####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS407_5-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_5-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 18 - 38 4.78 14.10 LONGEST_CONTINUOUS_SEGMENT: 21 19 - 39 4.90 14.05 LCS_AVERAGE: 43.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 19 - 30 1.82 15.53 LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 1.58 16.08 LCS_AVERAGE: 24.07 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 20 - 30 0.79 16.37 LCS_AVERAGE: 16.17 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 4 6 14 3 4 4 4 6 8 8 9 9 10 11 13 15 18 21 24 28 29 29 30 LCS_GDT V 3 V 3 4 6 14 3 4 4 4 6 6 7 9 9 10 11 17 19 21 23 26 28 29 29 29 LCS_GDT Q 4 Q 4 4 7 14 3 4 4 7 7 8 8 9 9 12 15 17 19 21 23 26 28 29 29 29 LCS_GDT G 5 G 5 4 7 19 3 4 4 7 7 8 8 9 11 13 15 17 19 21 23 26 28 29 29 29 LCS_GDT P 6 P 6 3 7 19 1 3 4 7 7 8 8 9 11 13 14 16 19 21 23 26 28 29 29 32 LCS_GDT W 7 W 7 3 7 19 1 3 4 7 7 8 8 9 11 13 17 18 20 23 24 26 28 30 31 32 LCS_GDT V 8 V 8 3 11 19 3 3 4 7 8 10 12 12 12 12 15 17 19 21 23 26 28 29 31 32 LCS_GDT G 9 G 9 9 11 19 8 8 9 9 10 10 12 12 12 12 15 17 19 21 24 26 28 30 31 32 LCS_GDT S 10 S 10 9 11 19 8 8 9 9 10 10 12 13 14 15 17 20 23 25 26 27 28 30 31 32 LCS_GDT S 11 S 11 9 11 19 8 8 9 9 10 10 12 13 14 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT Y 12 Y 12 9 11 19 8 8 9 9 10 10 12 12 12 13 17 20 23 25 26 27 28 30 31 32 LCS_GDT V 13 V 13 9 11 19 8 8 9 9 10 10 12 12 14 15 18 20 23 25 26 27 28 30 31 32 LCS_GDT A 14 A 14 9 11 19 8 8 9 9 10 10 12 12 12 14 18 20 23 25 26 27 28 30 31 32 LCS_GDT E 15 E 15 9 11 19 8 8 9 9 10 10 12 12 12 14 16 17 20 22 25 27 28 30 31 32 LCS_GDT T 16 T 16 9 11 19 8 8 9 9 10 10 12 12 12 12 15 17 19 21 23 26 28 29 31 32 LCS_GDT G 17 G 17 9 11 19 3 4 9 9 10 10 12 12 12 12 15 17 19 21 23 26 28 29 31 32 LCS_GDT Q 18 Q 18 4 11 21 3 3 5 7 10 10 12 12 12 14 18 20 23 25 26 27 28 30 31 32 LCS_GDT N 19 N 19 4 12 21 3 3 5 6 7 10 12 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT W 20 W 20 11 12 21 7 10 11 11 11 12 14 15 15 16 17 20 22 25 26 27 28 30 31 32 LCS_GDT A 21 A 21 11 12 21 7 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT S 22 S 22 11 12 21 7 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT L 23 L 23 11 12 21 7 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT A 24 A 24 11 12 21 7 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT A 25 A 25 11 12 21 7 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT N 26 N 26 11 12 21 5 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT E 27 E 27 11 12 21 5 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT L 28 L 28 11 12 21 4 10 11 11 11 12 14 15 15 16 18 20 22 25 26 27 28 30 31 32 LCS_GDT R 29 R 29 11 12 21 3 8 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT V 30 V 30 11 12 21 7 10 11 11 11 12 12 12 14 16 16 18 21 23 26 26 28 30 31 32 LCS_GDT T 31 T 31 4 12 21 3 4 6 8 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT E 32 E 32 4 11 21 3 4 5 7 9 11 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT R 33 R 33 4 11 21 3 4 7 8 9 10 11 13 13 15 17 19 23 25 26 27 28 30 31 32 LCS_GDT P 34 P 34 6 11 21 3 5 6 7 10 11 12 13 15 16 17 20 23 25 26 27 28 29 31 32 LCS_GDT F 35 F 35 6 11 21 3 5 6 8 10 11 