####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS358_4-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS358_4-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 6 - 23 4.85 20.20 LONGEST_CONTINUOUS_SEGMENT: 18 13 - 30 4.92 18.37 LONGEST_CONTINUOUS_SEGMENT: 18 17 - 34 4.67 15.65 LONGEST_CONTINUOUS_SEGMENT: 18 18 - 35 4.55 15.06 LONGEST_CONTINUOUS_SEGMENT: 18 28 - 45 4.98 25.43 LCS_AVERAGE: 39.31 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 20 - 32 1.96 14.46 LCS_AVERAGE: 19.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.73 14.51 LCS_AVERAGE: 12.76 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 5 5 8 3 3 5 5 5 5 5 6 6 6 6 7 7 8 8 8 9 9 9 9 LCS_GDT V 3 V 3 5 5 8 3 4 5 5 5 5 5 6 6 6 6 6 6 8 8 8 9 9 9 9 LCS_GDT Q 4 Q 4 5 5 8 3 4 5 5 5 5 5 6 6 6 6 7 7 8 8 8 9 10 18 18 LCS_GDT G 5 G 5 5 5 17 3 4 5 5 5 5 5 6 6 6 6 13 14 16 18 18 20 21 21 23 LCS_GDT P 6 P 6 5 5 18 0 4 5 5 6 6 6 9 12 13 14 15 17 18 19 20 22 22 23 25 LCS_GDT W 7 W 7 3 4 18 0 3 3 5 6 6 9 11 12 13 14 15 17 18 19 22 22 24 26 28 LCS_GDT V 8 V 8 3 4 18 3 3 4 5 6 6 7 9 12 13 14 15 17 18 19 22 22 24 26 28 LCS_GDT G 9 G 9 3 4 18 3 3 4 5 6 12 13 15 15 16 16 17 17 19 19 22 24 26 27 28 LCS_GDT S 10 S 10 3 4 18 3 3 3 5 9 13 14 15 16 17 17 18 20 20 21 22 24 26 27 28 LCS_GDT S 11 S 11 3 4 18 3 3 3 4 5 10 12 14 14 17 18 19 20 20 21 22 24 26 27 28 LCS_GDT Y 12 Y 12 3 7 18 3 3 3 6 7 8 9 11 13 16 18 19 20 20 21 23 24 24 27 28 LCS_GDT V 13 V 13 5 7 18 4 5 5 6 7 8 10 11 12 15 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 14 A 14 5 8 18 4 5 5 6 7 8 9 11 12 14 16 19 20 21 21 23 24 24 25 27 LCS_GDT E 15 E 15 5 8 18 4 5 6 7 7 8 9 11 12 13 16 19 20 21 21 23 24 24 25 25 LCS_GDT T 16 T 16 5 8 18 4 5 6 7 7 8 10 11 12 13 15 19 20 21 21 22 24 24 26 28 LCS_GDT G 17 G 17 5 8 18 3 5 6 7 7 8 10 11 12 13 16 19 20 21 21 23 24 26 27 28 LCS_GDT Q 18 Q 18 4 8 18 3 4 6 7 7 8 10 12 13 16 18 19 20 21 21 23 24 26 27 28 LCS_GDT N 19 N 19 4 11 18 3 4 5 7 8 11 13 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT W 20 W 20 10 13 18 6 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 21 A 21 10 13 18 8 9 10 11 11 13 14 15 16 17 17 19 20 21 21 23 24 26 27 28 LCS_GDT S 22 S 22 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT L 23 L 23 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 24 A 24 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT A 25 A 25 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT N 26 N 26 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT E 27 E 27 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 20 21 23 24 26 27 28 LCS_GDT L 28 L 28 10 13 18 8 9 10 11 11 13 14 15 16 17 18 19 20 20 21 23 24 26 27 28 LCS_GDT