####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS488_3-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS488_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 18 - 40 4.89 11.71 LCS_AVERAGE: 47.73 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 20 - 35 1.86 17.15 LCS_AVERAGE: 27.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 20 - 30 0.87 16.53 LCS_AVERAGE: 18.39 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 4 8 18 3 3 5 6 8 9 10 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT V 3 V 3 4 8 18 3 3 5 5 8 9 10 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT Q 4 Q 4 4 8 20 3 3 5 6 8 9 10 10 11 15 15 21 25 28 31 33 35 37 39 40 LCS_GDT G 5 G 5 4 8 20 0 3 6 6 8 9 10 11 12 15 15 16 18 23 30 32 34 37 39 40 LCS_GDT P 6 P 6 4 8 20 4 5 6 6 8 9 10 12 13 15 15 16 17 21 26 28 29 35 38 40 LCS_GDT W 7 W 7 4 8 20 4 5 6 6 8 9 10 12 13 15 15 16 18 21 30 33 35 37 39 40 LCS_GDT V 8 V 8 4 10 20 4 5 6 7 10 10 10 12 13 15 15 16 18 23 30 33 35 37 39 40 LCS_GDT G 9 G 9 9 10 20 7 8 9 9 10 10 10 11 13 15 15 19 23 27 30 33 35 37 39 40 LCS_GDT S 10 S 10 9 10 20 7 8 9 9 10 10 10 12 14 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT S 11 S 11 9 10 20 7 8 9 9 10 10 10 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT Y 12 Y 12 9 10 20 7 8 9 9 10 10 10 12 14 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT V 13 V 13 9 10 20 7 8 9 9 10 10 10 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT A 14 A 14 9 10 20 7 8 9 9 10 10 10 12 13 15 18 21 23 28 31 33 35 37 39 40 LCS_GDT E 15 E 15 9 10 20 7 8 9 9 10 10 10 12 13 15 18 21 25 28 31 33 35 37 39 40 LCS_GDT T 16 T 16 9 10 22 4 8 9 9 10 10 10 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT G 17 G 17 9 10 22 4 7 9 9 10 10 10 11 13 15 18 18 21 26 28 33 35 37 39 40 LCS_GDT Q 18 Q 18 4 4 23 3 3 4 5 6 7 9 12 13 15 19 21 25 28 31 33 35 37 39 40 LCS_GDT N 19 N 19 4 12 23 3 3 4 5 6 7 14 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT W 20 W 20 11 16 23 6 9 11 12 13 16 16 18 19 19 19 20 21 24 27 32 35 36 39 40 LCS_GDT A 21 A 21 11 16 23 6 9 11 11 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT S 22 S 22 11 16 23 6 9 11 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT L 23 L 23 11 16 23 6 9 11 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT A 24 A 24 11 16 23 6 9 11 12 13 16 16 18 19 19 19 20 23 27 31 33 35 37 39 40 LCS_GDT A 25 A 25 11 16 23 6 9 11 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT N 26 N 26 11 16 23 5 9 11 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT E 27 E 27 11 16 23 5 9 11 12 13 16 16 18 19 19 19 20 22 25 31 33 35 37 39 40 LCS_GDT L 28 L 28 11 16 23 5 9 11 12 13 16 16 18 19 19 19 20 21 23 24 27 33 36 39 40 LCS_GDT R 29 R 29 11 16 23 5 8 11 12 13 16 16 18 19 19 19 20 21 23 27 32 34 37 39 40 LCS_GDT V 30 V 30 11 16 23 5 7 11 12 13 16 16 18 19 19 19 20 23 27 31 33 35 37 39 40 LCS_GDT T 31 T 31 9 16 23 3 7 10 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT E 32 E 32 8 16 23 3 4 10 11 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT R 33 R 33 5 16 23 3 5 7 7 11 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT P 34 P 34 5 16 23 3 7 10 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT F 35 F 35 5 16 23 3 5 7 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT W 36 W 36 5 11 23 3 5 7 7 9 15 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT I 37 I 37 9 11 23 3 9 9 10 10 15 16 18 19 19 19 21 25 28 31 33 35 37 39 40 LCS_GDT S 38 S 38 9 11 23 3 9 9 10 10 10 11 12 15 18 19 21 25 28 31 33 35 37 39 40 LCS_GDT S 39 S 39 9 11 23 5 9 9 10 10 10 11 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT F 40 F 40 9 11 23 5 9 9 10 10 10 11 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT I 41 I 41 9 11 15 5 9 9 10 10 10 11 12 15 16 19 21 25 28 31 33 35 37 39 40 LCS_GDT G 42 G 42 9 11 15 5 9 9 10 10 10 11 12 12 15 18 18 21 24 27 30 31 34 36 38 LCS_GDT R 43 R 43 9 11 15 5 9 9 10 10 10 11 12 12 15 18 18 20 22 27 29 31 33 35 38 LCS_GDT S 44 S 44 9 11 15 3 9 9 10 10 10 11 12 12 13 14 16 16 18 20 21 23 28 30 31 LCS_GDT K 45 K 45 9 11 15 3 9 9 10 10 10 11 12 12 13 14 16 16 18 19 19 21 23 24 28 LCS_AVERAGE LCS_A: 31.16 ( 18.39 27.38 47.73 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 9 11 12 13 16 16 18 19 19 19 21 25 28 31 33 35 37 39 40 GDT PERCENT_AT 15.91 20.45 25.00 27.27 29.55 36.36 36.36 40.91 43.18 43.18 43.18 47.73 56.82 63.64 70.45 75.00 79.55 84.09 88.64 90.91 GDT RMS_LOCAL 0.30 0.49 0.87 1.27 1.37 1.86 1.86 2.42 2.70 2.70 2.70 4.31 5.11 5.40 5.76 5.92 6.16 6.42 6.64 6.78 GDT RMS_ALL_AT 20.52 17.15 16.53 17.51 16.61 17.15 17.15 15.60 14.99 14.99 14.99 9.09 8.65 8.58 8.56 8.52 8.48 8.61 8.62 8.69 # Checking swapping # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 22.373 0 0.108 0.148 23.456 0.000 0.000 - LGA V 3 V 3 19.192 0 0.026 0.098 22.053 0.000 0.000 17.661 LGA Q 4 Q 4 19.789 0 0.693 0.553 20.783 0.000 0.000 18.685 LGA G 5 G 5 19.551 0 0.095 0.095 22.410 0.000 0.000 - LGA P 6 P 6 21.315 0 0.634 0.553 21.681 0.000 0.000 20.925 LGA W 7 W 7 21.751 0 0.279 1.312 25.279 0.000 0.000 20.235 LGA V 8 V 8 19.350 0 0.617 0.585 19.718 0.000 0.000 17.012 LGA G 9 G 9 18.463 0 0.492 0.492 18.638 0.000 0.000 - LGA S 10 S 10 20.523 0 0.038 0.142 23.722 0.000 0.000 23.722 LGA S 11 S 11 23.233 0 0.058 0.600 26.564 0.000 0.000 26.564 LGA Y 12 Y 12 19.469 0 0.024 1.283 20.465 0.000 0.000 18.472 LGA V 13 V 13 16.511 0 0.020 0.068 17.397 0.000 0.000 16.589 LGA A 14 A 14 20.337 0 0.019 0.019 22.536 0.000 0.000 - LGA E 15 E 15 20.137 0 0.114 1.424 27.503 0.000 0.000 27.503 LGA T 16 T 16 14.982 0 0.153 0.172 16.551 0.000 0.000 13.676 LGA G 17 G 17 14.993 0 0.250 0.250 14.993 0.000 0.000 - LGA Q 18 Q 18 11.403 0 0.627 1.058 17.303 0.000 0.000 13.908 LGA N 19 N 19 6.397 0 0.058 0.964 9.407 2.727 1.364 9.407 LGA W 20 W 20 3.044 0 0.617 1.124 8.710 20.909 5.974 8.710 LGA A 21 A 21 2.632 0 0.073 0.072 3.303 41.818 37.091 - LGA S 22 S 22 1.502 0 0.062 0.121 1.933 58.182 55.758 1.572 LGA L 23 L 23 2.168 0 0.104 1.417 8.081 51.364 27.955 5.335 LGA A 24 A 24 1.830 0 0.025 0.027 2.669 58.182 52.000 - LGA A 25 A 25 1.802 0 0.038 0.041 2.289 51.364 48.727 - LGA N 26 N 26 2.012 0 0.011 0.092 3.078 48.182 37.955 3.078 LGA E 27 E 27 0.932 0 0.047 0.151 2.700 73.636 62.020 2.700 LGA L 28 L 28 1.387 0 0.078 0.105 2.146 55.000 54.773 1.655 LGA R 29 R 29 1.813 0 0.116 1.561 8.743 50.909 27.934 8.743 LGA V 30 V 30 1.724 0 0.102 0.138 2.104 58.182 53.247 1.662 LGA T 31 T 31 0.610 0 0.688 0.605 2.318 70.909 66.494 1.233 LGA E 32 E 32 2.587 0 0.325 1.319 