####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS407_2-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 13 - 40 4.98 12.90 LONGEST_CONTINUOUS_SEGMENT: 28 14 - 41 4.97 13.12 LCS_AVERAGE: 56.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 19 - 30 1.91 12.31 LCS_AVERAGE: 21.44 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.79 12.56 LCS_AVERAGE: 15.08 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 5 6 9 3 4 5 6 6 6 6 7 7 8 8 8 9 13 17 21 24 24 27 28 LCS_GDT V 3 V 3 5 6 9 3 4 5 6 6 6 6 7 7 8 8 8 12 20 21 22 25 27 30 32 LCS_GDT Q 4 Q 4 5 6 14 3 4 5 6 6 6 6 10 14 17 20 20 21 22 25 26 29 30 33 33 LCS_GDT G 5 G 5 5 6 20 3 4 5 6 6 6 8 11 13 17 20 20 21 23 25 26 29 30 33 33 LCS_GDT P 6 P 6 5 6 20 3 4 5 6 6 7 7 8 12 13 16 17 19 21 23 25 28 30 33 33 LCS_GDT W 7 W 7 4 6 20 3 3 5 6 6 7 8 11 14 17 20 20 21 23 25 26 29 30 33 33 LCS_GDT V 8 V 8 3 5 20 3 4 5 7 10 13 14 15 16 17 20 20 21 23 25 26 29 30 33 33 LCS_GDT G 9 G 9 3 5 20 3 4 4 5 9 13 14 15 16 17 20 20 21 23 25 26 29 30 33 33 LCS_GDT S 10 S 10 8 10 20 6 7 8 9 10 13 14 15 16 17 20 20 21 23 25 26 29 30 33 33 LCS_GDT S 11 S 11 8 10 20 6 7 8 9 10 10 10 12 14 15 16 18 21 22 25 26 29 30 33 33 LCS_GDT Y 12 Y 12 8 10 20 6 7 8 9 10 10 10 12 14 15 16 17 21 22 23 26 27 30 33 33 LCS_GDT V 13 V 13 8 10 28 6 7 8 9 10 10 10 17 18 20 21 22 24 27 27 28 29 30 33 33 LCS_GDT A 14 A 14 8 10 28 6 7 8 9 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT E 15 E 15 8 10 28 6 7 8 9 10 10 10 12 14 15 16 16 18 21 23 26 27 28 29 31 LCS_GDT T 16 T 16 8 10 28 6 7 8 9 10 10 10 12 14 15 16 18 19 21 23 26 28 30 33 33 LCS_GDT G 17 G 17 8 10 28 4 5 8 9 10 10 10 12 17 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT Q 18 Q 18 5 10 28 4 4 5 7 10 10 10 12 19 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT N 19 N 19 4 12 28 3 5 7 9 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT W 20 W 20 10 12 28 6 9 10 10 10 13 14 16 18 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT A 21 A 21 10 12 28 6 9 10 10 10 13 14 16 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT S 22 S 22 10 12 28 6 9 10 10 10 13 14 16 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT L 23 L 23 10 12 28 6 9 10 10 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT A 24 A 24 10 12 28 6 9 10 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT A 25 A 25 10 12 28 6 9 10 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT N 26 N 26 10 12 28 4 9 10 10 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT E 27 E 27 10 12 28 4 9 10 10 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT L 28 L 28 10 12 28 4 9 10 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT R 29 R 29 10 12 28 4 9 10 10 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT V 30 V 30 4 12 28 3 3 5 7 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT T 31 T 31 4 10 28 3 4 5 7 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT E 32 E 32 4 10 28 3 3 4 6 8 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT R 33 R 33 6 10 28 3 4 6 10 10 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT P 34 P 34 6 10 28 3 6 7 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT F 35 F 35 6 10 28 3 6 7 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT