####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS358_5-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS358_5-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 6 - 23 4.85 20.20 LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 4.92 18.37 LONGEST_CONTINUOUS_SEGMENT: 18 17 - 34 4.67 15.65 LONGEST_CONTINUOUS_SEGMENT: 18 18 - 35 4.55 15.06 LONGEST_CONTINUOUS_SEGMENT: 18 28 - 45 4.98 25.43 LCS_AVERAGE: 39.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 20 - 32 1.96 14.46 LCS_AVERAGE: 19.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.73 14.51 LCS_AVERAGE: 12.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 5 5 8 3 3 5 5 5 5 5 6 6 6 6 7 7 8 8 8 9 9 9 9 LCS_GDT V 3 V 3 5 5 8 3 4 5 5 5 5 5 6 6 6 6 6 6 8 8 8 9 9 9 9 LCS_GDT Q 4 Q 4 5 5 8 3 4 5 5 5 5 5 6 6 6 6 7 7 8 8 8 9 10 18 18 LCS_GDT G 5 G 5 5 5 17 3 4 5 5 5 5 5 6 6 6 6 13 14 16 18 18 20 21 21 23 LCS_GDT P 6 P 6 5 5 18 0 4 5 5 6 6 6 9 12 13 14 15 17 18 19 20 22 22 23 25 LCS_GDT W 7 W 7 3 4 18 0 3 3 5 6 6 9 11 12 13 14 15 17 18 19 22 22 25 26 28 LCS_GDT V 8 V 8 3 4 18 3 3 4 5 6 6 7 9 12 13 14 15 17 18 19 22 22 25 26 28 LCS_GDT G 9 G 9 3 4 18 3 3 4 5 6 12 13 15 15 16 16 17 17 19 19 22 24 26 27 28 LCS_GDT S 10 S 10 3 4 18 3 3 3 5 9 13 14 15 16 17 17 18 20 20 21 22 24 26 27 28 LCS_GDT S 11 S 11 3 4 18 3 3 3 4 5 10 12 14 14 17 18 19 20 20 21 22 24 26 27 28 LCS_GDT Y 12 Y 12 3 7 18 3 3 3 6 7 8 9 11 13 16 18 19 20 20 21 23 24 25 27 28 LCS_GDT V 13 V 13 5 7 18 4 5 5 6 7 8 10 11 12 15 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 14 A 14 5 8 18 4 5 5 6 7 8 9 11 12 14 16 19 20 21 21 23 24 24 25 27 LCS_GDT E 15 E 15 5 8 18 4 5 6 7 7 8 9 11 12 13 16 19 20 21 21 23 24 24 25 25 LCS_GDT T 16 T 16 5 8 18 4 5 6 7 7 8 10 11 12 13 15 19 20 21 21 22 24 25 26 28 LCS_GDT G 17 G 17 5 8 18 3 5 6 7 7 8 10 11 12 13 16 19 20 21 21 23 24 26 27 28 LCS_GDT Q 18 Q 18 4 8 18 3 4 6 7 7 8 10 12 13 16 18 19 20 21 21 23 24 26 27 28 LCS_GDT N 19 N 19 4 11 18 3 4 5 7 8 11 13 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT W 20 W 20 10 13 18 6 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 21 A 21 10 13 18 8 9 10 11 11 13 14 15 16 17 17 19 20 21 21 23 24 26 27 28 LCS_GDT S 22 S 22 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT L 23 L 23 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 24 A 24 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 25 A 25 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT N 26 N 26 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT E 27 E 27 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 20 21 23 24 26 27 28 LCS_GDT L 28 L 28 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 20 21 23 24 26 27 28 LCS_GDT R 29 R 29 10 13 18 3 4 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 25 26 28 LCS_GDT V 30 V 30 5 13 18 3 4 7 10 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT T 31 T 31 5 13 18 3 4 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT E 32 E 32 5 13 18 3 4 5 8 10 11 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT R 33 R 33 4 8 18 3 3 5 6 7 9 13 14 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT P 34 P 34 4 9 18 1 3 7 7 9 9 10 10 13 14 16 