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT W 36 W 36 6 11 21 3 5 6 8 10 11 14 15 15 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT I 37 I 37 6 11 21 3 6 7 8 10 11 12 13 13 16 18 20 23 25 26 27 28 30 31 32 LCS_GDT S 38 S 38 6 11 21 5 6 7 8 10 11 12 13 14 15 18 20 23 25 26 27 28 30 31 32 LCS_GDT S 39 S 39 6 11 21 5 6 7 8 10 11 12 13 14 15 17 19 20 23 25 27 28 30 31 32 LCS_GDT F 40 F 40 6 11 15 5 6 7 8 10 11 12 13 13 13 14 16 19 20 21 25 28 30 31 32 LCS_GDT I 41 I 41 6 11 15 5 6 7 8 10 11 12 13 13 13 14 16 17 20 21 22 26 29 31 32 LCS_GDT G 42 G 42 6 11 15 5 6 7 8 10 11 12 13 13 13 14 14 14 17 18 20 22 25 25 27 LCS_GDT R 43 R 43 4 11 15 3 4 4 4 5 11 12 13 13 13 14 14 14 14 14 14 14 15 16 19 LCS_GDT S 44 S 44 4 11 15 3 4 4 8 10 11 12 13 13 13 14 14 14 14 14 14 14 15 16 21 LCS_GDT K 45 K 45 4 6 15 3 4 4 7 8 11 12 12 12 13 14 14 14 14 14 14 14 15 15 15 LCS_AVERAGE LCS_A: 27.89 ( 16.17 24.07 43.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 11 11 11 12 14 15 15 16 18 20 23 25 26 27 28 30 31 32 GDT PERCENT_AT 18.18 22.73 25.00 25.00 25.00 27.27 31.82 34.09 34.09 36.36 40.91 45.45 52.27 56.82 59.09 61.36 63.64 68.18 70.45 72.73 GDT RMS_LOCAL 0.30 0.60 0.79 0.79 0.79 1.58 2.53 2.82 2.82 3.27 4.27 4.45 4.75 4.93 5.10 5.41 5.61 6.05 6.13 6.32 GDT RMS_ALL_AT 20.45 16.68 16.37 16.37 16.37 16.08 16.04 15.42 15.42 16.42 12.36 12.31 12.65 12.80 12.91 12.22 11.95 11.75 11.86 11.79 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 25.038 0 0.641 0.614 27.084 0.000 0.000 - LGA V 3 V 3 25.633 0 0.069 0.195 26.551 0.000 0.000 26.551 LGA Q 4 Q 4 27.072 0 0.038 0.892 29.544 0.000 0.000 26.530 LGA G 5 G 5 28.125 0 0.471 0.471 29.039 0.000 0.000 - LGA P 6 P 6 25.377 0 0.647 0.586 28.488 0.000 0.000 27.858 LGA W 7 W 7 20.047 0 0.293 1.191 22.451 0.000 0.000 20.884 LGA V 8 V 8 18.809 0 0.633 1.359 22.891 0.000 0.000 21.121 LGA G 9 G 9 12.941 0 0.487 0.487 14.996 0.000 0.000 - LGA S 10 S 10 9.860 0 0.183 0.169 11.176 0.000 0.000 10.163 LGA S 11 S 11 11.290 0 0.047 0.043 12.739 0.000 0.000 12.610 LGA Y 12 Y 12 13.786 0 0.029 1.375 14.714 0.000 0.000 13.780 LGA V 13 V 13 11.559 0 0.056 0.281 13.134 0.000 0.000 11.001 LGA A 14 A 14 12.758 0 0.037 0.039 15.581 0.000 0.000 - LGA E 15 E 15 16.590 0 0.026 1.412 20.865 0.000 0.000 20.865 LGA T 16 T 16 17.760 0 0.131 1.028 18.597 0.000 0.000 16.928 LGA G 17 G 17 16.045 0 0.281 0.281 16.053 0.000 0.000 - LGA Q 18 Q 18 10.260 0 0.628 0.950 14.554 0.000 0.000 11.473 LGA N 19 N 19 4.668 0 0.074 1.093 6.641 11.818 9.318 3.806 LGA W 20 W 20 3.305 0 0.626 1.140 13.838 20.455 5.844 13.650 LGA A 21 A 21 2.764 0 0.048 0.046 3.896 38.636 33.091 - LGA S 22 S 22 2.643 0 0.027 0.647 3.939 35.909 27.576 3.939 LGA L 23 L 23 2.933 0 0.042 0.336 7.568 35.455 18.409 6.500 LGA A 24 A 24 2.634 0 0.022 0.024 3.557 38.636 33.091 - LGA A 25 A 25 2.281 0 0.027 0.027 2.917 44.545 41.091 - LGA N 26 N 26 1.987 0 0.021 0.907 6.224 58.182 32.727 5.783 LGA E 27 E 27 1.368 0 0.110 0.908 6.836 69.545 38.182 6.836 LGA L 28 L 28 1.682 0 0.283 0.888 4.497 51.364 33.409 4.497 LGA R 29 R 29 1.663 0 0.586 1.442 10.626 31.818 16.694 9.309 LGA V 30 V 30 6.039 0 0.626 0.878 10.466 3.182 1.818 10.466 LGA T 31 T 31 2.530 0 0.695 0.575 4.516 19.091 18.961 2.889 LGA E 32 E 32 3.280 0 