W 36 W 36 6 10 28 3 6 7 10 11 13 16 18 20 20 22 23 25 27 27 28 28 30 33 33 LCS_GDT I 37 I 37 6 10 28 3 6 7 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 LCS_GDT S 38 S 38 6 10 28 4 6 8 10 11 13 16 18 20 20 22 23 25 27 27 28 28 28 29 30 LCS_GDT S 39 S 39 6 10 28 4 6 7 10 10 10 10 13 17 20 22 23 25 27 27 28 28 28 29 30 LCS_GDT F 40 F 40 6 10 28 4 5 6 10 10 10 11 13 16 20 22 23 25 27 27 28 28 28 29 30 LCS_GDT I 41 I 41 6 10 28 4 5 6 10 10 10 11 13 17 20 22 23 25 27 27 28 28 28 29 30 LCS_GDT G 42 G 42 6 10 27 4 5 7 10 10 10 10 12 16 18 21 23 24 26 27 28 28 28 29 30 LCS_GDT R 43 R 43 4 5 27 4 4 4 5 5 7 8 11 12 12 13 17 17 20 22 22 25 26 27 28 LCS_GDT S 44 S 44 4 5 16 4 4 4 5 6 7 8 10 12 12 14 17 17 20 22 22 24 25 27 28 LCS_GDT K 45 K 45 4 5 16 4 4 4 5 5 6 7 8 9 10 11 11 11 13 13 14 14 20 20 23 LCS_AVERAGE LCS_A: 30.94 ( 15.08 21.44 56.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 10 10 11 13 16 18 20 20 22 23 25 27 27 28 29 30 33 33 GDT PERCENT_AT 13.64 20.45 22.73 22.73 25.00 29.55 36.36 40.91 45.45 45.45 50.00 52.27 56.82 61.36 61.36 63.64 65.91 68.18 75.00 75.00 GDT RMS_LOCAL 0.25 0.70 0.79 0.79 2.08 2.14 2.52 2.73 3.12 3.12 3.67 3.86 4.19 4.49 4.49 4.81 6.12 6.20 6.70 6.70 GDT RMS_ALL_AT 12.87 12.62 12.56 12.56 12.35 13.40 12.32 12.36 12.34 12.34 12.78 12.78 13.25 12.87 12.87 13.14 13.13 13.43 13.13 13.13 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 22.910 0 0.133 0.144 24.498 0.000 0.000 - LGA V 3 V 3 21.604 0 0.044 0.933 23.871 0.000 0.000 21.697 LGA Q 4 Q 4 24.433 0 0.656 0.819 28.300 0.000 0.000 27.772 LGA G 5 G 5 23.924 0 0.156 0.156 24.026 0.000 0.000 - LGA P 6 P 6 23.428 0 0.053 0.140 23.816 0.000 0.000 23.483 LGA W 7 W 7 21.151 0 0.350 1.192 32.060 0.000 0.000 31.954 LGA V 8 V 8 16.228 0 0.657 0.898 18.309 0.000 0.000 16.266 LGA G 9 G 9 16.743 0 0.481 0.481 16.743 0.000 0.000 - LGA S 10 S 10 12.873 0 0.618 0.663 15.565 0.000 0.000 15.565 LGA S 11 S 11 12.352 0 0.059 0.676 16.175 0.000 0.000 16.175 LGA Y 12 Y 12 12.688 0 0.065 1.424 20.556 0.000 0.000 20.556 LGA V 13 V 13 5.654 0 0.037 0.291 8.412 5.909 4.935 3.992 LGA A 14 A 14 3.245 0 0.027 0.026 6.039 5.909 6.909 - LGA E 15 E 15 10.435 0 0.019 1.411 16.278 0.000 0.000 16.232 LGA T 16 T 16 11.526 0 0.117 0.245 13.299 0.000 0.000 8.753 LGA G 17 G 17 8.944 0 0.383 0.383 8.944 0.000 0.000 - LGA Q 18 Q 18 7.562 0 0.646 1.330 14.931 5.000 2.222 13.446 LGA N 19 N 19 1.880 0 0.032 1.097 4.224 19.545 41.136 1.153 LGA W 20 W 20 7.906 0 0.610 1.175 18.594 0.000 0.000 18.594 LGA A 21 A 21 6.167 0 0.059 0.056 7.039 0.455 0.364 - LGA S 22 S 22 5.932 0 0.040 0.066 7.419 1.818 1.212 7.419 LGA L 23 L 23 4.064 0 0.029 0.847 6.768 21.364 11.591 4.453 LGA A 24 A 24 2.824 0 0.021 0.023 3.786 40.455 34.545 - LGA A 25 A 25 2.279 0 0.020 0.020 3.681 38.182 32.727 - LGA N 26 N 26 3.369 0 0.040 0.805 6.405 20.909 11.364 6.405 LGA E 27 E 27 2.555 0 0.101 1.160 4.297 27.727 40.202 0.729 LGA L 28 L 28 2.168 0 0.221 0.890 5.684 38.636 30.909 5.684 LGA R 29 R 29 3.188 0 0.497 1.528 13.114 40.000 14.711 12.989 LGA V 30 V 30 2.460 0 0.564 1.262 5.752 20.909 20.779 2.255 LGA T 31 T 31 2.507 0 0.654 0.532 4.003 27.727 29.091 2.597 LGA E 32 E 32 3.696 0 0.113 1.002 8.214 