19 20 21 21 23 24 26 27 28 LCS_GDT F 35 F 35 4 9 18 3 3 7 7 9 9 10 10 13 14 15 17 20 21 21 23 24 26 27 28 LCS_GDT W 36 W 36 5 9 18 3 4 6 7 9 9 10 10 13 14 15 15 16 18 20 22 24 26 27 28 LCS_GDT I 37 I 37 5 9 18 3 4 7 7 9 9 10 10 12 12 15 15 17 18 20 22 24 26 27 28 LCS_GDT S 38 S 38 5 9 18 3 4 7 7 9 9 10 10 12 14 15 15 17 18 20 21 24 26 27 28 LCS_GDT S 39 S 39 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 23 26 27 27 LCS_GDT F 40 F 40 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 22 24 25 26 LCS_GDT I 41 I 41 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 22 24 25 26 LCS_GDT G 42 G 42 5 9 18 3 4 5 7 9 9 10 10 13 14 15 15 16 18 19 21 22 23 25 26 LCS_GDT R 43 R 43 3 6 18 3 3 4 6 7 8 9 10 13 14 15 15 16 16 17 18 21 22 23 26 LCS_GDT S 44 S 44 3 6 18 3 3 4 5 7 8 9 10 13 14 15 15 16 16 17 17 18 18 20 20 LCS_GDT K 45 K 45 3 6 18 3 3 4 5 6 6 6 10 13 14 15 15 16 16 17 17 18 18 20 20 LCS_AVERAGE LCS_A: 24.00 ( 12.76 19.94 39.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 GDT PERCENT_AT 18.18 20.45 22.73 25.00 25.00 29.55 31.82 34.09 36.36 38.64 40.91 43.18 45.45 47.73 47.73 52.27 54.55 59.09 61.36 63.64 GDT RMS_LOCAL 0.30 0.37 0.64 0.90 0.90 1.93 2.23 2.36 2.78 3.08 3.67 3.82 4.53 4.69 4.29 5.30 5.47 6.69 6.89 7.20 GDT RMS_ALL_AT 14.51 14.47 14.39 14.43 14.43 14.17 14.17 13.86 14.06 14.22 15.13 15.05 19.07 19.00 14.91 17.57 17.94 12.97 12.81 12.71 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 29.040 0 0.584 0.581 30.620 0.000 0.000 - LGA V 3 V 3 27.100 0 0.069 0.093 30.246 0.000 0.000 27.870 LGA Q 4 Q 4 22.759 0 0.132 0.381 24.304 0.000 0.000 20.956 LGA G 5 G 5 19.444 0 0.064 0.064 20.733 0.000 0.000 - LGA P 6 P 6 16.263 0 0.660 0.542 17.835 0.000 0.000 17.788 LGA W 7 W 7 9.865 0 0.464 1.299 12.223 0.000 0.130 6.860 LGA V 8 V 8 8.947 0 0.577 0.573 13.263 0.000 0.000 10.289 LGA G 9 G 9 3.277 0 0.545 0.545 4.873 15.909 15.909 - LGA S 10 S 10 3.498 0 0.605 0.874 6.964 17.273 11.818 6.925 LGA S 11 S 11 9.207 0 0.577 0.499 11.634 0.000 0.000 11.634 LGA Y 12 Y 12 10.478 0 0.598 1.136 13.606 0.000 0.000 10.426 LGA V 13 V 13 11.940 0 0.650 0.936 15.869 0.000 0.000 12.456 LGA A 14 A 14 18.202 0 0.124 0.128 20.706 0.000 0.000 - LGA E 15 E 15 21.479 0 0.076 1.455 25.996 0.000 0.000 25.996 LGA T 16 T 16 18.336 0 0.647 0.578 18.998 0.000 0.000 14.517 LGA G 17 G 17 15.714 0 0.717 0.717 16.804 0.000 0.000 - LGA Q 18 Q 18 8.626 0 0.171 1.057 13.987 0.000 0.000 10.442 LGA N 19 N 19 4.331 0 0.174 1.121 7.308 9.545 5.455 7.287 LGA W 20 W 20 2.497 0 0.635 1.020 8.525 41.364 11.948 8.469 LGA A 21 A 21 2.193 0 0.056 0.054 2.584 44.545 41.091 - LGA S 22 S 22 1.840 0 0.037 0.058 2.300 51.364 46.970 2.300 LGA L 23 L 23 1.623 0 0.017 0.997 5.312 62.273 39.545 5.312 LGA A 24 A 24 1.405 0 0.037 0.035 1.776 61.818 59.636 - LGA A 25 A 25 0.820 0 0.024 0.023 1.082 86.818 85.818 - LGA N 26 N 26 0.478 0 0.017 0.070 1.501 90.909 80.455 0.951 LGA E 27 E 27 0.693 0 0.067 0.722 2.566 82.273 61.414 2.151 LGA L 28 L 28 0.858 0 0.148 1.171 4.678 81.818 64.318 4.678 LGA R 29 R 29 2.172 0 0.605 1.545 12.438 62.727 22.975 11.692 LGA V 30 V 30 3.783 0 0.497 0.555 7.151 28.636 16.364 7.151 LGA T 31 T 31 1.349 0 0.255 