0.072 1.114 4.226 14.091 27.879 1.908 LGA R 33 R 33 7.108 0 0.664 1.273 11.501 0.000 0.000 9.564 LGA P 34 P 34 7.106 0 0.526 0.583 11.517 5.000 2.857 11.358 LGA F 35 F 35 3.284 0 0.024 1.302 10.205 13.182 4.959 10.205 LGA W 36 W 36 3.382 0 0.143 0.681 11.477 10.455 2.987 10.192 LGA I 37 I 37 6.574 0 0.114 0.973 10.270 0.455 0.227 8.056 LGA S 38 S 38 10.871 0 0.085 0.645 14.428 0.000 0.000 11.727 LGA S 39 S 39 12.323 0 0.127 0.218 15.043 0.000 0.000 9.071 LGA F 40 F 40 13.848 0 0.053 1.542 17.891 0.000 0.000 14.311 LGA I 41 I 41 18.602 0 0.056 1.282 20.678 0.000 0.000 18.635 LGA G 42 G 42 24.714 0 0.554 0.554 25.569 0.000 0.000 - LGA R 43 R 43 27.451 0 0.512 1.098 29.375 0.000 0.000 29.085 LGA S 44 S 44 28.990 0 0.098 0.637 31.310 0.000 0.000 27.770 LGA K 45 K 45 33.340 0 0.237 0.698 40.107 0.000 0.000 40.107 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 10.264 10.158 11.479 11.405 7.935 3.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 15 2.82 35.795 32.024 0.515 LGA_LOCAL RMSD: 2.815 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.421 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 10.264 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.435463 * X + -0.564303 * Y + 0.701380 * Z + -2.039570 Y_new = 0.838866 * X + 0.537057 * Y + -0.088728 * Z + 36.983055 Z_new = -0.326611 * X + 0.627002 * Y + 0.707244 * Z + -6.363517 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.091978 0.332716 0.725330 [DEG: 62.5658 19.0632 41.5584 ] ZXZ: 1.444959 0.785204 -0.480235 [DEG: 82.7901 44.9889 -27.5154 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS407_5-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_5-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 15 2.82 32.024 10.26 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS407_5-D1 PFRMAT TS TARGET T0953s2 MODEL 5 PARENT N/A ATOM 12 N ALA 2 -11.877 26.854 15.135 1.00 5.95 N ATOM 14 CA ALA 2 -11.972 25.573 15.856 1.00 5.95 C ATOM 15 CB ALA 2 -12.880 25.720 17.075 1.00 5.95 C ATOM 16 C ALA 2 -12.489 24.453 14.944 1.00 5.95 C ATOM 17 O ALA 2 -12.073 23.297 15.087 1.00 5.95 O ATOM 18 N VAL 3 -13.390 24.811 14.017 1.00 7.13 N ATOM 20 CA VAL 3 -14.005 23.879 13.047 1.00 7.13 C ATOM 21 CB VAL 3 -15.585 24.024 13.003 1.00 7.13 C ATOM 22 CG1 VAL 3 -16.239 22.790 12.354 1.00 7.13 C ATOM 23 CG2 VAL 3 -16.155 24.225 14.409 1.00 7.13 C ATOM 24 C VAL 3 -13.402 24.153 11.647 1.00 7.13 C ATOM 25 O VAL 3 -13.051 25.300 11.337 1.00 7.13 O ATOM 26 N GLN 4 -13.271 23.090 10.840 1.00 7.56 N ATOM 28 CA GLN 4 -12.720 23.151 9.472 1.00 7.56 C ATOM 29 CB GLN 4 -11.624 22.091 9.279 1.00 7.56 C ATOM 30 CG GLN 4 -10.343 22.342 10.069 1.00 7.56 C ATOM 31 CD GLN 4 -9.298 21.266 9.844 1.00 7.56 C ATOM 32 OE1 GLN 4 -8.459 21.378 8.950 1.00 7.56 O ATOM 33 NE2 GLN 4 -9.344 20.216 10.656 1.00 7.56 N ATOM 36 C GLN 4 -13.815 22.961 8.415 1.00 7.56 C ATOM 37 O GLN 4 -14.794 22.248 8.657 1.00 7.56 O ATOM 38 N GLY 5 -13.636 23.608 7.258 1.00 5.67 N ATOM 40 CA GLY 5 -14.596 23.518 6.166 1.00 5.67 C ATOM 41 C GLY 5 -14.152 24.289 4.927 1.00 5.67 C ATOM 42 O GLY 5 -13.753 23.637 3.955 1.00 5.67 O ATOM 43 N PRO 6 -14.200 25.657 4.907 1.00 3.90 N ATOM 44 CD PRO 6 -14.813 26.538 5.928 1.00 3.90 C ATOM 45 CA PRO 6 -13.785 26.473 3.746 