####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS426_2-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS426_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 2 - 39 4.89 8.05 LONGEST_CONTINUOUS_SEGMENT: 38 3 - 40 4.72 7.98 LCS_AVERAGE: 84.45 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 19 - 37 1.83 8.95 LCS_AVERAGE: 35.28 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 19 - 31 0.97 8.12 LCS_AVERAGE: 20.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 38 2 3 3 6 6 7 11 11 13 16 17 17 20 25 27 30 31 33 38 39 LCS_GDT V 3 V 3 3 7 38 0 3 5 6 8 10 12 16 18 24 27 29 32 35 36 36 38 38 38 39 LCS_GDT Q 4 Q 4 5 7 38 2 5 5 6 8 10 13 22 23 26 27 31 34 35 36 36 38 38 38 39 LCS_GDT G 5 G 5 5 7 38 3 5 5 9 12 18 21 24 26 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT P 6 P 6 5 15 38 3 5 5 6 9 13 19 24 26 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT W 7 W 7 12 18 38 3 11 12 13 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT V 8 V 8 12 18 38 9 11 12 13 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT G 9 G 9 12 18 38 9 11 12 13 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT S 10 S 10 12 18 38 9 11 12 13 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT S 11 S 11 12 18 38 9 11 12 14 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT Y 12 Y 12 12 18 38 9 11 12 14 17 18 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT V 13 V 13 12 18 38 9 11 12 14 16 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT A 14 A 14 12 18 38 9 11 12 14 16 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT E 15 E 15 12 18 38 5 11 12 13 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT T 16 T 16 12 18 38 9 11 12 13 16 18 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT G 17 G 17 12 18 38 9 11 12 13 16 18 21 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT Q 18 Q 18 12 18 38 3 3 12 13 15 18 20 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT N 19 N 19 13 19 38 6 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT W 20 W 20 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT A 21 A 21 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT S 22 S 22 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT L 23 L 23 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT A 24 A 24 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT A 25 A 25 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT N 26 N 26 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT E 27 E 27 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT L 28 L 28 13 19 38 7 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT R 29 R 29 13 19 38 7 12 12 15 17 19 22 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT V 30 V 30 13 19 38 3 12 12 15 17 19 22 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT T 31 T 31 13 19 38 3 7 12 15 17 19 22 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT E 32 E 32 6 19 38 3 6 6 6 13 18 22 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT R 33 R 33 6 19 38 2 8 12 15 17 19 22 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT P 34 P 34 6 19 38 3 7 9 14 17 18 