1.101 5.569 46.818 31.429 4.361 LGA E 32 E 32 5.931 0 0.610 1.349 10.562 2.727 1.212 10.562 LGA R 33 R 33 8.598 0 0.140 1.268 10.366 0.000 0.000 9.650 LGA P 34 P 34 13.603 0 0.340 0.343 14.185 0.000 0.000 13.867 LGA F 35 F 35 15.413 0 0.297 1.161 19.133 0.000 0.000 15.168 LGA W 36 W 36 18.354 0 0.187 1.122 24.958 0.000 0.000 24.226 LGA I 37 I 37 17.133 0 0.097 0.899 18.088 0.000 0.000 14.560 LGA S 38 S 38 19.704 0 0.097 0.643 20.170 0.000 0.000 18.436 LGA S 39 S 39 19.471 0 0.083 0.106 19.557 0.000 0.000 18.507 LGA F 40 F 40 18.966 0 0.148 1.013 21.773 0.000 0.000 21.773 LGA I 41 I 41 19.384 0 0.177 1.383 21.568 0.000 0.000 21.568 LGA G 42 G 42 18.544 0 0.268 0.268 18.582 0.000 0.000 - LGA R 43 R 43 15.582 0 0.042 1.372 19.754 0.000 0.000 19.754 LGA S 44 S 44 14.252 0 0.072 0.076 14.324 0.000 0.000 14.324 LGA K 45 K 45 14.476 0 0.649 1.041 19.164 0.000 0.000 19.164 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 12.364 12.191 13.099 17.882 13.557 4.727 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 15 2.36 32.955 29.815 0.609 LGA_LOCAL RMSD: 2.363 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.859 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 12.364 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.754302 * X + 0.589130 * Y + -0.289750 * Z + 25.543320 Y_new = -0.537775 * X + -0.301273 * Y + 0.787421 * Z + 46.924431 Z_new = 0.376599 * X + 0.749774 * Y + 0.544070 * Z + -39.123558 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.522232 -0.386123 0.943065 [DEG: -144.5132 -22.1232 54.0336 ] ZXZ: -2.788996 0.995516 0.465473 [DEG: -159.7977 57.0389 26.6696 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS358_5-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS358_5-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 15 2.36 29.815 12.36 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS358_5-D1 PFRMAT TS TARGET T0953s2 MODEL 5 PARENT N/A ATOM 748 N ALA 2 19.234 16.504 -3.796 1.00 1.16 ATOM 749 CA ALA 2 19.323 15.523 -4.925 1.00 1.16 ATOM 750 C ALA 2 18.228 15.860 -5.933 1.00 1.16 ATOM 751 O ALA 2 18.493 15.930 -7.132 1.00 1.16 ATOM 752 CB ALA 2 19.169 14.104 -4.405 1.00 1.16 ATOM 754 N VAL 3 16.968 16.080 -5.398 1.00 1.07 ATOM 755 CA VAL 3 15.736 16.332 -6.124 1.00 1.07 ATOM 756 C VAL 3 14.793 17.427 -5.642 1.00 1.07 ATOM 757 O VAL 3 14.537 17.537 -4.446 1.00 1.07 ATOM 758 CB VAL 3 14.898 14.998 -6.239 1.00 1.07 ATOM 759 CG1 VAL 3 13.624 15.214 -7.042 1.00 1.07 ATOM 760 CG2 VAL 3 15.704 13.892 -6.904 1.00 1.07 ATOM 762 N GLN 4 14.257 18.236 -6.500 1.00 1.01 ATOM 763 CA GLN 4 14.043 19.589 -5.983 1.00 1.01 ATOM 764 C GLN 4 12.553 19.741 -5.788 1.00 1.01 ATOM 765 O GLN 4 11.797 18.814 -6.070 1.00 1.01 ATOM 766 CB GLN 4 14.577 20.627 -6.941 1.00 1.01 ATOM 767 CD GLN 4 16.588 21.589 -8.126 1.00 1.01 ATOM 768 NE2 GLN 4 17.888 21.551 -8.399 1.00 1.01 ATOM 769 OE1 GLN 4 15.815 22.373 -8.676 1.00 1.01 ATOM 770 CG GLN 4 16.091 20.605 -7.087 1.00 1.01 ATOM 774 N GLY 5 12.102 20.954 -5.295 1.00 0.95 ATOM 775 CA GLY 5 11.236 21.018 -4.120 1.00 0.95 ATOM 776 C GLY 5 9.914 21.700 -4.334 1.00 0.95 ATOM 777 O GLY 5 9.638 22.178 -5.433 1.00 0.95 ATOM 779 N PRO 6 9.132 21.695 -3.164 1.00 0.94 ATOM 780 CA PRO 6 7.939 22.480 -3.132 1.00 0.94 ATOM 781 C PRO 6 7.449 23.059 -1.758 1.00 0.94 ATOM 782 O PRO 6 7.786 22.520 -0.707 1.00 0.94 ATOM 783 CB PRO 6 6.869 21.517 -3.722 1.00 0.94 ATOM 784 CD PRO 6 8.901 20.343 -3.383 1.00 0.94 ATOM 785 CG PRO 6 7.396 20.161 -3.307 1.00 0.94 ATOM 786 N TRP 7 6.629 24.181 -1.831 1.00 0.94 ATOM 787 CA TRP 7 6.538 25.059 -0.578 1.00 0.94 ATOM 788 C TRP 7 5.366 26.003 -0.593 1.00 0.94 ATOM 789 O TRP 7 4.679 26.117 -1.605 1.00 0.94 ATOM 790 CB TRP 7 7.860 25.821 -0.421 1.00 0.94 ATOM 791 CD1 TRP 7 7.716 28.118 -1.547 1.00 0.94 ATOM 792 CD2 TRP 7 8.808 26.570 -2.745 1.00 0.94 ATOM 793 CE2 TRP 7 8.800 27.778 -3.470 1.00 0.94 ATOM 794 CE3 TRP 7 9.439 25.453 -3.298 1.00 0.94 ATOM 796 NE1 TRP 7 8.126 28.710 -2.717 1.00 0.94 ATOM 797 CG TRP 7 8.108 26.811 -1.518 1.00 0.94 ATOM 798 CH2 TRP 7 10.011 26.792 -5.244 1.00 0.94 ATOM 799 CZ2 TRP 7 9.399 27.902 -4.724 1.00 0.94 ATOM 800 CZ3 TRP 7 10.031 25.575 -4.540 1.00 0.94 ATOM 802 N VAL 8 5.222 26.651 0.596 1.00 0.95 ATOM 803 CA VAL 8 4.180 27.660 1.070 1.00 0.95 ATOM 804 C VAL 8 4.617 28.658 2.088 1.00 0.95 ATOM 805 O VAL 8 4.663 28.345 3.277 1.00 0.95 ATOM 806 CB VAL 8 2.933 26.882 1.601 1.00 0.95 ATOM 807 CG1 VAL 8 1.851 27.867 2.021 1.00 0.95 ATOM 808 CG2 VAL 8 2.351 25.948 0.552 1.00 0.95 ATOM 810 N GLY 9 4.918 29.814 1.646 1.00 0.99 ATOM 811 CA GLY 9 4.605 31.055 2.255 1.00 0.99 ATOM 812 C GLY 9 3.240 31.091 2.759 1.00 0.99 ATOM 813 O GLY 9 2.307 30.738 2.039 1.00 0.99 ATOM 815 N SER 10 3.174 31.533 4.009 1.00 1.01 ATOM 816 CA SER 10 2.047 31.203 4.974 1.00 1.01 ATOM 817 C SER 10 0.929 32.246 4.488 1.00 1.01 ATOM 818 O SER 10 1.003 33.427 4.819 1.00 1.01 ATOM 819 CB SER 10 2.425 31.456 6.369 1.00 1.01 ATOM 821 OG SER 10 1.297 31.304 7.212 1.00 1.01 ATOM 823 N SER 11 -0.073 31.848 3.743 1.00 1.00 ATOM 824 CA SER 11 -1.281 32.629 3.946 1.00 1.00 ATOM 825 C SER 11 -1.285 34.071 3.289 1.00 1.00 ATOM 826 O SER 11 -0.724 35.007 3.853 1.00 1.00 ATOM 827 CB SER 11 -1.576 32.785 5.455 1.00 1.00 ATOM 829 OG SER 11 -2.753 33.537 5.694 1.00 1.00 ATOM 831 N TYR 12 -1.874 34.296 2.165 1.00 0.98 ATOM 832 CA TYR 12 -1.919 35.768 1.759 1.00 0.98 ATOM 833 C TYR 12 -3.346 36.337 2.209 1.00 0.98 ATOM 834 O TYR 12 -4.343 36.109 1.528 1.00 0.98 ATOM 835 CB TYR 12 -1.744 35.921 0.283 1.00 0.98 ATOM 836 CD1 TYR 12 -0.120 34.252 -0.689 1.00 0.98 ATOM 837 CD2 TYR 12 0.693 36.424 -0.131 1.00 0.98 ATOM 838 CE1 TYR 12 1.139 33.882 -1.121 1.00 0.98 ATOM 839 CE2 TYR 12 1.959 36.072 -0.559 1.00 0.98 ATOM 840 CG TYR 12 -0.363 35.524 -0.188 1.00 0.98 ATOM 841 OH TYR 12 3.436 34.440 -1.483 1.00 0.98 ATOM 842 CZ TYR 12 2.179 34.801 -1.054 1.00 0.98 ATOM 845 N VAL 13 -3.328 37.064 3.359 1.00 0.98 ATOM 846 CA VAL 13 -4.262 36.688 4.467 1.00 0.98 ATOM 847 C VAL 13 -5.045 37.896 4.593 1.00 0.98 ATOM 848 O VAL 13 -4.532 38.990 4.363 1.00 0.98 ATOM 849 CB VAL 13 -3.510 36.352 5.725 1.00 0.98 ATOM 850 CG1 VAL 13 -2.672 37.520 6.224 1.00 0.98 ATOM 851 CG2 VAL 13 -4.522 35.993 6.801 1.00 0.98 ATOM 853 N ALA 14 -6.305 37.697 4.973 1.00 1.03 ATOM 854 CA ALA 14 -7.217 38.583 5.638 1.00 1.03 ATOM 855 C ALA 14 -8.689 38.497 5.280 1.00 1.03 ATOM 856 