11.364 5.051 7.776 LGA R 33 R 33 2.923 0 0.073 1.198 14.987 33.182 12.231 14.987 LGA P 34 P 34 1.799 0 0.232 0.463 3.272 58.636 43.896 2.881 LGA F 35 F 35 0.438 0 0.018 1.287 10.670 58.636 24.793 10.670 LGA W 36 W 36 2.768 0 0.083 1.127 9.565 56.364 16.234 7.630 LGA I 37 I 37 2.297 0 0.113 1.557 6.441 49.091 29.318 4.408 LGA S 38 S 38 2.554 0 0.114 0.159 6.167 24.545 16.667 6.167 LGA S 39 S 39 7.209 0 0.132 0.703 10.082 0.000 0.000 8.518 LGA F 40 F 40 8.669 0 0.049 1.516 12.303 0.000 0.000 12.303 LGA I 41 I 41 8.634 0 0.070 1.074 10.680 0.000 3.636 2.706 LGA G 42 G 42 14.459 0 0.552 0.552 15.920 0.000 0.000 - LGA R 43 R 43 18.401 0 0.085 1.085 27.552 0.000 0.000 27.552 LGA S 44 S 44 20.639 0 0.044 0.625 23.446 0.000 0.000 18.084 LGA K 45 K 45 26.225 0 0.659 0.531 36.933 0.000 0.000 36.933 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 11.810 11.829 13.091 13.781 9.876 8.260 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 18 2.73 36.932 33.559 0.637 LGA_LOCAL RMSD: 2.728 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.362 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 11.810 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.735311 * X + -0.592032 * Y + 0.329871 * Z + 15.853559 Y_new = 0.671377 * X + 0.702797 * Y + -0.235222 * Z + 30.475204 Z_new = -0.092573 * X + 0.394430 * Y + 0.914251 * Z + 8.298751 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.739979 0.092706 0.407299 [DEG: 42.3977 5.3117 23.3365 ] ZXZ: 0.951350 0.417140 -0.230529 [DEG: 54.5083 23.9004 -13.2083 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS407_2-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 18 2.73 33.559 11.81 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS407_2-D1 PFRMAT TS TARGET T0953s2 MODEL 2 PARENT N/A ATOM 12 N ALA 2 3.735 34.472 35.655 1.00 8.55 N ATOM 14 CA ALA 2 3.189 33.307 34.907 1.00 8.55 C ATOM 15 CB ALA 2 1.924 32.740 35.594 1.00 8.55 C ATOM 16 C ALA 2 2.935 33.517 33.400 1.00 8.55 C ATOM 17 O ALA 2 2.326 34.519 33.005 1.00 8.55 O ATOM 18 N VAL 3 3.407 32.563 32.584 1.00 10.69 N ATOM 20 CA VAL 3 3.265 32.581 31.112 1.00 10.69 C ATOM 21 CB VAL 3 4.610 32.190 30.376 1.00 10.69 C ATOM 22 CG1 VAL 3 5.584 33.359 30.425 1.00 10.69 C ATOM 23 CG2 VAL 3 5.268 30.937 31.001 1.00 10.69 C ATOM 24 C VAL 3 2.086 31.727 30.590 1.00 10.69 C ATOM 25 O VAL 3 1.798 30.660 31.149 1.00 10.69 O ATOM 26 N GLN 4 1.413 32.222 29.541 1.00 10.04 N ATOM 28 CA GLN 4 0.261 31.555 28.904 1.00 10.04 C ATOM 29 CB GLN 4 -0.923 32.525 28.762 1.00 10.04 C ATOM 30 CG GLN 4 -1.577 32.933 30.078 1.00 10.04 C ATOM 31 CD GLN 4 -2.738 33.890 29.881 1.00 10.04 C ATOM 32 OE1 GLN 4 -2.560 35.108 29.890 1.00 10.04 O ATOM 33 NE2 GLN 4 -3.934 33.342 29.702 1.00 10.04 N ATOM 36 C GLN 4 0.628 30.984 27.529 1.00 10.04 C ATOM 37 O GLN 4 0.105 29.937 27.130 1.00 10.04 O ATOM 38 N GLY 5 1.524 31.679 26.823 1.00 5.93 N ATOM 40 CA GLY 5 1.969 31.257 25.501 1.00 5.93 C ATOM 41 C GLY 5 2.167 32.437 24.554 1.00 5.93 C ATOM 42 O GLY 5 2.484 33.521 25.054 1.00 5.93 O ATOM 43 N PRO 6 2.017 32.286 23.204 1.00 4.28 N ATOM 44 CD PRO 6 1.919 33.531 22.407 1.00 4.28 C ATOM 45 CA PRO 6 1.674 31.116 22.363 1.00 4.28 C ATOM 46 CB PRO 6 1.221 31.762 21.048 1.00 4.28 