1.00 3.90 C ATOM 46 CB PRO 6 -14.132 27.899 4.189 1.00 3.90 C ATOM 47 CG PRO 6 -15.290 27.702 5.099 1.00 3.90 C ATOM 48 C PRO 6 -12.296 26.353 3.344 1.00 3.90 C ATOM 49 O PRO 6 -11.410 26.424 4.206 1.00 3.90 O ATOM 50 N TRP 7 -12.052 26.161 2.033 1.00 3.88 N ATOM 52 CA TRP 7 -10.720 26.005 1.383 1.00 3.88 C ATOM 53 CB TRP 7 -10.035 27.378 1.145 1.00 3.88 C ATOM 54 CG TRP 7 -10.673 28.267 0.048 1.00 3.88 C ATOM 55 CD2 TRP 7 -11.813 29.151 0.176 1.00 3.88 C ATOM 56 CE2 TRP 7 -12.001 29.775 -1.089 1.00 3.88 C ATOM 57 CE3 TRP 7 -12.693 29.476 1.234 1.00 3.88 C ATOM 58 CD1 TRP 7 -10.242 28.399 -1.252 1.00 3.88 C ATOM 59 NE1 TRP 7 -11.031 29.296 -1.930 1.00 3.88 N ATOM 61 CZ2 TRP 7 -13.036 30.711 -1.333 1.00 3.88 C ATOM 62 CZ3 TRP 7 -13.731 30.412 0.993 1.00 3.88 C ATOM 63 CH2 TRP 7 -13.886 31.015 -0.286 1.00 3.88 C ATOM 64 C TRP 7 -9.731 24.999 2.010 1.00 3.88 C ATOM 65 O TRP 7 -9.455 25.058 3.215 1.00 3.88 O ATOM 66 N VAL 8 -9.219 24.082 1.176 1.00 3.85 N ATOM 68 CA VAL 8 -8.270 23.022 1.580 1.00 3.85 C ATOM 69 CB VAL 8 -8.862 21.574 1.337 1.00 3.85 C ATOM 70 CG1 VAL 8 -9.879 21.243 2.418 1.00 3.85 C ATOM 71 CG2 VAL 8 -9.522 21.446 -0.057 1.00 3.85 C ATOM 72 C VAL 8 -6.873 23.135 0.940 1.00 3.85 C ATOM 73 O VAL 8 -6.739 23.665 -0.169 1.00 3.85 O ATOM 74 N GLY 9 -5.852 22.646 1.656 1.00 3.68 N ATOM 76 CA GLY 9 -4.478 22.665 1.170 1.00 3.68 C ATOM 77 C GLY 9 -3.531 23.582 1.926 1.00 3.68 C ATOM 78 O GLY 9 -2.698 24.245 1.299 1.00 3.68 O ATOM 79 N SER 10 -3.647 23.587 3.265 1.00 3.55 N ATOM 81 CA SER 10 -2.845 24.390 4.226 1.00 3.55 C ATOM 82 CB SER 10 -1.484 23.724 4.524 1.00 3.55 C ATOM 83 OG SER 10 -0.731 23.538 3.337 1.00 3.55 O ATOM 85 C SER 10 -2.660 25.899 3.935 1.00 3.55 C ATOM 86 O SER 10 -3.109 26.735 4.730 1.00 3.55 O ATOM 87 N SER 11 -2.006 26.223 2.808 1.00 3.48 N ATOM 89 CA SER 11 -1.737 27.604 2.350 1.00 3.48 C ATOM 90 OG SER 11 -0.286 28.896 0.859 1.00 3.48 O ATOM 92 C SER 11 -3.024 28.339 1.925 1.00 3.48 C ATOM 93 O SER 11 -3.157 29.543 2.165 1.00 3.48 O ATOM 94 CB SER 11 -0.728 27.589 1.192 1.00 3.48 C ATOM 95 N TYR 12 -3.954 27.591 1.314 1.00 3.20 N ATOM 97 CA TYR 12 -5.261 28.091 0.832 1.00 3.20 C ATOM 98 CB TYR 12 -5.961 27.025 -0.035 1.00 3.20 C ATOM 99 CG TYR 12 -5.191 26.528 -1.267 1.00 3.20 C ATOM 100 CD1 TYR 12 -4.304 25.427 -1.179 1.00 3.20 C ATOM 101 CE1 TYR 12 -3.614 24.940 -2.322 1.00 3.20 C ATOM 102 CD2 TYR 12 -5.369 27.133 -2.536 1.00 3.20 C ATOM 103 CE2 TYR 12 -4.681 26.651 -3.684 1.00 3.20 C ATOM 104 CZ TYR 12 -3.810 25.558 -3.566 1.00 3.20 C ATOM 105 OH TYR 12 -3.145 25.086 -4.675 1.00 3.20 O ATOM 107 C TYR 12 -6.186 28.500 1.987 1.00 3.20 C ATOM 108 O TYR 12 -6.944 29.471 1.864 1.00 3.20 O ATOM 109 N VAL 13 -6.104 27.748 3.098 1.00 3.07 N ATOM 111 CA VAL 13 -6.889 27.980 4.331 1.00 3.07 C ATOM 112 CB VAL 13 -6.720 26.807 5.378 1.00 3.07 C ATOM 113 CG1 VAL 13 -7.871 26.807 6.399 1.00 3.07 C ATOM 114 CG2 VAL 13 -6.656 25.448 4.677 1.00 3.07 C ATOM 115 C VAL 13 -6.384 29.319 4.924 1.00 3.07 C ATOM 116 O VAL 13 -7.168 30.090 5.493 1.00 3.07 O ATOM 117 N ALA 14 -5.068 29.551 4.792 1.00 2.93 N ATOM 119 CA ALA 14 -4.374 30.769 5.246 1.00 2.93 C ATOM 120 CB ALA 14 -2.865 30.536 5.272 1.00 2.93 C ATOM 121 C ALA 14 -4.711 31.998 4.377 1.00 2.93 C ATOM 122 O ALA 