####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS457_5-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS457_5-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 16 - 43 4.81 7.22 LONGEST_CONTINUOUS_SEGMENT: 28 17 - 44 4.68 7.55 LONGEST_CONTINUOUS_SEGMENT: 28 18 - 45 4.47 8.07 LCS_AVERAGE: 61.47 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 19 - 33 1.92 8.26 LONGEST_CONTINUOUS_SEGMENT: 15 20 - 34 1.66 9.08 LONGEST_CONTINUOUS_SEGMENT: 15 21 - 35 2.00 8.76 LONGEST_CONTINUOUS_SEGMENT: 15 24 - 38 1.98 8.69 LONGEST_CONTINUOUS_SEGMENT: 15 25 - 39 1.97 8.68 LCS_AVERAGE: 24.33 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 0.90 8.85 LONGEST_CONTINUOUS_SEGMENT: 12 21 - 32 0.96 8.60 LONGEST_CONTINUOUS_SEGMENT: 12 22 - 33 0.99 8.83 LCS_AVERAGE: 16.68 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 25 3 3 4 4 4 7 8 10 12 17 20 25 28 32 35 36 38 39 40 41 LCS_GDT V 3 V 3 3 5 25 3 3 4 4 6 7 10 13 16 17 20 25 28 31 35 36 38 39 40 41 LCS_GDT Q 4 Q 4 4 5 25 3 3 4 4 6 7 10 12 16 17 19 23 26 31 33 36 38 39 40 41 LCS_GDT G 5 G 5 4 5 25 2 3 4 5 6 9 11 17 18 20 21 25 26 31 32 36 38 39 40 41 LCS_GDT P 6 P 6 4 5 25 3 3 7 12 14 16 19 22 25 26 27 28 29 31 35 36 38 39 40 41 LCS_GDT W 7 W 7 4 6 25 3 3 4 8 11 18 22 24 25 26 27 28 29 31 35 36 38 39 40 41 LCS_GDT V 8 V 8 5 6 25 3 6 11 14 16 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT G 9 G 9 5 6 25 4 4 9 12 15 17 20 23 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT S 10 S 10 5 6 25 4 4 5 5 7 12 17 18 20 23 24 27 29 32 35 36 38 39 40 41 LCS_GDT S 11 S 11 5 6 25 4 4 5 5 7 9 11 15 20 24 25 28 29 32 35 36 38 39 40 41 LCS_GDT Y 12 Y 12 5 6 25 4 4 5 5 7 8 10 12 16 17 24 27 29 32 35 36 38 39 40 41 LCS_GDT V 13 V 13 5 6 25 4 4 5 5 6 8 10 13 16 17 23 27 29 32 35 36 38 39 40 41 LCS_GDT A 14 A 14 5 5 25 4 4 5 5 7 9 11 12 16 17 19 23 25 31 33 34 35 38 39 41 LCS_GDT E 15 E 15 5 5 25 4 4 5 5 5 6 7 12 15 17 19 21 25 25 29 30 32 33 39 41 LCS_GDT T 16 T 16 5 5 28 4 4 5 5 7 9 11 13 16 17 19 24 28 31 35 36 38 39 40 41 LCS_GDT G 17 G 17 5 5 28 3 4 5 5 5 6 8 10 14 16 20 25 27 31 33 36 38 39 40 41 LCS_GDT Q 18 Q 18 4 4 28 3 3 4 5 7 9 11 13 16 20 23 27 29 32 35 36 38 39 40 41 LCS_GDT N 19 N 19 4 15 28 3 3 4 4 6 12 17 21 22 25 26 28 29 32 35 36 38 39 40 41 LCS_GDT W 20 W 20 12 15 28 8 10 12 14 15 17 20 23 25 26 27 28 29 32 34 36 38 39 40 41 LCS_GDT A 21 A 21 12 15 28 8 10 12 14 15 18 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT S 22 S 22 12 15 28 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT L 23 L 23 12 15 28 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT A 24 A 24 12 15 28 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT A 25 A 25 12 15 28 8 10 11 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT N 26 N 26 12 15 28 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT E 27 E 27 12 15 28 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT L 28 L 28 12 15 28 5 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT R 29 R 29 12 15 28 5 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT V 30 V 30 12 15 28 5 8 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT T 31 T 31 12 15 28 4 8 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT E 32 E 32 12 15 28 4 8 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT R 33 R 33 12 15 28 4 7 11 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT P 34 P 34 4 15 28 2 3 4 5 8 13 18 22 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT F 35 F 35 5 15 28 4 5 6 10 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT W 36 W 36 5 15 28 4 5 6 12 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT I 37 I 37 5 15 28 4 6 9 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT S 38 S 38 7 15 28 4 5 8 12 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT S 39 S 39 7 15 28 4 6 8 10 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT F 40 F 40 7 11 28 3 6 8 12 15 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT I 41 I 41 7 11 28 4 4 8 9 11 17 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT G 42 G 42 7 11 28 4 4 8 10 11 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 LCS_GDT R 43 R 43 7 11 28 4 6 8 10 11 16 21 24 25 26 27 28 29 31 33 36 37 39 40 40 LCS_GDT S 44 S 44 7 11 28 4 6 8 10 11 11 14 16 19 23 27 27 28 29 29 31 31 33 35 35 LCS_GDT K 45 K 45 7 11 28 3 6 8 10 11 11 13 16 18 18 23 26 26 28 29 31 31 32 35 35 LCS_AVERAGE LCS_A: 34.16 ( 16.68 24.33 61.47 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 12 14 17 19 22 24 25 26 27 28 29 32 35 36 38 39 40 41 GDT PERCENT_AT 18.18 22.73 27.27 31.82 38.64 43.18 50.00 54.55 56.82 59.09 61.36 63.64 65.91 72.73 79.55 81.82 86.36 88.64 90.91 93.18 GDT RMS_LOCAL 0.33 0.60 0.93 1.09 1.85 2.04 2.34 2.57 2.67 2.80 2.92 3.15 3.41 4.74 5.30 5.32 5.65 5.78 5.89 6.21 GDT RMS_ALL_AT 10.06 9.38 8.83 8.93 8.32 8.23 8.41 8.43 8.36 8.21 8.28 8.31 8.03 7.16 6.98 7.01 6.99 7.01 6.96 7.05 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 12.174 0 0.047 0.062 13.177 0.000 0.000 - LGA V 3 V 3 11.075 0 0.042 0.121 11.640 0.000 0.000 10.197 LGA Q 4 Q 4 12.893 0 0.347 0.864 15.891 0.000 0.000 14.285 LGA G 5 G 5 10.593 0 0.128 0.128 11.537 0.000 0.000 - LGA P 6 P 6 6.334 0 0.663 0.581 8.553 0.909 0.519 6.835 LGA W 7 W 7 3.638 0 0.399 1.240 11.813 21.364 6.234 11.813 LGA V 8 V 8 2.015 0 0.633 0.864 5.632 32.727 26.753 5.632 LGA G 9 G 9 5.825 0 0.228 0.228 9.519 1.364 1.364 - LGA S 10 S 10 11.452 0 0.050 0.580 13.892 0.000 0.000 12.087 LGA S 11 S 11 10.759 0 0.247 0.645 13.500 0.000 0.000 10.140 LGA Y 12 Y 12 12.226 0 0.592 1.381 15.753 0.000 0.000 7.253 LGA V 13 V 13 15.536 0 0.637 0.614 16.989 0.000 0.000 16.989 LGA A 14 A 14 19.081 0 0.030 0.035 20.604 0.000 0.000 - LGA E 15 E 15 19.786 0 0.009 1.446 27.007 0.000 0.000 27.007 LGA T 16 T 16 15.624 0 0.148 1.166 16.852 0.000 0.000 14.345 LGA G 17 G 17 15.417 0 0.193 0.193 15.417 0.000 0.000 - LGA Q 18 Q 18 13.474 0 0.580 0.914 20.716 0.000 0.000 17.930 LGA N 19 N 19 8.655 0 0.035 0.994 13.050 0.000 0.000 13.050 LGA W 20 W 20 4.717 0 0.600 1.451 13.948 7.727 2.208 13.948 LGA A 21 A 21 3.517 0 0.028 0.031 4.026 20.455 17.455 - LGA S 22 S 22 1.387 0 0.014 0.634 2.319 62.727 56.667 2.027 LGA L 23 L 23 2.166 0 0.045 0.089 4.968 51.364 30.909 4.968 LGA A 24 A 24 1.698 0 0.021 0.034 2.559 62.273 55.273 - LGA A 25 A 25 1.480 0 0.061 0.062 1.916 61.818 59.636 - LGA N 26 N 26 1.709 0 0.072 0.113 2.460 55.455 46.818 2.460 LGA E 27 E 27 1.586 0 0.052 0.803 6.190 58.182 35.960 6.190 LGA L 28 L 28 1.151 0 0.077 0.079 2.171 55.000 72.955 0.948 LGA