21 23 28 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT F 35 F 35 6 19 38 3 7 12 15 17 19 22 23 26 29 32 33 34 35 36 36 38 38 38 39 LCS_GDT W 36 W 36 6 19 38 4 6 12 14 17 18 20 23 26 27 32 33 34 35 36 36 38 38 38 39 LCS_GDT I 37 I 37 6 19 38 4 6 10 15 17 19 22 23 26 27 32 33 34 35 36 36 38 38 38 39 LCS_GDT S 38 S 38 5 9 38 4 4 6 7 11 14 21 23 24 27 29 30 33 34 36 36 38 38 38 39 LCS_GDT S 39 S 39 5 9 38 4 4 6 7 8 12 16 21 24 27 29 30 30 31 36 36 38 38 38 39 LCS_GDT F 40 F 40 5 9 38 4 4 6 7 8 12 14 20 23 27 29 30 30 31 32 36 38 38 38 39 LCS_GDT I 41 I 41 5 9 37 4 4 6 7 8 12 14 18 20 24 27 29 30 30 31 32 32 33 35 39 LCS_GDT G 42 G 42 4 9 34 3 4 4 6 8 9 11 13 17 18 22 24 27 28 31 32 32 33 33 33 LCS_GDT R 43 R 43 4 9 34 3 4 6 7 8 9 11 13 17 18 20 24 25 28 30 32 32 33 33 33 LCS_GDT S 44 S 44 3 9 33 2 3 4 4 7 9 11 13 15 15 17 20 23 26 27 29 32 33 33 33 LCS_GDT K 45 K 45 3 3 15 2 3 3 3 3 7 7 7 10 12 12 14 15 19 20 20 22 23 26 27 LCS_AVERAGE LCS_A: 46.87 ( 20.87 35.28 84.45 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 12 15 17 19 22 24 28 29 32 33 34 35 36 36 38 38 38 39 GDT PERCENT_AT 20.45 27.27 27.27 34.09 38.64 43.18 50.00 54.55 63.64 65.91 72.73 75.00 77.27 79.55 81.82 81.82 86.36 86.36 86.36 88.64 GDT RMS_LOCAL 0.36 0.58 0.58 1.24 1.44 2.12 2.38 2.74 3.19 3.26 3.59 3.68 3.87 4.03 4.25 4.25 4.72 4.72 4.72 5.07 GDT RMS_ALL_AT 11.68 7.95 7.95 8.70 8.84 7.88 7.86 9.34 8.69 8.60 8.39 8.39 8.40 8.37 8.22 8.22 7.98 7.98 7.98 7.95 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 14.871 0 0.613 0.602 16.747 0.000 0.000 - LGA V 3 V 3 8.354 0 0.127 1.067 10.623 0.000 0.000 5.030 LGA Q 4 Q 4 6.868 0 0.594 0.580 9.253 0.000 0.000 8.650 LGA G 5 G 5 3.472 0 0.084 0.084 6.050 6.364 6.364 - LGA P 6 P 6 3.748 0 0.057 0.412 5.419 18.182 11.169 5.126 LGA W 7 W 7 2.826 0 0.482 1.375 14.336 33.182 9.870 14.336 LGA V 8 V 8 3.294 0 0.082 0.122 3.881 20.455 16.364 3.881 LGA G 9 G 9 2.856 0 0.095 0.095 3.087 33.636 33.636 - LGA S 10 S 10 2.106 0 0.080 0.136 3.031 48.182 39.697 3.031 LGA S 11 S 11 1.880 0 0.006 0.664 2.571 47.727 44.848 1.845 LGA Y 12 Y 12 1.994 0 0.073 1.115 7.773 47.727 21.212 7.773 LGA V 13 V 13 0.978 0 0.047 0.987 3.394 62.727 57.403 3.394 LGA A 14 A 14 2.034 0 0.049 0.045 3.592 35.455 38.545 - LGA E 15 E 15 3.764 0 0.032 1.183 5.421 12.727 11.515 3.352 LGA T 16 T 16 3.342 0 0.114 1.177 4.407 16.364 16.623 2.648 LGA G 17 G 17 3.392 0 0.691 0.691 3.392 22.727 22.727 - LGA Q 18 Q 18 3.817 0 0.060 0.288 10.091 12.273 5.455 7.708 LGA N 19 N 19 3.242 0 0.682 1.174 6.281 32.273 16.818 4.636 LGA W 20 W 20 2.420 0 0.073 1.127 9.951 45.455 18.961 9.818 LGA A 21 A 21 1.696 0 0.052 0.047 2.358 58.182 54.182 - LGA S 22 S 22 0.843 0 0.022 0.065 1.691 73.636 68.485 1.691 LGA L 23 L 23 1.349 0 0.038 1.437 5.482 61.818 40.000 5.482 LGA A 24 A 24 1.415 0 0.024 0.024 2.198 55.000 57.091 - LGA A 25 A 25 2.321 0 0.052 0.047 3.108 33.636 34.545 - LGA N 26 N 26 3.120 0 0.046 0.135 3.904 18.636 18.409 3.105 LGA E 27 E 27 3.018 0 0.078 0.844 3.581 18.636 26.263 1.882 LGA L 28 L 28 3.214 0 0.105 0.164 4.324 14.091 24.773 2.387 LGA R 29 R 29 5.211 0 0.123 1.648 6.326 1.364 