14 -5.038 33.066 4.904 1.00 2.93 O ATOM 123 N GLU 15 -4.690 31.800 3.051 1.00 2.69 N ATOM 125 CA GLU 15 -4.971 32.836 2.035 1.00 2.69 C ATOM 126 CB GLU 15 -4.624 32.324 0.631 1.00 2.69 C ATOM 127 CG GLU 15 -3.129 32.206 0.351 1.00 2.69 C ATOM 128 CD GLU 15 -2.835 31.673 -1.038 1.00 2.69 C ATOM 129 OE1 GLU 15 -2.739 32.488 -1.980 1.00 2.69 O ATOM 130 OE2 GLU 15 -2.698 30.440 -1.188 1.00 2.69 O ATOM 131 C GLU 15 -6.411 33.372 2.052 1.00 2.69 C ATOM 132 O GLU 15 -6.626 34.566 1.811 1.00 2.69 O ATOM 133 N THR 16 -7.380 32.488 2.342 1.00 2.39 N ATOM 135 CA THR 16 -8.815 32.841 2.404 1.00 2.39 C ATOM 136 CB THR 16 -9.751 31.567 2.326 1.00 2.39 C ATOM 137 OG1 THR 16 -11.127 31.969 2.334 1.00 2.39 O ATOM 139 CG2 THR 16 -9.498 30.578 3.474 1.00 2.39 C ATOM 140 C THR 16 -9.191 33.779 3.576 1.00 2.39 C ATOM 141 O THR 16 -9.982 34.708 3.385 1.00 2.39 O ATOM 142 N GLY 17 -8.620 33.534 4.762 1.00 2.39 N ATOM 144 CA GLY 17 -8.905 34.388 5.909 1.00 2.39 C ATOM 145 C GLY 17 -8.753 33.871 7.331 1.00 2.39 C ATOM 146 O GLY 17 -8.067 34.512 8.129 1.00 2.39 O ATOM 147 N GLN 18 -9.362 32.718 7.637 1.00 2.56 N ATOM 149 CA GLN 18 -9.365 32.112 8.987 1.00 2.56 C ATOM 150 CB GLN 18 -10.467 31.046 9.081 1.00 2.56 C ATOM 151 CG GLN 18 -11.892 31.593 9.058 1.00 2.56 C ATOM 152 CD GLN 18 -12.938 30.499 9.160 1.00 2.56 C ATOM 153 OE1 GLN 18 -13.373 30.141 10.254 1.00 2.56 O ATOM 154 NE2 GLN 18 -13.349 29.963 8.016 1.00 2.56 N ATOM 157 C GLN 18 -8.072 31.555 9.620 1.00 2.56 C ATOM 158 O GLN 18 -7.779 31.880 10.779 1.00 2.56 O ATOM 159 N ASN 19 -7.302 30.752 8.870 1.00 2.56 N ATOM 161 CA ASN 19 -6.052 30.128 9.362 1.00 2.56 C ATOM 162 CB ASN 19 -5.619 28.983 8.427 1.00 2.56 C ATOM 163 CG ASN 19 -4.969 27.814 9.171 1.00 2.56 C ATOM 164 OD1 ASN 19 -3.751 27.778 9.353 1.00 2.56 O ATOM 165 ND2 ASN 19 -5.784 26.848 9.587 1.00 2.56 N ATOM 168 C ASN 19 -4.882 31.106 9.611 1.00 2.56 C ATOM 169 O ASN 19 -4.249 31.042 10.672 1.00 2.56 O ATOM 170 N TRP 20 -4.634 32.019 8.658 1.00 2.47 N ATOM 172 CA TRP 20 -3.556 33.029 8.742 1.00 2.47 C ATOM 173 CB TRP 20 -3.371 33.746 7.383 1.00 2.47 C ATOM 174 CG TRP 20 -1.974 34.371 7.106 1.00 2.47 C ATOM 175 CD2 TRP 20 -1.481 35.660 7.541 1.00 2.47 C ATOM 176 CE2 TRP 20 -0.166 35.803 7.016 1.00 2.47 C ATOM 177 CE3 TRP 20 -2.021 36.707 8.323 1.00 2.47 C ATOM 178 CD1 TRP 20 -0.960 33.815 6.362 1.00 2.47 C ATOM 179 NE1 TRP 20 0.117 34.666 6.307 1.00 2.47 N ATOM 181 CZ2 TRP 20 0.627 36.954 7.246 1.00 2.47 C ATOM 182 CZ3 TRP 20 -1.231 37.862 8.554 1.00 2.47 C ATOM 183 CH2 TRP 20 0.081 37.969 8.012 1.00 2.47 C ATOM 184 C TRP 20 -3.859 34.054 9.853 1.00 2.47 C ATOM 185 O TRP 20 -2.944 34.493 10.559 1.00 2.47 O ATOM 186 N ALA 21 -5.148 34.399 9.998 1.00 2.60 N ATOM 188 CA ALA 21 -5.652 35.350 11.009 1.00 2.60 C ATOM 189 CB ALA 21 -7.091 35.728 10.703 1.00 2.60 C ATOM 190 C ALA 21 -5.542 34.797 12.438 1.00 2.60 C ATOM 191 O ALA 21 -5.152 35.528 13.356 1.00 2.60 O ATOM 192 N SER 22 -5.865 33.504 12.599 1.00 3.15 N ATOM 194 CA SER 22 -5.816 32.780 13.887 1.00 3.15 C ATOM 195 CB SER 22 -6.525 31.423 13.761 1.00 3.15 C ATOM 196 OG SER 22 -6.673 30.788 15.021 1.00 3.15 O ATOM 198 C SER 22 -4.368 32.589 14.381 1.00 3.15 C ATOM 199 O SER 22 -4.086 32.808 15.566 1.00 3.15 O ATOM 200 N LEU 23 -3.467 