10.449 41.364 18.384 10.449 LGA R 33 R 33 3.743 0 0.222 0.824 11.127 16.818 6.116 11.127 LGA P 34 P 34 2.176 0 0.253 0.282 3.308 30.455 29.351 2.860 LGA F 35 F 35 2.203 0 0.059 1.319 6.018 48.182 28.099 6.018 LGA W 36 W 36 3.661 0 0.671 0.921 7.224 10.000 15.844 3.007 LGA I 37 I 37 4.304 0 0.023 0.339 8.668 5.909 17.045 1.129 LGA S 38 S 38 10.904 0 0.043 0.074 14.525 0.000 0.000 11.161 LGA S 39 S 39 12.207 0 0.000 0.655 15.667 0.000 0.000 9.621 LGA F 40 F 40 14.874 0 0.086 1.048 19.476 0.000 0.000 16.372 LGA I 41 I 41 19.666 0 0.058 0.107 22.382 0.000 0.000 17.509 LGA G 42 G 42 26.577 0 0.073 0.073 29.137 0.000 0.000 - LGA R 43 R 43 25.584 0 0.307 1.363 26.905 0.000 0.000 21.338 LGA S 44 S 44 30.985 0 0.027 0.676 34.492 0.000 0.000 34.492 LGA K 45 K 45 32.693 0 0.094 0.672 35.660 0.000 0.000 30.650 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 8.200 8.141 9.430 18.048 14.685 10.701 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 18 2.42 40.909 36.449 0.714 LGA_LOCAL RMSD: 2.420 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.600 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 8.200 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.324908 * X + 0.504284 * Y + -0.800083 * Z + 55.615906 Y_new = -0.935242 * X + 0.045589 * Y + -0.351061 * Z + 98.092308 Z_new = -0.140559 * X + 0.862334 * Y + 0.486440 * Z + -34.591347 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.236435 0.141026 1.057195 [DEG: -70.8425 8.0802 60.5728 ] ZXZ: -1.157312 1.062786 -0.161578 [DEG: -66.3091 60.8932 -9.2577 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS488_3-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS488_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 18 2.42 36.449 8.20 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS488_3-D1 PFRMAT TS TARGET T0953s2 MODEL 3 PARENT 3ovg_A 1ij5_A ATOM 20 N ALA 2 -4.446 37.678 -1.530 1.00 0.00 N ATOM 21 CA ALA 2 -4.879 37.078 -2.783 1.00 0.00 C ATOM 22 C ALA 2 -4.205 35.736 -3.006 1.00 0.00 C ATOM 23 O ALA 2 -2.983 35.609 -2.901 1.00 0.00 O ATOM 24 CB ALA 2 -4.575 38.007 -3.952 1.00 0.00 C ATOM 30 N VAL 3 -5.018 34.745 -3.340 1.00 0.00 N ATOM 31 CA VAL 3 -4.544 33.397 -3.599 1.00 0.00 C ATOM 32 C VAL 3 -4.339 33.177 -5.094 1.00 0.00 C ATOM 33 O VAL 3 -5.230 33.436 -5.901 1.00 0.00 O ATOM 34 CB VAL 3 -5.537 32.379 -3.006 1.00 0.00 C ATOM 35 CG1 VAL 3 -5.129 30.966 -3.348 1.00 0.00 C ATOM 36 CG2 VAL 3 -5.572 32.542 -1.492 1.00 0.00 C ATOM 46 N GLN 4 -3.140 32.717 -5.447 1.00 0.00 N ATOM 47 CA GLN 4 -2.728 32.497 -6.835 1.00 0.00 C ATOM 48 C GLN 4 -3.160 31.137 -7.401 1.00 0.00 C ATOM 49 O GLN 4 -3.014 30.884 -8.600 1.00 0.00 O ATOM 50 CB GLN 4 -1.205 32.621 -6.919 1.00 0.00 C ATOM 51 CG GLN 4 -0.674 34.011 -6.609 1.00 0.00 C ATOM 52 CD GLN 4 0.844 34.048 -6.537 1.00 0.00 C ATOM 53 OE1 GLN 4 1.475 33.082 -6.096 1.00 0.00 O ATOM 54 NE2 GLN 4 1.435 35.158 -6.960 1.00 0.00 N ATOM 63 N GLY 5 -3.677 30.269 -6.537 1.00 0.00 N ATOM 64 CA GLY 5 -4.108 28.935 -6.925 1.00 0.00 C ATOM 65 C GLY 5 -5.336 28.943 -7.857 1.00 0.00 C ATOM 66 O GLY 5 -6.191 29.831 -7.766 1.00 0.00 O ATOM 70 N PRO 6 -5.439 27.933 -8.737 1.00 0.00 N ATOM 71 CA PRO 6 -6.476 27.683 -9.731 1.00 0.00 C ATOM 72 C PRO 6 -7.889 27.700 -9.172 1.00 0.00 C ATOM 73 O PRO 6 -8.193 