C ATOM 47 CG PRO 6 2.010 33.043 20.985 1.00 4.28 C ATOM 48 C PRO 6 2.793 30.062 22.140 1.00 4.28 C ATOM 49 O PRO 6 2.508 28.931 21.722 1.00 4.28 O ATOM 50 N TRP 7 4.046 30.453 22.437 1.00 4.28 N ATOM 52 CA TRP 7 5.293 29.648 22.293 1.00 4.28 C ATOM 53 CB TRP 7 5.317 28.395 23.211 1.00 4.28 C ATOM 54 CG TRP 7 5.205 28.642 24.730 1.00 4.28 C ATOM 55 CD2 TRP 7 4.100 28.294 25.591 1.00 4.28 C ATOM 56 CE2 TRP 7 4.467 28.664 26.916 1.00 4.28 C ATOM 57 CE3 TRP 7 2.832 27.703 25.374 1.00 4.28 C ATOM 58 CD1 TRP 7 6.164 29.192 25.556 1.00 4.28 C ATOM 59 NE1 TRP 7 5.724 29.205 26.857 1.00 4.28 N ATOM 61 CZ2 TRP 7 3.614 28.463 28.029 1.00 4.28 C ATOM 62 CZ3 TRP 7 1.977 27.501 26.486 1.00 4.28 C ATOM 63 CH2 TRP 7 2.379 27.885 27.796 1.00 4.28 C ATOM 64 C TRP 7 5.658 29.235 20.854 1.00 4.28 C ATOM 65 O TRP 7 4.774 28.884 20.062 1.00 4.28 O ATOM 66 N VAL 8 6.962 29.288 20.540 1.00 3.71 N ATOM 68 CA VAL 8 7.523 28.930 19.221 1.00 3.71 C ATOM 69 CB VAL 8 8.375 30.144 18.602 1.00 3.71 C ATOM 70 CG1 VAL 8 9.566 30.541 19.500 1.00 3.71 C ATOM 71 CG2 VAL 8 8.816 29.859 17.159 1.00 3.71 C ATOM 72 C VAL 8 8.331 27.613 19.340 1.00 3.71 C ATOM 73 O VAL 8 8.962 27.367 20.373 1.00 3.71 O ATOM 74 N GLY 9 8.269 26.781 18.296 1.00 3.65 N ATOM 76 CA GLY 9 8.991 25.515 18.281 1.00 3.65 C ATOM 77 C GLY 9 8.181 24.318 17.810 1.00 3.65 C ATOM 78 O GLY 9 8.329 23.223 18.366 1.00 3.65 O ATOM 79 N SER 10 7.332 24.530 16.796 1.00 3.59 N ATOM 81 CA SER 10 6.477 23.482 16.209 1.00 3.59 C ATOM 82 CB SER 10 5.002 23.915 16.228 1.00 3.59 C ATOM 83 OG SER 10 4.554 24.154 17.552 1.00 3.59 O ATOM 85 C SER 10 6.928 23.139 14.776 1.00 3.59 C ATOM 86 O SER 10 6.881 23.995 13.881 1.00 3.59 O ATOM 87 N SER 11 7.406 21.899 14.589 1.00 3.59 N ATOM 89 CA SER 11 7.903 21.371 13.300 1.00 3.59 C ATOM 90 OG SER 11 7.981 19.118 14.229 1.00 3.59 O ATOM 92 C SER 11 6.883 21.134 12.170 1.00 3.59 C ATOM 93 O SER 11 7.133 21.537 11.029 1.00 3.59 O ATOM 94 CB SER 11 8.727 20.101 13.531 1.00 3.59 C ATOM 95 N TYR 12 5.740 20.512 12.499 1.00 3.58 N ATOM 97 CA TYR 12 4.659 20.192 11.537 1.00 3.58 C ATOM 98 CB TYR 12 3.593 19.293 12.206 1.00 3.58 C ATOM 99 CG TYR 12 4.059 17.913 12.688 1.00 3.58 C ATOM 100 CD1 TYR 12 3.985 16.778 11.841 1.00 3.58 C ATOM 101 CE1 TYR 12 4.384 15.490 12.295 1.00 3.58 C ATOM 102 CD2 TYR 12 4.544 17.723 14.006 1.00 3.58 C ATOM 103 CE2 TYR 12 4.945 16.438 14.467 1.00 3.58 C ATOM 104 CZ TYR 12 4.860 15.332 13.606 1.00 3.58 C ATOM 105 OH TYR 12 5.245 14.086 14.047 1.00 3.58 O ATOM 107 C TYR 12 3.981 21.438 10.944 1.00 3.58 C ATOM 108 O TYR 12 3.738 21.497 9.730 1.00 3.58 O ATOM 109 N VAL 13 3.716 22.428 11.810 1.00 3.33 N ATOM 111 CA VAL 13 3.081 23.712 11.447 1.00 3.33 C ATOM 112 CB VAL 13 2.652 24.537 12.725 1.00 3.33 C ATOM 113 CG1 VAL 13 1.533 25.526 12.393 1.00 3.33 C ATOM 114 CG2 VAL 13 2.178 23.607 13.845 1.00 3.33 C ATOM 115 C VAL 13 4.077 24.509 10.566 1.00 3.33 C ATOM 116 O VAL 13 3.668 25.153 9.595 1.00 3.33 O ATOM 117 N ALA 14 5.374 24.409 10.905 1.00 3.01 N ATOM 119 CA ALA 14 6.494 25.060 10.192 1.00 3.01 C ATOM 120 CB ALA 14 7.765 24.983 11.027 1.00 3.01 C ATOM 121 C ALA 14 6.741 24.465 8.793 1.00 3.01 C ATOM 122 O ALA 14 7.000 25.208 7.839 1.00 3.01 O ATOM 123 N GLU 15 6.658 