32.211 13.460 1.00 3.53 N ATOM 202 CA LEU 23 -2.032 31.993 13.741 1.00 3.53 C ATOM 203 CB LEU 23 -1.341 31.265 12.568 1.00 3.53 C ATOM 204 CG LEU 23 -1.590 29.776 12.254 1.00 3.53 C ATOM 205 CD1 LEU 23 -1.446 29.562 10.757 1.00 3.53 C ATOM 206 CD2 LEU 23 -0.640 28.834 13.019 1.00 3.53 C ATOM 207 C LEU 23 -1.281 33.297 14.067 1.00 3.53 C ATOM 208 O LEU 23 -0.471 33.325 14.999 1.00 3.53 O ATOM 209 N ALA 24 -1.585 34.365 13.313 1.00 3.64 N ATOM 211 CA ALA 24 -0.984 35.705 13.480 1.00 3.64 C ATOM 212 CB ALA 24 -1.326 36.589 12.288 1.00 3.64 C ATOM 213 C ALA 24 -1.424 36.382 14.790 1.00 3.64 C ATOM 214 O ALA 24 -0.597 36.980 15.487 1.00 3.64 O ATOM 215 N ALA 25 -2.718 36.245 15.120 1.00 3.63 N ATOM 217 CA ALA 25 -3.331 36.808 16.340 1.00 3.63 C ATOM 218 CB ALA 25 -4.850 36.709 16.262 1.00 3.63 C ATOM 219 C ALA 25 -2.817 36.115 17.612 1.00 3.63 C ATOM 220 O ALA 25 -2.531 36.785 18.607 1.00 3.63 O ATOM 221 N ASN 26 -2.679 34.782 17.546 1.00 3.81 N ATOM 223 CA ASN 26 -2.190 33.937 18.655 1.00 3.81 C ATOM 224 CB ASN 26 -2.455 32.450 18.344 1.00 3.81 C ATOM 225 CG ASN 26 -2.677 31.604 19.600 1.00 3.81 C ATOM 226 OD1 ASN 26 -3.807 31.441 20.063 1.00 3.81 O ATOM 227 ND2 ASN 26 -1.596 31.049 20.141 1.00 3.81 N ATOM 230 C ASN 26 -0.688 34.173 18.943 1.00 3.81 C ATOM 231 O ASN 26 -0.289 34.245 20.112 1.00 3.81 O ATOM 232 N GLU 27 0.117 34.287 17.875 1.00 3.75 N ATOM 234 CA GLU 27 1.576 34.514 17.951 1.00 3.75 C ATOM 235 CG GLU 27 2.382 32.703 16.312 1.00 3.75 C ATOM 236 CD GLU 27 3.047 32.431 14.975 1.00 3.75 C ATOM 237 OE1 GLU 27 2.326 32.329 13.960 1.00 3.75 O ATOM 238 OE2 GLU 27 4.290 32.315 14.939 1.00 3.75 O ATOM 239 C GLU 27 2.037 35.901 18.438 1.00 3.75 C ATOM 240 O GLU 27 2.911 35.979 19.309 1.00 3.75 O ATOM 241 CB GLU 27 2.243 34.194 16.609 1.00 3.75 C ATOM 242 N LEU 28 1.456 36.975 17.881 1.00 3.82 N ATOM 244 CA LEU 28 1.792 38.369 18.242 1.00 3.82 C ATOM 245 CB LEU 28 1.262 39.352 17.164 1.00 3.82 C ATOM 246 CG LEU 28 1.849 39.703 15.763 1.00 3.82 C ATOM 247 CD1 LEU 28 3.116 40.569 15.865 1.00 3.82 C ATOM 248 CD2 LEU 28 2.083 38.484 14.850 1.00 3.82 C ATOM 249 C LEU 28 1.326 38.819 19.639 1.00 3.82 C ATOM 250 O LEU 28 2.128 39.359 20.409 1.00 3.82 O ATOM 251 N ARG 29 0.045 38.564 19.951 1.00 4.09 N ATOM 253 CA ARG 29 -0.616 38.898 21.235 1.00 4.09 C ATOM 254 CB ARG 29 -0.945 40.405 21.344 1.00 4.09 C ATOM 255 CG ARG 29 0.144 41.264 21.988 1.00 4.09 C ATOM 256 CD ARG 29 -0.250 42.739 22.062 1.00 4.09 C ATOM 257 NE ARG 29 -1.332 42.994 23.018 1.00 4.09 N ATOM 259 CZ ARG 29 -1.868 44.188 23.271 1.00 4.09 C ATOM 260 NH1 ARG 29 -2.845 44.291 24.162 1.00 4.09 N ATOM 263 NH2 ARG 29 -1.439 45.282 22.647 1.00 4.09 N ATOM 266 C ARG 29 -1.899 38.053 21.378 1.00 4.09 C ATOM 267 O ARG 29 -1.824 36.901 21.823 1.00 4.09 O ATOM 268 N VAL 30 -3.058 38.626 21.005 1.00 4.51 N ATOM 270 CA VAL 30 -4.388 37.978 21.061 1.00 4.51 C ATOM 271 CB VAL 30 -5.190 38.312 22.391 1.00 4.51 C ATOM 272 CG1 VAL 30 -4.693 37.436 23.532 1.00 4.51 C ATOM 273 CG2 VAL 30 -5.062 39.801 22.786 1.00 4.51 C ATOM 274 C VAL 30 -5.244 38.328 19.824 1.00 4.51 C ATOM 275 O VAL 30 -5.866 37.439 19.229 1.00 4.51 O ATOM 276 N THR 31 -5.254 39.620 19.453 1.00 4.68 N ATOM 278 CA THR 31 -6.013 40.162 18.307 1.00 4.68 C ATOM 279 CB THR 