26.993 -8.209 1.00 0.00 O ATOM 74 CB PRO 6 -6.116 26.292 -10.255 1.00 0.00 C ATOM 75 CG PRO 6 -4.643 26.218 -10.125 1.00 0.00 C ATOM 76 CD PRO 6 -4.343 26.940 -8.849 1.00 0.00 C ATOM 84 N TRP 7 -8.757 28.495 -9.808 1.00 0.00 N ATOM 85 CA TRP 7 -10.188 28.576 -9.477 1.00 0.00 C ATOM 86 C TRP 7 -10.554 29.144 -8.095 1.00 0.00 C ATOM 87 O TRP 7 -11.719 29.071 -7.702 1.00 0.00 O ATOM 88 CB TRP 7 -10.855 27.197 -9.610 1.00 0.00 C ATOM 89 CG TRP 7 -10.826 26.616 -10.995 1.00 0.00 C ATOM 90 CD1 TRP 7 -11.593 27.016 -12.049 1.00 0.00 C ATOM 91 CD2 TRP 7 -10.005 25.529 -11.488 1.00 0.00 C ATOM 92 NE1 TRP 7 -11.309 26.257 -13.155 1.00 0.00 N ATOM 93 CE2 TRP 7 -10.342 25.342 -12.828 1.00 0.00 C ATOM 94 CE3 TRP 7 -9.033 24.714 -10.907 1.00 0.00 C ATOM 95 CZ2 TRP 7 -9.741 24.362 -13.606 1.00 0.00 C ATOM 96 CZ3 TRP 7 -8.426 23.736 -11.686 1.00 0.00 C ATOM 97 CH2 TRP 7 -8.772 23.565 -12.999 1.00 0.00 C ATOM 108 N VAL 8 -9.594 29.683 -7.343 1.00 0.00 N ATOM 109 CA VAL 8 -9.918 30.165 -6.002 1.00 0.00 C ATOM 110 C VAL 8 -10.698 31.490 -5.996 1.00 0.00 C ATOM 111 O VAL 8 -10.222 32.510 -6.497 1.00 0.00 O ATOM 112 CB VAL 8 -8.621 30.314 -5.193 1.00 0.00 C ATOM 113 CG1 VAL 8 -8.909 30.887 -3.823 1.00 0.00 C ATOM 114 CG2 VAL 8 -7.971 28.947 -5.073 1.00 0.00 C ATOM 124 N GLY 9 -11.903 31.455 -5.412 1.00 0.00 N ATOM 125 CA GLY 9 -12.763 32.634 -5.294 1.00 0.00 C ATOM 126 C GLY 9 -12.506 33.360 -3.977 1.00 0.00 C ATOM 127 O GLY 9 -11.708 32.896 -3.168 1.00 0.00 O ATOM 131 N SER 10 -13.200 34.480 -3.748 1.00 0.00 N ATOM 132 CA SER 10 -12.972 35.293 -2.547 1.00 0.00 C ATOM 133 C SER 10 -13.367 34.612 -1.238 1.00 0.00 C ATOM 134 O SER 10 -12.761 34.879 -0.198 1.00 0.00 O ATOM 135 CB SER 10 -13.738 36.596 -2.661 1.00 0.00 C ATOM 136 OG SER 10 -15.121 36.366 -2.638 1.00 0.00 O ATOM 142 N SER 11 -14.348 33.711 -1.286 1.00 0.00 N ATOM 143 CA SER 11 -14.741 33.000 -0.075 1.00 0.00 C ATOM 144 C SER 11 -13.723 31.920 0.226 1.00 0.00 C ATOM 145 O SER 11 -13.461 31.603 1.387 1.00 0.00 O ATOM 146 CB SER 11 -16.119 32.388 -0.238 1.00 0.00 C ATOM 147 OG SER 11 -16.111 31.372 -1.202 1.00 0.00 O ATOM 153 N TYR 12 -13.110 31.404 -0.830 1.00 0.00 N ATOM 154 CA TYR 12 -12.067 30.414 -0.702 1.00 0.00 C ATOM 155 C TYR 12 -10.795 31.058 -0.175 1.00 0.00 C ATOM 156 O TYR 12 -10.059 30.448 0.601 1.00 0.00 O ATOM 157 CB TYR 12 -11.829 29.734 -2.033 1.00 0.00 C ATOM 158 CG TYR 12 -12.889 28.731 -2.418 1.00 0.00 C ATOM 159 CD1 TYR 12 -13.737 28.207 -1.450 1.00 0.00 C ATOM 160 CD2 TYR 12 -12.989 28.304 -3.733 1.00 0.00 C ATOM 161 CE1 TYR 12 -14.683 27.261 -1.802 1.00 0.00 C ATOM 162 CE2 TYR 12 -13.935 27.364 -4.083 1.00 0.00 C ATOM 163 CZ TYR 12 -14.780 26.842 -3.126 1.00 0.00 C ATOM 164 OH TYR 12 -15.716 25.901 -3.486 1.00 0.00 O ATOM 174 N VAL 13 -10.566 32.317 -0.565 1.00 0.00 N ATOM 175 CA VAL 13 -9.443 33.077 -0.038 1.00 0.00 C ATOM 176 C VAL 13 -9.621 33.265 1.459 1.00 0.00 C ATOM 177 O VAL 13 -8.683 33.038 2.221 1.00 0.00 O ATOM 178 CB VAL 13 -9.318 34.466 -0.704 1.00 0.00 C ATOM 179 CG1 VAL 13 -8.275 35.281 0.036 1.00 0.00 C ATOM 180 CG2 VAL 13 -8.909 34.333 -2.161 1.00 0.00 C ATOM 190 N ALA 14 -10.840 33.645 1.865 1.00 0.00 N ATOM 191 CA ALA 14 -11.191 33.875 3.267 1.00 0.00 C ATOM 192 C ALA 14 -10.955 32.652 4.133 1.00 0.00 C ATOM 193 O