23.129 8.699 1.00 2.89 N ATOM 125 CA GLU 15 6.851 22.350 7.456 1.00 2.89 C ATOM 126 CB GLU 15 6.984 20.853 7.762 1.00 2.89 C ATOM 127 CG GLU 15 8.349 20.437 8.300 1.00 2.89 C ATOM 128 CD GLU 15 8.437 18.950 8.590 1.00 2.89 C ATOM 129 OE1 GLU 15 8.823 18.187 7.679 1.00 2.89 O ATOM 130 OE2 GLU 15 8.123 18.544 9.729 1.00 2.89 O ATOM 131 C GLU 15 5.742 22.573 6.415 1.00 2.89 C ATOM 132 O GLU 15 6.021 22.596 5.210 1.00 2.89 O ATOM 133 N THR 16 4.498 22.737 6.894 1.00 2.64 N ATOM 135 CA THR 16 3.306 22.969 6.049 1.00 2.64 C ATOM 136 CB THR 16 1.986 22.874 6.871 1.00 2.64 C ATOM 137 OG1 THR 16 2.086 23.689 8.045 1.00 2.64 O ATOM 139 CG2 THR 16 1.700 21.432 7.272 1.00 2.64 C ATOM 140 C THR 16 3.354 24.305 5.278 1.00 2.64 C ATOM 141 O THR 16 2.932 24.364 4.118 1.00 2.64 O ATOM 142 N GLY 17 3.891 25.349 5.924 1.00 2.39 N ATOM 144 CA GLY 17 4.022 26.665 5.302 1.00 2.39 C ATOM 145 C GLY 17 2.989 27.716 5.677 1.00 2.39 C ATOM 146 O GLY 17 3.296 28.643 6.436 1.00 2.39 O ATOM 147 N GLN 18 1.772 27.563 5.139 1.00 2.50 N ATOM 149 CA GLN 18 0.626 28.468 5.356 1.00 2.50 C ATOM 150 CB GLN 18 -0.514 28.142 4.381 1.00 2.50 C ATOM 151 CG GLN 18 -0.223 28.479 2.922 1.00 2.50 C ATOM 152 CD GLN 18 -1.379 28.135 2.002 1.00 2.50 C ATOM 153 OE1 GLN 18 -1.450 27.031 1.462 1.00 2.50 O ATOM 154 NE2 GLN 18 -2.293 29.082 1.818 1.00 2.50 N ATOM 157 C GLN 18 0.095 28.449 6.798 1.00 2.50 C ATOM 158 O GLN 18 -0.313 29.493 7.323 1.00 2.50 O ATOM 159 N ASN 19 0.118 27.261 7.420 1.00 2.19 N ATOM 161 CA ASN 19 -0.342 27.034 8.805 1.00 2.19 C ATOM 162 CB ASN 19 -0.354 25.533 9.133 1.00 2.19 C ATOM 163 CG ASN 19 -1.410 24.762 8.348 1.00 2.19 C ATOM 164 OD1 ASN 19 -2.531 24.567 8.820 1.00 2.19 O ATOM 165 ND2 ASN 19 -1.049 24.309 7.149 1.00 2.19 N ATOM 168 C ASN 19 0.497 27.794 9.850 1.00 2.19 C ATOM 169 O ASN 19 -0.059 28.317 10.820 1.00 2.19 O ATOM 170 N TRP 20 1.817 27.875 9.618 1.00 2.05 N ATOM 172 CA TRP 20 2.777 28.573 10.502 1.00 2.05 C ATOM 173 CB TRP 20 4.236 28.205 10.106 1.00 2.05 C ATOM 174 CG TRP 20 5.381 28.727 11.023 1.00 2.05 C ATOM 175 CD2 TRP 20 5.792 28.212 12.311 1.00 2.05 C ATOM 176 CE2 TRP 20 6.896 29.000 12.742 1.00 2.05 C ATOM 177 CE3 TRP 20 5.336 27.165 13.143 1.00 2.05 C ATOM 178 CD1 TRP 20 6.233 29.771 10.748 1.00 2.05 C ATOM 179 NE1 TRP 20 7.136 29.935 11.769 1.00 2.05 N ATOM 181 CZ2 TRP 20 7.558 28.777 13.972 1.00 2.05 C ATOM 182 CZ3 TRP 20 5.996 26.939 14.376 1.00 2.05 C ATOM 183 CH2 TRP 20 7.097 27.748 14.773 1.00 2.05 C ATOM 184 C TRP 20 2.546 30.103 10.487 1.00 2.05 C ATOM 185 O TRP 20 2.529 30.734 11.551 1.00 2.05 O ATOM 186 N ALA 21 2.333 30.665 9.285 1.00 2.28 N ATOM 188 CA ALA 21 2.078 32.106 9.072 1.00 2.28 C ATOM 189 CB ALA 21 2.174 32.448 7.585 1.00 2.28 C ATOM 190 C ALA 21 0.720 32.559 9.637 1.00 2.28 C ATOM 191 O ALA 21 0.637 33.608 10.289 1.00 2.28 O ATOM 192 N SER 22 -0.320 31.741 9.405 1.00 2.83 N ATOM 194 CA SER 22 -1.700 31.991 9.868 1.00 2.83 C ATOM 195 CB SER 22 -2.682 31.033 9.178 1.00 2.83 C ATOM 196 OG SER 22 -2.316 29.677 9.377 1.00 2.83 O ATOM 198 C SER 22 -1.853 31.909 11.400 1.00 2.83 C ATOM 199 O SER 22 -2.466 32.796 12.006 1.00 2.83 O ATOM 200 N LEU 23 -1.266 30.866 12.008 1.00 3.01 N ATOM 202 CA LEU 23 -1.294 30.637 13.466 1.00 