 31.095 11.185 1.00 0.00 C ATOM 270 O TRP 20 -2.214 31.170 12.373 1.00 0.00 O ATOM 271 CB TRP 20 -2.076 28.991 9.971 1.00 0.00 C ATOM 272 CG TRP 20 -1.065 28.488 10.967 1.00 0.00 C ATOM 273 CD1 TRP 20 -1.133 27.295 11.621 1.00 0.00 C ATOM 274 CD2 TRP 20 0.131 29.148 11.470 1.00 0.00 C ATOM 275 NE1 TRP 20 -0.069 27.159 12.479 1.00 0.00 N ATOM 276 CE2 TRP 20 0.712 28.283 12.400 1.00 0.00 C ATOM 277 CE3 TRP 20 0.742 30.383 11.219 1.00 0.00 C ATOM 278 CZ2 TRP 20 1.875 28.610 13.082 1.00 0.00 C ATOM 279 CZ3 TRP 20 1.907 30.706 11.897 1.00 0.00 C ATOM 280 CH2 TRP 20 2.461 29.845 12.806 1.00 0.00 C ATOM 291 N ALA 21 -2.315 32.077 10.306 1.00 0.00 N ATOM 292 CA ALA 21 -1.753 33.361 10.683 1.00 0.00 C ATOM 293 C ALA 21 -2.655 34.054 11.693 1.00 0.00 C ATOM 294 O ALA 21 -2.166 34.643 12.658 1.00 0.00 O ATOM 295 CB ALA 21 -1.558 34.224 9.452 1.00 0.00 C ATOM 301 N SER 22 -3.974 33.955 11.486 1.00 0.00 N ATOM 302 CA SER 22 -4.934 34.519 12.424 1.00 0.00 C ATOM 303 C SER 22 -4.830 33.828 13.786 1.00 0.00 C ATOM 304 O SER 22 -4.867 34.489 14.825 1.00 0.00 O ATOM 305 CB SER 22 -6.343 34.379 11.874 1.00 0.00 C ATOM 306 OG SER 22 -6.508 35.141 10.710 1.00 0.00 O ATOM 312 N LEU 23 -4.670 32.500 13.770 1.00 0.00 N ATOM 313 CA LEU 23 -4.510 31.725 14.995 1.00 0.00 C ATOM 314 C LEU 23 -3.216 32.075 15.700 1.00 0.00 C ATOM 315 O LEU 23 -3.188 32.156 16.927 1.00 0.00 O ATOM 316 CB LEU 23 -4.535 30.223 14.688 1.00 0.00 C ATOM 317 CG LEU 23 -5.886 29.649 14.256 1.00 0.00 C ATOM 318 CD1 LEU 23 -5.692 28.212 13.794 1.00 0.00 C ATOM 319 CD2 LEU 23 -6.855 29.722 15.425 1.00 0.00 C ATOM 331 N ALA 24 -2.157 32.307 14.921 1.00 0.00 N ATOM 332 CA ALA 24 -0.882 32.704 15.484 1.00 0.00 C ATOM 333 C ALA 24 -1.041 34.039 16.174 1.00 0.00 C ATOM 334 O ALA 24 -0.600 34.198 17.307 1.00 0.00 O ATOM 335 CB ALA 24 0.183 32.779 14.404 1.00 0.00 C ATOM 341 N ALA 25 -1.724 34.980 15.522 1.00 0.00 N ATOM 342 CA ALA 25 -1.953 36.293 16.103 1.00 0.00 C ATOM 343 C ALA 25 -2.717 36.177 17.419 1.00 0.00 C ATOM 344 O ALA 25 -2.417 36.872 18.389 1.00 0.00 O ATOM 345 CB ALA 25 -2.710 37.184 15.127 1.00 0.00 C ATOM 351 N ASN 26 -3.693 35.268 17.466 1.00 0.00 N ATOM 352 CA ASN 26 -4.455 