R 29 R 29 2.155 0 0.099 1.564 9.363 38.636 20.000 9.363 LGA V 30 V 30 2.257 0 0.082 0.094 2.899 47.727 40.519 2.899 LGA T 31 T 31 1.840 0 0.062 0.074 2.161 44.545 45.455 2.036 LGA E 32 E 32 2.683 0 0.110 1.169 3.501 32.727 28.283 2.386 LGA R 33 R 33 3.187 0 0.100 0.864 9.612 9.545 4.132 9.612 LGA P 34 P 34 5.044 0 0.419 0.597 7.465 2.727 1.558 7.465 LGA F 35 F 35 2.230 0 0.658 1.423 8.653 41.364 16.694 8.425 LGA W 36 W 36 2.617 0 0.073 1.172 8.857 41.818 15.065 6.430 LGA I 37 I 37 1.616 0 0.046 0.346 3.071 51.364 42.273 3.071 LGA S 38 S 38 2.541 0 0.025 0.088 3.262 30.000 26.061 3.148 LGA S 39 S 39 2.782 0 0.110 0.137 4.084 38.636 28.485 4.084 LGA F 40 F 40 2.686 0 0.041 0.941 4.752 30.909 15.537 4.752 LGA I 41 I 41 3.621 0 0.641 1.580 7.702 15.455 9.318 7.702 LGA G 42 G 42 2.932 0 0.095 0.095 3.673 18.636 18.636 - LGA R 43 R 43 4.726 0 0.014 1.201 10.929 3.182 1.983 10.929 LGA S 44 S 44 8.079 0 0.094 0.651 11.159 0.000 0.000 11.159 LGA K 45 K 45 10.110 0 0.640 0.566 14.998 0.000 0.000 14.998 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 6.880 6.849 7.914 21.333 16.517 8.779 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 24 2.57 47.727 42.476 0.899 LGA_LOCAL RMSD: 2.570 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.432 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 6.880 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.840722 * X + 0.393191 * Y + -0.372274 * Z + 1.089522 Y_new = 0.466152 * X + 0.175786 * Y + -0.867065 * Z + 71.710609 Z_new = -0.275481 * X + -0.902497 * Y + -0.331074 * Z + 18.403099 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.635327 0.279090 -1.922396 [DEG: 150.9931 15.9907 -110.1452 ] ZXZ: -0.405549 1.908238 -2.845332 [DEG: -23.2363 109.3340 -163.0255 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS457_5-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS457_5-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 24 2.57 42.476 6.88 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS457_5-D1 PFRMAT TS TARGET T0953s2 MODEL 5 PARENT N/A ATOM 20 N ALA 2 0.238 28.882 11.314 1.00 11.07 N ATOM 21 CA ALA 2 0.790 29.696 10.231 1.00 11.07 C ATOM 22 C ALA 2 1.006 28.887 8.950 1.00 11.07 C ATOM 23 O ALA 2 1.312 27.687 8.995 1.00 11.07 O ATOM 24 CB ALA 2 2.092 30.312 10.675 1.00 11.07 C ATOM 30 N VAL 3 0.869 29.571 7.811 1.00 11.41 N ATOM 31 CA VAL 3 1.011 28.973 6.487 1.00 11.41 C ATOM 32 C VAL 3 2.403 28.402 6.248 1.00 11.41 C ATOM 33 O VAL 3 3.414 29.080 6.426 1.00 11.41 O ATOM 34 CB VAL 3 0.709 30.022 5.400 1.00 11.41 C ATOM 35 CG1 VAL 3 0.987 29.454 4.017 1.00 11.41 C ATOM 36 CG2 VAL 3 -0.738 30.481 5.513 1.00 11.41 C ATOM 46 N GLN 4 2.460 27.169 5.761 1.00 10.50 N ATOM 47 CA GLN 4 3.745 26.512 5.546 1.00 10.50 C ATOM 48 C GLN 4 4.371 26.878 4.199 1.00 10.50 C ATOM 49 O GLN 4 4.366 26.090 3.251 1.00 10.50 O ATOM 50 CB GLN 4 3.569 25.003 5.685 1.00 10.50 C ATOM 51 CG GLN 4 3.061 24.581 7.078 1.00 10.50 C ATOM 52 CD GLN 4 4.063 24.862 8.197 1.00 10.50 C ATOM 53 OE1 GLN 4 5.145 24.261 8.240 1.00 10.50 O ATOM 54 NE2 GLN 4 3.708 25.770 9.112 1.00 10.50 N ATOM 63 N GLY 5 4.883 28.098 4.137 1.00 9.36 N ATOM 64 CA GLY 5 5.473 28.674 2.931 1.00 9.36 C ATOM 65 C GLY 5 6.190 29.985 3.271 1.00 9.36 C ATOM 66 O GLY 5 6.567 30.200 4.425 