####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS401_3-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS401_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 2 - 18 4.44 27.42 LONGEST_CONTINUOUS_SEGMENT: 17 7 - 23 4.97 16.86 LONGEST_CONTINUOUS_SEGMENT: 17 16 - 32 4.93 14.09 LONGEST_CONTINUOUS_SEGMENT: 17 17 - 33 4.85 18.23 LONGEST_CONTINUOUS_SEGMENT: 17 23 - 39 4.79 15.32 LONGEST_CONTINUOUS_SEGMENT: 17 24 - 40 4.88 15.89 LCS_AVERAGE: 37.96 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 1.24 19.57 LONGEST_CONTINUOUS_SEGMENT: 10 36 - 45 1.83 24.91 LCS_AVERAGE: 17.92 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 20 - 27 0.83 19.34 LONGEST_CONTINUOUS_SEGMENT: 8 21 - 28 0.78 20.15 LONGEST_CONTINUOUS_SEGMENT: 8 22 - 29 0.67 20.54 LCS_AVERAGE: 11.67 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 17 0 4 4 7 8 10 11 13 14 15 16 16 16 17 17 17 18 18 19 19 LCS_GDT V 3 V 3 3 6 17 0 3 4 6 8 10 11 13 14 15 16 16 16 17 20 22 24 25 26 27 LCS_GDT Q 4 Q 4 3 6 17 2 3 5 5 8 10 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT G 5 G 5 5 6 17 2 4 5 6 8 10 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT P 6 P 6 5 6 17 3 4 5 5 6 9 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT W 7 W 7 5 6 17 3 4 5 6 8 10 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT V 8 V 8 5 6 17 3 4 5 5 6 9 9 13 14 15 16 16 16 19 20 22 24 25 26 27 LCS_GDT G 9 G 9 5 6 17 3 4 5 6 6 9 10 13 14 15 16 16 16 17 17 17 18 20 23 25 LCS_GDT S 10 S 10 5 7 17 3 4 5 7 8 10 11 13 14 15 16 16 16 17 20 22 24 25 26 27 LCS_GDT S 11 S 11 5 7 17 4 4 5 7 7 8 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT Y 12 Y 12 5 7 17 4 4 5 7 7 10 11 13 14 15 16 16 16 17 18 21 22 24 24 26 LCS_GDT V 13 V 13 5 7 17 4 4 5 7 8 10 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT A 14 A 14 5 7 17 4 4 5 7 7 10 11 13 14 15 16 16 17 19 20 22 24 25 26 27 LCS_GDT E 15 E 15 5 7 17 3 4 4 7 8 10 11 13 14 15 16 16 16 19 20 21 24 25 26 27 LCS_GDT T 16 T 16 4 7 17 3 4 5 5 7 9 9 12 14 15 16 16 17 19 20 23 24 25 26 27 LCS_GDT G 17 G 17 4 5 17 3 4 4 4 6 8 9 9 12 13 16 16 18 19 20 23 24 25 26 27 LCS_GDT Q 18 Q 18 4 4 17 3 3 5 5 5 6 7 9 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT N 19 N 19 4 4 17 3 3 4 4 5 5 7 9 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT W 20 W 20 8 10 17 4 6 8 9 10 10 10 10 11 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT A 21 A 21 8 10 17 4 7 8 9 10 10 10 10 12 13 14 15 17 19 20 23 24 25 26 27 LCS_GDT S 22 S 22 8 10 17 6 7 8 9 10 10 10 10 12 13 14 15 17 19 20 23 24 25 26 27 LCS_GDT L 23 L 23 8 10 17 6 7 8 9 10 10 10 10 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT A 24 A 24 8 10 17 6 7 8 9 10 10 10 10 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT A 25 A 25 8 10 17 6 7 8 9 10 10 10 10 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT N 26 N 26 8 10 17 6 7 8 9 10 10 10 10 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT E 27 E 27 8 10 17 6 7 8 9 10 10 10 10 11 13 14 15 18 18 20 23 24 25 26 27 LCS_GDT L 28 L 28 8 10 17 4 7 8 9 10 10 10 10 11 12 13 15 18 18 19 21 23 24 25 27 LCS_GDT R 29 R 29 8 10 17 4 5 8 9 10 10 10 10 11 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT V 30 