ALA 14 -10.478 32.773 5.262 1.00 0.00 O ATOM 194 CB ALA 14 -12.646 34.304 3.373 1.00 0.00 C ATOM 200 N GLU 15 -11.202 31.459 3.584 1.00 0.00 N ATOM 201 CA GLU 15 -10.973 30.225 4.334 1.00 0.00 C ATOM 202 C GLU 15 -9.504 30.012 4.730 1.00 0.00 C ATOM 203 O GLU 15 -9.217 29.195 5.607 1.00 0.00 O ATOM 204 CB GLU 15 -11.459 29.002 3.551 1.00 0.00 C ATOM 205 CG GLU 15 -12.971 28.896 3.412 1.00 0.00 C ATOM 206 CD GLU 15 -13.410 27.638 2.721 1.00 0.00 C ATOM 207 OE1 GLU 15 -12.612 26.736 2.616 1.00 0.00 O ATOM 208 OE2 GLU 15 -14.539 27.575 2.294 1.00 0.00 O ATOM 215 N THR 16 -8.572 30.729 4.095 1.00 0.00 N ATOM 216 CA THR 16 -7.170 30.607 4.447 1.00 0.00 C ATOM 217 C THR 16 -6.661 31.879 5.102 1.00 0.00 C ATOM 218 O THR 16 -5.955 31.820 6.107 1.00 0.00 O ATOM 219 CB THR 16 -6.311 30.351 3.208 1.00 0.00 C ATOM 220 OG1 THR 16 -6.442 31.459 2.307 1.00 0.00 O ATOM 221 CG2 THR 16 -6.742 29.086 2.507 1.00 0.00 C ATOM 229 N GLY 17 -7.045 33.025 4.538 1.00 0.00 N ATOM 230 CA GLY 17 -6.602 34.336 4.999 1.00 0.00 C ATOM 231 C GLY 17 -7.017 34.645 6.424 1.00 0.00 C ATOM 232 O GLY 17 -6.206 35.134 7.214 1.00 0.00 O ATOM 236 N GLN 18 -8.277 34.365 6.755 1.00 0.00 N ATOM 237 CA GLN 18 -8.783 34.628 8.092 1.00 0.00 C ATOM 238 C GLN 18 -8.110 33.715 9.103 1.00 0.00 C ATOM 239 O GLN 18 -7.810 34.130 10.225 1.00 0.00 O ATOM 240 CB GLN 18 -10.299 34.447 8.135 1.00 0.00 C ATOM 241 CG GLN 18 -11.069 35.500 7.354 1.00 0.00 C ATOM 242 CD GLN 18 -12.564 35.246 7.361 1.00 0.00 C ATOM 243 OE1 GLN 18 -13.018 34.118 7.571 1.00 0.00 O ATOM 244 NE2 GLN 18 -13.341 36.299 7.135 1.00 0.00 N ATOM 253 N ASN 19 -7.864 32.471 8.694 1.00 0.00 N ATOM 254 CA ASN 19 -7.204 31.510 9.557 1.00 0.00 C ATOM 255 C ASN 19 -5.761 31.912 9.815 1.00 0.00 C ATOM 256 O ASN 19 -5.291 31.808 10.947 1.00 0.00 O ATOM 257 CB ASN 19 -7.280 30.120 8.963 1.00 0.00 C ATOM 258 CG ASN 19 -8.660 29.534 9.075 1.00 0.00 C ATOM 259 OD1 ASN 19 -9.485 30.005 9.866 1.00 0.00 O ATOM 260 ND2 ASN 19 -8.925 28.511 8.307 1.00 0.00 N ATOM 267 N TRP 20 -5.078 32.405 8.779 1.00 0.00 N ATOM 268 CA TRP 20 -3.696 32.850 8.913 1.00 0.00 C ATOM 269 C TRP 20 -3.603 34.054 9.829 1.00 0.00 C ATOM 270 O TRP 20 -2.670 34.162 10.629 1.00 0.00 O ATOM 271 CB TRP 20 -3.123 33.227 7.555 1.00 0.00 C ATOM 272 CG TRP 20 -2.927 32.067 6.638 1.00 0.00 C ATOM 273 CD1 TRP 20 -2.791 30.759 6.993 1.00 0.00 C ATOM 274 CD2 TRP 20 -2.863 32.107 5.193 1.00 0.00 C ATOM 275 NE1 TRP 20 -2.648 29.983 5.871 1.00 0.00 N ATOM 276 CE2 TRP 20 -2.692 30.786 4.759 1.00 0.00 C ATOM 277 CE3 TRP 20 -2.944 33.134 4.244 1.00 0.00 C ATOM 278 CZ2 TRP 20 -2.603 30.469 3.417 1.00 0.00 C ATOM 279 CZ3 TRP 20 -2.852 32.812 2.897 1.00 0.00 C ATOM 280 CH2 TRP 20 -2.687 31.511 2.495 1.00 0.00 C ATOM 291 N ALA 21 -4.584 34.949 9.725 1.00 0.00 N ATOM 292 CA ALA 21 -4.627 36.130 10.566 1.00 0.00 C ATOM 293 C ALA 21 -4.752 35.745 12.030 1.00 0.00 C ATOM 294 O ALA 21 -4.023 36.271 12.873 1.00 0.00 O ATOM 295 CB ALA 21 -5.791 37.021 10.162 1.00 0.00 C ATOM 301 N SER 22 -5.666 34.814 12.331 1.00 0.00 N ATOM 302 CA SER 22 -5.871 34.390 13.709 1.00 0.00 C ATOM 303 C SER 22 -4.735 33.510 14.207 1.00 0.00 C ATOM 304 O SER 22 -4.436 33.509 15.399 1.00 0.00 O ATOM 305 CB SER 22 -7.177 33.637 13.841 1.00 0.00 C ATOM 306 OG SER 22 -7.112 32.400 