R 29 R 29 10 13 18 3 4 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 24 26 28 LCS_GDT V 30 V 30 5 13 18 3 4 7 10 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT T 31 T 31 5 13 18 3 4 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT E 32 E 32 5 13 18 3 4 5 8 10 11 14 15 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT R 33 R 33 4 8 18 3 3 5 6 7 9 13 14 16 17 18 19 20 21 21 23 24 26 27 28 LCS_GDT P 34 P 34 4 9 18 1 3 7 7 9 9 10 10 13 14 16 19 20 21 21 23 24 26 27 28 LCS_GDT F 35 F 35 4 9 18 3 3 7 7 9 9 10 10 13 14 15 17 20 21 21 23 24 26 27 28 LCS_GDT W 36 W 36 5 9 18 3 4 6 7 9 9 10 10 13 14 15 15 16 18 20 22 24 26 27 28 LCS_GDT I 37 I 37 5 9 18 3 4 7 7 9 9 10 10 12 12 15 15 17 18 20 22 24 26 27 28 LCS_GDT S 38 S 38 5 9 18 3 4 7 7 9 9 10 10 12 14 15 15 17 18 20 21 24 26 27 28 LCS_GDT S 39 S 39 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 23 26 27 27 LCS_GDT F 40 F 40 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 22 24 25 26 LCS_GDT I 41 I 41 5 9 18 3 4 7 7 9 9 10 10 13 14 15 15 17 18 20 21 22 24 25 26 LCS_GDT G 42 G 42 5 9 18 3 4 5 7 9 9 10 10 13 14 15 15 16 18 19 21 22 23 25 26 LCS_GDT R 43 R 43 3 6 18 3 3 4 6 7 8 9 10 13 14 15 15 16 16 17 18 21 22 23 26 LCS_GDT S 44 S 44 3 6 18 3 3 4 5 7 8 9 10 13 14 15 15 16 16 17 17 18 18 20 20 LCS_GDT K 45 K 45 3 6 18 3 3 4 5 6 6 6 10 13 14 15 15 16 16 17 17 18 18 20 20 LCS_AVERAGE LCS_A: 24.00 ( 12.76 19.94 39.31 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 9 10 11 11 13 14 15 16 17 18 19 20 21 21 23 24 26 27 28 GDT PERCENT_AT 18.18 20.45 22.73 25.00 25.00 29.55 31.82 34.09 36.36 38.64 40.91 43.18 45.45 47.73 47.73 52.27 54.55 59.09 61.36 63.64 GDT RMS_LOCAL 0.30 0.37 0.64 0.90 0.90 1.93 2.23 2.36 2.78 3.08 3.67 3.82 4.53 4.69 4.29 5.30 5.47 6.69 6.89 7.20 GDT RMS_ALL_AT 14.51 14.47 14.39 14.43 14.43 14.17 14.17 13.86 14.06 14.22 15.13 15.05 19.07 19.00 14.91 17.57 17.94 12.97 12.81 12.71 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 29.040 0 0.584 0.582 30.622 0.000 0.000 - LGA V 3 V 3 27.101 0 0.067 0.093 30.249 0.000 0.000 27.873 LGA Q 4 Q 4 22.759 0 0.132 0.381 24.303 0.000 0.000 20.965 LGA G 5 G 5 19.445 0 0.064 0.064 20.734 0.000 0.000 - LGA P 6 P 6 16.263 0 0.660 0.543 17.834 0.000 0.000 17.790 LGA W 7 W 7 9.865 0 0.464 1.299 12.223 0.000 0.130 6.860 LGA V 8 V 8 8.947 0 0.577 0.572 13.262 0.000 0.000 10.289 LGA G 9 G 9 3.277 0 0.545 0.545 4.873 15.909 15.909 - LGA S 10 S 10 3.498 0 0.606 0.874 6.963 17.273 11.818 6.925 LGA S 11 S 11 9.206 0 0.577 0.499 11.639 0.000 0.000 11.639 LGA Y 12 Y 12 10.478 0 0.598 1.136 13.606 0.000 0.000 10.428 LGA V 13 V 13 11.940 0 0.649 0.937 15.869 0.000 0.000 12.454 LGA A 14 A 14 