3.306 5.066 LGA V 30 V 30 5.323 0 0.183 1.160 5.926 0.455 1.299 5.182 LGA T 31 T 31 8.262 0 0.668 0.571 11.786 0.000 0.000 11.786 LGA E 32 E 32 7.183 0 0.628 0.923 10.100 0.000 0.000 10.100 LGA R 33 R 33 8.293 0 0.193 1.110 13.134 0.000 0.000 13.134 LGA P 34 P 34 9.279 0 0.152 0.596 10.280 0.000 0.000 10.147 LGA F 35 F 35 8.261 0 0.109 0.204 9.339 0.000 0.000 9.339 LGA W 36 W 36 8.712 0 0.668 1.288 16.874 0.000 0.000 16.874 LGA I 37 I 37 8.799 0 0.078 1.015 11.414 0.000 0.000 5.943 LGA S 38 S 38 12.530 0 0.164 0.174 15.538 0.000 0.000 11.931 LGA S 39 S 39 14.585 0 0.172 0.195 17.007 0.000 0.000 13.041 LGA F 40 F 40 13.206 0 0.069 1.087 16.051 0.000 0.000 13.008 LGA I 41 I 41 17.189 0 0.581 0.562 21.196 0.000 0.000 17.091 LGA G 42 G 42 21.608 0 0.182 0.182 24.439 0.000 0.000 - LGA R 43 R 43 21.216 0 0.635 1.332 22.262 0.000 0.000 22.188 LGA S 44 S 44 21.268 0 0.699 0.780 24.403 0.000 0.000 20.259 LGA K 45 K 45 23.664 0 0.122 0.386 26.020 0.000 0.000 20.018 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 7.498 7.679 8.464 18.884 15.899 8.675 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 24 2.74 49.432 47.745 0.846 LGA_LOCAL RMSD: 2.738 Number of atoms: 24 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.340 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 7.498 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.473371 * X + -0.761967 * Y + 0.441957 * Z + -1.985653 Y_new = -0.769304 * X + -0.602006 * Y + -0.213917 * Z + 11.844594 Z_new = 0.429059 * X + -0.238738 * Y + -0.871156 * Z + -7.306638 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.019185 -0.443450 -2.874113 [DEG: -58.3950 -25.4078 -164.6745 ] ZXZ: 1.120013 2.628349 2.078557 [DEG: 64.1720 150.5933 119.0925 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS426_2-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS426_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 24 2.74 47.745 7.50 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS426_2-D1 PFRMAT TS TARGET T0953s2 MODEL 2 PARENT N/A ATOM 11 N ALA 2 -0.973 41.850 4.754 1.00 0.00 ATOM 12 CA ALA 2 -1.066 42.120 6.187 1.00 0.00 ATOM 13 C ALA 2 0.308 42.350 6.810 1.00 0.00 ATOM 14 O ALA 2 0.467 43.245 7.637 1.00 0.00 ATOM 15 CB ALA 2 -1.775 40.965 6.884 1.00 0.00 ATOM 17 N VAL 3 1.159 41.541 6.362 1.00 0.00 ATOM 18 CA VAL 3 2.462 41.268 6.774 1.00 0.00 ATOM 19 C VAL 3 3.492 42.090 5.969 1.00 0.00 ATOM 20 O VAL 3 3.152 42.665 4.937 1.00 0.00 ATOM 21 CB VAL 3 2.768 39.760 6.645 1.00 0.00 ATOM 22 CG1 VAL 3 1.833 38.945 7.537 1.00 0.00 ATOM 23 CG2 VAL 3 2.579 39.301 5.200 1.00 0.00 ATOM 25 N GLN 4 4.761 42.167 6.396 1.00 0.00 ATOM 26 CA GLN 4 5.875 42.806 5.844 1.00 0.00 ATOM 27 C GLN 4 6.049 42.127 4.591 1.00 0.00 ATOM 28 O GLN 4 6.345 42.764 3.583 1.00 0.00 ATOM 29 CB GLN 4 7.150 42.695 6.683 1.00 0.00 ATOM 30 CG GLN 4 6.993 43.385 8.039 1.00 0.00 ATOM 31 CD GLN 4 8.227 43.173 8.909 1.00 0.00 ATOM 32 NE2 GLN 4 8.874 44.239 9.330 1.00 0.00 ATOM 33 OE1 GLN 4 8.603 42.047 9.204 1.00 0.00 ATOM 35 N GLY 5 5.889 40.830 4.510 1.00 0.00 ATOM 36 CA GLY 5 5.906 40.026 3.261 1.00 0.00 ATOM 37 C GLY 5 5.596 38.582 3.347 1.00 