3.01 C ATOM 203 CB LEU 23 -0.804 29.208 13.816 1.00 3.01 C ATOM 204 CG LEU 23 -1.612 27.878 13.915 1.00 3.01 C ATOM 205 CD1 LEU 23 -2.467 27.817 15.191 1.00 3.01 C ATOM 206 CD2 LEU 23 -2.454 27.546 12.667 1.00 3.01 C ATOM 207 C LEU 23 -0.490 31.686 14.252 1.00 3.01 C ATOM 208 O LEU 23 -0.933 32.127 15.316 1.00 3.01 O ATOM 209 N ALA 24 0.667 32.089 13.706 1.00 2.93 N ATOM 211 CA ALA 24 1.559 33.104 14.304 1.00 2.93 C ATOM 212 CB ALA 24 2.899 33.124 13.579 1.00 2.93 C ATOM 213 C ALA 24 0.921 34.505 14.283 1.00 2.93 C ATOM 214 O ALA 24 0.996 35.239 15.276 1.00 2.93 O ATOM 215 N ALA 25 0.255 34.831 13.164 1.00 2.91 N ATOM 217 CA ALA 25 -0.433 36.119 12.944 1.00 2.91 C ATOM 218 CB ALA 25 -0.851 36.251 11.482 1.00 2.91 C ATOM 219 C ALA 25 -1.654 36.290 13.867 1.00 2.91 C ATOM 220 O ALA 25 -1.836 37.360 14.458 1.00 2.91 O ATOM 221 N ASN 26 -2.473 35.233 13.973 1.00 3.31 N ATOM 223 CA ASN 26 -3.680 35.193 14.824 1.00 3.31 C ATOM 224 CB ASN 26 -4.574 34.002 14.444 1.00 3.31 C ATOM 225 CG ASN 26 -5.340 34.228 13.145 1.00 3.31 C ATOM 226 OD1 ASN 26 -4.866 33.887 12.061 1.00 3.31 O ATOM 227 ND2 ASN 26 -6.540 34.792 13.256 1.00 3.31 N ATOM 230 C ASN 26 -3.400 35.188 16.340 1.00 3.31 C ATOM 231 O ASN 26 -4.050 35.928 17.086 1.00 3.31 O ATOM 232 N GLU 27 -2.440 34.356 16.776 1.00 3.14 N ATOM 234 CA GLU 27 -2.038 34.214 18.195 1.00 3.14 C ATOM 235 CG GLU 27 -2.020 31.640 18.306 1.00 3.14 C ATOM 236 CD GLU 27 -1.169 30.401 18.509 1.00 3.14 C ATOM 237 OE1 GLU 27 -1.070 29.930 19.661 1.00 3.14 O ATOM 238 OE2 GLU 27 -0.605 29.894 17.517 1.00 3.14 O ATOM 239 C GLU 27 -1.313 35.417 18.829 1.00 3.14 C ATOM 240 O GLU 27 -1.657 35.815 19.948 1.00 3.14 O ATOM 241 CB GLU 27 -1.214 32.935 18.403 1.00 3.14 C ATOM 242 N LEU 28 -0.326 35.983 18.119 1.00 3.01 N ATOM 244 CA LEU 28 0.466 37.147 18.576 1.00 3.01 C ATOM 245 CB LEU 28 1.739 37.320 17.708 1.00 3.01 C ATOM 246 CG LEU 28 3.093 36.551 17.781 1.00 3.01 C ATOM 247 CD1 LEU 28 3.924 36.957 19.011 1.00 3.01 C ATOM 248 CD2 LEU 28 2.963 35.019 17.685 1.00 3.01 C ATOM 249 C LEU 28 -0.311 38.473 18.659 1.00 3.01 C ATOM 250 O LEU 28 -0.081 39.269 19.577 1.00 3.01 O ATOM 251 N ARG 29 -1.225 38.689 17.695 1.00 3.21 N ATOM 253 CA ARG 29 -2.107 39.882 17.556 1.00 3.21 C ATOM 254 CB ARG 29 -3.197 39.926 18.648 1.00 3.21 C ATOM 255 CG ARG 29 -4.251 38.824 18.544 1.00 3.21 C ATOM 256 CD ARG 29 -5.302 38.920 19.650 1.00 3.21 C ATOM 257 NE ARG 29 -6.182 40.084 19.500 1.00 3.21 N ATOM 259 CZ ARG 29 -7.180 40.404 20.325 1.00 3.21 C ATOM 260 NH1 ARG 29 -7.907 41.485 20.083 1.00 3.21 N ATOM 263 NH2 ARG 29 -7.459 39.658 21.390 1.00 3.21 N ATOM 266 C ARG 29 -1.424 41.261 17.450 1.00 3.21 C ATOM 267 O ARG 29 -0.402 41.505 18.102 1.00 3.21 O ATOM 268 N VAL 30 -2.010 42.141 16.625 1.00 3.64 N ATOM 270 CA VAL 30 -1.527 43.516 16.376 1.00 3.64 C ATOM 271 CB VAL 30 -1.472 43.812 14.798 1.00 3.64 C ATOM 272 CG1 VAL 30 -2.877 43.859 14.162 1.00 3.64 C ATOM 273 CG2 VAL 30 -0.646 45.069 14.480 1.00 3.64 C ATOM 274 C VAL 30 -2.383 44.534 17.194 1.00 3.64 C ATOM 275 O VAL 30 -2.162 45.752 17.123 1.00 3.64 O ATOM 276 N THR 31 -3.306 43.995 18.014 1.00 3.82 N ATOM 278 CA THR 31 -4.262 44.725 18.899 1.00 3.82 C ATOM 279 CB THR 31 -3.579 45.388 20.159 1.00 