V 30 3 4 17 3 3 4 4 5 6 8 10 12 13 14 15 18 19 20 23 23 25 26 27 LCS_GDT T 31 T 31 3 7 17 3 3 4 6 7 7 8 10 12 13 14 15 18 19 20 23 24 25 26 27 LCS_GDT E 32 E 32 3 7 17 3 3 4 4 7 7 8 10 12 13 14 15 18 19 20 23 23 24 25 26 LCS_GDT R 33 R 33 3 7 17 1 3 4 6 7 8 10 11 11 13 14 15 18 19 20 23 23 24 25 26 LCS_GDT P 34 P 34 4 7 17 2 4 4 6 7 7 8 11 11 13 14 15 18 19 20 23 23 24 25 26 LCS_GDT F 35 F 35 4 7 17 3 4 4 6 7 8 10 11 11 13 14 15 18 19 20 23 23 24 25 26 LCS_GDT W 36 W 36 5 10 17 4 4 6 8 9 10 10 11 11 13 14 15 18 19 20 23 23 24 25 26 LCS_GDT I 37 I 37 5 10 17 4 4 6 8 9 10 10 11 11 13 14 15 16 17 20 23 23 24 25 26 LCS_GDT S 38 S 38 5 10 17 4 4 6 8 9 10 10 11 11 13 14 15 16 17 19 23 23 24 25 26 LCS_GDT S 39 S 39 5 10 17 4 4 6 8 9 10 10 11 11 13 14 15 16 17 19 23 23 24 25 26 LCS_GDT F 40 F 40 5 10 17 4 4 6 8 9 10 10 11 11 12 13 14 15 15 17 20 22 24 25 26 LCS_GDT I 41 I 41 5 10 16 4 4 6 8 8 10 10 11 11 12 13 14 15 15 17 20 22 24 25 26 LCS_GDT G 42 G 42 5 10 14 3 4 5 8 9 10 10 11 11 12 12 12 13 15 16 17 19 21 25 25 LCS_GDT R 43 R 43 4 10 14 3 4 6 8 9 10 10 11 11 12 12 12 13 13 14 15 16 17 21 22 LCS_GDT S 44 S 44 4 10 14 3 4 4 8 9 10 10 10 11 12 12 12 13 13 13 13 13 15 15 17 LCS_GDT K 45 K 45 3 10 14 0 3 4 8 9 10 10 10 10 10 11 11 12 13 13 13 13 14 14 15 LCS_AVERAGE LCS_A: 22.52 ( 11.67 17.92 37.96 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 7 8 9 10 10 11 13 14 15 16 16 18 19 20 23 24 25 26 27 GDT PERCENT_AT 13.64 15.91 18.18 20.45 22.73 22.73 25.00 29.55 31.82 34.09 36.36 36.36 40.91 43.18 45.45 52.27 54.55 56.82 59.09 61.36 GDT RMS_LOCAL 0.26 0.39 0.67 1.00 1.24 1.24 2.19 2.70 2.89 3.18 3.75 3.75 4.96 5.16 5.37 5.96 6.05 6.29 6.47 6.72 GDT RMS_ALL_AT 20.33 20.51 20.54 19.53 19.57 19.57 28.95 29.39 29.52 28.55 28.15 28.15 17.20 15.27 15.06 14.35 15.10 14.85 14.43 14.44 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 1.310 0 0.404 0.443 3.803 48.182 46.182 - LGA V 3 V 3 2.538 0 0.054 1.067 4.626 35.909 30.130 2.418 LGA Q 4 Q 4 2.952 0 0.648 1.470 5.819 21.818 15.152 4.138 LGA G 5 G 5 1.574 0 0.059 0.059 4.167 33.636 33.636 - LGA P 6 P 6 3.754 0 0.118 0.139 5.127 18.636 11.429 5.125 LGA W 7 W 7 1.034 0 0.094 0.122 7.681 45.000 15.455 7.017 LGA V 8 V 8 4.934 0 0.374 0.370 8.107 5.000 2.857 8.107 LGA G 9 G 9 4.789 0 0.039 0.039 4.964 5.909 5.909 - LGA S 10 S 10 2.979 0 0.645 0.856 6.718 34.545 23.333 6.718 LGA S 11 S 11 3.416 0 0.105 0.624 6.273 25.455 17.879 6.273 LGA Y 12 Y 12 2.298 0 0.038 1.271 3.690 51.818 36.364 3.690 LGA V 13 V 13 1.448 0 0.173 1.285 4.221 56.364 47.532 1.526 LGA A 14 A 14 2.963 0 0.198 0.201 3.987 31.818 27.636 - LGA E 15 E 15 0.982 0 0.006 0.954 7.565 57.273 28.081 6.079 LGA T 16 T 16 6.807 0 0.091 0.183 10.006 1.364 0.779 8.757 LGA G 17 G 17 10.651 0 0.193 0.193 14.797 0.000 0.000 - LGA Q 18 Q 18 14.280 0 0.648 1.063 16.215 0.000 0.000 13.949 LGA N 19 N 19 17.937 0 0.101 1.005 21.084 0.000 0.000 17.129 LGA W 20 W 20 21.995 0 0.635 0.918 24.054 0.000 0.000 23.644 LGA A 21 A 21 22.551 0 0.039 0.042 24.175 0.000 0.000 - LGA S 22 S 22 26.356 0 0.164 0.173 27.225 0.000 0.000 26.366 LGA L 23 L 23 25.883 0 0.045 0.202 27.719 0.000 0.000 25.574 LGA A 24 A 24 24.595 0 0.000 0.000 25.615 0.000 0.000 - LGA A 25 A 25 26.851 0 0.012 0.035 28.076 0.000 0.000 - LGA N 26 N 26 28.386 0 0.068 0.621 30.361 0.000 0.000 30.361 LGA E 27 E 27 27.006 0 0.000 0.911 27.655 0.000 0.000 25.666 LGA L 28 L 28 28.061 0 0.142 0.143 30.722 0.000 0.000 26.582 LGA R 29 R 29 32.086 0 0.332 1.660 35.917 0.000 0.000 26.952 LGA V 30 V 30 36.528 0 0.633 1.046 40.056 0.000 0.000 36.334 LGA T 31 T 31 41.442 0 0.082 0.089 45.601 0.000 0.000 39.900 LGA E 32 E 32 44.810 0 0.686 0.983 46.680 0.000 0.000 39.538 LGA R 33 R 33 49.532 0 0.193 0.945 51.416 0.000 0.000 41.835 LGA P 34 P 34 51.684 0 0.142 0.142 55.896 0.000 0.000 55.896 LGA F 35 F 35 45.559 0 0.121 1.313 47.829 0.000 0.000 42.673 LGA W 36 W 36 43.453 0 0.616 0.498 49.103 0.000 0.000 49.103 LGA I 37 I 37 39.813 0 0.132 0.770 40.947 0.000 0.000 35.577 LGA S 38 S 38 42.015 0 0.136 0.628 45.540 0.000 0.000 45.540 LGA S 39 S 39 44.227 0 0.156 0.713 45.059 0.000 0.000 45.021 LGA F 40 F 40 40.297 0 0.084 1.404 41.440 0.000 0.000 38.476 LGA I 41 I 41 39.502 0 0.599 0.614 42.654 0.000 0.000 37.902 LGA G 42 G 42 41.577 0 0.283 0.283 43.375 0.000 0.000 - LGA R 43 R 43 44.470 0 0.568 1.473 53.700 0.000 0.000 52.260 LGA S 44 S 44 43.973 0 0.526 0.609 44.889 0.000 0.000 44.401 LGA K 45 K 45 43.416 0 0.636 0.764 45.872 0.000 0.000 45.872 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 12.160 12.032 13.106 10.744 7.781 3.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 13 2.70 29.545 25.922 0.464 LGA_LOCAL RMSD: 2.705 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 29.389 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 12.160 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.485703 * X + 0.216464 * Y + -0.846898 * Z + -37.381779 Y_new = -0.600834 * X + 0.786372 * Y + -0.143589 * Z + 341.184998 Z_new = 0.634895 * X + 0.578587 * Y + 0.512002 * Z + -10.802724 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.890965 -0.687872 0.846376 [DEG: -51.0485 -39.4122 48.4938 ] ZXZ: -1.402846 1.033282 0.831767 [DEG: -80.3772 59.2027 47.6567 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS401_3-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS401_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 13 2.70 25.922 12.16 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS401_3-D1 PFRMAT TS TARGET T0953s2 MODEL 3 REFINED PARENT N/A ATOM 9 N ALA 2 8.882 37.973 13.904 1.00 8.90 ATOM 10 CA ALA 2 10.246 37.417 13.947 1.00 8.90 ATOM 11 C ALA 2 10.542 36.482 12.747 1.00 8.90 ATOM 12 O ALA 2 10.696 35.268 12.899 1.00 8.90 ATOM 13 CB ALA 2 10.435 36.739 15.313 1.00 9.20 ATOM 14 N VAL 3 10.583 37.050 11.535 1.00 6.90 ATOM 15 CA VAL 3 10.727 36.334 10.252 1.00 6.90 ATOM 16 C VAL 3 11.546 37.145 9.235 1.00 6.90 ATOM 17 O VAL 3 11.546 38.376 9.252 1.00 6.90 ATOM 18 CB VAL 3 9.335 35.940 9.700 1.00 7.10 ATOM 19 CG1 VAL 3 8.470 37.143 9.303 1.00 7.10 ATOM 20 CG2 VAL 3 9.428 35.021 8.475 1.00 7.10 ATOM 21 N GLN 4 12.219 36.441 8.319 1.00 6.50 ATOM 22 CA GLN 4 12.972 37.022 7.200 1.00 6.50 ATOM 23 C GLN 4 12.101 37.874 6.248 1.00 6.50 ATOM 24 O GLN 4 12.549 38.917 5.771 1.00 6.50 ATOM 25 CB GLN 4 13.652 35.849 6.469 1.00 7.00 ATOM 26 CG GLN 4 14.321 36.205 5.132 1.00 7.00 ATOM 27 CD GLN 4 13.346 36.145 