0.00 ATOM 38 O GLY 5 5.395 38.060 4.441 1.00 0.00 ATOM 39 N PRO 6 5.570 37.932 2.097 1.00 0.00 ATOM 40 CA PRO 6 5.399 36.495 2.171 1.00 0.00 ATOM 41 C PRO 6 6.406 35.688 3.011 1.00 0.00 ATOM 42 O PRO 6 6.103 34.575 3.433 1.00 0.00 ATOM 43 CB PRO 6 5.490 36.123 0.690 1.00 0.00 ATOM 44 CG PRO 6 5.058 37.362 -0.063 1.00 0.00 ATOM 45 CD PRO 6 5.600 38.548 0.716 1.00 0.00 ATOM 47 N TRP 7 7.617 36.271 3.255 1.00 0.00 ATOM 48 CA TRP 7 8.595 35.727 4.123 1.00 0.00 ATOM 49 C TRP 7 8.129 35.572 5.540 1.00 0.00 ATOM 50 O TRP 7 8.399 34.553 6.171 1.00 0.00 ATOM 51 CB TRP 7 9.848 36.608 4.077 1.00 0.00 ATOM 52 CG TRP 7 10.909 36.128 5.026 1.00 0.00 ATOM 53 CD1 TRP 7 11.818 35.152 4.777 1.00 0.00 ATOM 54 CD2 TRP 7 11.169 36.594 6.360 1.00 0.00 ATOM 55 NE1 TRP 7 12.625 34.989 5.880 1.00 0.00 ATOM 56 CE2 TRP 7 12.253 35.861 6.877 1.00 0.00 ATOM 57 CE3 TRP 7 10.572 37.572 7.163 1.00 0.00 ATOM 58 CZ2 TRP 7 12.746 36.084 8.161 1.00 0.00 ATOM 59 CZ3 TRP 7 11.064 37.797 8.448 1.00 0.00 ATOM 60 CH2 TRP 7 12.143 37.059 8.944 1.00 0.00 ATOM 62 N VAL 8 7.395 36.670 5.989 1.00 0.00 ATOM 63 CA VAL 8 6.905 36.681 7.361 1.00 0.00 ATOM 64 C VAL 8 5.944 35.498 7.531 1.00 0.00 ATOM 65 O VAL 8 6.005 34.794 8.536 1.00 0.00 ATOM 66 CB VAL 8 6.187 38.003 7.719 1.00 0.00 ATOM 67 CG1 VAL 8 5.615 37.936 9.135 1.00 0.00 ATOM 68 CG2 VAL 8 7.165 39.175 7.645 1.00 0.00 ATOM 70 N GLY 9 5.087 35.304 6.542 1.00 0.00 ATOM 71 CA GLY 9 4.203 34.217 6.563 1.00 0.00 ATOM 72 C GLY 9 4.855 32.876 6.552 1.00 0.00 ATOM 73 O GLY 9 4.467 31.996 7.318 1.00 0.00 ATOM 75 N SER 10 5.874 32.741 5.659 1.00 0.00 ATOM 76 CA SER 10 6.553 31.527 5.526 1.00 0.00 ATOM 77 C SER 10 7.356 31.232 6.829 1.00 0.00 ATOM 78 O SER 10 7.403 30.089 7.278 1.00 0.00 ATOM 79 CB SER 10 7.502 31.553 4.327 1.00 0.00 ATOM 80 OG SER 10 8.528 32.512 4.537 1.00 0.00 ATOM 82 N SER 11 7.938 32.225 7.388 1.00 0.00 ATOM 83 CA SER 11 8.670 31.999 8.617 1.00 0.00 ATOM 84 C SER 11 7.756 31.528 9.733 1.00 0.00 ATOM 85 O SER 11 8.092 30.586 10.448 1.00 0.00 ATOM 86 CB SER 11 9.390 33.281 9.043 1.00 0.00 ATOM 87 OG SER 11 10.393 33.614 8.094 1.00 0.00 ATOM 89 N TYR 12 6.611 32.252 9.788 1.00 0.00 ATOM 90 CA TYR 12 5.649 31.916 10.826 1.00 0.00 ATOM 91 C TYR 12 5.115 30.481 10.689 1.00 0.00 ATOM 92 O TYR 12 5.050 29.750 11.675 1.00 0.00 ATOM 93 CB TYR 12 4.485 32.913 10.790 1.00 0.00 ATOM 94 CG TYR 12 3.402 32.565 11.791 1.00 0.00 ATOM 95 CD1 TYR 12 3.514 32.964 13.124 1.00 0.00 ATOM 96 CD2 TYR 12 2.278 31.841 11.388 1.00 0.00 ATOM 97 CE1 TYR 12 2.515 32.643 14.044 1.00 0.00 ATOM 98 CE2 TYR 12 1.277 31.519 12.307 1.00 0.00 ATOM 99 CZ TYR 12 1.400 31.922 13.632 1.00 0.00 ATOM 100 OH TYR 12 0.416 31.606 14.538 1.00 0.00 ATOM 102 N VAL 13 4.739 30.054 9.505 1.00 0.00 ATOM 103 CA VAL 13 4.218 28.753 9.261 1.00 0.00 ATOM 104 C VAL 13 5.350 27.724 9.486 1.00 0.00 ATOM 105 O VAL 13 5.105 26.643 10.017 1.00 0.00 ATOM 106 CB VAL 13 3.650 28.612 7.830 1.00 0.00 ATOM 107 CG1 VAL 13 4.779 28.623 6.802 1.00 0.00 ATOM 108 CG2 VAL 13 2.880 27.299 7.691 1.00 0.00 ATOM 110 N ALA 14 6.610 28.061 9.085 1.00 0.00 ATOM 111 CA ALA 14 7.683 27.096 9.203 1.00 0.00 ATOM 112 C ALA 14 