O ALA 14 -9.501 38.091 6.108 1.00 1.03 ATOM 857 CB ALA 14 -6.737 40.068 5.455 1.00 1.03 ATOM 859 N GLU 15 -8.988 38.900 3.988 1.00 1.05 ATOM 860 CA GLU 15 -10.252 38.814 3.278 1.00 1.05 ATOM 861 C GLU 15 -10.494 37.272 2.907 1.00 1.05 ATOM 862 O GLU 15 -11.635 36.854 2.722 1.00 1.05 ATOM 863 CB GLU 15 -10.254 39.633 2.015 1.00 1.05 ATOM 864 CD GLU 15 -10.252 41.956 1.023 1.00 1.05 ATOM 865 OE1 GLU 15 -10.115 41.365 -0.067 1.00 1.05 ATOM 866 OE2 GLU 15 -10.339 43.199 1.123 1.00 1.05 ATOM 867 CG GLU 15 -10.320 41.127 2.291 1.00 1.05 ATOM 869 N THR 16 -9.422 36.584 2.842 1.00 1.04 ATOM 870 CA THR 16 -9.245 35.124 2.670 1.00 1.04 ATOM 871 C THR 16 -9.120 34.285 3.839 1.00 1.04 ATOM 872 O THR 16 -9.243 34.768 4.962 1.00 1.04 ATOM 873 CB THR 16 -8.011 34.877 1.711 1.00 1.04 ATOM 874 CG2 THR 16 -8.095 35.690 0.428 1.00 1.04 ATOM 876 OG1 THR 16 -6.827 35.258 2.424 1.00 1.04 ATOM 878 N GLY 17 -8.855 32.981 3.518 1.00 1.05 ATOM 879 CA GLY 17 -8.751 32.007 4.589 1.00 1.05 ATOM 880 C GLY 17 -7.558 32.292 5.407 1.00 1.05 ATOM 881 O GLY 17 -6.979 33.369 5.295 1.00 1.05 ATOM 883 N GLN 18 -7.245 31.237 6.222 1.00 1.04 ATOM 884 CA GLN 18 -6.709 31.476 7.582 1.00 1.04 ATOM 885 C GLN 18 -7.144 30.352 8.517 1.00 1.04 ATOM 886 O GLN 18 -8.278 30.349 8.991 1.00 1.04 ATOM 887 CB GLN 18 -7.185 32.823 8.108 1.00 1.04 ATOM 888 CD GLN 18 -9.120 34.305 8.767 1.00 1.04 ATOM 889 NE2 GLN 18 -9.611 35.123 7.843 1.00 1.04 ATOM 890 OE1 GLN 18 -9.011 34.625 9.951 1.00 1.04 ATOM 891 CG GLN 18 -8.690 32.932 8.291 1.00 1.04 ATOM 895 N ASN 19 -6.272 29.382 8.810 1.00 1.01 ATOM 896 CA ASN 19 -6.128 28.750 10.182 1.00 1.01 ATOM 897 C ASN 19 -4.754 29.109 10.820 1.00 1.01 ATOM 898 O ASN 19 -4.460 28.680 11.935 1.00 1.01 ATOM 899 CB ASN 19 -6.284 27.244 10.076 1.00 1.01 ATOM 900 ND2 ASN 19 -7.782 26.215 8.480 1.00 1.01 ATOM 901 OD1 ASN 19 -8.651 27.066 10.369 1.00 1.01 ATOM 902 CG ASN 19 -7.680 26.832 9.651 1.00 1.01 ATOM 906 N TRP 20 -3.934 29.937 10.032 1.00 0.98 ATOM 907 CA TRP 20 -2.500 29.659 10.022 1.00 0.98 ATOM 908 C TRP 20 -1.724 30.939 9.741 1.00 0.98 ATOM 909 O TRP 20 -0.586 31.077 10.185 1.00 0.98 ATOM 910 CB TRP 20 -2.166 28.597 8.980 1.00 0.98 ATOM 911 CD1 TRP 20 -3.006 30.195 7.164 1.00 0.98 ATOM 912 CD2 TRP 20 -2.120 28.292 6.380 1.00 0.98 ATOM 913 CE2 TRP 20 -2.541 29.076 5.287 1.00 0.98 ATOM 914 CE3 TRP 20 -1.530 27.050 6.132 1.00 0.98 ATOM 916 NE1 TRP 20 -3.080 30.236 5.793 1.00 0.98 ATOM 917 CG TRP 20 -2.428 29.027 7.570 1.00 0.98 ATOM 918 CH2 TRP 20 -1.810 27.438 3.750 1.00 0.98 ATOM 919 CZ2 TRP 20 -2.391 28.661 3.965 1.00 0.98 ATOM 920 CZ3 TRP 20 -1.383 26.636 4.822 1.00 0.98 ATOM 922 N ALA 21 -2.174 31.996 9.030 1.00 0.96 ATOM 923 CA ALA 21 -1.674 33.401 9.462 1.00 0.96 ATOM 924 C ALA 21 -2.570 34.067 10.505 1.00 0.96 ATOM 925 O ALA 21 -2.085 34.839 11.330 1.00 0.96 ATOM 926 CB ALA 21 -1.544 34.279 8.210 1.00 0.96 ATOM 928 N SER 22 -3.835 33.748 10.442 1.00 0.99 ATOM 929 CA SER 22 -4.768 34.257 11.452 1.00 0.99 ATOM 930 C SER 22 -4.258 33.760 12.792 1.00 0.99 ATOM 931 O SER 22 -4.242 34.514 13.763 1.00 0.99 ATOM 932 CB SER 22 -6.171 33.766 11.190 1.00 0.99 ATOM 934 OG SER 22 -6.266 32.354 11.273 1.00 0.99 ATOM 936 N LEU 