1.00 9.36 O ATOM 70 N PRO 6 6.426 30.862 2.279 1.00 8.54 N ATOM 71 CA PRO 6 7.103 32.142 2.401 1.00 8.54 C ATOM 72 C PRO 6 6.536 33.012 3.518 1.00 8.54 C ATOM 73 O PRO 6 5.325 33.078 3.737 1.00 8.54 O ATOM 74 CB PRO 6 6.861 32.773 1.025 1.00 8.54 C ATOM 75 CG PRO 6 6.790 31.611 0.096 1.00 8.54 C ATOM 76 CD PRO 6 6.047 30.556 0.873 1.00 8.54 C ATOM 84 N TRP 7 7.437 33.650 4.256 1.00 8.34 N ATOM 85 CA TRP 7 7.131 34.431 5.459 1.00 8.34 C ATOM 86 C TRP 7 6.282 35.697 5.226 1.00 8.34 C ATOM 87 O TRP 7 5.689 36.225 6.169 1.00 8.34 O ATOM 88 CB TRP 7 8.441 34.837 6.138 1.00 8.34 C ATOM 89 CG TRP 7 9.239 35.831 5.351 1.00 8.34 C ATOM 90 CD1 TRP 7 10.164 35.556 4.389 1.00 8.34 C ATOM 91 CD2 TRP 7 9.188 37.275 5.455 1.00 8.34 C ATOM 92 NE1 TRP 7 10.691 36.722 3.891 1.00 8.34 N ATOM 93 CE2 TRP 7 10.103 37.784 4.531 1.00 8.34 C ATOM 94 CE3 TRP 7 8.448 38.162 6.248 1.00 8.34 C ATOM 95 CZ2 TRP 7 10.306 39.146 4.372 1.00 8.34 C ATOM 96 CZ3 TRP 7 8.650 39.528 6.088 1.00 8.34 C ATOM 97 CH2 TRP 7 9.555 40.006 5.174 1.00 8.34 C ATOM 108 N VAL 8 6.243 36.201 3.986 1.00 7.99 N ATOM 109 CA VAL 8 5.607 37.487 3.708 1.00 7.99 C ATOM 110 C VAL 8 4.407 37.362 2.783 1.00 7.99 C ATOM 111 O VAL 8 4.445 36.659 1.773 1.00 7.99 O ATOM 112 CB VAL 8 6.625 38.453 3.075 1.00 7.99 C ATOM 113 CG1 VAL 8 7.031 37.966 1.692 1.00 7.99 C ATOM 114 CG2 VAL 8 6.035 39.853 3.003 1.00 7.99 C ATOM 124 N GLY 9 3.360 38.115 3.096 1.00 7.87 N ATOM 125 CA GLY 9 2.121 38.127 2.329 1.00 7.87 C ATOM 126 C GLY 9 2.275 38.508 0.850 1.00 7.87 C ATOM 127 O GLY 9 1.404 38.218 0.028 1.00 7.87 O ATOM 131 N SER 10 3.390 39.138 0.500 1.00 7.77 N ATOM 132 CA SER 10 3.684 39.525 -0.875 1.00 7.77 C ATOM 133 C SER 10 3.765 38.341 -1.847 1.00 7.77 C ATOM 134 O SER 10 3.677 38.528 -3.062 1.00 7.77 O ATOM 135 CB SER 10 4.992 40.292 -0.910 1.00 7.77 C ATOM 136 OG SER 10 4.876 41.511 -0.227 1.00 7.77 O ATOM 142 N SER 11 3.963 37.130 -1.326 1.00 7.86 N ATOM 143 CA SER 11 3.981 35.921 -2.141 1.00 7.86 C ATOM 144 C SER 11 2.613 35.231 -2.256 1.00 7.86 C ATOM 145 O SER 11 2.508 34.163 -2.862 1.00 7.86 O ATOM 146 CB SER 11 4.991 34.948 -1.567 1.00 7.86 C ATOM 147 OG SER 11 6.290 35.468 -1.641 1.00 7.86 O ATOM 153 N TYR 12 1.574 35.816 -1.660 1.00 7.99 N ATOM 154 CA TYR 12 0.260 35.172 -1.627 1.00 7.99 C ATOM 155 C TYR 12 -0.921 35.886 -2.278 1.00 7.99 C ATOM 156 O TYR 12 -0.919 37.095 -2.512 1.00 7.99 O ATOM 157 CB TYR 12 -0.099 34.881 -0.169 1.00 7.99 C ATOM 158 CG TYR 12 0.885 33.970 0.532 1.00 7.99 C ATOM 159 CD1 TYR 12 2.025 34.501 1.117 1.00 7.99 C ATOM 160 CD2 TYR 12 0.647 32.605 0.590 1.00 7.99 C ATOM 161 CE1 TYR 12 2.924 33.669 1.757 1.00 7.99 C ATOM 162 CE2 TYR 12 1.546 31.774 1.230 1.00 7.99 C ATOM 163 CZ TYR 12 2.680 32.302 1.811 1.00 7.99 C ATOM 164 OH TYR 12 3.575 31.474 2.449 1.00 7.99 O ATOM 174 N VAL 13 -1.979 35.099 -2.478 1.00 7.78 N ATOM 175 CA VAL 13 -3.306 35.579 -2.833 1.00 7.78 C ATOM 176 C VAL 13 -3.709 36.418 -1.658 1.00 7.78 C ATOM 177 O VAL 13 -3.511 35.971 -0.532 1.00 7.78 O ATOM 178 CB VAL 13 -4.310 34.431 -3.059 1.00 7.78 C ATOM 179 CG1 VAL 13 -5.710 34.983 -3.274 1.00 7.78 C ATOM 180 CG2 VAL 13 -3.873 33.588 -4.247 1.00 7.78 C ATOM 190 N ALA 14 -4.250 37.611 -1.863 1.00 7.97 N ATOM 191 CA ALA 14 -4.574 38.409 -0.690 1.00 7.97 C ATOM 