7.826 26.674 10.577 1.00 0.00 ATOM 113 O ALA 14 7.953 25.481 10.845 1.00 0.00 ATOM 114 CB ALA 14 8.990 27.687 8.691 1.00 0.00 ATOM 116 N GLU 15 7.804 27.639 11.481 1.00 0.00 ATOM 117 CA GLU 15 7.963 27.353 12.847 1.00 0.00 ATOM 118 C GLU 15 6.670 26.874 13.548 1.00 0.00 ATOM 119 O GLU 15 6.717 25.967 14.374 1.00 0.00 ATOM 120 CB GLU 15 8.512 28.599 13.549 1.00 0.00 ATOM 121 CG GLU 15 9.932 28.921 13.086 1.00 0.00 ATOM 122 CD GLU 15 10.444 30.200 13.742 1.00 0.00 ATOM 123 OE1 GLU 15 11.586 30.578 13.468 1.00 0.00 ATOM 124 OE2 GLU 15 9.686 30.793 14.520 1.00 0.00 ATOM 126 N THR 16 5.503 27.572 13.130 1.00 0.00 ATOM 127 CA THR 16 4.278 27.297 13.762 1.00 0.00 ATOM 128 C THR 16 3.463 25.993 13.390 1.00 0.00 ATOM 129 O THR 16 2.878 25.360 14.266 1.00 0.00 ATOM 130 CB THR 16 3.399 28.541 13.529 1.00 0.00 ATOM 131 OG1 THR 16 4.040 29.676 14.097 1.00 0.00 ATOM 132 CG2 THR 16 2.025 28.380 14.175 1.00 0.00 ATOM 134 N GLY 17 3.498 25.675 12.038 1.00 0.00 ATOM 135 CA GLY 17 2.641 24.643 11.516 1.00 0.00 ATOM 136 C GLY 17 1.256 25.211 11.216 1.00 0.00 ATOM 137 O GLY 17 1.122 26.405 10.954 1.00 0.00 ATOM 139 N GLN 18 0.190 24.386 11.250 1.00 0.00 ATOM 140 CA GLN 18 -1.145 24.756 10.862 1.00 0.00 ATOM 141 C GLN 18 -1.632 25.700 11.955 1.00 0.00 ATOM 142 O GLN 18 -1.309 25.508 13.125 1.00 0.00 ATOM 143 CB GLN 18 -2.095 23.563 10.736 1.00 0.00 ATOM 144 CG GLN 18 -1.729 22.677 9.546 1.00 0.00 ATOM 145 CD GLN 18 -1.904 23.426 8.230 1.00 0.00 ATOM 146 NE2 GLN 18 -0.863 23.517 7.431 1.00 0.00 ATOM 147 OE1 GLN 18 -2.978 23.926 7.928 1.00 0.00 ATOM 149 N ASN 19 -2.434 26.731 11.530 1.00 0.00 ATOM 150 CA ASN 19 -2.801 27.850 12.353 1.00 0.00 ATOM 151 C ASN 19 -4.013 28.413 11.734 1.00 0.00 ATOM 152 O ASN 19 -4.213 28.272 10.530 1.00 0.00 ATOM 153 CB ASN 19 -1.711 28.921 12.448 1.00 0.00 ATOM 154 CG ASN 19 -1.417 29.532 11.082 1.00 0.00 ATOM 155 ND2 ASN 19 -1.961 30.699 10.803 1.00 0.00 ATOM 156 OD1 ASN 19 -0.699 28.959 10.276 1.00 0.00 ATOM 158 N TRP 20 -4.911 29.094 12.485 1.00 0.00 ATOM 159 CA TRP 20 -5.951 29.927 11.914 1.00 0.00 ATOM 160 C TRP 20 -5.390 31.295 11.491 1.00 0.00 ATOM 161 O TRP 20 -4.482 31.816 12.136 1.00 0.00 ATOM 162 CB TRP 20 -7.095 30.116 12.915 1.00 0.00 ATOM 163 CG TRP 20 -7.838 28.835 13.168 1.00 0.00 ATOM 164 CD1 TRP 20 -8.898 28.375 12.459 1.00 0.00 ATOM 165 CD2 TRP 20 -7.581 27.859 14.192 1.00 0.00 ATOM 166 NE1 TRP 20 -9.311 27.171 12.983 1.00 0.00 ATOM 167 CE2 TRP 20 -8.522 26.821 14.054 1.00 0.00 ATOM 168 CE3 TRP 20 -6.630 27.777 15.215 1.00 0.00 ATOM 169 CZ2 TRP 20 -8.531 25.720 14.907 1.00 0.00 ATOM 170 CZ3 TRP 20 -6.639 26.675 16.069 1.00 0.00 ATOM 171 CH2 TRP 20 -7.581 25.654 15.917 1.00 0.00 ATOM 173 N ALA 21 -5.935 31.893 10.401 1.00 0.00 ATOM 174 CA ALA 21 -5.363 33.123 9.818 1.00 0.00 ATOM 175 C ALA 21 -5.518 34.216 10.904 1.00 0.00 ATOM 176 O ALA 21 -4.620 35.036 11.086 1.00 0.00 ATOM 177 CB ALA 21 -6.063 33.552 8.535 1.00 0.00 ATOM 179 N SER 22 -6.717 34.180 11.630 1.00 0.00 ATOM 180 CA SER 22 -6.991 35.189 12.609 1.00 0.00 ATOM 181 C SER 22 -5.970 35.087 13.774 1.00 0.00 ATOM 182 O SER 22 -5.514 36.108 14.283 1.00 0.00 ATOM 183 CB SER 22 -8.414 