3.951 1.00 7.00 ATOM 28 OE1 GLN 4 12.734 35.131 3.650 1.00 7.00 ATOM 29 NE2 GLN 4 13.130 37.244 3.259 1.00 7.00 ATOM 30 N GLY 5 10.875 37.426 5.948 1.00 6.90 ATOM 31 CA GLY 5 9.944 38.074 5.010 1.00 6.90 ATOM 32 C GLY 5 8.583 37.361 4.910 1.00 6.90 ATOM 33 O GLY 5 8.361 36.374 5.612 1.00 6.90 ATOM 34 N PRO 6 7.654 37.842 4.060 1.00 7.80 ATOM 35 CA PRO 6 6.295 37.296 3.962 1.00 7.80 ATOM 36 C PRO 6 6.183 36.014 3.114 1.00 7.80 ATOM 37 O PRO 6 5.406 35.121 3.458 1.00 7.80 ATOM 38 CB PRO 6 5.460 38.438 3.374 1.00 8.30 ATOM 39 CG PRO 6 6.460 39.231 2.533 1.00 8.30 ATOM 40 CD PRO 6 7.770 39.083 3.303 1.00 8.30 ATOM 41 N TRP 7 6.951 35.886 2.022 1.00 7.30 ATOM 42 CA TRP 7 6.810 34.815 1.011 1.00 7.30 ATOM 43 C TRP 7 7.515 33.498 1.387 1.00 7.30 ATOM 44 O TRP 7 8.192 32.861 0.579 1.00 7.30 ATOM 45 CB TRP 7 7.168 35.357 -0.384 1.00 7.80 ATOM 46 CG TRP 7 6.365 36.560 -0.783 1.00 7.80 ATOM 47 CD1 TRP 7 6.855 37.802 -1.004 1.00 7.80 ATOM 48 CD2 TRP 7 4.917 36.664 -0.983 1.00 7.80 ATOM 49 NE1 TRP 7 5.817 38.668 -1.292 1.00 7.80 ATOM 50 CE2 TRP 7 4.598 38.025 -1.277 1.00 7.80 ATOM 51 CE3 TRP 7 3.837 35.752 -0.929 1.00 7.80 ATOM 52 CZ2 TRP 7 3.280 38.463 -1.482 1.00 7.80 ATOM 53 CZ3 TRP 7 2.511 36.179 -1.142 1.00 7.80 ATOM 54 CH2 TRP 7 2.229 37.531 -1.412 1.00 7.80 ATOM 55 N VAL 8 7.315 33.074 2.635 1.00 5.90 ATOM 56 CA VAL 8 7.837 31.852 3.286 1.00 5.90 ATOM 57 C VAL 8 6.856 30.681 3.066 1.00 5.90 ATOM 58 O VAL 8 6.529 29.916 3.969 1.00 5.90 ATOM 59 CB VAL 8 8.154 32.195 4.767 1.00 5.70 ATOM 60 CG1 VAL 8 8.717 31.060 5.639 1.00 5.70 ATOM 61 CG2 VAL 8 9.200 33.321 4.793 1.00 5.70 ATOM 62 N GLY 9 6.289 30.588 1.857 1.00 6.90 ATOM 63 CA GLY 9 5.143 29.721 1.533 1.00 6.90 ATOM 64 C GLY 9 3.847 30.329 2.091 1.00 6.90 ATOM 65 O GLY 9 2.965 30.743 1.336 1.00 6.90 ATOM 66 N SER 10 3.781 30.453 3.419 1.00 6.40 ATOM 67 CA SER 10 2.780 31.207 4.183 1.00 6.40 ATOM 68 C SER 10 3.393 31.631 5.524 1.00 6.40 ATOM 69 O SER 10 3.929 30.795 6.252 1.00 6.40 ATOM 70 CB SER 10 1.516 30.369 4.381 1.00 6.30 ATOM 71 OG SER 10 0.524 31.138 5.039 1.00 6.30 ATOM 72 N SER 11 3.353 32.925 5.860 1.00 6.50 ATOM 73 CA SER 11 4.105 33.511 6.988 1.00 6.50 ATOM 74 C SER 11 3.780 32.921 8.370 1.00 6.50 ATOM 75 O SER 11 4.627 32.973 9.264 1.00 6.50 ATOM 76 CB SER 11 3.907 35.032 7.008 1.00 6.90 ATOM 77 OG SER 11 2.539 35.362 7.207 1.00 6.90 ATOM 78 N TYR 12 2.613 32.296 8.557 1.00 6.00 ATOM 79 CA TYR 12 2.216 31.665 9.823 1.00 6.00 ATOM 80 C TYR 12 3.129 30.496 10.259 1.00 6.00 ATOM 81 O TYR 12 3.248 30.237 11.459 1.00 6.00 ATOM 82 CB TYR 12 0.753 31.205 9.726 1.00 7.00 ATOM 83 CG TYR 12 -0.231 32.311 9.379 1.00 7.00 ATOM 84 CD1 TYR 12 -0.778 32.391 8.084 1.00 7.00 ATOM 85 CD2 TYR 12 -0.590 33.268 10.349 1.00 7.00 ATOM 86 CE1 TYR 12 -1.672 33.427 7.751 1.00 7.00 ATOM 87 CE2 TYR 12 -1.489 34.304 10.023 1.00 7.00 ATOM 88 CZ TYR 12 -2.031 34.389 8.721 1.00 7.00 ATOM 89 OH TYR 12 -2.897 35.395 8.413 1.00 7.00 ATOM 90 N VAL 13 3.814 29.813 9.326 1.00 5.10 ATOM 91 CA VAL 13 4.754 28.710 9.654 1.00 5.10 ATOM 92 C VAL 13 6.093 29.201 10.225 1.00 5.10 ATOM 93 O VAL 13 6.854 28.417 10.796 1.00 5.10 ATOM 94 CB VAL 13 5.002 27.756 8.460 1.00 4.90 ATOM 95 CG1 VAL 13 3.699 27.375 7.744 1.00 