35.066 18.687 1.00 0.00 C ATOM 353 C ASN 26 -3.575 34.529 19.817 1.00 0.00 C ATOM 354 O ASN 26 -3.608 35.044 20.936 1.00 0.00 O ATOM 355 CB ASN 26 -5.617 34.127 18.428 1.00 0.00 C ATOM 356 CG ASN 26 -6.711 34.772 17.626 1.00 0.00 C ATOM 357 OD1 ASN 26 -6.818 36.002 17.562 1.00 0.00 O ATOM 358 ND2 ASN 26 -7.531 33.960 17.010 1.00 0.00 N ATOM 365 N GLU 27 -2.738 33.539 19.510 1.00 0.00 N ATOM 366 CA GLU 27 -1.848 32.951 20.509 1.00 0.00 C ATOM 367 C GLU 27 -0.758 33.925 20.953 1.00 0.00 C ATOM 368 O GLU 27 -0.312 33.896 22.100 1.00 0.00 O ATOM 369 CB GLU 27 -1.222 31.667 19.962 1.00 0.00 C ATOM 370 CG GLU 27 -2.216 30.528 19.779 1.00 0.00 C ATOM 371 CD GLU 27 -1.588 29.271 19.247 1.00 0.00 C ATOM 372 OE1 GLU 27 -0.418 29.289 18.950 1.00 0.00 O ATOM 373 OE2 GLU 27 -2.281 28.285 19.139 1.00 0.00 O ATOM 380 N LEU 28 -0.354 34.799 20.037 1.00 0.00 N ATOM 381 CA LEU 28 0.661 35.809 20.273 1.00 0.00 C ATOM 382 C LEU 28 0.116 37.078 20.918 1.00 0.00 C ATOM 383 O LEU 28 0.886 37.992 21.209 1.00 0.00 O ATOM 384 CB LEU 28 1.319 36.140 18.943 1.00 0.00 C ATOM 385 CG LEU 28 2.095 34.978 18.330 1.00 0.00 C ATOM 386 CD1 LEU 28 2.494 35.334 16.905 1.00 0.00 C ATOM 387 CD2 LEU 28 3.305 34.697 19.208 1.00 0.00 C ATOM 399 N ARG 29 -1.204 37.147 21.125 1.00 0.00 N ATOM 400 CA ARG 29 -1.844 38.302 21.741 1.00 0.00 C ATOM 401 C ARG 29 -1.631 39.592 20.965 1.00 0.00 C ATOM 402 O ARG 29 -1.392 40.647 21.558 1.00 0.00 O ATOM 403 CB ARG 29 -1.342 38.490 23.167 1.00 0.00 C ATOM 404 CG ARG 29 -1.623 37.325 24.098 1.00 0.00 C ATOM 405 CD ARG 29 -1.126 37.596 25.469 1.00 0.00 C ATOM 406 NE ARG 29 -1.359 36.476 26.364 1.00 0.00 N ATOM 407 CZ ARG 29 -0.923 36.411 27.636 1.00 0.00 C ATOM 408 NH1 ARG 29 -0.237 37.410 28.148 1.00 0.00 N ATOM 409 NH2 ARG 29 -1.185 35.344 28.369 1.00 0.00 N ATOM 423 N VAL 30 -1.740 39.513 19.642 1.00 0.00 N ATOM 424 CA VAL 30 -1.592 40.685 18.791 1.00 0.00 C ATOM 425 C VAL 30 -2.786 40.801 17.863 1.00 0.00 C ATOM 426 O VAL 30 -3.471 39.812 17.608 1.00 0.00 O ATOM 427 CB VAL 30 -0.297 40.611 17.970 1.00 0.00 C ATOM 428 CG1 VAL 30 0.910 40.591 18.891 1.00 0.00 C ATOM 429 CG2 VAL 30 -0.302 39.375 17.097 1.00 0.00 C ATOM 439 N THR 31 -3.042 42.010 