35.052 13.152 1.00 0.00 ATOM 184 OG SER 22 -8.547 33.833 13.868 1.00 0.00 ATOM 186 N LEU 23 -5.679 33.873 14.107 1.00 0.00 ATOM 187 CA LEU 23 -4.656 33.592 15.151 1.00 0.00 ATOM 188 C LEU 23 -3.265 34.049 14.768 1.00 0.00 ATOM 189 O LEU 23 -2.548 34.602 15.599 1.00 0.00 ATOM 190 CB LEU 23 -4.650 32.090 15.449 1.00 0.00 ATOM 191 CG LEU 23 -3.652 31.705 16.547 1.00 0.00 ATOM 192 CD1 LEU 23 -4.031 32.379 17.864 1.00 0.00 ATOM 193 CD2 LEU 23 -3.650 30.191 16.753 1.00 0.00 ATOM 195 N ALA 24 -2.919 33.812 13.512 1.00 0.00 ATOM 196 CA ALA 24 -1.606 34.265 13.004 1.00 0.00 ATOM 197 C ALA 24 -1.506 35.752 13.043 1.00 0.00 ATOM 198 O ALA 24 -0.471 36.291 13.429 1.00 0.00 ATOM 199 CB ALA 24 -1.387 33.758 11.584 1.00 0.00 ATOM 201 N ALA 25 -2.671 36.446 12.618 1.00 0.00 ATOM 202 CA ALA 25 -2.646 37.895 12.604 1.00 0.00 ATOM 203 C ALA 25 -2.370 38.345 13.957 1.00 0.00 ATOM 204 O ALA 25 -1.519 39.209 14.159 1.00 0.00 ATOM 205 CB ALA 25 -3.963 38.481 12.110 1.00 0.00 ATOM 207 N ASN 26 -3.016 37.839 14.987 1.00 0.00 ATOM 208 CA ASN 26 -2.788 38.288 16.290 1.00 0.00 ATOM 209 C ASN 26 -1.416 38.081 16.852 1.00 0.00 ATOM 210 O ASN 26 -0.851 38.995 17.450 1.00 0.00 ATOM 211 CB ASN 26 -3.832 37.618 17.189 1.00 0.00 ATOM 212 CG ASN 26 -5.222 38.196 16.947 1.00 0.00 ATOM 213 ND2 ASN 26 -6.259 37.427 17.207 1.00 0.00 ATOM 214 OD1 ASN 26 -5.366 39.335 16.527 1.00 0.00 ATOM 216 N GLU 27 -0.939 36.913 16.639 1.00 0.00 ATOM 217 CA GLU 27 0.407 36.588 17.165 1.00 0.00 ATOM 218 C GLU 27 1.447 37.400 16.436 1.00 0.00 ATOM 219 O GLU 27 2.392 37.886 17.052 1.00 0.00 ATOM 220 CB GLU 27 0.710 35.093 17.020 1.00 0.00 ATOM 221 CG GLU 27 -0.186 34.250 17.927 1.00 0.00 ATOM 222 CD GLU 27 0.058 32.761 17.706 1.00 0.00 ATOM 223 OE1 GLU 27 -0.592 31.959 18.380 1.00 0.00 ATOM 224 OE2 GLU 27 0.897 32.435 16.858 1.00 0.00 ATOM 226 N LEU 28 1.327 37.585 15.147 1.00 0.00 ATOM 227 CA LEU 28 2.289 38.363 14.372 1.00 0.00 ATOM 228 C LEU 28 2.261 39.869 14.453 1.00 0.00 ATOM 229 O LEU 28 3.175 40.530 13.963 1.00 0.00 ATOM 230 CB LEU 28 2.107 37.913 12.920 1.00 0.00 ATOM 231 CG LEU 28 2.516 36.453 12.694 1.00 0.00 ATOM 232 CD1 LEU 28 2.189 36.028 11.264 1.00 0.00 ATOM 233 CD2 LEU 28 4.017 36.283 12.925 1.00 0.00 ATOM 235 N ARG 29 1.147 40.434 15.119 1.00 0.00 ATOM 236 CA ARG 29 1.024 41.805 15.388 1.00 0.00 ATOM 237 C ARG 29 0.889 42.499 13.997 1.00 0.00 ATOM 238 O ARG 29 1.588 43.471 13.723 1.00 0.00 ATOM 239 CB ARG 29 2.225 42.380 16.144 1.00 0.00 ATOM 240 CG ARG 29 2.343 41.786 17.549 1.00 0.00 ATOM 241 CD ARG 29 3.525 42.400 18.297 1.00 0.00 ATOM 242 NE ARG 29 3.625 41.803 19.646 1.00 0.00 ATOM 243 CZ ARG 29 2.936 42.264 20.675 1.00 0.00 ATOM 244 NH1 ARG 29 3.056 41.703 21.861 1.00 0.00 ATOM 245 NH2 ARG 29 2.127 43.289 20.514 1.00 0.00 ATOM 247 N VAL 30 -0.042 41.938 13.178 1.00 0.00 ATOM 248 CA VAL 30 -0.203 42.349 11.802 1.00 0.00 ATOM 249 C VAL 30 -1.754 42.475 11.496 1.00 0.00 ATOM 250 O VAL 30 -2.570 41.880 12.196 1.00 0.00 ATOM 251 CB VAL 30 0.453 41.357 10.816 1.00 0.00 ATOM 252 CG1 VAL 30 1.959 41.270 11.066 1.00 0.00 ATOM 253 CG2 VAL 30 -0.148 39.963 10.986 1.00 0.00 ATOM 255 N THR 31 -2.069 43.262 