18.201 0 0.124 0.128 20.706 0.000 0.000 - LGA E 15 E 15 21.479 0 0.076 1.455 25.998 0.000 0.000 25.998 LGA T 16 T 16 18.335 0 0.647 0.578 18.998 0.000 0.000 14.506 LGA G 17 G 17 15.715 0 0.717 0.717 16.804 0.000 0.000 - LGA Q 18 Q 18 8.626 0 0.171 1.057 13.983 0.000 0.000 10.438 LGA N 19 N 19 4.332 0 0.174 1.322 5.203 9.545 10.455 2.823 LGA W 20 W 20 2.497 0 0.634 1.020 8.520 41.364 11.948 8.466 LGA A 21 A 21 2.193 0 0.056 0.055 2.584 44.545 41.091 - LGA S 22 S 22 1.839 0 0.037 0.058 2.297 51.364 46.970 2.297 LGA L 23 L 23 1.624 0 0.014 0.997 5.316 62.273 39.545 5.316 LGA A 24 A 24 1.406 0 0.035 0.034 1.773 61.818 59.636 - LGA A 25 A 25 0.819 0 0.021 0.020 1.082 86.818 85.818 - LGA N 26 N 26 0.478 0 0.017 0.968 4.386 90.909 60.455 4.386 LGA E 27 E 27 0.692 0 0.066 1.018 3.968 82.273 55.960 3.968 LGA L 28 L 28 0.858 0 0.147 1.008 5.209 81.818 58.636 5.209 LGA R 29 R 29 2.171 0 0.605 1.545 12.437 62.727 22.975 11.693 LGA V 30 V 30 3.783 0 0.496 0.555 7.147 28.636 16.364 7.147 LGA T 31 T 31 1.348 0 0.255 1.101 5.568 46.818 31.429 4.362 LGA E 32 E 32 5.930 0 0.611 1.350 10.561 2.727 1.212 10.561 LGA R 33 R 33 8.597 0 0.139 1.415 10.366 0.000 0.000 5.575 LGA P 34 P 34 13.603 0 0.340 0.535 14.186 0.000 0.000 13.365 LGA F 35 F 35 15.413 0 0.297 1.161 19.133 0.000 0.000 15.171 LGA W 36 W 36 18.354 0 0.186 1.118 28.735 0.000 0.000 28.735 LGA I 37 I 37 17.134 0 0.098 0.805 18.088 0.000 0.000 17.417 LGA S 38 S 38 19.705 0 0.097 0.120 20.170 0.000 0.000 19.720 LGA S 39 S 39 19.472 0 0.082 0.105 19.558 0.000 0.000 18.509 LGA F 40 F 40 18.965 0 0.149 1.078 19.104 0.000 0.000 14.907 LGA I 41 I 41 19.384 0 0.177 1.383 21.569 0.000 0.000 21.569 LGA G 42 G 42 18.544 0 0.268 0.268 18.582 0.000 0.000 - LGA R 43 R 43 15.583 0 0.041 0.799 17.734 0.000 0.000 16.255 LGA S 44 S 44 14.252 0 0.072 0.076 14.322 0.000 0.000 14.322 LGA K 45 K 45 14.476 0 0.649 1.041 19.172 0.000 0.000 19.172 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 12.364 12.191 12.991 17.882 12.963 2.494 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 15 2.36 32.955 29.815 0.609 LGA_LOCAL RMSD: 2.363 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.859 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 12.364 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.647383 * X + 0.074569 * Y + 0.758508 * Z + -66.987869 Y_new = 0.505638 * X + 0.702634 * Y + -0.500636 * Z + -37.016792 Z_new = -0.570285 * X + 0.707633 * Y + 0.417169 * Z + 9.088836 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.663078 0.606853 1.038113 [DEG: 37.9916 34.7701 59.4795 ] ZXZ: 0.987405 1.140468 -0.678331 [DEG: 56.5741 65.3440 -38.8655 