31 -6.977 41.312 18.760 1.00 4.68 C ATOM 280 OG1 THR 31 -6.260 42.265 19.555 1.00 4.68 O ATOM 282 CG2 THR 31 -8.146 40.754 19.564 1.00 4.68 C ATOM 283 C THR 31 -5.073 40.679 17.197 1.00 4.68 C ATOM 284 O THR 31 -3.854 40.720 17.395 1.00 4.68 O ATOM 285 N GLU 32 -5.652 41.058 16.040 1.00 5.10 N ATOM 287 CA GLU 32 -4.969 41.595 14.827 1.00 5.10 C ATOM 288 CB GLU 32 -4.266 42.944 15.101 1.00 5.10 C ATOM 289 CG GLU 32 -5.210 44.105 15.404 1.00 5.10 C ATOM 290 CD GLU 32 -4.474 45.405 15.665 1.00 5.10 C ATOM 291 OE1 GLU 32 -4.234 46.160 14.699 1.00 5.10 O ATOM 292 OE2 GLU 32 -4.139 45.676 16.837 1.00 5.10 O ATOM 293 C GLU 32 -4.008 40.635 14.097 1.00 5.10 C ATOM 294 O GLU 32 -3.412 39.755 14.727 1.00 5.10 O ATOM 295 N ARG 33 -3.872 40.830 12.776 1.00 4.42 N ATOM 297 CA ARG 33 -3.006 40.019 11.895 1.00 4.42 C ATOM 298 CB ARG 33 -3.629 39.882 10.495 1.00 4.42 C ATOM 299 CG ARG 33 -4.955 39.132 10.444 1.00 4.42 C ATOM 300 CD ARG 33 -5.497 39.069 9.026 1.00 4.42 C ATOM 301 NE ARG 33 -6.789 38.383 8.957 1.00 4.42 N ATOM 303 CZ ARG 33 -7.476 38.149 7.839 1.00 4.42 C ATOM 304 NH1 ARG 33 -8.640 37.516 7.907 1.00 4.42 N ATOM 307 NH2 ARG 33 -7.017 38.539 6.653 1.00 4.42 N ATOM 310 C ARG 33 -1.532 40.509 11.771 1.00 4.42 C ATOM 311 O ARG 33 -0.635 39.659 11.723 1.00 4.42 O ATOM 312 N PRO 34 -1.252 41.856 11.701 1.00 4.26 N ATOM 313 CD PRO 34 0.194 42.156 11.841 1.00 4.26 C ATOM 314 CA PRO 34 -2.021 43.126 11.706 1.00 4.26 C ATOM 315 CB PRO 34 -0.940 44.187 11.967 1.00 4.26 C ATOM 316 CG PRO 34 0.301 43.585 11.378 1.00 4.26 C ATOM 317 C PRO 34 -2.879 43.436 10.447 1.00 4.26 C ATOM 318 O PRO 34 -4.098 43.606 10.562 1.00 4.26 O ATOM 319 N PHE 35 -2.229 43.501 9.274 1.00 4.01 N ATOM 321 CA PHE 35 -2.878 43.786 7.978 1.00 4.01 C ATOM 322 CB PHE 35 -2.571 45.238 7.511 1.00 4.01 C ATOM 323 CG PHE 35 -3.132 46.335 8.416 1.00 4.01 C ATOM 324 CD1 PHE 35 -4.421 46.876 8.187 1.00 4.01 C ATOM 325 CD2 PHE 35 -2.359 46.862 9.479 1.00 4.01 C ATOM 326 CE1 PHE 35 -4.933 47.923 9.002 1.00 4.01 C ATOM 327 CE2 PHE 35 -2.858 47.910 10.302 1.00 4.01 C ATOM 328 CZ PHE 35 -4.149 48.442 10.061 1.00 4.01 C ATOM 329 C PHE 35 -2.421 42.802 6.892 1.00 4.01 C ATOM 330 O PHE 35 -1.291 42.302 6.944 1.00 4.01 O ATOM 331 N TRP 36 -3.310 42.534 5.923 1.00 4.13 N ATOM 333 CA TRP 36 -3.058 41.627 4.785 1.00 4.13 C ATOM 334 CB TRP 36 -4.147 40.528 4.723 1.00 4.13 C ATOM 335 CG TRP 36 -3.649 39.091 4.415 1.00 4.13 C ATOM 336 CD2 TRP 36 -3.444 38.485 3.118 1.00 4.13 C ATOM 337 CE2 TRP 36 -3.023 37.144 3.346 1.00 4.13 C ATOM 338 CE3 TRP 36 -3.576 38.941 1.785 1.00 4.13 C ATOM 339 CD1 TRP 36 -3.350 38.114 5.336 1.00 4.13 C ATOM 340 NE1 TRP 36 -2.976 36.954 4.701 1.00 4.13 N ATOM 342 CZ2 TRP 36 -2.728 36.247 2.290 1.00 4.13 C ATOM 343 CZ3 TRP 36 -3.282 38.045 0.727 1.00 4.13 C ATOM 344 CH2 TRP 36 -2.862 36.712 0.994 1.00 4.13 C ATOM 345 C TRP 36 -3.052 42.455 3.484 1.00 4.13 C ATOM 346 O TRP 36 -3.477 43.617 3.497 1.00 4.13 O ATOM 347 N ILE 37 -2.578 41.857 2.379 1.00 4.53 N ATOM 349 CA ILE 37 -2.487 42.512 1.050 1.00 4.53 C ATOM 350 CB ILE 37 -1.556 41.674 0.044 1.00 4.53 C ATOM 351 CG2 ILE 37 -1.301 42.452 -1.285 1.00 4.53 C ATOM 352 CG1 ILE 37 -0.238 41.196 0.723 1.00 4.53 C ATOM 353 CD1 ILE 37 0.868 42.257 1.122 1.00 4.53 C ATOM 354 