192 C ALA 14 -5.506 37.709 0.295 1.00 7.97 C ATOM 193 O ALA 14 -5.302 37.839 1.493 1.00 7.97 O ATOM 194 CB ALA 14 -5.205 39.721 -1.104 1.00 7.97 C ATOM 200 N GLU 15 -6.466 36.911 -0.156 1.00 7.92 N ATOM 201 CA GLU 15 -7.351 36.289 0.833 1.00 7.92 C ATOM 202 C GLU 15 -6.575 35.388 1.810 1.00 7.92 C ATOM 203 O GLU 15 -6.874 35.333 3.011 1.00 7.92 O ATOM 204 CB GLU 15 -8.434 35.474 0.119 1.00 7.92 C ATOM 205 CG GLU 15 -9.457 36.318 -0.645 1.00 7.92 C ATOM 206 CD GLU 15 -10.471 35.486 -1.398 1.00 7.92 C ATOM 207 OE1 GLU 15 -10.314 34.288 -1.444 1.00 7.92 O ATOM 208 OE2 GLU 15 -11.402 36.052 -1.922 1.00 7.92 O ATOM 215 N THR 16 -5.557 34.700 1.293 1.00 7.81 N ATOM 216 CA THR 16 -4.731 33.828 2.113 1.00 7.81 C ATOM 217 C THR 16 -3.987 34.649 3.155 1.00 7.81 C ATOM 218 O THR 16 -3.881 34.270 4.325 1.00 7.81 O ATOM 219 CB THR 16 -3.728 33.034 1.255 1.00 7.81 C ATOM 220 OG1 THR 16 -4.442 32.170 0.360 1.00 7.81 O ATOM 221 CG2 THR 16 -2.814 32.198 2.138 1.00 7.81 C ATOM 229 N GLY 17 -3.435 35.768 2.704 1.00 7.58 N ATOM 230 CA GLY 17 -2.682 36.679 3.535 1.00 7.58 C ATOM 231 C GLY 17 -3.549 37.273 4.636 1.00 7.58 C ATOM 232 O GLY 17 -3.080 37.549 5.749 1.00 7.58 O ATOM 236 N GLN 18 -4.819 37.516 4.327 1.00 7.30 N ATOM 237 CA GLN 18 -5.727 38.076 5.304 1.00 7.30 C ATOM 238 C GLN 18 -6.019 37.022 6.358 1.00 7.30 C ATOM 239 O GLN 18 -5.871 37.280 7.555 1.00 7.30 O ATOM 240 CB GLN 18 -7.023 38.551 4.643 1.00 7.30 C ATOM 241 CG GLN 18 -6.846 39.731 3.702 1.00 7.30 C ATOM 242 CD GLN 18 -8.102 40.030 2.907 1.00 7.30 C ATOM 243 OE1 GLN 18 -9.220 39.916 3.418 1.00 7.30 O ATOM 244 NE2 GLN 18 -7.927 40.416 1.648 1.00 7.30 N ATOM 253 N ASN 19 -6.318 35.792 5.920 1.00 6.94 N ATOM 254 CA ASN 19 -6.610 34.735 6.877 1.00 6.94 C ATOM 255 C ASN 19 -5.360 34.334 7.656 1.00 6.94 C ATOM 256 O ASN 19 -5.452 34.067 8.856 1.00 6.94 O ATOM 257 CB ASN 19 -7.212 33.533 6.172 1.00 6.94 C ATOM 258 CG ASN 19 -8.629 33.771 5.731 1.00 6.94 C ATOM 259 OD1 ASN 19 -9.331 34.622 6.290 1.00 6.94 O ATOM 260 ND2 ASN 19 -9.063 33.037 4.739 1.00 6.94 N ATOM 267 N TRP 20 -4.177 34.359 7.023 1.00 6.68 N ATOM 268 CA TRP 20 -2.965 33.999 7.762 1.00 6.68 C ATOM 269 C TRP 20 -2.799 34.928 8.941 1.00 6.68 C ATOM 270 O TRP 20 -2.483 34.493 10.042 1.00 6.68 O ATOM 271 CB TRP 20 -1.729 34.072 6.865 1.00 6.68 C ATOM 272 CG TRP 20 -0.459 33.690 7.563 1.00 6.68 C ATOM 273 CD1 TRP 20 -0.304 33.438 8.893 1.00 6.68 C ATOM 274 CD2 TRP 20 0.848 33.510 6.966 1.00 6.68 C ATOM 275 NE1 TRP 20 1.003 33.118 9.164 1.00 6.68 N ATOM 276 CE2 TRP 20 1.721 33.155 7.996 1.00 6.68 C ATOM 277 CE3 TRP 20 1.339 33.620 5.659 1.00 6.68 C ATOM 278 CZ2 TRP 20 3.066 32.909 7.766 1.00 6.68 C ATOM 279 CZ3 TRP 20 2.687 33.371 5.427 1.00 6.68 C ATOM 280 CH2 TRP 20 3.527 33.024 6.455 1.00 6.68 C ATOM 291 N ALA 21 -2.988 36.229 8.711 1.00 6.45 N ATOM 292 CA ALA 21 -2.842 37.181 9.804 1.00 6.45 C ATOM 293 C ALA 21 -3.786 36.867 10.964 1.00 6.45 C ATOM 294 O ALA 21 -3.404 37.001 12.128 1.00 6.45 O ATOM 295 CB ALA 21 -3.091 38.587 9.301 1.00 6.45 C ATOM 301 N SER 22 -5.011 36.421 10.666 1.00 7.05 N ATOM 302 CA SER 22 -5.960 36.086 11.722 1.00 7.05 C ATOM 303 C SER 22 -5.408 35.010 12.640 1.00 7.05 C ATOM 304 O SER 22 -5.540 35.063 13.868 1.00 7.05 O ATOM 305 CB SER 22 -7.271 35.620 11.118 