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS358_4-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS358_4-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 15 2.36 29.815 12.36 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS358_4-D1 PFRMAT TS TARGET T0953s2 MODEL 4 PARENT N/A ATOM 748 N ALA 2 19.234 16.503 -3.795 1.00 1.16 ATOM 749 CA ALA 2 19.324 15.522 -4.925 1.00 1.16 ATOM 750 C ALA 2 18.228 15.860 -5.932 1.00 1.16 ATOM 751 O ALA 2 18.493 15.929 -7.131 1.00 1.16 ATOM 752 CB ALA 2 19.172 14.104 -4.407 1.00 1.16 ATOM 754 N VAL 3 16.968 16.079 -5.398 1.00 1.07 ATOM 755 CA VAL 3 15.737 16.331 -6.124 1.00 1.07 ATOM 756 C VAL 3 14.793 17.427 -5.642 1.00 1.07 ATOM 757 O VAL 3 14.537 17.536 -4.445 1.00 1.07 ATOM 758 CB VAL 3 14.899 14.998 -6.244 1.00 1.07 ATOM 759 CG1 VAL 3 13.626 15.216 -7.048 1.00 1.07 ATOM 760 CG2 VAL 3 15.705 13.894 -6.910 1.00 1.07 ATOM 762 N GLN 4 14.257 18.236 -6.499 1.00 1.01 ATOM 763 CA GLN 4 14.043 19.587 -5.983 1.00 1.01 ATOM 764 C GLN 4 12.553 19.741 -5.787 1.00 1.01 ATOM 765 O GLN 4 11.798 18.814 -6.069 1.00 1.01 ATOM 766 CB GLN 4 14.574 20.626 -6.945 1.00 1.01 ATOM 767 CD GLN 4 16.584 21.586 -8.135 1.00 1.01 ATOM 768 NE2 GLN 4 17.883 21.549 -8.409 1.00 1.01 ATOM 769 OE1 GLN 4 15.809 22.369 -8.685 1.00 1.01 ATOM 770 CG GLN 4 16.088 20.604 -7.092 1.00 1.01 ATOM 774 N GLY 5 12.102 20.953 -5.295 1.00 0.95 ATOM 775 CA GLY 5 11.237 21.017 -4.120 1.00 0.95 ATOM 776 C GLY 5 9.914 21.699 -4.334 1.00 0.95 ATOM 777 O GLY 5 9.638 22.178 -5.433 1.00 0.95 ATOM 779 N PRO 6 9.132 21.694 -3.164 1.00 0.94 ATOM 780 CA PRO 6 7.939 22.479 -3.131 1.00 0.94 ATOM 781 C PRO 6 7.449 23.058 -1.757 1.00 0.94 ATOM 782 O PRO 6 7.787 22.520 -0.706 1.00 0.94 ATOM 783 CB PRO 6 6.869 21.513 -3.719 1.00 0.94 ATOM 784 CD PRO 6 8.903 20.342 -3.382 1.00 0.94 ATOM 785 CG PRO 6 7.397 20.159 -3.304 1.00 0.94 ATOM 786 N TRP 7 6.630 24.180 -1.830 1.00 0.94 ATOM 787 CA TRP 7 6.538 25.058 -0.578 1.00 0.94 ATOM 788 C TRP 7 5.366 26.003 -0.593 1.00 0.94 ATOM 789 O TRP 7 4.678 26.117 -1.605 1.00 0.94 ATOM 790 CB TRP 7 7.859 25.825 -0.424 1.00 0.94 ATOM 791 CD1 TRP 7 7.711 28.118 -1.554 1.00 0.94 ATOM 792 CD2 TRP 7 8.803 26.570 -2.751 1.00 0.94 ATOM 793 CE2 TRP 7 8.792 27.777 -3.479 1.00 0.94 ATOM 794 CE3 TRP 7 9.435 25.453 -3.303 1.00 0.94 ATOM 796 NE1 TRP 7 8.118 28.709 -2.726 1.00 0.94 ATOM 797 CG TRP 7 8.105 26.812 -1.523 1.00 0.94 ATOM 798 CH2 TRP 7 10.002 26.790 -5.252 1.00 0.94 ATOM 799 CZ2 TRP 7 9.389 27.900 -4.732 1.00 0.94 ATOM 800 CZ3 TRP 7 10.026 25.574 -4.547 1.00 0.94 ATOM 802 N VAL 8 5.223 26.651 0.596 1.00 0.95 ATOM 803 CA VAL 8 4.180 27.660 1.070 1.00 0.95 ATOM 804 C VAL 8 4.618 28.658 2.088 1.00 0.95 ATOM 805 O VAL 8 4.664 28.345 3.277 1.00 