3.82 C ATOM 280 OG1 THR 31 -2.533 46.275 19.739 1.00 3.82 O ATOM 282 CG2 THR 31 -3.003 44.323 21.086 1.00 3.82 C ATOM 283 C THR 31 -5.197 45.742 18.209 1.00 3.82 C ATOM 284 O THR 31 -4.761 46.496 17.328 1.00 3.82 O ATOM 285 N GLU 32 -6.479 45.739 18.618 1.00 4.57 N ATOM 287 CA GLU 32 -7.579 46.606 18.107 1.00 4.57 C ATOM 288 CB GLU 32 -7.411 48.081 18.540 1.00 4.57 C ATOM 289 CG GLU 32 -7.565 48.326 20.038 1.00 4.57 C ATOM 290 CD GLU 32 -7.392 49.785 20.414 1.00 4.57 C ATOM 291 OE1 GLU 32 -8.401 50.522 20.427 1.00 4.57 O ATOM 292 OE2 GLU 32 -6.248 50.198 20.699 1.00 4.57 O ATOM 293 C GLU 32 -7.837 46.512 16.589 1.00 4.57 C ATOM 294 O GLU 32 -6.928 46.748 15.782 1.00 4.57 O ATOM 295 N ARG 33 -9.080 46.146 16.222 1.00 4.15 N ATOM 297 CA ARG 33 -9.580 45.972 14.828 1.00 4.15 C ATOM 298 CB ARG 33 -9.678 47.315 14.071 1.00 4.15 C ATOM 299 CG ARG 33 -10.739 48.276 14.610 1.00 4.15 C ATOM 300 CD ARG 33 -10.788 49.585 13.823 1.00 4.15 C ATOM 301 NE ARG 33 -9.602 50.422 14.035 1.00 4.15 N ATOM 303 CZ ARG 33 -9.392 51.612 13.471 1.00 4.15 C ATOM 304 NH1 ARG 33 -8.276 52.275 13.743 1.00 4.15 N ATOM 307 NH2 ARG 33 -10.280 52.147 12.639 1.00 4.15 N ATOM 310 C ARG 33 -8.826 44.923 13.963 1.00 4.15 C ATOM 311 O ARG 33 -7.592 44.857 14.030 1.00 4.15 O ATOM 312 N PRO 34 -9.549 44.090 13.147 1.00 4.01 N ATOM 313 CD PRO 34 -11.021 43.916 13.089 1.00 4.01 C ATOM 314 CA PRO 34 -8.892 43.069 12.300 1.00 4.01 C ATOM 315 CB PRO 34 -10.076 42.243 11.769 1.00 4.01 C ATOM 316 CG PRO 34 -11.227 43.217 11.777 1.00 4.01 C ATOM 317 C PRO 34 -7.936 43.556 11.170 1.00 4.01 C ATOM 318 O PRO 34 -8.377 44.189 10.200 1.00 4.01 O ATOM 319 N PHE 35 -6.635 43.289 11.355 1.00 4.16 N ATOM 321 CA PHE 35 -5.562 43.649 10.409 1.00 4.16 C ATOM 322 CB PHE 35 -4.748 44.872 10.915 1.00 4.16 C ATOM 323 CG PHE 35 -5.479 46.210 10.822 1.00 4.16 C ATOM 324 CD1 PHE 35 -6.198 46.720 11.929 1.00 4.16 C ATOM 325 CD2 PHE 35 -5.415 46.991 9.643 1.00 4.16 C ATOM 326 CE1 PHE 35 -6.842 47.988 11.866 1.00 4.16 C ATOM 327 CE2 PHE 35 -6.053 48.259 9.564 1.00 4.16 C ATOM 328 CZ PHE 35 -6.769 48.758 10.679 1.00 4.16 C ATOM 329 C PHE 35 -4.610 42.463 10.198 1.00 4.16 C ATOM 330 O PHE 35 -4.445 41.635 11.102 1.00 4.16 O ATOM 331 N TRP 36 -4.001 42.396 9.006 1.00 4.47 N ATOM 333 CA TRP 36 -3.048 41.338 8.617 1.00 4.47 C ATOM 334 CB TRP 36 -3.446 40.725 7.254 1.00 4.47 C ATOM 335 CG TRP 36 -4.817 40.009 7.202 1.00 4.47 C ATOM 336 CD2 TRP 36 -6.110 40.600 6.926 1.00 4.47 C ATOM 337 CE2 TRP 36 -7.064 39.544 6.947 1.00 4.47 C ATOM 338 CE3 TRP 36 -6.554 41.916 6.662 1.00 4.47 C ATOM 339 CD1 TRP 36 -5.050 38.664 7.373 1.00 4.47 C ATOM 340 NE1 TRP 36 -6.386 38.385 7.220 1.00 4.47 N ATOM 342 CZ2 TRP 36 -8.444 39.758 6.715 1.00 4.47 C ATOM 343 CZ3 TRP 36 -7.936 42.134 6.428 1.00 4.47 C ATOM 344 CH2 TRP 36 -8.860 41.052 6.458 1.00 4.47 C ATOM 345 C TRP 36 -1.622 41.905 8.535 1.00 4.47 C ATOM 346 O TRP 36 -1.451 43.100 8.267 1.00 4.47 O ATOM 347 N ILE 37 -0.618 41.045 8.764 1.00 4.07 N ATOM 349 CA ILE 37 0.818 41.412 8.731 1.00 4.07 C ATOM 350 CB ILE 37 1.733 40.329 9.438 1.00 4.07 C ATOM 351 CG2 ILE 37 1.615 40.483 10.962 1.00 4.07 C ATOM 352 CG1 ILE 37 1.391 38.891 8.978 1.00 4.07 C ATOM 353 CD1 ILE 37 2.591 37.940 8.868 