13.188 1.00 0.00 O ATOM 312 N LEU 23 -4.080 32.795 13.293 1.00 0.00 N ATOM 313 CA LEU 23 -2.937 31.960 13.640 1.00 0.00 C ATOM 314 C LEU 23 -1.808 32.808 14.172 1.00 0.00 C ATOM 315 O LEU 23 -1.295 32.565 15.268 1.00 0.00 O ATOM 316 CB LEU 23 -2.453 31.184 12.411 1.00 0.00 C ATOM 317 CG LEU 23 -1.194 30.337 12.610 1.00 0.00 C ATOM 318 CD1 LEU 23 -1.458 29.275 13.667 1.00 0.00 C ATOM 319 CD2 LEU 23 -0.807 29.710 11.279 1.00 0.00 C ATOM 331 N ALA 24 -1.434 33.813 13.389 1.00 0.00 N ATOM 332 CA ALA 24 -0.375 34.720 13.770 1.00 0.00 C ATOM 333 C ALA 24 -0.760 35.490 15.014 1.00 0.00 C ATOM 334 O ALA 24 0.060 35.653 15.912 1.00 0.00 O ATOM 335 CB ALA 24 -0.069 35.675 12.634 1.00 0.00 C ATOM 341 N ALA 25 -2.014 35.943 15.084 1.00 0.00 N ATOM 342 CA ALA 25 -2.487 36.708 16.227 1.00 0.00 C ATOM 343 C ALA 25 -2.427 35.913 17.522 1.00 0.00 C ATOM 344 O ALA 25 -2.074 36.462 18.564 1.00 0.00 O ATOM 345 CB ALA 25 -3.908 37.177 15.982 1.00 0.00 C ATOM 351 N ASN 26 -2.772 34.628 17.469 1.00 0.00 N ATOM 352 CA ASN 26 -2.730 33.800 18.667 1.00 0.00 C ATOM 353 C ASN 26 -1.302 33.535 19.128 1.00 0.00 C ATOM 354 O ASN 26 -1.027 33.535 20.330 1.00 0.00 O ATOM 355 CB ASN 26 -3.460 32.494 18.433 1.00 0.00 C ATOM 356 CG ASN 26 -4.954 32.668 18.409 1.00 0.00 C ATOM 357 OD1 ASN 26 -5.487 33.650 18.940 1.00 0.00 O ATOM 358 ND2 ASN 26 -5.642 31.733 17.805 1.00 0.00 N ATOM 365 N GLU 27 -0.391 33.333 18.178 1.00 0.00 N ATOM 366 CA GLU 27 1.004 33.079 18.514 1.00 0.00 C ATOM 367 C GLU 27 1.731 34.338 18.973 1.00 0.00 C ATOM 368 O GLU 27 2.593 34.285 19.851 1.00 0.00 O ATOM 369 CB GLU 27 1.732 32.490 17.302 1.00 0.00 C ATOM 370 CG GLU 27 1.276 31.093 16.913 1.00 0.00 C ATOM 371 CD GLU 27 1.524 30.077 17.996 1.00 0.00 C ATOM 372 OE1 GLU 27 2.569 30.122 18.598 1.00 0.00 O ATOM 373 OE2 GLU 27 0.668 29.254 18.218 1.00 0.00 O ATOM 380 N LEU 28 1.377 35.462 18.370 1.00 0.00 N ATOM 381 CA LEU 28 2.015 36.739 18.640 1.00 0.00 C ATOM 382 C LEU 28 1.271 37.645 19.621 1.00 0.00 C ATOM 383 O LEU 28 1.806 38.682 20.008 1.00 0.00 O ATOM 384 CB LEU 28 2.187 37.445 17.304 1.00 0.00 C ATOM 385 CG LEU 28 3.080 36.696 16.318 1.00 0.00 C ATOM 386 CD1 LEU 28 3.037 37.382 14.971 1.00 0.00 C ATOM 387 CD2 LEU 28 4.488 36.681 16.881 1.00 0.00 C ATOM 399 N ARG 29 0.054 37.255 20.024 1.00 0.00 N ATOM 400 CA ARG 29 -0.773 38.049 20.945 1.00 0.00 C ATOM 401 C ARG 29 -1.110 39.414 20.341 1.00 0.00 C ATOM 402 O ARG 29 -0.874 40.460 20.949 1.00 0.00 O ATOM 403 CB ARG 29 -0.076 38.230 22.288 1.00 0.00 C ATOM 404 CG ARG 29 0.225 36.934 23.022 1.00 0.00 C ATOM 405 CD ARG 29 0.841 37.183 24.349 1.00 0.00 C ATOM 406 NE ARG 29 1.151 35.941 25.037 1.00 0.00 N ATOM 407 CZ ARG 29 1.782 35.858 26.224 1.00 0.00 C ATOM 408 NH1 ARG 29 2.164 36.951 26.847 1.00 0.00 N ATOM 409 NH2 ARG 29 2.017 34.674 26.762 1.00 0.00 N ATOM 423 N VAL 30 -1.666 39.378 19.133 1.00 0.00 N ATOM 424 CA VAL 30 -2.004 40.577 18.366 1.00 0.00 C ATOM 425 C VAL 30 -3.510 40.814 18.306 1.00 0.00 C ATOM 426 O VAL 30 -4.293 39.881 18.133 1.00 0.00 O ATOM 427 CB VAL 30 -1.418 40.467 16.943 1.00 0.00 C ATOM 428 CG1 VAL 30 -1.793 41.666 16.092 1.00 0.00 C ATOM 429 CG2 VAL 30 0.085 40.354 17.057 1.00 0.00 C ATOM 439 N THR 31 -3.906 42.076 18.475 1.00 0.00 N ATOM 440 CA THR 31 -5.313 42.469 18.469 1.00 0.00 C