17.365 1.00 0.00 N ATOM 440 CA THR 31 -4.108 42.209 16.388 1.00 0.00 C ATOM 441 C THR 31 -3.563 41.640 15.096 1.00 0.00 C ATOM 442 O THR 31 -3.911 40.528 14.703 1.00 0.00 O ATOM 443 CB THR 31 -4.505 43.698 16.239 1.00 0.00 C ATOM 444 OG1 THR 31 -3.369 44.471 15.831 1.00 0.00 O ATOM 445 CG2 THR 31 -5.024 44.235 17.562 1.00 0.00 C ATOM 453 N GLU 32 -2.689 42.417 14.465 1.00 0.00 N ATOM 454 CA GLU 32 -1.889 41.987 13.331 1.00 0.00 C ATOM 455 C GLU 32 -2.597 41.061 12.365 1.00 0.00 C ATOM 456 O GLU 32 -2.253 39.882 12.265 1.00 0.00 O ATOM 457 CB GLU 32 -0.646 41.292 13.863 1.00 0.00 C ATOM 458 CG GLU 32 0.472 41.128 12.864 1.00 0.00 C ATOM 459 CD GLU 32 1.641 40.440 13.481 1.00 0.00 C ATOM 460 OE1 GLU 32 2.092 40.892 14.507 1.00 0.00 O ATOM 461 OE2 GLU 32 2.080 39.455 12.937 1.00 0.00 O ATOM 468 N ARG 33 -3.542 41.591 11.615 1.00 0.00 N ATOM 469 CA ARG 33 -4.236 40.759 10.664 1.00 0.00 C ATOM 470 C ARG 33 -3.296 40.454 9.513 1.00 0.00 C ATOM 471 O ARG 33 -2.531 41.320 9.093 1.00 0.00 O ATOM 472 CB ARG 33 -5.481 41.450 10.130 1.00 0.00 C ATOM 473 CG ARG 33 -6.529 41.777 11.178 1.00 0.00 C ATOM 474 CD ARG 33 -7.156 40.554 11.731 1.00 0.00 C ATOM 475 NE ARG 33 -7.881 39.804 10.717 1.00 0.00 N ATOM 476 CZ ARG 33 -9.148 40.062 10.338 1.00 0.00 C ATOM 477 NH1 ARG 33 -9.806 41.058 10.889 1.00 0.00 N ATOM 478 NH2 ARG 33 -9.735 39.316 9.417 1.00 0.00 N ATOM 492 N PRO 34 -3.370 39.244 8.951 1.00 0.00 N ATOM 493 CA PRO 34 -2.587 38.729 7.833 1.00 0.00 C ATOM 494 C PRO 34 -2.996 39.407 6.527 1.00 0.00 C ATOM 495 O PRO 34 -2.300 39.308 5.515 1.00 0.00 O ATOM 496 CB PRO 34 -2.900 37.235 7.845 1.00 0.00 C ATOM 497 CG PRO 34 -4.242 37.127 8.476 1.00 0.00 C ATOM 498 CD PRO 34 -4.265 38.213 9.512 1.00 0.00 C ATOM 506 N PHE 35 -4.104 40.144 6.587 1.00 0.00 N ATOM 507 CA PHE 35 -4.631 40.903 5.484 1.00 0.00 C ATOM 508 C PHE 35 -4.060 42.327 5.487 1.00 0.00 C ATOM 509 O PHE 35 -4.410 43.138 4.628 1.00 0.00 O ATOM 510 CB PHE 35 -6.149 40.963 5.616 1.00 0.00 C ATOM 511 CG PHE 35 -6.807 39.617 5.551 1.00 0.00 C ATOM 512 CD1 PHE 35 -7.086 38.923 6.721 1.00 0.00 C ATOM 513 CD2 PHE 35 -7.157 39.042 4.339 1.00 0.00 C ATOM 514 CE1 PHE 35 -7.691 37.679 6.677 1.00 