4.90 ATOM 96 CG2 VAL 13 6.012 28.286 7.432 1.00 4.90 ATOM 97 N ALA 14 6.399 30.496 10.084 1.00 5.40 ATOM 98 CA ALA 14 7.679 31.091 10.474 1.00 5.40 ATOM 99 C ALA 14 7.902 31.209 11.994 1.00 5.40 ATOM 100 O ALA 14 8.978 31.620 12.426 1.00 5.40 ATOM 101 CB ALA 14 7.812 32.447 9.788 1.00 5.50 ATOM 102 N GLU 15 6.931 30.795 12.814 1.00 5.60 ATOM 103 CA GLU 15 7.068 30.635 14.271 1.00 5.60 ATOM 104 C GLU 15 8.273 29.742 14.647 1.00 5.60 ATOM 105 O GLU 15 8.915 29.959 15.679 1.00 5.60 ATOM 106 CB GLU 15 5.734 30.061 14.784 1.00 6.50 ATOM 107 CG GLU 15 5.638 29.944 16.311 1.00 6.50 ATOM 108 CD GLU 15 4.229 29.548 16.805 1.00 6.50 ATOM 109 OE1 GLU 15 3.436 28.933 16.048 1.00 6.50 ATOM 110 OE2 GLU 15 3.904 29.839 17.982 1.00 6.50 ATOM 111 N THR 16 8.642 28.805 13.759 1.00 4.40 ATOM 112 CA THR 16 9.857 27.967 13.833 1.00 4.40 ATOM 113 C THR 16 11.171 28.759 13.779 1.00 4.40 ATOM 114 O THR 16 12.138 28.353 14.421 1.00 4.40 ATOM 115 CB THR 16 9.878 26.919 12.703 1.00 4.40 ATOM 116 OG1 THR 16 9.735 27.516 11.430 1.00 4.40 ATOM 117 CG2 THR 16 8.780 25.869 12.854 1.00 4.40 ATOM 118 N GLY 17 11.220 29.916 13.109 1.00 4.20 ATOM 119 CA GLY 17 12.424 30.755 12.989 1.00 4.20 ATOM 120 C GLY 17 12.963 31.258 14.335 1.00 4.20 ATOM 121 O GLY 17 14.171 31.406 14.509 1.00 4.20 ATOM 122 N GLN 18 12.093 31.399 15.339 1.00 4.70 ATOM 123 CA GLN 18 12.471 31.717 16.726 1.00 4.70 ATOM 124 C GLN 18 13.332 30.611 17.370 1.00 4.70 ATOM 125 O GLN 18 14.212 30.899 18.182 1.00 4.70 ATOM 126 CB GLN 18 11.197 31.923 17.560 1.00 5.40 ATOM 127 CG GLN 18 10.291 33.056 17.040 1.00 5.40 ATOM 128 CD GLN 18 8.940 33.080 17.750 1.00 5.40 ATOM 129 OE1 GLN 18 8.552 34.054 18.383 1.00 5.40 ATOM 130 NE2 GLN 18 8.180 32.006 17.694 1.00 5.40 ATOM 131 N ASN 19 13.121 29.349 16.974 1.00 4.40 ATOM 132 CA ASN 19 13.940 28.200 17.378 1.00 4.40 ATOM 133 C ASN 19 15.194 28.024 16.500 1.00 4.40 ATOM 134 O ASN 19 16.101 27.275 16.853 1.00 4.40 ATOM 135 CB ASN 19 13.056 26.938 17.392 1.00 4.60 ATOM 136 CG ASN 19 11.857 27.062 18.325 1.00 4.60 ATOM 137 OD1 ASN 19 11.937 27.591 19.426 1.00 4.60 ATOM 138 ND2 ASN 19 10.702 26.582 17.921 1.00 4.60 ATOM 139 N TRP 20 15.277 28.718 15.357 1.00 4.00 ATOM 140 CA TRP 20 16.495 28.793 14.539 1.00 4.00 ATOM 141 C TRP 20 17.409 29.932 15.025 1.00 4.00 ATOM 142 O TRP 20 18.628 29.824 14.941 1.00 4.00 ATOM 143 CB TRP 20 16.144 28.919 13.049 1.00 3.80 ATOM 144 CG TRP 20 15.253 27.882 12.413 1.00 3.80 ATOM 145 CD1 TRP 20 14.569 26.902 13.047 1.00 3.80 ATOM 146 CD2 TRP 20 14.930 27.703 10.991 1.00 3.80 ATOM 147 NE1 TRP 20 13.781 26.216 12.153 1.00 3.80 ATOM 148 CE2 TRP 20 13.933 26.689 10.874 1.00 3.80 ATOM 149 CE3 TRP 20 15.403 28.258 9.779 1.00 3.80 ATOM 150 CZ2 TRP 20 13.370 26.301 9.652 1.00 3.80 ATOM 151 CZ3 TRP 20 14.888 27.836 8.535 1.00 3.80 ATOM 152 CH2 TRP 20 13.866 26.873 8.470 1.00 3.80 ATOM 153 N ALA 21 16.854 30.984 15.637 1.00 4.30 ATOM 154 CA ALA 21 17.627 32.008 16.347 1.00 4.30 ATOM 155 C ALA 21 18.414 31.424 17.544 1.00 4.30 ATOM 156 O ALA 21 19.505 31.903 17.862 1.00 4.30 ATOM 157 CB ALA 21 16.660 33.114 16.789 1.00 4.30 ATOM 158 N SER 22 17.909 30.355 18.178 1.00 4.60 ATOM 159 CA SER 22 18.636 29.568 19.193 1.00 4.60 ATOM 160 C SER 22 