0.95 ATOM 806 CB VAL 8 2.934 26.882 1.601 1.00 0.95 ATOM 807 CG1 VAL 8 1.852 27.866 2.023 1.00 0.95 ATOM 808 CG2 VAL 8 2.351 25.948 0.553 1.00 0.95 ATOM 810 N GLY 9 4.918 29.814 1.647 1.00 0.99 ATOM 811 CA GLY 9 4.605 31.055 2.256 1.00 0.99 ATOM 812 C GLY 9 3.240 31.091 2.760 1.00 0.99 ATOM 813 O GLY 9 2.308 30.738 2.040 1.00 0.99 ATOM 815 N SER 10 3.174 31.533 4.009 1.00 1.01 ATOM 816 CA SER 10 2.046 31.204 4.974 1.00 1.01 ATOM 817 C SER 10 0.929 32.246 4.488 1.00 1.01 ATOM 818 O SER 10 1.004 33.427 4.819 1.00 1.01 ATOM 819 CB SER 10 2.426 31.459 6.369 1.00 1.01 ATOM 821 OG SER 10 1.298 31.307 7.213 1.00 1.01 ATOM 823 N SER 11 -0.073 31.848 3.742 1.00 1.00 ATOM 824 CA SER 11 -1.280 32.629 3.946 1.00 1.00 ATOM 825 C SER 11 -1.285 34.071 3.289 1.00 1.00 ATOM 826 O SER 11 -0.723 35.007 3.854 1.00 1.00 ATOM 827 CB SER 11 -1.579 32.783 5.453 1.00 1.00 ATOM 829 OG SER 11 -2.756 33.534 5.690 1.00 1.00 ATOM 831 N TYR 12 -1.873 34.297 2.164 1.00 0.98 ATOM 832 CA TYR 12 -1.919 35.768 1.760 1.00 0.98 ATOM 833 C TYR 12 -3.346 36.337 2.209 1.00 0.98 ATOM 834 O TYR 12 -4.343 36.109 1.528 1.00 0.98 ATOM 835 CB TYR 12 -1.746 35.918 0.281 1.00 0.98 ATOM 836 CD1 TYR 12 -0.123 34.250 -0.691 1.00 0.98 ATOM 837 CD2 TYR 12 0.690 36.423 -0.136 1.00 0.98 ATOM 838 CE1 TYR 12 1.135 33.880 -1.124 1.00 0.98 ATOM 839 CE2 TYR 12 1.956 36.070 -0.565 1.00 0.98 ATOM 840 CG TYR 12 -0.366 35.523 -0.191 1.00 0.98 ATOM 841 OH TYR 12 3.431 34.438 -1.489 1.00 0.98 ATOM 842 CZ TYR 12 2.176 34.799 -1.060 1.00 0.98 ATOM 845 N VAL 13 -3.326 37.063 3.358 1.00 0.98 ATOM 846 CA VAL 13 -4.261 36.689 4.467 1.00 0.98 ATOM 847 C VAL 13 -5.045 37.896 4.594 1.00 0.98 ATOM 848 O VAL 13 -4.532 38.990 4.363 1.00 0.98 ATOM 849 CB VAL 13 -3.509 36.352 5.724 1.00 0.98 ATOM 850 CG1 VAL 13 -2.670 37.519 6.224 1.00 0.98 ATOM 851 CG2 VAL 13 -4.522 35.993 6.801 1.00 0.98 ATOM 853 N ALA 14 -6.305 37.697 4.973 1.00 1.03 ATOM 854 CA ALA 14 -7.215 38.584 5.638 1.00 1.03 ATOM 855 C ALA 14 -8.689 38.498 5.280 1.00 1.03 ATOM 856 O ALA 14 -9.501 38.092 6.108 1.00 1.03 ATOM 857 CB ALA 14 -6.737 40.069 5.446 1.00 1.03 ATOM 859 N GLU 15 -8.987 38.901 3.987 1.00 1.05 ATOM 860 CA GLU 15 -10.252 38.815 3.278 1.00 1.05 ATOM 861 C GLU 15 -10.493 37.272 2.906 1.00 1.05 ATOM 862 O GLU 15 -11.635 36.855 2.722 1.00 1.05 ATOM 863 CB GLU 15 -10.256 39.634 2.015 1.00 1.05 ATOM 864 CD GLU 15 -10.254 41.957 1.025 1.00 1.05 ATOM 865 OE1 GLU 15 -10.117 41.367 -0.067 1.00 1.05 ATOM 866 OE2 GLU 15 -10.341 43.199 1.123 1.00 1.05 ATOM 867 CG GLU 15 -10.321 41.128 2.292 1.00 1.05 ATOM 869 N THR 16 -9.422 36.584 2.842 1.00 1.04 ATOM 870 CA THR 16 -9.244 35.125 2.670 1.00 1.04 ATOM 871 C THR 16 -9.120 34.286 3.839 