23 -3.840 32.513 12.842 1.00 0.98 ATOM 937 CA LEU 23 -3.336 31.934 14.082 1.00 0.98 ATOM 938 C LEU 23 -1.990 32.518 14.521 1.00 0.98 ATOM 939 O LEU 23 -1.755 32.700 15.713 1.00 0.98 ATOM 940 CB LEU 23 -3.218 30.406 13.946 1.00 0.98 ATOM 941 CD1 LEU 23 -1.606 29.734 15.748 1.00 0.98 ATOM 942 CD2 LEU 23 -3.966 30.135 16.325 1.00 0.98 ATOM 943 CG LEU 23 -3.036 29.614 15.242 1.00 0.98 ATOM 945 N ALA 24 -1.090 32.826 13.580 1.00 0.96 ATOM 946 CA ALA 24 0.175 33.327 13.884 1.00 0.96 ATOM 947 C ALA 24 0.014 34.667 14.595 1.00 0.96 ATOM 948 O ALA 24 0.751 34.957 15.536 1.00 0.96 ATOM 949 CB ALA 24 1.044 33.507 12.633 1.00 0.96 ATOM 951 N ALA 25 -0.956 35.478 14.149 1.00 0.99 ATOM 952 CA ALA 25 -1.225 36.772 14.772 1.00 0.99 ATOM 953 C ALA 25 -1.726 36.611 16.221 1.00 0.99 ATOM 954 O ALA 25 -1.294 37.346 17.107 1.00 0.99 ATOM 955 CB ALA 25 -2.254 37.565 13.952 1.00 0.99 ATOM 957 N ASN 26 -2.619 35.656 16.439 1.00 1.02 ATOM 958 CA ASN 26 -3.130 35.395 17.820 1.00 1.02 ATOM 959 C ASN 26 -1.972 34.998 18.728 1.00 1.02 ATOM 960 O ASN 26 -1.909 35.437 19.874 1.00 1.02 ATOM 961 CB ASN 26 -4.189 34.307 17.788 1.00 1.02 ATOM 962 ND2 ASN 26 -6.341 33.853 16.781 1.00 1.02 ATOM 963 OD1 ASN 26 -5.762 35.992 17.151 1.00 1.02 ATOM 964 CG ASN 26 -5.504 34.790 17.211 1.00 1.02 ATOM 968 N GLU 27 -1.025 34.157 18.224 1.00 1.01 ATOM 969 CA GLU 27 0.174 33.703 19.025 1.00 1.01 ATOM 970 C GLU 27 1.092 34.899 19.121 1.00 1.01 ATOM 971 O GLU 27 1.758 35.085 20.138 1.00 1.01 ATOM 972 CB GLU 27 0.841 32.539 18.347 1.00 1.01 ATOM 973 CD GLU 27 1.639 31.421 20.467 1.00 1.01 ATOM 974 OE1 GLU 27 0.425 31.255 20.708 1.00 1.01 ATOM 975 OE2 GLU 27 2.544 31.124 21.275 1.00 1.01 ATOM 976 CG GLU 27 2.034 32.013 19.128 1.00 1.01 ATOM 978 N LEU 28 1.052 35.677 17.984 1.00 0.99 ATOM 979 CA LEU 28 1.919 36.777 18.061 1.00 0.99 ATOM 980 C LEU 28 1.219 38.199 18.161 1.00 0.99 ATOM 981 O LEU 28 1.836 39.159 18.620 1.00 0.99 ATOM 982 CB LEU 28 2.893 36.817 16.856 1.00 0.99 ATOM 983 CD1 LEU 28 3.776 34.537 17.421 1.00 0.99 ATOM 984 CD2 LEU 28 4.845 35.836 15.621 1.00 0.99 ATOM 985 CG LEU 28 4.142 35.941 16.966 1.00 0.99 ATOM 987 N ARG 29 -0.010 38.416 17.779 1.00 1.01 ATOM 988 CA ARG 29 -0.532 39.852 17.796 1.00 1.01 ATOM 989 C ARG 29 -1.190 40.086 19.245 1.00 1.01 ATOM 990 O ARG 29 -0.473 40.288 20.223 1.00 1.01 ATOM 991 CB ARG 29 -1.554 40.063 16.729 1.00 1.01 ATOM 992 CD ARG 29 -3.061 41.671 15.529 1.00 1.01 ATOM 994 NE ARG 29 -2.445 41.470 14.221 1.00 1.01 ATOM 995 CG ARG 29 -2.064 41.493 16.661 1.00 1.01 ATOM 996 NH1 ARG 29 -4.452 41.278 13.115 1.00 1.01 ATOM 997 NH2 ARG 29 -2.480 41.115 11.949 1.00 1.01 ATOM 1002 CZ ARG 29 -3.126 41.289 13.094 1.00 1.01 ATOM 1004 N VAL 30 -2.451 40.045 19.311 1.00 0.98 ATOM 1005 CA VAL 30 -3.405 40.886 20.043 1.00 0.98 ATOM 1006 C VAL 30 -4.506 41.390 18.904 1.00 0.98 ATOM 1007 O VAL 30 -5.434 40.653 18.575 1.00 0.98 ATOM 1008 CB VAL 30 -2.794 42.112 20.653 1.00 0.98 ATOM 1009 CG1 VAL 30 -3.862 43.034 21.223 1.00 0.98 ATOM 1010 CG2 VAL 30 -1.891 41.663 21.791 1.00 0.98 ATOM 1012 N THR 31 -4.340 42.594 18.374 1.00 1.00 ATOM 1013 CA THR 31 -5.256 43.609 18.146 1.00 1.00 ATOM 1014 C THR 31 -5.902 44.259 19.256 1.00 