19.546 28.476 18.605 1.00 4.60 ATOM 161 O SER 22 20.353 27.903 19.341 1.00 4.60 ATOM 162 CB SER 22 17.673 29.016 20.250 1.00 4.90 ATOM 163 OG SER 22 16.718 28.141 19.681 1.00 4.90 ATOM 164 N LEU 23 19.521 28.209 17.291 1.00 4.30 ATOM 165 CA LEU 23 20.568 27.389 16.659 1.00 4.30 ATOM 166 C LEU 23 21.895 28.161 16.660 1.00 4.30 ATOM 167 O LEU 23 22.920 27.566 16.967 1.00 4.30 ATOM 168 CB LEU 23 20.186 26.914 15.245 1.00 4.40 ATOM 169 CG LEU 23 19.109 25.817 15.223 1.00 4.40 ATOM 170 CD1 LEU 23 18.624 25.591 13.795 1.00 4.40 ATOM 171 CD2 LEU 23 19.660 24.481 15.727 1.00 4.40 ATOM 172 N ALA 24 21.875 29.492 16.495 1.00 4.10 ATOM 173 CA ALA 24 23.060 30.333 16.696 1.00 4.10 ATOM 174 C ALA 24 23.633 30.234 18.126 1.00 4.10 ATOM 175 O ALA 24 24.850 30.246 18.306 1.00 4.10 ATOM 176 CB ALA 24 22.719 31.776 16.313 1.00 4.20 ATOM 177 N ALA 25 22.782 30.060 19.147 1.00 4.80 ATOM 178 CA ALA 25 23.233 29.762 20.511 1.00 4.80 ATOM 179 C ALA 25 23.840 28.345 20.626 1.00 4.80 ATOM 180 O ALA 25 24.912 28.176 21.206 1.00 4.80 ATOM 181 CB ALA 25 22.063 29.971 21.481 1.00 4.80 ATOM 182 N ASN 26 23.209 27.328 20.023 1.00 5.20 ATOM 183 CA ASN 26 23.734 25.953 19.985 1.00 5.20 ATOM 184 C ASN 26 25.006 25.802 19.121 1.00 5.20 ATOM 185 O ASN 26 25.825 24.931 19.393 1.00 5.20 ATOM 186 CB ASN 26 22.619 24.980 19.557 1.00 5.60 ATOM 187 CG ASN 26 21.656 24.676 20.695 1.00 5.60 ATOM 188 OD1 ASN 26 21.862 23.759 21.476 1.00 5.60 ATOM 189 ND2 ASN 26 20.584 25.422 20.841 1.00 5.60 ATOM 190 N GLU 27 25.252 26.680 18.149 1.00 4.90 ATOM 191 CA GLU 27 26.516 26.745 17.395 1.00 4.90 ATOM 192 C GLU 27 27.722 27.106 18.288 1.00 4.90 ATOM 193 O GLU 27 28.853 26.745 17.971 1.00 4.90 ATOM 194 CB GLU 27 26.387 27.743 16.233 1.00 5.30 ATOM 195 CG GLU 27 25.548 27.207 15.061 1.00 5.30 ATOM 196 CD GLU 27 24.837 28.340 14.286 1.00 5.30 ATOM 197 OE1 GLU 27 25.449 29.415 14.061 1.00 5.30 ATOM 198 OE2 GLU 27 23.660 28.150 13.892 1.00 5.30 ATOM 199 N LEU 28 27.506 27.732 19.453 1.00 5.30 ATOM 200 CA LEU 28 28.561 27.910 20.461 1.00 5.30 ATOM 201 C LEU 28 28.933 26.588 21.166 1.00 5.30 ATOM 202 O LEU 28 30.015 26.476 21.739 1.00 5.30 ATOM 203 CB LEU 28 28.156 28.993 21.477 1.00 5.20 ATOM 204 CG LEU 28 27.781 30.356 20.860 1.00 5.20 ATOM 205 CD1 LEU 28 27.353 31.319 21.967 1.00 5.20 ATOM 206 CD2 LEU 28 28.945 30.993 20.095 1.00 5.20 ATOM 207 N ARG 29 28.085 25.547 21.101 1.00 6.40 ATOM 208 CA ARG 29 28.439 24.199 21.585 1.00 6.40 ATOM 209 C ARG 29 29.421 23.490 20.651 1.00 6.40 ATOM 210 O ARG 29 30.256 22.740 21.150 1.00 6.40 ATOM 211 CB ARG 29 27.181 23.342 21.852 1.00 8.10 ATOM 212 CG ARG 29 26.179 23.965 22.844 1.00 8.10 ATOM 213 CD ARG 29 26.839 24.333 24.179 1.00 8.10 ATOM 214 NE ARG 29 25.862 24.765 25.195 1.00 8.10 ATOM 215 CZ ARG 29 26.157 25.143 26.427 1.00 8.10 ATOM 216 NH1 ARG 29 25.212 25.473 27.261 1.00 8.10 ATOM 217 NH2 ARG 29 27.385 25.199 26.859 1.00 8.10 ATOM 218 N VAL 30 29.390 23.745 19.337 1.00 6.40 ATOM 219 CA VAL 30 30.361 23.151 18.389 1.00 6.40 ATOM 220 C VAL 30 31.731 23.846 18.384 1.00 6.40 ATOM 221 O VAL 30 32.682 23.268 17.864 1.00 6.40 ATOM 222 CB VAL 30 29.813 22.978 16.956 1.00 6.30 ATOM 223 CG1 VAL 30 28.515 22.164 16.975 1.00 6.30 ATOM 224 CG2 VAL 