1.00 1.04 ATOM 872 O THR 16 -9.242 34.769 4.962 1.00 1.04 ATOM 873 CB THR 16 -8.001 34.882 1.718 1.00 1.04 ATOM 874 CG2 THR 16 -8.081 35.694 0.435 1.00 1.04 ATOM 876 OG1 THR 16 -6.823 35.265 2.438 1.00 1.04 ATOM 878 N GLY 17 -8.854 32.981 3.517 1.00 1.05 ATOM 879 CA GLY 17 -8.751 32.007 4.589 1.00 1.05 ATOM 880 C GLY 17 -7.558 32.293 5.406 1.00 1.05 ATOM 881 O GLY 17 -6.978 33.370 5.295 1.00 1.05 ATOM 883 N GLN 18 -7.244 31.237 6.223 1.00 1.04 ATOM 884 CA GLN 18 -6.709 31.477 7.581 1.00 1.04 ATOM 885 C GLN 18 -7.144 30.352 8.516 1.00 1.04 ATOM 886 O GLN 18 -8.278 30.350 8.991 1.00 1.04 ATOM 887 CB GLN 18 -7.181 32.823 8.109 1.00 1.04 ATOM 888 CD GLN 18 -9.113 34.309 8.770 1.00 1.04 ATOM 889 NE2 GLN 18 -9.603 35.129 7.847 1.00 1.04 ATOM 890 OE1 GLN 18 -9.001 34.628 9.953 1.00 1.04 ATOM 891 CG GLN 18 -8.686 32.935 8.293 1.00 1.04 ATOM 895 N ASN 19 -6.272 29.383 8.809 1.00 1.01 ATOM 896 CA ASN 19 -6.129 28.750 10.182 1.00 1.01 ATOM 897 C ASN 19 -4.753 29.109 10.820 1.00 1.01 ATOM 898 O ASN 19 -4.460 28.681 11.934 1.00 1.01 ATOM 899 CB ASN 19 -6.282 27.243 10.074 1.00 1.01 ATOM 900 ND2 ASN 19 -5.178 26.657 8.004 1.00 1.01 ATOM 901 OD1 ASN 19 -4.239 26.005 9.937 1.00 1.01 ATOM 902 CG ASN 19 -5.141 26.581 9.328 1.00 1.01 ATOM 906 N TRP 20 -3.934 29.938 10.032 1.00 0.98 ATOM 907 CA TRP 20 -2.500 29.659 10.022 1.00 0.98 ATOM 908 C TRP 20 -1.724 30.939 9.742 1.00 0.98 ATOM 909 O TRP 20 -0.586 31.078 10.185 1.00 0.98 ATOM 910 CB TRP 20 -2.167 28.598 8.979 1.00 0.98 ATOM 911 CD1 TRP 20 -3.008 30.200 7.165 1.00 0.98 ATOM 912 CD2 TRP 20 -2.122 28.298 6.377 1.00 0.98 ATOM 913 CE2 TRP 20 -2.543 29.084 5.286 1.00 0.98 ATOM 914 CE3 TRP 20 -1.534 27.055 6.127 1.00 0.98 ATOM 916 NE1 TRP 20 -3.082 30.242 5.794 1.00 0.98 ATOM 917 CG TRP 20 -2.430 29.031 7.569 1.00 0.98 ATOM 918 CH2 TRP 20 -1.814 27.447 3.745 1.00 0.98 ATOM 919 CZ2 TRP 20 -2.396 28.669 3.964 1.00 0.98 ATOM 920 CZ3 TRP 20 -1.387 26.643 4.816 1.00 0.98 ATOM 922 N ALA 21 -2.174 31.996 9.030 1.00 0.96 ATOM 923 CA ALA 21 -1.674 33.401 9.463 1.00 0.96 ATOM 924 C ALA 21 -2.570 34.068 10.505 1.00 0.96 ATOM 925 O ALA 21 -2.084 34.839 11.329 1.00 0.96 ATOM 926 CB ALA 21 -1.544 34.278 8.210 1.00 0.96 ATOM 928 N SER 22 -3.836 33.747 10.442 1.00 0.99 ATOM 929 CA SER 22 -4.769 34.258 11.452 1.00 0.99 ATOM 930 C SER 22 -4.258 33.760 12.792 1.00 0.99 ATOM 931 O SER 22 -4.241 34.513 13.763 1.00 0.99 ATOM 932 CB SER 22 -6.171 33.767 11.191 1.00 0.99 ATOM 934 OG SER 22 -6.269 32.356 11.273 1.00 0.99 ATOM 936 N LEU 23 -3.840 32.514 12.842 1.00 0.98 ATOM 937 CA LEU 23 -3.335 31.934 14.082 1.00 0.98 ATOM 938 C LEU 23 -1.989 32.518 14.520 1.00 0.98 ATOM 939 O LEU 23 -1.756 32.700 15.713 1.00 