ATOM 441 C THR 31 -5.846 42.659 17.047 1.00 0.00 C ATOM 442 O THR 31 -5.087 42.645 16.076 1.00 0.00 O ATOM 443 CB THR 31 -5.521 43.760 19.292 1.00 0.00 C ATOM 444 OG1 THR 31 -4.786 44.841 18.697 1.00 0.00 O ATOM 445 CG2 THR 31 -5.043 43.550 20.720 1.00 0.00 C ATOM 453 N GLU 32 -7.164 42.822 16.928 1.00 0.00 N ATOM 454 CA GLU 32 -7.840 42.923 15.631 1.00 0.00 C ATOM 455 C GLU 32 -7.608 44.252 14.919 1.00 0.00 C ATOM 456 O GLU 32 -8.499 45.102 14.854 1.00 0.00 O ATOM 457 CB GLU 32 -9.340 42.698 15.803 1.00 0.00 C ATOM 458 CG GLU 32 -9.716 41.308 16.295 1.00 0.00 C ATOM 459 CD GLU 32 -11.199 41.129 16.461 1.00 0.00 C ATOM 460 OE1 GLU 32 -11.917 42.084 16.287 1.00 0.00 O ATOM 461 OE2 GLU 32 -11.615 40.035 16.764 1.00 0.00 O ATOM 468 N ARG 33 -6.404 44.409 14.386 1.00 0.00 N ATOM 469 CA ARG 33 -5.993 45.594 13.655 1.00 0.00 C ATOM 470 C ARG 33 -5.923 45.248 12.173 1.00 0.00 C ATOM 471 O ARG 33 -4.842 44.972 11.670 1.00 0.00 O ATOM 472 CB ARG 33 -4.647 46.059 14.164 1.00 0.00 C ATOM 473 CG ARG 33 -4.646 46.264 15.663 1.00 0.00 C ATOM 474 CD ARG 33 -5.485 47.414 16.066 1.00 0.00 C ATOM 475 NE ARG 33 -5.530 47.565 17.511 1.00 0.00 N ATOM 476 CZ ARG 33 -6.094 48.606 18.152 1.00 0.00 C ATOM 477 NH1 ARG 33 -6.640 49.585 17.463 1.00 0.00 N ATOM 478 NH2 ARG 33 -6.101 48.645 19.473 1.00 0.00 N ATOM 492 N PRO 34 -7.058 45.331 11.466 1.00 0.00 N ATOM 493 CA PRO 34 -7.269 44.846 10.087 1.00 0.00 C ATOM 494 C PRO 34 -6.007 44.802 9.229 1.00 0.00 C ATOM 495 O PRO 34 -5.500 45.825 8.767 1.00 0.00 O ATOM 496 CB PRO 34 -8.241 45.872 9.489 1.00 0.00 C ATOM 497 CG PRO 34 -8.955 46.436 10.650 1.00 0.00 C ATOM 498 CD PRO 34 -7.893 46.528 11.703 1.00 0.00 C ATOM 506 N PHE 35 -5.550 43.570 8.992 1.00 0.00 N ATOM 507 CA PHE 35 -4.367 43.290 8.191 1.00 0.00 C ATOM 508 C PHE 35 -4.856 42.768 6.856 1.00 0.00 C ATOM 509 O PHE 35 -5.827 42.012 6.824 1.00 0.00 O ATOM 510 CB PHE 35 -3.522 42.206 8.872 1.00 0.00 C ATOM 511 CG PHE 35 -3.055 42.580 10.248 1.00 0.00 C ATOM 512 CD1 PHE 35 -3.748 42.105 11.357 1.00 0.00 C ATOM 513 CD2 PHE 35 -1.972 43.404 10.454 1.00 0.00 C ATOM 514 CE1 PHE 35 -3.366 42.457 12.638 1.00 0.00 C ATOM 515 CE2 PHE 35 -1.594 43.764 11.728 1.00 0.00 C ATOM 516 CZ PHE 35 -2.290 43.294 12.820 1.00 0.00 C ATOM 526 N TRP 36 -4.173 43.112 5.755 1.00 0.00 N ATOM 527 CA TRP 36 -4.643 42.675 4.435 1.00 0.00 C ATOM 528 C TRP 36 -4.572 41.177 4.184 1.00 0.00 C ATOM 529 O TRP 36 -5.202 40.690 3.244 1.00 0.00 O ATOM 530 CB TRP 36 -3.915 43.404 3.316 1.00 0.00 C ATOM 531 CG TRP 36 -4.398 44.803 3.122 1.00 0.00 C ATOM 532 CD1 TRP 36 -5.091 45.559 4.020 1.00 0.00 C ATOM 533 CD2 TRP 36 -4.250 45.626 1.936 1.00 0.00 C ATOM 534 NE1 TRP 36 -5.367 46.795 3.486 1.00 0.00 N ATOM 535 CE2 TRP 36 -4.859 46.850 2.212 1.00 0.00 C ATOM 536 CE3 TRP 36 -3.656 45.421 0.685 1.00 0.00 C ATOM 537 CZ2 TRP 36 -4.886 47.882 1.286 1.00 0.00 C ATOM 538 CZ3 TRP 36 -3.685 46.453 -0.243 1.00 0.00 C ATOM 539 CH2 TRP 36 -4.282 47.651 0.050 1.00 0.00 C ATOM 550 N ILE 37 -3.899 40.422 5.054 1.00 0.00 N ATOM 551 CA ILE 37 -3.915 38.972 4.935 1.00 0.00 C ATOM 552 C ILE 37 -5.352 38.432 5.046 1.00 0.00 C ATOM 553 O ILE 37 -5.666 37.388 4.465 1.00 0.00 O ATOM 554 CB ILE 37 -3.005 38.313 5.986 1.00 0.00 C ATOM 555 CG1 ILE 37 -2.738 36.857 5.606 1.00 0.00 C ATOM 