0.00 C ATOM 515 CE2 PHE 35 -7.766 37.802 4.295 1.00 0.00 C ATOM 516 CZ PHE 35 -8.032 37.119 5.465 1.00 0.00 C ATOM 526 N TRP 36 -3.157 42.622 6.439 1.00 0.00 N ATOM 527 CA TRP 36 -2.507 43.926 6.518 1.00 0.00 C ATOM 528 C TRP 36 -1.025 43.801 6.162 1.00 0.00 C ATOM 529 O TRP 36 -0.214 44.645 6.546 1.00 0.00 O ATOM 530 CB TRP 36 -2.603 44.509 7.934 1.00 0.00 C ATOM 531 CG TRP 36 -3.986 44.790 8.439 1.00 0.00 C ATOM 532 CD1 TRP 36 -5.135 44.912 7.716 1.00 0.00 C ATOM 533 CD2 TRP 36 -4.363 44.990 9.825 1.00 0.00 C ATOM 534 NE1 TRP 36 -6.196 45.172 8.552 1.00 0.00 N ATOM 535 CE2 TRP 36 -5.737 45.219 9.847 1.00 0.00 C ATOM 536 CE3 TRP 36 -3.646 44.991 11.028 1.00 0.00 C ATOM 537 CZ2 TRP 36 -6.426 45.446 11.032 1.00 0.00 C ATOM 538 CZ3 TRP 36 -4.334 45.213 12.216 1.00 0.00 C ATOM 539 CH2 TRP 36 -5.687 45.434 12.217 1.00 0.00 C ATOM 550 N ILE 37 -0.683 42.732 5.441 1.00 0.00 N ATOM 551 CA ILE 37 0.675 42.461 4.985 1.00 0.00 C ATOM 552 C ILE 37 1.153 43.553 4.032 1.00 0.00 C ATOM 553 O ILE 37 0.341 44.176 3.347 1.00 0.00 O ATOM 554 CB ILE 37 0.748 41.088 4.295 1.00 0.00 C ATOM 555 CG1 ILE 37 2.206 40.650 4.131 1.00 0.00 C ATOM 556 CG2 ILE 37 0.048 41.144 2.945 1.00 0.00 C ATOM 557 CD1 ILE 37 2.343 39.204 3.754 1.00 0.00 C ATOM 569 N SER 38 2.462 43.800 3.995 1.00 0.00 N ATOM 570 CA SER 38 2.994 44.815 3.093 1.00 0.00 C ATOM 571 C SER 38 2.935 44.342 1.641 1.00 0.00 C ATOM 572 O SER 38 2.720 43.159 1.374 1.00 0.00 O ATOM 573 CB SER 38 4.424 45.150 3.467 1.00 0.00 C ATOM 574 OG SER 38 5.276 44.073 3.202 1.00 0.00 O ATOM 580 N SER 39 3.153 45.268 0.699 1.00 0.00 N ATOM 581 CA SER 39 3.123 44.928 -0.728 1.00 0.00 C ATOM 582 C SER 39 4.216 43.927 -1.078 1.00 0.00 C ATOM 583 O SER 39 4.031 43.069 -1.941 1.00 0.00 O ATOM 584 CB SER 39 3.318 46.178 -1.560 1.00 0.00 C ATOM 585 OG SER 39 4.607 46.698 -1.382 1.00 0.00 O ATOM 591 N PHE 40 5.324 44.028 -0.348 1.00 0.00 N ATOM 592 CA PHE 40 6.460 43.121 -0.386 1.00 0.00 C ATOM 593 C PHE 40 7.569 43.715 0.482 1.00 0.00 C ATOM 594 O PHE 40 7.928 43.136 1.508 1.00 0.00 O ATOM 595 CB PHE 40 6.958 42.790 -1.842 1.00 0.00 C ATOM 596 CG PHE 40 7.498 43.894 -2.736 1.00 0.00 C ATOM 597 CD1 PHE 40 8.861 44.167 -2.795 