10.431 1.00 0.00 ATOM 256 CA THR 31 -3.542 43.397 10.133 1.00 0.00 ATOM 257 C THR 31 -4.314 42.090 9.677 1.00 0.00 ATOM 258 O THR 31 -3.692 41.140 9.206 1.00 0.00 ATOM 259 CB THR 31 -3.697 44.490 9.058 1.00 0.00 ATOM 260 OG1 THR 31 -2.997 44.094 7.887 1.00 0.00 ATOM 261 CG2 THR 31 -3.131 45.824 9.539 1.00 0.00 ATOM 263 N GLU 32 -5.556 41.973 9.768 1.00 0.00 ATOM 264 CA GLU 32 -6.379 40.881 9.329 1.00 0.00 ATOM 265 C GLU 32 -6.254 40.836 7.751 1.00 0.00 ATOM 266 O GLU 32 -6.245 39.755 7.164 1.00 0.00 ATOM 267 CB GLU 32 -7.846 41.041 9.735 1.00 0.00 ATOM 268 CG GLU 32 -8.030 40.875 11.244 1.00 0.00 ATOM 269 CD GLU 32 -9.478 41.129 11.650 1.00 0.00 ATOM 270 OE1 GLU 32 -9.799 40.920 12.823 1.00 0.00 ATOM 271 OE2 GLU 32 -10.258 41.534 10.780 1.00 0.00 ATOM 273 N ARG 33 -6.157 42.043 7.156 1.00 0.00 ATOM 274 CA ARG 33 -6.441 42.410 5.702 1.00 0.00 ATOM 275 C ARG 33 -5.247 41.812 4.936 1.00 0.00 ATOM 276 O ARG 33 -4.284 41.361 5.551 1.00 0.00 ATOM 277 CB ARG 33 -6.530 43.916 5.441 1.00 0.00 ATOM 278 CG ARG 33 -7.741 44.538 6.136 1.00 0.00 ATOM 279 CD ARG 33 -9.036 43.894 5.642 1.00 0.00 ATOM 280 NE ARG 33 -10.197 44.567 6.261 1.00 0.00 ATOM 281 CZ ARG 33 -11.441 44.200 6.013 1.00 0.00 ATOM 282 NH1 ARG 33 -12.449 44.828 6.586 1.00 0.00 ATOM 283 NH2 ARG 33 -11.677 43.202 5.188 1.00 0.00 ATOM 284 N PRO 34 -5.279 41.800 3.544 1.00 0.00 ATOM 285 CA PRO 34 -5.216 40.486 2.763 1.00 0.00 ATOM 286 C PRO 34 -4.078 39.718 3.409 1.00 0.00 ATOM 287 O PRO 34 -2.975 40.244 3.538 1.00 0.00 ATOM 288 CB PRO 34 -4.894 40.832 1.308 1.00 0.00 ATOM 289 CG PRO 34 -5.461 42.218 1.090 1.00 0.00 ATOM 290 CD PRO 34 -6.834 42.226 1.740 1.00 0.00 ATOM 292 N PHE 35 -4.392 38.471 3.792 1.00 0.00 ATOM 293 CA PHE 35 -3.545 37.587 4.589 1.00 0.00 ATOM 294 C PHE 35 -2.367 36.842 3.951 1.00 0.00 ATOM 295 O PHE 35 -2.452 36.427 2.798 1.00 0.00 ATOM 296 CB PHE 35 -4.513 36.585 5.228 1.00 0.00 ATOM 297 CG PHE 35 -5.410 35.929 4.203 1.00 0.00 ATOM 298 CD1 PHE 35 -4.991 34.782 3.532 1.00 0.00 ATOM 299 CD2 PHE 35 -6.664 36.467 3.922 1.00 0.00 ATOM 300 CE1 PHE 35 -5.819 34.178 2.587 1.00 0.00 ATOM 301 CE2 PHE 35 -7.492 35.864 2.978 1.00 0.00 ATOM 302 CZ PHE 35 -7.069 34.720 2.311 1.00 0.00 ATOM 304 N TRP 36 -1.354 36.696 4.685 1.00 0.00 ATOM 305 CA TRP 36 -0.148 36.094 4.224 1.00 0.00 ATOM 306 C TRP 36 -0.368 34.557 3.748 1.00 0.00 ATOM 307 O TRP 36 0.454 34.018 3.009 1.00 0.00 ATOM 308 CB TRP 36 0.915 36.156 5.325 1.00 0.00 ATOM 309 CG TRP 36 0.454 35.484 6.588 1.00 0.00 ATOM 310 CD1 TRP 36 -0.202 36.080 7.613 1.00 0.00 ATOM 311 CD2 TRP 36 0.614 34.104 6.956 1.00 0.00 ATOM 312 NE1 TRP 36 -0.458 35.150 8.595 1.00 0.00 ATOM 313 CE2 TRP 36 0.031 33.918 8.224 1.00 0.00 ATOM 314 CE3 TRP 36 1.203 33.007 6.317 1.00 0.00 ATOM 315 CZ2 TRP 36 0.025 32.677 8.856 1.00 0.00 ATOM 316 CZ3 TRP 36 1.197 31.764 6.949 1.00 0.00 ATOM 317 CH2 TRP 36 0.614 31.599 8.208 1.00 0.00 ATOM 319 N ILE 37 -1.449 33.980 4.195 1.00 0.00 ATOM 320 CA ILE 37 -1.810 32.559 3.914 1.00 0.00 ATOM 321 C ILE 37 -2.078 32.424 2.437 1.00 0.00 ATOM 322 O ILE 37 -1.707 31.421 1.832 1.00 0.00 ATOM 323 CB ILE 37 -3.043 32.099 4.723 1.00 0.00 ATOM 324 CG1 