30 29.567 24.275 16.184 1.00 6.30 ATOM 225 N THR 31 31.864 25.039 18.983 1.00 6.70 ATOM 226 CA THR 31 33.168 25.688 19.251 1.00 6.70 ATOM 227 C THR 31 33.745 25.297 20.627 1.00 6.70 ATOM 228 O THR 31 34.965 25.298 20.800 1.00 6.70 ATOM 229 CB THR 31 33.082 27.222 19.146 1.00 7.00 ATOM 230 OG1 THR 31 32.129 27.741 20.045 1.00 7.00 ATOM 231 CG2 THR 31 32.719 27.718 17.745 1.00 7.00 ATOM 232 N GLU 32 32.903 24.918 21.600 1.00 8.10 ATOM 233 CA GLU 32 33.312 24.414 22.931 1.00 8.10 ATOM 234 C GLU 32 33.964 23.013 22.913 1.00 8.10 ATOM 235 O GLU 32 34.648 22.638 23.871 1.00 8.10 ATOM 236 CB GLU 32 32.090 24.382 23.868 1.00 8.60 ATOM 237 CG GLU 32 31.779 25.756 24.479 1.00 8.60 ATOM 238 CD GLU 32 30.486 25.776 25.326 1.00 8.60 ATOM 239 OE1 GLU 32 29.733 24.771 25.378 1.00 8.60 ATOM 240 OE2 GLU 32 30.215 26.816 25.975 1.00 8.60 ATOM 241 N ARG 33 33.769 22.247 21.833 1.00 8.90 ATOM 242 CA ARG 33 34.339 20.903 21.591 1.00 8.90 ATOM 243 C ARG 33 34.949 20.816 20.178 1.00 8.90 ATOM 244 O ARG 33 34.830 21.789 19.428 1.00 8.90 ATOM 245 CB ARG 33 33.245 19.851 21.883 1.00 10.50 ATOM 246 CG ARG 33 32.187 19.691 20.770 1.00 10.50 ATOM 247 CD ARG 33 30.870 19.125 21.317 1.00 10.50 ATOM 248 NE ARG 33 30.224 20.129 22.186 1.00 10.50 ATOM 249 CZ ARG 33 29.761 19.986 23.413 1.00 10.50 ATOM 250 NH1 ARG 33 29.448 21.043 24.107 1.00 10.50 ATOM 251 NH2 ARG 33 29.615 18.823 23.977 1.00 10.50 ATOM 252 N PRO 34 35.588 19.701 19.774 1.00 8.50 ATOM 253 CA PRO 34 36.004 19.509 18.386 1.00 8.50 ATOM 254 C PRO 34 34.814 19.669 17.425 1.00 8.50 ATOM 255 O PRO 34 33.760 19.057 17.623 1.00 8.50 ATOM 256 CB PRO 34 36.623 18.107 18.326 1.00 9.10 ATOM 257 CG PRO 34 37.108 17.888 19.759 1.00 9.10 ATOM 258 CD PRO 34 36.020 18.574 20.584 1.00 9.10 ATOM 259 N PHE 35 34.979 20.508 16.398 1.00 7.30 ATOM 260 CA PHE 35 33.947 20.798 15.396 1.00 7.30 ATOM 261 C PHE 35 33.432 19.486 14.769 1.00 7.30 ATOM 262 O PHE 35 34.238 18.698 14.264 1.00 7.30 ATOM 263 CB PHE 35 34.548 21.739 14.335 1.00 8.60 ATOM 264 CG PHE 35 34.944 23.120 14.836 1.00 8.60 ATOM 265 CD1 PHE 35 36.257 23.374 15.286 1.00 8.60 ATOM 266 CD2 PHE 35 34.002 24.167 14.823 1.00 8.60 ATOM 267 CE1 PHE 35 36.614 24.657 15.742 1.00 8.60 ATOM 268 CE2 PHE 35 34.366 25.453 15.259 1.00 8.60 ATOM 269 CZ PHE 35 35.668 25.697 15.729 1.00 8.60 ATOM 270 N TRP 36 32.115 19.234 14.787 1.00 6.70 ATOM 271 CA TRP 36 31.526 17.993 14.256 1.00 6.70 ATOM 272 C TRP 36 31.932 17.734 12.799 1.00 6.70 ATOM 273 O TRP 36 32.280 16.607 12.442 1.00 6.70 ATOM 274 CB TRP 36 29.992 18.023 14.339 1.00 7.50 ATOM 275 CG TRP 36 29.357 18.058 15.698 1.00 7.50 ATOM 276 CD1 TRP 36 28.333 18.869 16.046 1.00 7.50 ATOM 277 CD2 TRP 36 29.572 17.180 16.851 1.00 7.50 ATOM 278 NE1 TRP 36 27.908 18.574 17.327 1.00 7.50 ATOM 279 CE2 TRP 36 28.637 17.539 17.871 1.00 7.50 ATOM 280 CE3 TRP 36 30.450 16.110 17.143 1.00 7.50 ATOM 281 CZ2 TRP 36 28.576 16.877 19.108 1.00 7.50 ATOM 282 CZ3 TRP 36 30.404 15.446 18.385 1.00 7.50 ATOM 283 CH2 TRP 36 29.470 15.826 19.366 1.00 7.50 ATOM 284 N ILE 37 31.962 18.785 11.974 1.00 6.10 ATOM 285 CA ILE 37 32.420 18.707 10.583 1.00 6.10 ATOM 286 C ILE 37 33.884 18.244 10.521 1.00 6.10 ATOM 287 O ILE 37 34.192 17.320 9.772 1.00 