0.98 ATOM 940 CB LEU 23 -3.215 30.405 13.942 1.00 0.98 ATOM 941 CD1 LEU 23 -1.600 29.733 15.741 1.00 0.98 ATOM 942 CD2 LEU 23 -3.962 30.129 16.321 1.00 0.98 ATOM 943 CG LEU 23 -3.031 29.612 15.236 1.00 0.98 ATOM 945 N ALA 24 -1.090 32.826 13.580 1.00 0.96 ATOM 946 CA ALA 24 0.176 33.327 13.883 1.00 0.96 ATOM 947 C ALA 24 0.015 34.667 14.595 1.00 0.96 ATOM 948 O ALA 24 0.750 34.957 15.537 1.00 0.96 ATOM 949 CB ALA 24 1.041 33.510 12.631 1.00 0.96 ATOM 951 N ALA 25 -0.956 35.478 14.149 1.00 0.99 ATOM 952 CA ALA 25 -1.225 36.772 14.772 1.00 0.99 ATOM 953 C ALA 25 -1.726 36.611 16.221 1.00 0.99 ATOM 954 O ALA 25 -1.294 37.345 17.107 1.00 0.99 ATOM 955 CB ALA 25 -2.254 37.564 13.952 1.00 0.99 ATOM 957 N ASN 26 -2.619 35.655 16.440 1.00 1.02 ATOM 958 CA ASN 26 -3.130 35.395 17.819 1.00 1.02 ATOM 959 C ASN 26 -1.971 34.998 18.728 1.00 1.02 ATOM 960 O ASN 26 -1.909 35.438 19.874 1.00 1.02 ATOM 961 CB ASN 26 -4.187 34.304 17.788 1.00 1.02 ATOM 962 ND2 ASN 26 -2.728 32.392 17.536 1.00 1.02 ATOM 963 OD1 ASN 26 -4.323 32.729 15.991 1.00 1.02 ATOM 964 CG ASN 26 -3.749 33.069 17.026 1.00 1.02 ATOM 968 N GLU 27 -1.025 34.158 18.224 1.00 1.01 ATOM 969 CA GLU 27 0.174 33.704 19.025 1.00 1.01 ATOM 970 C GLU 27 1.092 34.900 19.121 1.00 1.01 ATOM 971 O GLU 27 1.758 35.085 20.138 1.00 1.01 ATOM 972 CB GLU 27 0.842 32.542 18.342 1.00 1.01 ATOM 973 CD GLU 27 2.650 30.783 18.482 1.00 1.01 ATOM 974 OE1 GLU 27 2.114 30.317 17.455 1.00 1.01 ATOM 975 OE2 GLU 27 3.663 30.281 19.014 1.00 1.01 ATOM 976 CG GLU 27 2.044 32.022 19.113 1.00 1.01 ATOM 978 N LEU 28 1.053 35.677 17.985 1.00 0.99 ATOM 979 CA LEU 28 1.919 36.776 18.061 1.00 0.99 ATOM 980 C LEU 28 1.219 38.199 18.161 1.00 0.99 ATOM 981 O LEU 28 1.836 39.158 18.620 1.00 0.99 ATOM 982 CB LEU 28 2.888 36.818 16.851 1.00 0.99 ATOM 983 CD1 LEU 28 4.891 36.040 18.147 1.00 0.99 ATOM 984 CD2 LEU 28 3.551 34.398 16.891 1.00 0.99 ATOM 985 CG LEU 28 4.058 35.832 16.892 1.00 0.99 ATOM 987 N ARG 29 -0.009 38.416 17.780 1.00 1.01 ATOM 988 CA ARG 29 -0.532 39.852 17.797 1.00 1.01 ATOM 989 C ARG 29 -1.190 40.087 19.245 1.00 1.01 ATOM 990 O ARG 29 -0.473 40.288 20.223 1.00 1.01 ATOM 991 CB ARG 29 -1.554 40.060 16.729 1.00 1.01 ATOM 992 CD ARG 29 -3.063 41.666 15.527 1.00 1.01 ATOM 994 NE ARG 29 -2.447 41.466 14.220 1.00 1.01 ATOM 995 CG ARG 29 -2.066 41.489 16.660 1.00 1.01 ATOM 996 NH1 ARG 29 -4.454 41.269 13.114 1.00 1.01 ATOM 997 NH2 ARG 29 -2.482 41.106 11.949 1.00 1.01 ATOM 1002 CZ ARG 29 -3.128 41.281 13.093 1.00 1.01 ATOM 1004 N VAL 30 -2.450 40.045 19.311 1.00 0.98 ATOM 1005 CA VAL 30 -3.405 40.887 20.042 1.00 0.98 ATOM 1006 C VAL 30 -4.506 41.389 18.905 1.00 0.98 ATOM 1007 O VAL 30 -5.433 40.653 18.575 