1.00 7.05 C ATOM 306 OG SER 22 -8.205 35.316 12.118 1.00 7.05 O ATOM 312 N LEU 23 -4.782 34.027 12.030 1.00 6.84 N ATOM 313 CA LEU 23 -4.182 32.942 12.754 1.00 6.84 C ATOM 314 C LEU 23 -2.895 33.400 13.441 1.00 6.84 C ATOM 315 O LEU 23 -2.644 33.047 14.599 1.00 6.84 O ATOM 316 CB LEU 23 -3.891 31.774 11.803 1.00 6.84 C ATOM 317 CG LEU 23 -5.119 31.110 11.168 1.00 6.84 C ATOM 318 CD1 LEU 23 -4.668 30.091 10.131 1.00 6.84 C ATOM 319 CD2 LEU 23 -5.958 30.450 12.254 1.00 6.84 C ATOM 331 N ALA 24 -2.108 34.243 12.757 1.00 6.58 N ATOM 332 CA ALA 24 -0.845 34.709 13.308 1.00 6.58 C ATOM 333 C ALA 24 -1.084 35.470 14.594 1.00 6.58 C ATOM 334 O ALA 24 -0.283 35.388 15.517 1.00 6.58 O ATOM 335 CB ALA 24 -0.126 35.606 12.328 1.00 6.58 C ATOM 341 N ALA 25 -2.203 36.179 14.687 1.00 6.43 N ATOM 342 CA ALA 25 -2.499 36.977 15.861 1.00 6.43 C ATOM 343 C ALA 25 -2.450 36.117 17.099 1.00 6.43 C ATOM 344 O ALA 25 -2.045 36.563 18.175 1.00 6.43 O ATOM 345 CB ALA 25 -3.851 37.606 15.714 1.00 6.43 C ATOM 351 N ASN 26 -2.851 34.855 16.965 1.00 7.02 N ATOM 352 CA ASN 26 -2.813 34.003 18.132 1.00 7.02 C ATOM 353 C ASN 26 -1.354 33.573 18.392 1.00 7.02 C ATOM 354 O ASN 26 -0.842 33.733 19.504 1.00 7.02 O ATOM 355 CB ASN 26 -3.726 32.804 17.953 1.00 7.02 C ATOM 356 CG ASN 26 -5.182 33.174 18.009 1.00 7.02 C ATOM 357 OD1 ASN 26 -5.554 34.191 18.605 1.00 7.02 O ATOM 358 ND2 ASN 26 -6.013 32.368 17.399 1.00 7.02 N ATOM 365 N GLU 27 -0.642 33.133 17.338 1.00 7.33 N ATOM 366 CA GLU 27 0.719 32.576 17.497 1.00 7.33 C ATOM 367 C GLU 27 1.704 33.631 18.009 1.00 7.33 C ATOM 368 O GLU 27 2.610 33.344 18.796 1.00 7.33 O ATOM 369 CB GLU 27 1.290 32.042 16.159 1.00 7.33 C ATOM 370 CG GLU 27 0.641 30.779 15.592 1.00 7.33 C ATOM 371 CD GLU 27 1.373 30.187 14.393 1.00 7.33 C ATOM 372 OE1 GLU 27 2.285 30.802 13.897 1.00 7.33 O ATOM 373 OE2 GLU 27 1.003 29.093 13.970 1.00 7.33 O ATOM 380 N LEU 28 1.504 34.851 17.538 1.00 6.98 N ATOM 381 CA LEU 28 2.310 36.021 17.825 1.00 6.98 C ATOM 382 C LEU 28 1.858 36.794 19.067 1.00 6.98 C ATOM 383 O LEU 28 2.548 37.716 19.500 1.00 6.98 O ATOM 384 CB LEU 28 2.291 36.958 16.611 1.00 6.98 C ATOM 385 CG LEU 28 2.835 36.365 15.304 1.00 6.98 C ATOM 386 CD1 LEU 28 2.690 37.385 14.183 1.00 6.98 C ATOM 387 CD2 LEU 28 4.291 35.966 15.495 1.00 6.98 C ATOM 399 N ARG 29 0.692 36.448 19.625 1.00 6.98 N ATOM 400 CA ARG 29 0.075 37.184 20.731 1.00 6.98 C ATOM 401 C ARG 29 -0.051 38.690 20.458 1.00 6.98 C ATOM 402 O ARG 29 0.359 39.520 21.276 1.00 6.98 O ATOM 403 CB ARG 29 0.880 36.978 22.005 1.00 6.98 C ATOM 404 CG ARG 29 0.968 35.537 22.481 1.00 6.98 C ATOM 405 CD ARG 29 1.708 35.426 23.765 1.00 6.98 C ATOM 406 NE ARG 29 1.820 34.046 24.208 1.00 6.98 N ATOM 407 CZ ARG 29 2.471 33.649 25.319 1.00 6.98 C ATOM 408 NH1 ARG 29 3.061 34.538 26.086 1.00 6.98 N ATOM 409 NH2 ARG 29 2.516 32.367 25.637 1.00 6.98 N ATOM 423 N VAL 30 -0.636 39.039 19.318 1.00 6.89 N ATOM 424 CA VAL 30 -0.779 40.426 18.891 1.00 6.89 C ATOM 425 C VAL 30 -2.238 40.874 18.938 1.00 6.89 C ATOM 426 O VAL 30 -3.129 40.174 18.464 1.00 6.89 O ATOM 427 CB VAL 30 -0.237 40.602 17.459 1.00 6.89 C ATOM 428 CG1 VAL 30 -0.501 42.014 16.959 1.00 6.89 C ATOM 429 CG2 VAL 30 1.251 40.287 17.426 1.00 6.89 C ATOM 439 N THR 31 -2.477 42.047 19.535 1.00 7.17 