6.10 ATOM 288 CB ILE 37 32.152 20.062 9.882 1.00 6.50 ATOM 289 CG1 ILE 37 30.735 20.098 9.269 1.00 6.50 ATOM 290 CG2 ILE 37 33.149 20.383 8.755 1.00 6.50 ATOM 291 CD1 ILE 37 29.583 19.806 10.240 1.00 6.50 ATOM 292 N SER 38 34.774 18.811 11.345 1.00 6.20 ATOM 293 CA SER 38 36.190 18.410 11.399 1.00 6.20 ATOM 294 C SER 38 36.360 16.924 11.749 1.00 6.20 ATOM 295 O SER 38 37.126 16.210 11.094 1.00 6.20 ATOM 296 CB SER 38 36.954 19.277 12.406 1.00 6.50 ATOM 297 OG SER 38 38.349 19.046 12.288 1.00 6.50 ATOM 298 N SER 39 35.597 16.431 12.731 1.00 6.10 ATOM 299 CA SER 39 35.640 15.029 13.169 1.00 6.10 ATOM 300 C SER 39 35.190 14.037 12.087 1.00 6.10 ATOM 301 O SER 39 35.805 12.979 11.939 1.00 6.10 ATOM 302 CB SER 39 34.777 14.838 14.424 1.00 6.20 ATOM 303 OG SER 39 35.283 15.617 15.498 1.00 6.20 ATOM 304 N PHE 40 34.133 14.350 11.325 1.00 5.70 ATOM 305 CA PHE 40 33.518 13.396 10.385 1.00 5.70 ATOM 306 C PHE 40 34.188 13.374 8.989 1.00 5.70 ATOM 307 O PHE 40 33.934 12.459 8.205 1.00 5.70 ATOM 308 CB PHE 40 31.997 13.635 10.310 1.00 5.90 ATOM 309 CG PHE 40 31.203 13.674 11.620 1.00 5.90 ATOM 310 CD1 PHE 40 31.745 13.285 12.867 1.00 5.90 ATOM 311 CD2 PHE 40 29.881 14.154 11.581 1.00 5.90 ATOM 312 CE1 PHE 40 31.019 13.490 14.056 1.00 5.90 ATOM 313 CE2 PHE 40 29.150 14.352 12.767 1.00 5.90 ATOM 314 CZ PHE 40 29.730 14.047 14.008 1.00 5.90 ATOM 315 N ILE 41 35.072 14.336 8.676 1.00 6.00 ATOM 316 CA ILE 41 35.867 14.379 7.427 1.00 6.00 ATOM 317 C ILE 41 36.913 13.250 7.343 1.00 6.00 ATOM 318 O ILE 41 37.057 12.616 6.299 1.00 6.00 ATOM 319 CB ILE 41 36.579 15.757 7.303 1.00 6.50 ATOM 320 CG1 ILE 41 35.582 16.868 6.913 1.00 6.50 ATOM 321 CG2 ILE 41 37.732 15.763 6.277 1.00 6.50 ATOM 322 CD1 ILE 41 36.094 18.282 7.225 1.00 6.50 ATOM 323 N GLY 42 37.658 13.015 8.429 1.00 6.90 ATOM 324 CA GLY 42 38.886 12.202 8.479 1.00 6.90 ATOM 325 C GLY 42 38.770 10.678 8.321 1.00 6.90 ATOM 326 O GLY 42 39.298 9.945 9.161 1.00 6.90 ATOM 327 N ARG 43 38.118 10.189 7.254 1.00 7.50 ATOM 328 CA ARG 43 37.998 8.749 6.922 1.00 7.50 ATOM 329 C ARG 43 38.166 8.433 5.419 1.00 7.50 ATOM 330 O ARG 43 37.608 7.467 4.895 1.00 7.50 ATOM 331 CB ARG 43 36.731 8.191 7.615 1.00 7.80 ATOM 332 CG ARG 43 36.504 6.669 7.553 1.00 7.80 ATOM 333 CD ARG 43 37.787 5.826 7.691 1.00 7.80 ATOM 334 NE ARG 43 37.527 4.388 7.497 1.00 7.80 ATOM 335 CZ ARG 43 37.252 3.777 6.356 1.00 7.80 ATOM 336 NH1 ARG 43 37.103 2.483 6.331 1.00 7.80 ATOM 337 NH2 ARG 43 37.123 4.424 5.227 1.00 7.80 ATOM 338 N SER 44 38.986 9.234 4.736 1.00 7.60 ATOM 339 CA SER 44 39.408 9.118 3.324 1.00 7.60 ATOM 340 C SER 44 38.288 9.269 2.287 1.00 7.60 ATOM 341 O SER 44 38.240 10.297 1.611 1.00 7.60 ATOM 342 CB SER 44 40.275 7.872 3.076 1.00 8.30 ATOM 343 OG SER 44 41.396 7.872 3.952 1.00 8.30 ATOM 344 N LYS 45 37.342 8.324 2.178 1.00 6.70 ATOM 345 CA LYS 45 36.175 8.465 1.277 1.00 6.70 ATOM 346 C LYS 45 35.291 9.655 1.678 1.00 6.70 ATOM 347 O LYS 45 34.748 10.340 0.816 1.00 6.70 ATOM 348 CB LYS 45 35.352 7.167 1.238 1.00 7.10 ATOM 349 CG LYS 45 36.113 6.001 0.584 1.00 7.10 ATOM 350 CD LYS 45 35.210 4.767 0.439 1.00 7.10 ATOM 351 CE LYS 45 35.985 3.599 -0.187 1.00 7.10 ATOM 352 NZ LYS 45 35.130 2.388 -0.336 1.00 7.10 TER END