556 CG2 ILE 37 -3.620 38.400 7.374 1.00 0.00 C ATOM 557 CD1 ILE 37 -1.620 36.229 6.396 1.00 0.00 C ATOM 569 N SER 38 -6.237 39.171 5.727 1.00 0.00 N ATOM 570 CA SER 38 -7.644 38.803 5.818 1.00 0.00 C ATOM 571 C SER 38 -8.564 39.967 5.417 1.00 0.00 C ATOM 572 O SER 38 -9.760 39.769 5.203 1.00 0.00 O ATOM 573 CB SER 38 -7.982 38.364 7.223 1.00 0.00 C ATOM 574 OG SER 38 -7.844 39.427 8.128 1.00 0.00 O ATOM 580 N SER 39 -8.011 41.185 5.310 1.00 0.00 N ATOM 581 CA SER 39 -8.814 42.353 4.944 1.00 0.00 C ATOM 582 C SER 39 -8.719 42.746 3.471 1.00 0.00 C ATOM 583 O SER 39 -9.502 43.580 3.013 1.00 0.00 O ATOM 584 CB SER 39 -8.418 43.544 5.794 1.00 0.00 C ATOM 585 OG SER 39 -8.700 43.313 7.147 1.00 0.00 O ATOM 591 N PHE 40 -7.788 42.154 2.721 1.00 0.00 N ATOM 592 CA PHE 40 -7.691 42.435 1.295 1.00 0.00 C ATOM 593 C PHE 40 -8.946 41.974 0.576 1.00 0.00 C ATOM 594 O PHE 40 -9.485 42.702 -0.248 1.00 0.00 O ATOM 595 CB PHE 40 -6.474 41.762 0.669 1.00 0.00 C ATOM 596 CG PHE 40 -6.360 42.015 -0.803 1.00 0.00 C ATOM 597 CD1 PHE 40 -5.959 43.255 -1.268 1.00 0.00 C ATOM 598 CD2 PHE 40 -6.643 41.020 -1.724 1.00 0.00 C ATOM 599 CE1 PHE 40 -5.846 43.502 -2.620 1.00 0.00 C ATOM 600 CE2 PHE 40 -6.530 41.264 -3.078 1.00 0.00 C ATOM 601 CZ PHE 40 -6.131 42.505 -3.528 1.00 0.00 C ATOM 611 N ILE 41 -9.357 40.743 0.872 1.00 0.00 N ATOM 612 CA ILE 41 -10.544 40.080 0.330 1.00 0.00 C ATOM 613 C ILE 41 -11.665 41.044 -0.059 1.00 0.00 C ATOM 614 O ILE 41 -12.229 41.734 0.796 1.00 0.00 O ATOM 615 CB ILE 41 -11.070 39.096 1.377 1.00 0.00 C ATOM 616 CG1 ILE 41 -9.988 38.069 1.671 1.00 0.00 C ATOM 617 CG2 ILE 41 -12.329 38.403 0.872 1.00 0.00 C ATOM 618 CD1 ILE 41 -10.276 37.229 2.880 1.00 0.00 C ATOM 630 N GLY 42 -12.017 41.053 -1.342 1.00 0.00 N ATOM 631 CA GLY 42 -13.076 41.932 -1.851 1.00 0.00 C ATOM 632 C GLY 42 -12.541 43.244 -2.453 1.00 0.00 C ATOM 633 O GLY 42 -13.248 43.929 -3.199 1.00 0.00 O ATOM 637 N ARG 43 -11.287 43.579 -2.158 1.00 0.00 N ATOM 638 CA ARG 43 -10.672 44.805 -2.652 1.00 0.00 C ATOM 639 C ARG 43 -10.194 44.661 -4.084 1.00 0.00 C ATOM 640 O ARG 43 -9.016 44.390 -4.333 1.00 0.00 O ATOM 641 CB ARG 43 -9.487 45.186 -1.783 1.00 0.00 C ATOM 642 CG ARG 43 -8.836 46.522 -2.072 1.00 0.00 C ATOM 643 CD ARG 43 -7.671 46.732 -1.180 1.00 0.00 C ATOM 644 NE ARG 43 -8.056 46.683 0.222 1.00 0.00 N ATOM 645 CZ ARG 43 -8.557 47.716 0.922 1.00 0.00 C ATOM 646 NH1 ARG 43 -8.733 48.884 0.342 1.00 0.00 N ATOM 647 NH2 ARG 43 -8.877 47.553 2.194 1.00 0.00 N ATOM 661 N SER 44 -11.113 44.867 -5.019 1.00 0.00 N ATOM 662 CA SER 44 -10.798 44.817 -6.441 1.00 0.00 C ATOM 663 C SER 44 -9.768 45.877 -6.788 1.00 0.00 C ATOM 664 O SER 44 -9.779 46.976 -6.229 1.00 0.00 O ATOM 665 CB SER 44 -12.034 45.010 -7.284 1.00 0.00 C ATOM 666 OG SER 44 -11.694 45.071 -8.642 1.00 0.00 O ATOM 672 N LYS 45 -8.871 45.546 -7.708 1.00 0.00 N ATOM 673 CA LYS 45 -7.796 46.468 -8.044 1.00 0.00 C ATOM 674 C LYS 45 -7.190 46.169 -9.403 1.00 0.00 C ATOM 675 O LYS 45 -7.552 45.189 -10.051 1.00 0.00 O ATOM 676 CB LYS 45 -6.681 46.404 -7.007 1.00 0.00 C ATOM 677 CG LYS 45 -5.888 45.114 -7.065 1.00 0.00 C ATOM 678 CD LYS 45 -4.762 45.109 -6.055 1.00 0.00 C ATOM 679 CE LYS 45 -3.791 46.245 -6.338 1.00 0.00 C ATOM 680 NZ LYS 45 -2.496 46.062 -5.634 1.00 0.00 N TER END