N ATOM 440 CA THR 31 -3.834 42.519 19.821 1.00 7.17 C ATOM 441 C THR 31 -4.322 43.536 18.786 1.00 7.17 C ATOM 442 O THR 31 -5.463 43.995 18.830 1.00 7.17 O ATOM 443 CB THR 31 -3.913 43.141 21.227 1.00 7.17 C ATOM 444 OG1 THR 31 -3.043 44.278 21.298 1.00 7.17 O ATOM 445 CG2 THR 31 -3.504 42.126 22.284 1.00 7.17 C ATOM 453 N GLU 32 -3.428 43.885 17.878 1.00 7.57 N ATOM 454 CA GLU 32 -3.658 44.845 16.806 1.00 7.57 C ATOM 455 C GLU 32 -4.423 44.125 15.706 1.00 7.57 C ATOM 456 O GLU 32 -4.460 42.899 15.704 1.00 7.57 O ATOM 457 CB GLU 32 -2.341 45.413 16.270 1.00 7.57 C ATOM 458 CG GLU 32 -1.552 46.231 17.282 1.00 7.57 C ATOM 459 CD GLU 32 -2.263 47.487 17.702 1.00 7.57 C ATOM 460 OE1 GLU 32 -3.377 47.685 17.281 1.00 7.57 O ATOM 461 OE2 GLU 32 -1.692 48.249 18.446 1.00 7.57 O ATOM 468 N ARG 33 -5.120 44.854 14.842 1.00 7.18 N ATOM 469 CA ARG 33 -5.961 44.190 13.847 1.00 7.18 C ATOM 470 C ARG 33 -5.203 43.350 12.768 1.00 7.18 C ATOM 471 O ARG 33 -4.367 43.862 12.028 1.00 7.18 O ATOM 472 CB ARG 33 -6.806 45.242 13.143 1.00 7.18 C ATOM 473 CG ARG 33 -7.800 45.966 14.036 1.00 7.18 C ATOM 474 CD ARG 33 -8.975 45.114 14.355 1.00 7.18 C ATOM 475 NE ARG 33 -9.972 45.834 15.131 1.00 7.18 N ATOM 476 CZ ARG 33 -11.165 45.328 15.500 1.00 7.18 C ATOM 477 NH1 ARG 33 -11.493 44.102 15.158 1.00 7.18 N ATOM 478 NH2 ARG 33 -12.004 46.064 16.207 1.00 7.18 N ATOM 492 N PRO 34 -5.489 42.032 12.661 1.00 6.81 N ATOM 493 CA PRO 34 -4.858 41.063 11.766 1.00 6.81 C ATOM 494 C PRO 34 -5.416 41.052 10.349 1.00 6.81 C ATOM 495 O PRO 34 -6.041 40.094 9.927 1.00 6.81 O ATOM 496 CB PRO 34 -5.143 39.735 12.475 1.00 6.81 C ATOM 497 CG PRO 34 -6.476 39.937 13.108 1.00 6.81 C ATOM 498 CD PRO 34 -6.448 41.361 13.595 1.00 6.81 C ATOM 506 N PHE 35 -5.206 42.140 9.642 1.00 6.71 N ATOM 507 CA PHE 35 -5.783 42.345 8.303 1.00 6.71 C ATOM 508 C PHE 35 -4.978 41.842 7.120 1.00 6.71 C ATOM 509 O PHE 35 -5.536 41.452 6.100 1.00 6.71 O ATOM 510 CB PHE 35 -6.041 43.838 8.094 1.00 6.71 C ATOM 511 CG PHE 35 -7.201 44.369 8.886 1.00 6.71 C ATOM 512 CD1 PHE 35 -8.035 43.509 9.584 1.00 6.71 C ATOM 513 CD2 PHE 35 -7.462 45.731 8.935 1.00 6.71 C ATOM 514 CE1 PHE 35 -9.102 43.997 10.314 1.00 6.71 C ATOM 515 CE2 PHE 35 -8.527 46.220 9.664 1.00 6.71 C ATOM 516 CZ PHE 35 -9.349 45.352 10.355 1.00 6.71 C ATOM 526 N TRP 36 -3.658 41.966 7.212 1.00 6.73 N ATOM 527 CA TRP 36 -2.766 41.458 6.179 1.00 6.73 C ATOM 528 C TRP 36 -1.418 41.088 6.758 1.00 6.73 C ATOM 529 O TRP 36 -0.687 41.948 7.291 1.00 6.73 O ATOM 530 CB TRP 36 -2.579 42.497 5.072 1.00 6.73 C ATOM 531 CG TRP 36 -2.044 41.923 3.796 1.00 6.73 C ATOM 532 CD1 TRP 36 -2.145 40.629 3.379 1.00 6.73 C ATOM 533 CD2 TRP 36 -1.318 42.624 2.757 1.00 6.73 C ATOM 534 NE1 TRP 36 -1.535 40.477 2.159 1.00 6.73 N ATOM 535 CE2 TRP 36 -1.024 41.688 1.763 1.00 6.73 C ATOM 536 CE3 TRP 36 -0.902 43.951 2.594 1.00 6.73 C ATOM 537 CZ2 TRP 36 -0.328 42.031 0.614 1.00 6.73 C ATOM 538 CZ3 TRP 36 -0.205 44.295 1.442 1.00 6.73 C ATOM 539 CH2 TRP 36 0.074 43.359 0.478 1.00 6.73 C ATOM 550 N ILE 37 -1.054 39.827 6.572 1.00 6.58 N ATOM 551 CA ILE 37 0.176 39.260 7.046 1.00 6.58 C ATOM 552 C ILE 37 1.439 39.873 6.513 1.00 6.58 C ATOM 553 O ILE 37 2.471 39.794 7.169 1.00 6.58 O ATOM 554 CB ILE 37 0.200 37.753 6.731 1.00 6.58 C