C ILE 37 -3.877 42.792 0.418 1.00 4.53 C ATOM 355 O ILE 37 -4.115 43.903 -0.069 1.00 4.53 O ATOM 356 N SER 38 -4.765 41.787 0.434 1.00 5.25 N ATOM 358 CA SER 38 -6.133 41.871 -0.116 1.00 5.25 C ATOM 359 CB SER 38 -6.712 40.469 -0.325 1.00 5.25 C ATOM 360 OG SER 38 -5.919 39.716 -1.228 1.00 5.25 O ATOM 362 C SER 38 -7.118 42.743 0.690 1.00 5.25 C ATOM 363 O SER 38 -7.961 43.424 0.102 1.00 5.25 O ATOM 364 N SER 39 -7.023 42.672 2.026 1.00 5.94 N ATOM 366 CA SER 39 -7.865 43.431 2.979 1.00 5.94 C ATOM 367 CB SER 39 -7.759 42.820 4.383 1.00 5.94 C ATOM 368 OG SER 39 -6.419 42.804 4.848 1.00 5.94 O ATOM 370 C SER 39 -7.596 44.951 3.047 1.00 5.94 C ATOM 371 O SER 39 -8.532 45.742 3.224 1.00 5.94 O ATOM 372 N PHE 40 -6.318 45.328 2.893 1.00 6.44 N ATOM 374 CA PHE 40 -5.811 46.718 2.950 1.00 6.44 C ATOM 375 CB PHE 40 -4.258 46.708 2.851 1.00 6.44 C ATOM 376 CG PHE 40 -3.554 47.874 3.559 1.00 6.44 C ATOM 377 CD1 PHE 40 -3.172 47.773 4.918 1.00 6.44 C ATOM 378 CD2 PHE 40 -3.237 49.062 2.856 1.00 6.44 C ATOM 379 CE1 PHE 40 -2.485 48.835 5.569 1.00 6.44 C ATOM 380 CE2 PHE 40 -2.549 50.132 3.494 1.00 6.44 C ATOM 381 CZ PHE 40 -2.173 50.017 4.854 1.00 6.44 C ATOM 382 C PHE 40 -6.401 47.725 1.933 1.00 6.44 C ATOM 383 O PHE 40 -6.555 48.907 2.268 1.00 6.44 O ATOM 384 N ILE 41 -6.711 47.255 0.715 1.00 5.37 N ATOM 386 CA ILE 41 -7.262 48.077 -0.397 1.00 5.37 C ATOM 387 CB ILE 41 -7.577 47.201 -1.693 1.00 5.37 C ATOM 388 CG2 ILE 41 -6.286 46.625 -2.256 1.00 5.37 C ATOM 389 CG1 ILE 41 -8.568 46.055 -1.405 1.00 5.37 C ATOM 390 CD1 ILE 41 -9.934 46.202 -2.079 1.00 5.37 C ATOM 391 C ILE 41 -8.450 49.024 -0.081 1.00 5.37 C ATOM 392 O ILE 41 -9.413 48.624 0.588 1.00 5.37 O ATOM 393 N GLY 42 -8.333 50.272 -0.543 1.00 5.51 N ATOM 395 CA GLY 42 -9.354 51.291 -0.329 1.00 5.51 C ATOM 396 C GLY 42 -8.739 52.674 -0.431 1.00 5.51 C ATOM 397 O GLY 42 -8.001 53.086 0.473 1.00 5.51 O ATOM 398 N ARG 43 -9.046 53.388 -1.528 1.00 5.70 N ATOM 400 CA ARG 43 -8.551 54.754 -1.852 1.00 5.70 C ATOM 401 CB ARG 43 -9.130 55.824 -0.894 1.00 5.70 C ATOM 402 CG ARG 43 -10.631 56.054 -1.027 1.00 5.70 C ATOM 403 CD ARG 43 -11.115 57.118 -0.056 1.00 5.70 C ATOM 404 NE ARG 43 -12.557 57.351 -0.167 1.00 5.70 N ATOM 406 CZ ARG 43 -13.252 58.229 0.558 1.00 5.70 C ATOM 407 NH1 ARG 43 -14.558 58.348 0.363 1.00 5.70 N ATOM 410 NH2 ARG 43 -12.659 58.989 1.474 1.00 5.70 N ATOM 413 C ARG 43 -7.003 54.829 -1.934 1.00 5.70 C ATOM 414 O ARG 43 -6.379 55.784 -1.446 1.00 5.70 O ATOM 415 N SER 44 -6.417 53.811 -2.581 1.00 5.97 N ATOM 417 CA SER 44 -4.961 53.664 -2.754 1.00 5.97 C ATOM 418 CB SER 44 -4.547 52.212 -2.450 1.00 5.97 C ATOM 419 OG SER 44 -3.137 52.067 -2.376 1.00 5.97 O ATOM 421 C SER 44 -4.427 54.080 -4.140 1.00 5.97 C ATOM 422 O SER 44 -5.011 53.723 -5.172 1.00 5.97 O ATOM 423 N LYS 45 -3.332 54.854 -4.127 1.00 6.25 N ATOM 425 CA LYS 45 -2.617 55.340 -5.326 1.00 6.25 C ATOM 426 CG LYS 45 -2.426 57.722 -4.187 1.00 6.25 C ATOM 427 CD LYS 45 -2.544 59.211 -4.468 1.00 6.25 C ATOM 428 CE LYS 45 -2.275 60.031 -3.216 1.00 6.25 C ATOM 429 NZ LYS 45 -2.388 61.493 -3.476 1.00 6.25 N ATOM 433 C LYS 45 -1.166 54.806 -5.224 1.00 6.25 C ATOM 434 O LYS 45 -0.982 53.696 -4.709 1.00 6.25 O ATOM 435 CB LYS 45 -2.699 56.889 -5.457 1.00 6.25 C TER END