1.00 ATOM 1015 O THR 31 -5.696 45.450 19.478 1.00 1.00 ATOM 1016 CB THR 31 -6.390 43.098 17.143 1.00 1.00 ATOM 1017 CG2 THR 31 -7.330 44.224 16.740 1.00 1.00 ATOM 1019 OG1 THR 31 -5.814 42.529 15.961 1.00 1.00 ATOM 1021 N GLU 32 -6.680 43.458 19.953 1.00 1.00 ATOM 1022 CA GLU 32 -7.418 43.787 21.092 1.00 1.00 ATOM 1023 C GLU 32 -7.814 42.449 21.773 1.00 1.00 ATOM 1024 O GLU 32 -7.761 42.341 22.996 1.00 1.00 ATOM 1025 CB GLU 32 -8.670 44.579 20.772 1.00 1.00 ATOM 1026 CD GLU 32 -10.716 45.798 21.611 1.00 1.00 ATOM 1027 OE1 GLU 32 -10.913 46.064 20.407 1.00 1.00 ATOM 1028 OE2 GLU 32 -11.449 46.219 22.532 1.00 1.00 ATOM 1029 CG GLU 32 -9.533 44.923 21.974 1.00 1.00 ATOM 1031 N ARG 33 -8.197 41.452 20.955 1.00 1.01 ATOM 1032 CA ARG 33 -8.353 40.123 21.426 1.00 1.01 ATOM 1033 C ARG 33 -7.124 39.321 21.352 1.00 1.01 ATOM 1034 O ARG 33 -6.191 39.688 20.641 1.00 1.01 ATOM 1035 CB ARG 33 -9.499 39.416 20.651 1.00 1.01 ATOM 1036 CD ARG 33 -11.942 39.251 20.099 1.00 1.01 ATOM 1038 NE ARG 33 -13.246 39.901 20.161 1.00 1.01 ATOM 1039 CG ARG 33 -10.867 40.056 20.812 1.00 1.01 ATOM 1040 NH1 ARG 33 -14.291 38.310 18.872 1.00 1.01 ATOM 1041 NH2 ARG 33 -15.487 40.095 19.683 1.00 1.01 ATOM 1046 CZ ARG 33 -14.343 39.434 19.572 1.00 1.01 ATOM 1048 N PRO 34 -7.058 38.139 22.098 1.00 1.00 ATOM 1049 CA PRO 34 -5.835 37.221 22.156 1.00 1.00 ATOM 1050 C PRO 34 -4.428 37.850 22.583 1.00 1.00 ATOM 1051 O PRO 34 -3.690 38.346 21.733 1.00 1.00 ATOM 1052 CB PRO 34 -5.783 36.679 20.710 1.00 1.00 ATOM 1053 CD PRO 34 -7.621 38.170 20.858 1.00 1.00 ATOM 1054 CG PRO 34 -7.194 36.871 20.199 1.00 1.00 ATOM 1055 N PHE 35 -4.073 37.800 23.961 1.00 0.99 ATOM 1056 CA PHE 35 -2.813 38.254 24.517 1.00 0.99 ATOM 1057 C PHE 35 -1.937 37.133 24.787 1.00 0.99 ATOM 1058 O PHE 35 -1.903 36.634 25.909 1.00 0.99 ATOM 1059 CB PHE 35 -3.074 39.084 25.785 1.00 0.99 ATOM 1060 CD1 PHE 35 -5.177 40.440 25.612 1.00 0.99 ATOM 1061 CD2 PHE 35 -3.094 41.540 25.276 1.00 0.99 ATOM 1062 CE1 PHE 35 -5.841 41.633 25.398 1.00 0.99 ATOM 1063 CE2 PHE 35 -3.755 42.734 25.060 1.00 0.99 ATOM 1064 CG PHE 35 -3.795 40.379 25.552 1.00 0.99 ATOM 1065 CZ PHE 35 -5.131 42.780 25.122 1.00 0.99 ATOM 1067 N TRP 36 -1.240 36.777 23.710 1.00 0.95 ATOM 1068 CA TRP 36 -0.035 35.900 23.713 1.00 0.95 ATOM 1069 C TRP 36 1.286 36.531 23.227 1.00 0.95 ATOM 1070 O TRP 36 1.320 37.719 22.909 1.00 0.95 ATOM 1071 CB TRP 36 -0.332 34.629 22.876 1.00 0.95 ATOM 1072 CD1 TRP 36 -1.234 32.726 24.335 1.00 0.95 ATOM 1073 CD2 TRP 36 -2.806 33.818 23.170 1.00 0.95 ATOM 1074 CE2 TRP 36 -3.428 32.804 23.924 1.00 0.95 ATOM 1075 CE3 TRP 36 -3.594 34.637 22.357 1.00 0.95 ATOM 1077 NE1 TRP 36 -2.446 32.149 24.629 1.00 0.95 ATOM 1078 CG TRP 36 -1.402 33.749 23.447 1.00 0.95 ATOM 1079 CH2 TRP 36 -5.556 33.402 23.088 1.00 0.95 ATOM 1080 CZ2 TRP 36 -4.804 32.585 23.891 1.00 0.95 ATOM 1081 CZ3 TRP 36 -4.959 34.419 22.324 1.00 0.95 ATOM 1083 N ILE 37 2.407 35.846 23.126 1.00 0.94 ATOM 1084 CA ILE 37 3.831 36.351 23.049 1.00 0.94 ATOM 1085 C ILE 37 4.143 36.978 24.356 1.00 0.94 ATOM 1086 O ILE 37 5.238 36.797 24.880 1.00 0.94 ATOM 1087 CB ILE 37 3.982 37.351 21.911 1.00 0.94 ATOM 1088 CD1 ILE 37 4.482 35.508 20.221 