1.00 0.00 C ATOM 598 CD2 PHE 40 6.653 44.648 -3.537 1.00 0.00 C ATOM 599 CE1 PHE 40 9.359 45.157 -3.617 1.00 0.00 C ATOM 600 CE2 PHE 40 7.146 45.640 -4.361 1.00 0.00 C ATOM 601 CZ PHE 40 8.500 45.895 -4.402 1.00 0.00 C ATOM 611 N ILE 41 8.067 44.890 0.071 1.00 0.00 N ATOM 612 CA ILE 41 9.132 45.647 0.723 1.00 0.00 C ATOM 613 C ILE 41 10.458 44.856 0.664 1.00 0.00 C ATOM 614 O ILE 41 10.458 43.629 0.585 1.00 0.00 O ATOM 615 CB ILE 41 8.709 46.030 2.168 1.00 0.00 C ATOM 616 CG1 ILE 41 7.410 46.845 2.110 1.00 0.00 C ATOM 617 CG2 ILE 41 9.786 46.845 2.877 1.00 0.00 C ATOM 618 CD1 ILE 41 7.547 48.134 1.335 1.00 0.00 C ATOM 630 N GLY 42 11.594 45.542 0.709 1.00 0.00 N ATOM 631 CA GLY 42 12.873 44.830 0.700 1.00 0.00 C ATOM 632 C GLY 42 13.174 44.199 -0.664 1.00 0.00 C ATOM 633 O GLY 42 13.892 44.776 -1.487 1.00 0.00 O ATOM 637 N ARG 43 12.639 42.996 -0.876 1.00 0.00 N ATOM 638 CA ARG 43 12.804 42.240 -2.115 1.00 0.00 C ATOM 639 C ARG 43 11.474 41.631 -2.524 1.00 0.00 C ATOM 640 O ARG 43 10.711 41.177 -1.675 1.00 0.00 O ATOM 641 CB ARG 43 13.839 41.131 -1.964 1.00 0.00 C ATOM 642 CG ARG 43 15.259 41.600 -1.684 1.00 0.00 C ATOM 643 CD ARG 43 15.850 42.270 -2.870 1.00 0.00 C ATOM 644 NE ARG 43 17.237 42.647 -2.657 1.00 0.00 N ATOM 645 CZ ARG 43 17.641 43.808 -2.102 1.00 0.00 C ATOM 646 NH1 ARG 43 16.761 44.702 -1.705 1.00 0.00 N ATOM 647 NH2 ARG 43 18.934 44.050 -1.958 1.00 0.00 N ATOM 661 N SER 44 11.201 41.597 -3.827 1.00 0.00 N ATOM 662 CA SER 44 9.914 41.117 -4.338 1.00 0.00 C ATOM 663 C SER 44 9.649 39.640 -4.081 1.00 0.00 C ATOM 664 O SER 44 8.498 39.217 -4.039 1.00 0.00 O ATOM 665 CB SER 44 9.827 41.386 -5.824 1.00 0.00 C ATOM 666 OG SER 44 10.744 40.595 -6.529 1.00 0.00 O ATOM 672 N LYS 45 10.706 38.860 -3.879 1.00 0.00 N ATOM 673 CA LYS 45 10.581 37.438 -3.577 1.00 0.00 C ATOM 674 C LYS 45 9.999 37.155 -2.179 1.00 0.00 C ATOM 675 O LYS 45 9.585 36.028 -1.893 1.00 0.00 O ATOM 676 CB LYS 45 11.944 36.777 -3.743 1.00 0.00 C ATOM 677 CG LYS 45 12.997 37.216 -2.744 1.00 0.00 C ATOM 678 CD LYS 45 14.339 36.561 -3.030 1.00 0.00 C ATOM 679 CE LYS 45 15.392 36.981 -2.015 1.00 0.00 C ATOM 680 NZ LYS 45 16.715 36.355 -2.301 1.00 0.00 N TER END