ILE 37 -2.710 32.042 6.218 1.00 0.00 ATOM 325 CG2 ILE 37 -3.487 30.707 4.271 1.00 0.00 ATOM 326 CD1 ILE 37 -3.961 31.836 7.066 1.00 0.00 ATOM 328 N SER 38 -2.700 33.422 1.898 1.00 0.00 ATOM 329 CA SER 38 -3.019 33.389 0.474 1.00 0.00 ATOM 330 C SER 38 -1.677 33.277 -0.352 1.00 0.00 ATOM 331 O SER 38 -1.552 32.405 -1.210 1.00 0.00 ATOM 332 CB SER 38 -3.790 34.639 0.044 1.00 0.00 ATOM 333 OG SER 38 -2.946 35.779 0.113 1.00 0.00 ATOM 335 N SER 39 -0.710 34.162 -0.060 1.00 0.00 ATOM 336 CA SER 39 0.572 34.221 -0.757 1.00 0.00 ATOM 337 C SER 39 1.341 32.926 -0.463 1.00 0.00 ATOM 338 O SER 39 1.949 32.353 -1.364 1.00 0.00 ATOM 339 CB SER 39 1.402 35.428 -0.319 1.00 0.00 ATOM 340 OG SER 39 1.758 35.304 1.050 1.00 0.00 ATOM 342 N PHE 40 1.255 32.504 0.881 1.00 0.00 ATOM 343 CA PHE 40 2.050 31.296 1.246 1.00 0.00 ATOM 344 C PHE 40 1.538 30.062 0.513 1.00 0.00 ATOM 345 O PHE 40 2.332 29.262 0.024 1.00 0.00 ATOM 346 CB PHE 40 2.000 31.064 2.759 1.00 0.00 ATOM 347 CG PHE 40 2.729 29.804 3.166 1.00 0.00 ATOM 348 CD1 PHE 40 4.116 29.803 3.293 1.00 0.00 ATOM 349 CD2 PHE 40 2.019 28.632 3.414 1.00 0.00 ATOM 350 CE1 PHE 40 4.788 28.640 3.667 1.00 0.00 ATOM 351 CE2 PHE 40 2.689 27.469 3.789 1.00 0.00 ATOM 352 CZ PHE 40 4.072 27.474 3.915 1.00 0.00 ATOM 354 N ILE 41 0.222 29.977 0.468 1.00 0.00 ATOM 355 CA ILE 41 -0.360 28.852 -0.223 1.00 0.00 ATOM 356 C ILE 41 -0.029 28.931 -1.690 1.00 0.00 ATOM 357 O ILE 41 0.373 27.934 -2.286 1.00 0.00 ATOM 358 CB ILE 41 -1.891 28.799 -0.025 1.00 0.00 ATOM 359 CG1 ILE 41 -2.231 28.483 1.436 1.00 0.00 ATOM 360 CG2 ILE 41 -2.506 27.714 -0.912 1.00 0.00 ATOM 361 CD1 ILE 41 -3.727 28.605 1.704 1.00 0.00 ATOM 363 N GLY 42 -0.178 30.107 -2.322 1.00 0.00 ATOM 364 CA GLY 42 0.045 30.190 -3.714 1.00 0.00 ATOM 365 C GLY 42 1.455 29.731 -4.071 1.00 0.00 ATOM 366 O GLY 42 1.648 29.065 -5.085 1.00 0.00 ATOM 368 N ARG 43 2.351 30.126 -3.188 1.00 0.00 ATOM 369 CA ARG 43 3.786 29.660 -3.355 1.00 0.00 ATOM 370 C ARG 43 4.135 28.177 -2.936 1.00 0.00 ATOM 371 O ARG 43 4.902 27.507 -3.625 1.00 0.00 ATOM 372 CB ARG 43 4.658 30.645 -2.572 1.00 0.00 ATOM 373 CG ARG 43 4.701 32.017 -3.245 1.00 0.00 ATOM 374 CD ARG 43 5.690 32.938 -2.531 1.00 0.00 ATOM 375 NE ARG 43 5.741 34.246 -3.219 1.00 0.00 ATOM 376 CZ ARG 43 4.799 35.159 -3.068 1.00 0.00 ATOM 377 NH1 ARG 43 4.882 36.313 -3.701 1.00 0.00 ATOM 378 NH2 ARG 43 3.771 34.916 -2.285 1.00 0.00 ATOM 380 N SER 44 3.522 27.750 -1.801 1.00 0.00 ATOM 381 CA SER 44 3.862 26.374 -1.309 1.00 0.00 ATOM 382 C SER 44 2.941 25.121 -1.646 1.00 0.00 ATOM 383 O SER 44 3.444 24.011 -1.803 1.00 0.00 ATOM 384 CB SER 44 3.996 26.527 0.207 1.00 0.00 ATOM 385 OG SER 44 2.742 26.878 0.774 1.00 0.00 ATOM 387 N LYS 45 1.643 25.376 -1.743 1.00 0.00 ATOM 388 CA LYS 45 0.615 24.299 -1.913 1.00 0.00 ATOM 389 C LYS 45 -0.430 24.752 -2.958 1.00 0.00 ATOM 390 O LYS 45 -1.067 25.790 -2.785 1.00 0.00 ATOM 391 CB LYS 45 -0.074 23.975 -0.584 1.00 0.00 ATOM 392 CG LYS 45 -1.168 22.922 -0.759 1.00 0.00 ATOM 393 CD LYS 45 -1.868 22.641 0.571 1.00 0.00 ATOM 394 CE LYS 45 -2.983 21.613 0.387 1.00 0.00 ATOM 395 NZ LYS 45 -3.664 21.367 1.685 1.00 0.00 TER END