ATOM 555 CG1 ILE 37 1.262 37.048 7.577 1.00 6.58 C ATOM 556 CG2 ILE 37 0.456 37.524 5.249 1.00 6.58 C ATOM 557 CD1 ILE 37 0.939 37.008 9.054 1.00 6.58 C ATOM 569 N SER 38 1.376 40.552 5.358 1.00 6.65 N ATOM 570 CA SER 38 2.597 41.079 4.771 1.00 6.65 C ATOM 571 C SER 38 3.312 42.034 5.724 1.00 6.65 C ATOM 572 O SER 38 4.527 42.213 5.619 1.00 6.65 O ATOM 573 CB SER 38 2.280 41.790 3.470 1.00 6.65 C ATOM 574 OG SER 38 1.622 43.003 3.708 1.00 6.65 O ATOM 580 N SER 39 2.569 42.645 6.663 1.00 6.69 N ATOM 581 CA SER 39 3.206 43.502 7.646 1.00 6.69 C ATOM 582 C SER 39 2.904 42.996 9.055 1.00 6.69 C ATOM 583 O SER 39 3.714 43.160 9.967 1.00 6.69 O ATOM 584 CB SER 39 2.725 44.932 7.488 1.00 6.69 C ATOM 585 OG SER 39 1.363 45.041 7.800 1.00 6.69 O ATOM 591 N PHE 40 1.779 42.289 9.223 1.00 7.26 N ATOM 592 CA PHE 40 1.332 41.828 10.542 1.00 7.26 C ATOM 593 C PHE 40 2.372 40.864 11.132 1.00 7.26 C ATOM 594 O PHE 40 2.610 40.860 12.342 1.00 7.26 O ATOM 595 CB PHE 40 -0.030 41.139 10.443 1.00 7.26 C ATOM 596 CG PHE 40 -0.698 40.923 11.771 1.00 7.26 C ATOM 597 CD1 PHE 40 -1.278 41.983 12.452 1.00 7.26 C ATOM 598 CD2 PHE 40 -0.747 39.661 12.342 1.00 7.26 C ATOM 599 CE1 PHE 40 -1.893 41.787 13.674 1.00 7.26 C ATOM 600 CE2 PHE 40 -1.362 39.461 13.563 1.00 7.26 C ATOM 601 CZ PHE 40 -1.935 40.525 14.230 1.00 7.26 C ATOM 611 N ILE 41 3.014 40.059 10.273 1.00 7.18 N ATOM 612 CA ILE 41 4.002 39.071 10.704 1.00 7.18 C ATOM 613 C ILE 41 5.151 39.673 11.532 1.00 7.18 C ATOM 614 O ILE 41 5.825 38.946 12.262 1.00 7.18 O ATOM 615 CB ILE 41 4.591 38.344 9.482 1.00 7.18 C ATOM 616 CG1 ILE 41 5.377 37.107 9.923 1.00 7.18 C ATOM 617 CG2 ILE 41 5.479 39.284 8.680 1.00 7.18 C ATOM 618 CD1 ILE 41 4.513 36.009 10.501 1.00 7.18 C ATOM 630 N GLY 42 5.423 40.977 11.381 1.00 7.46 N ATOM 631 CA GLY 42 6.543 41.616 12.055 1.00 7.46 C ATOM 632 C GLY 42 6.116 42.606 13.139 1.00 7.46 C ATOM 633 O GLY 42 6.933 43.402 13.610 1.00 7.46 O ATOM 637 N ARG 43 4.845 42.586 13.528 1.00 7.85 N ATOM 638 CA ARG 43 4.361 43.567 14.490 1.00 7.85 C ATOM 639 C ARG 43 4.567 43.131 15.937 1.00 7.85 C ATOM 640 O ARG 43 4.607 41.940 16.252 1.00 7.85 O ATOM 641 CB ARG 43 2.888 43.844 14.273 1.00 7.85 C ATOM 642 CG ARG 43 2.512 44.257 12.855 1.00 7.85 C ATOM 643 CD ARG 43 2.892 45.651 12.515 1.00 7.85 C ATOM 644 NE ARG 43 2.365 46.038 11.208 1.00 7.85 N ATOM 645 CZ ARG 43 2.444 47.274 10.672 1.00 7.85 C ATOM 646 NH1 ARG 43 3.018 48.259 11.312 1.00 7.85 N ATOM 647 NH2 ARG 43 1.935 47.528 9.486 1.00 7.85 N ATOM 661 N SER 44 4.676 44.119 16.818 1.00 7.72 N ATOM 662 CA SER 44 4.678 43.917 18.262 1.00 7.72 C ATOM 663 C SER 44 3.246 43.734 18.741 1.00 7.72 C ATOM 664 O SER 44 2.304 43.947 17.978 1.00 7.72 O ATOM 665 CB SER 44 5.324 45.091 18.970 1.00 7.72 C ATOM 666 OG SER 44 4.570 46.259 18.795 1.00 7.72 O ATOM 672 N LYS 45 3.076 43.373 20.010 1.00 7.21 N ATOM 673 CA LYS 45 1.743 43.185 20.589 1.00 7.21 C ATOM 674 C LYS 45 0.848 44.427 20.407 1.00 7.21 C ATOM 675 O LYS 45 -0.362 44.303 20.192 1.00 7.21 O ATOM 676 CB LYS 45 1.860 42.835 22.073 1.00 7.21 C ATOM 677 CG LYS 45 0.529 42.577 22.766 1.00 7.21 C ATOM 678 CD LYS 45 0.733 42.123 24.203 1.00 7.21 C ATOM 679 CE LYS 45 -0.597 41.878 24.902 1.00 7.21 C ATOM 680 NZ LYS 45 -0.412 41.434 26.310 1.00 7.21 N TER END