1.00 0.94 ATOM 1089 CG1 ILE 37 3.630 36.710 20.567 1.00 0.94 ATOM 1090 CG2 ILE 37 5.427 37.822 21.857 1.00 0.94 ATOM 1092 N SER 38 3.215 37.762 25.004 1.00 0.96 ATOM 1093 CA SER 38 3.520 38.920 25.764 1.00 0.96 ATOM 1094 C SER 38 3.220 38.855 27.167 1.00 0.96 ATOM 1095 O SER 38 3.978 39.373 27.983 1.00 0.96 ATOM 1096 CB SER 38 2.813 40.160 25.114 1.00 0.96 ATOM 1098 OG SER 38 3.241 40.394 23.784 1.00 0.96 ATOM 1100 N SER 39 2.131 38.222 27.450 1.00 0.96 ATOM 1101 CA SER 39 1.575 38.071 28.821 1.00 0.96 ATOM 1102 C SER 39 2.516 37.277 29.626 1.00 0.96 ATOM 1103 O SER 39 2.492 37.353 30.853 1.00 0.96 ATOM 1104 CB SER 39 0.201 37.420 28.748 1.00 0.96 ATOM 1106 OG SER 39 0.286 36.086 28.278 1.00 0.96 ATOM 1108 N PHE 40 3.364 36.504 28.806 1.00 0.95 ATOM 1109 CA PHE 40 4.274 35.612 29.340 1.00 0.95 ATOM 1110 C PHE 40 5.713 35.952 29.298 1.00 0.95 ATOM 1111 O PHE 40 6.541 35.200 29.809 1.00 0.95 ATOM 1112 CB PHE 40 4.075 34.192 28.679 1.00 0.95 ATOM 1113 CD1 PHE 40 4.172 32.573 30.594 1.00 0.95 ATOM 1114 CD2 PHE 40 5.849 32.433 28.911 1.00 0.95 ATOM 1115 CE1 PHE 40 4.757 31.516 31.266 1.00 0.95 ATOM 1116 CE2 PHE 40 6.436 31.377 29.582 1.00 0.95 ATOM 1117 CG PHE 40 4.712 33.044 29.409 1.00 0.95 ATOM 1118 CZ PHE 40 5.889 30.918 30.759 1.00 0.95 ATOM 1120 N ILE 41 6.027 37.148 28.666 1.00 0.97 ATOM 1121 CA ILE 41 7.508 37.509 28.587 1.00 0.97 ATOM 1122 C ILE 41 7.961 38.613 29.537 1.00 0.97 ATOM 1123 O ILE 41 7.136 39.209 30.228 1.00 0.97 ATOM 1124 CB ILE 41 7.866 37.909 27.132 1.00 0.97 ATOM 1125 CD1 ILE 41 7.394 40.412 27.251 1.00 0.97 ATOM 1126 CG1 ILE 41 6.983 39.074 26.677 1.00 0.97 ATOM 1127 CG2 ILE 41 7.666 36.749 26.169 1.00 0.97 ATOM 1129 N GLY 42 9.207 38.921 29.608 1.00 1.00 ATOM 1130 CA GLY 42 9.632 39.849 30.715 1.00 1.00 ATOM 1131 C GLY 42 9.033 41.223 30.847 1.00 1.00 ATOM 1132 O GLY 42 8.454 41.547 31.880 1.00 1.00 ATOM 1134 N ARG 43 9.128 42.038 29.871 1.00 1.00 ATOM 1135 CA ARG 43 8.603 43.456 30.034 1.00 1.00 ATOM 1136 C ARG 43 8.121 43.985 28.661 1.00 1.00 ATOM 1137 O ARG 43 8.516 43.455 27.624 1.00 1.00 ATOM 1138 CB ARG 43 9.688 44.345 30.600 1.00 1.00 ATOM 1139 CD ARG 43 11.033 45.054 32.597 1.00 1.00 ATOM 1141 NE ARG 43 11.348 44.804 34.000 1.00 1.00 ATOM 1142 CG ARG 43 10.039 44.044 32.048 1.00 1.00 ATOM 1143 NH1 ARG 43 12.697 46.656 34.203 1.00 1.00 ATOM 1144 NH2 ARG 43 12.368 45.274 36.007 1.00 1.00 ATOM 1149 CZ ARG 43 12.137 45.579 34.738 1.00 1.00 ATOM 1151 N SER 44 7.233 45.085 28.759 1.00 1.02 ATOM 1152 CA SER 44 7.009 46.009 27.576 1.00 1.02 ATOM 1153 C SER 44 5.778 45.604 26.902 1.00 1.02 ATOM 1154 O SER 44 5.609 44.430 26.581 1.00 1.02 ATOM 1155 CB SER 44 8.221 45.947 26.661 1.00 1.02 ATOM 1157 OG SER 44 9.377 46.487 27.275 1.00 1.02 ATOM 1159 N LYS 45 4.951 46.644 26.708 1.00 1.01 ATOM 1160 CA LYS 45 3.569 46.337 26.362 1.00 1.01 ATOM 1161 C LYS 45 3.416 46.646 24.841 1.00 1.01 ATOM 1162 O LYS 45 2.558 46.068 24.179 1.00 1.01 ATOM 1163 CB LYS 45 2.596 47.163 27.160 1.00 1.01 ATOM 1164 CD LYS 45 2.260 45.473 28.985 1.00 1.01 ATOM 1165 CE LYS 45 2.206 45.248 30.487 1.00 1.01 ATOM 1166 CG LYS 45 2.675 46.898 28.654 1.00 1.01 ATOM 1167 NZ LYS 45 1.864 43.839 30.824 1.00 1.01 TER END