1.00 4.07 C ATOM 354 C ILE 37 1.382 41.789 7.337 1.00 4.07 C ATOM 355 O ILE 37 2.086 42.798 7.208 1.00 4.07 O ATOM 356 N SER 38 1.055 40.975 6.322 1.00 4.12 N ATOM 358 CA SER 38 1.478 41.165 4.918 1.00 4.12 C ATOM 359 CB SER 38 1.230 39.880 4.115 1.00 4.12 C ATOM 360 OG SER 38 -0.121 39.461 4.209 1.00 4.12 O ATOM 362 C SER 38 0.829 42.376 4.213 1.00 4.12 C ATOM 363 O SER 38 1.512 43.118 3.498 1.00 4.12 O ATOM 364 N SER 39 -0.485 42.548 4.430 1.00 4.42 N ATOM 366 CA SER 39 -1.317 43.631 3.860 1.00 4.42 C ATOM 367 CB SER 39 -2.802 43.307 4.050 1.00 4.42 C ATOM 368 OG SER 39 -3.146 42.093 3.404 1.00 4.42 O ATOM 370 C SER 39 -1.030 45.058 4.371 1.00 4.42 C ATOM 371 O SER 39 -1.102 46.017 3.593 1.00 4.42 O ATOM 372 N PHE 40 -0.704 45.174 5.667 1.00 4.95 N ATOM 374 CA PHE 40 -0.416 46.450 6.363 1.00 4.95 C ATOM 375 CB PHE 40 -0.192 46.182 7.878 1.00 4.95 C ATOM 376 CG PHE 40 -0.573 47.342 8.805 1.00 4.95 C ATOM 377 CD1 PHE 40 -1.878 47.436 9.349 1.00 4.95 C ATOM 378 CD2 PHE 40 0.380 48.323 9.170 1.00 4.95 C ATOM 379 CE1 PHE 40 -2.229 48.487 10.240 1.00 4.95 C ATOM 380 CE2 PHE 40 0.044 49.381 10.060 1.00 4.95 C ATOM 381 CZ PHE 40 -1.265 49.463 10.596 1.00 4.95 C ATOM 382 C PHE 40 0.767 47.261 5.784 1.00 4.95 C ATOM 383 O PHE 40 0.706 48.496 5.749 1.00 4.95 O ATOM 384 N ILE 41 1.819 46.558 5.341 1.00 4.60 N ATOM 386 CA ILE 41 3.035 47.169 4.757 1.00 4.60 C ATOM 387 CB ILE 41 4.354 46.402 5.180 1.00 4.60 C ATOM 388 CG2 ILE 41 4.746 46.824 6.605 1.00 4.60 C ATOM 389 CG1 ILE 41 4.200 44.868 5.052 1.00 4.60 C ATOM 390 CD1 ILE 41 5.487 44.107 4.712 1.00 4.60 C ATOM 391 C ILE 41 2.975 47.383 3.228 1.00 4.60 C ATOM 392 O ILE 41 2.382 46.571 2.509 1.00 4.60 O ATOM 393 N GLY 42 3.581 48.482 2.760 1.00 4.35 N ATOM 395 CA GLY 42 3.596 48.822 1.340 1.00 4.35 C ATOM 396 C GLY 42 4.898 48.522 0.612 1.00 4.35 C ATOM 397 O GLY 42 5.336 47.365 0.585 1.00 4.35 O ATOM 398 N ARG 43 5.505 49.564 0.030 1.00 4.41 N ATOM 400 CA ARG 43 6.765 49.469 -0.728 1.00 4.41 C ATOM 401 CB ARG 43 6.689 50.303 -2.018 1.00 4.41 C ATOM 402 CG ARG 43 5.733 49.758 -3.074 1.00 4.41 C ATOM 403 CD ARG 43 5.721 50.638 -4.313 1.00 4.41 C ATOM 404 NE ARG 43 4.809 50.131 -5.342 1.00 4.41 N ATOM 406 CZ ARG 43 4.598 50.699 -6.530 1.00 4.41 C ATOM 407 NH1 ARG 43 3.744 50.142 -7.378 1.00 4.41 N ATOM 410 NH2 ARG 43 5.229 51.815 -6.882 1.00 4.41 N ATOM 413 C ARG 43 8.006 49.877 0.088 1.00 4.41 C ATOM 414 O ARG 43 7.990 50.902 0.782 1.00 4.41 O ATOM 415 N SER 44 9.056 49.043 0.013 1.00 4.44 N ATOM 417 CA SER 44 10.339 49.247 0.712 1.00 4.44 C ATOM 418 CB SER 44 10.472 48.295 1.918 1.00 4.44 C ATOM 419 OG SER 44 10.255 46.942 1.559 1.00 4.44 O ATOM 421 C SER 44 11.536 49.043 -0.229 1.00 4.44 C ATOM 422 O SER 44 11.432 48.305 -1.214 1.00 4.44 O ATOM 423 N LYS 45 12.658 49.706 0.091 1.00 3.76 N ATOM 425 CA LYS 45 13.921 49.624 -0.667 1.00 3.76 C ATOM 426 CG LYS 45 15.341 51.248 -2.112 1.00 3.76 C ATOM 427 CD LYS 45 15.899 52.659 -2.177 1.00 3.76 C ATOM 428 CE LYS 45 16.701 52.878 -3.450 1.00 3.76 C ATOM 429 NZ LYS 45 17.255 54.258 -3.527 1.00 3.76 N ATOM 433 C LYS 45 14.865 48.696 0.135 1.00 3.76 C ATOM 434 O LYS 45 15.947 48.327 -0.341 1.00 3.76 O ATOM 435 CB LYS 45 14.531 51.028 -0.828 1.00 3.76 C TER END