1.00 0.98 ATOM 1008 CB VAL 30 -2.793 42.114 20.650 1.00 0.98 ATOM 1009 CG1 VAL 30 -3.859 43.037 21.219 1.00 0.98 ATOM 1010 CG2 VAL 30 -1.888 41.667 21.788 1.00 0.98 ATOM 1012 N THR 31 -4.339 42.595 18.374 1.00 1.00 ATOM 1013 CA THR 31 -5.256 43.609 18.145 1.00 1.00 ATOM 1014 C THR 31 -5.902 44.259 19.256 1.00 1.00 ATOM 1015 O THR 31 -5.696 45.450 19.478 1.00 1.00 ATOM 1016 CB THR 31 -6.392 43.095 17.146 1.00 1.00 ATOM 1017 CG2 THR 31 -7.333 44.218 16.743 1.00 1.00 ATOM 1019 OG1 THR 31 -5.816 42.526 15.963 1.00 1.00 ATOM 1021 N GLU 32 -6.679 43.458 19.954 1.00 1.00 ATOM 1022 CA GLU 32 -7.417 43.787 21.091 1.00 1.00 ATOM 1023 C GLU 32 -7.814 42.449 21.772 1.00 1.00 ATOM 1024 O GLU 32 -7.761 42.340 22.997 1.00 1.00 ATOM 1025 CB GLU 32 -8.668 44.581 20.772 1.00 1.00 ATOM 1026 CD GLU 32 -10.714 45.801 21.614 1.00 1.00 ATOM 1027 OE1 GLU 32 -10.910 46.067 20.410 1.00 1.00 ATOM 1028 OE2 GLU 32 -11.445 46.221 22.536 1.00 1.00 ATOM 1029 CG GLU 32 -9.531 44.924 21.977 1.00 1.00 ATOM 1031 N ARG 33 -8.197 41.452 20.955 1.00 1.01 ATOM 1032 CA ARG 33 -8.353 40.123 21.425 1.00 1.01 ATOM 1033 C ARG 33 -7.124 39.321 21.351 1.00 1.01 ATOM 1034 O ARG 33 -6.191 39.688 20.641 1.00 1.01 ATOM 1035 CB ARG 33 -9.500 39.417 20.654 1.00 1.01 ATOM 1036 CD ARG 33 -11.918 39.347 19.985 1.00 1.01 ATOM 1038 NE ARG 33 -11.685 39.611 18.569 1.00 1.01 ATOM 1039 CG ARG 33 -10.880 40.018 20.869 1.00 1.01 ATOM 1040 NH1 ARG 33 -13.435 38.300 17.860 1.00 1.01 ATOM 1041 NH2 ARG 33 -12.131 39.401 16.323 1.00 1.01 ATOM 1046 CZ ARG 33 -12.418 39.104 17.583 1.00 1.01 ATOM 1048 N PRO 34 -7.058 38.139 22.099 1.00 1.00 ATOM 1049 CA PRO 34 -5.836 37.221 22.156 1.00 1.00 ATOM 1050 C PRO 34 -4.428 37.849 22.583 1.00 1.00 ATOM 1051 O PRO 34 -3.691 38.346 21.733 1.00 1.00 ATOM 1052 CB PRO 34 -5.785 36.677 20.711 1.00 1.00 ATOM 1053 CD PRO 34 -7.425 38.386 20.814 1.00 1.00 ATOM 1054 CG PRO 34 -6.368 37.807 19.892 1.00 1.00 ATOM 1055 N PHE 35 -4.073 37.800 23.960 1.00 0.99 ATOM 1056 CA PHE 35 -2.813 38.254 24.517 1.00 0.99 ATOM 1057 C PHE 35 -1.938 37.133 24.787 1.00 0.99 ATOM 1058 O PHE 35 -1.902 36.634 25.910 1.00 0.99 ATOM 1059 CB PHE 35 -3.075 39.083 25.786 1.00 0.99 ATOM 1060 CD1 PHE 35 -5.178 40.439 25.613 1.00 0.99 ATOM 1061 CD2 PHE 35 -3.095 41.539 25.279 1.00 0.99 ATOM 1062 CE1 PHE 35 -5.843 41.632 25.400 1.00 0.99 ATOM 1063 CE2 PHE 35 -3.757 42.733 25.064 1.00 0.99 ATOM 1064 CG PHE 35 -3.797 40.378 25.554 1.00 0.99 ATOM 1065 CZ PHE 35 -5.132 42.779 25.125 1.00 0.99 ATOM 1067 N TRP 36 -1.241 36.777 23.709 1.00 0.95 ATOM 1068 CA TRP 36 -0.035 35.899 23.714 1.00 0.95 ATOM 1069 C TRP 36 1.285 36.531 23.227 1.00 0.95 ATOM 1070 O TRP 36 1.320 37.719 22.909 1.00 0.95 ATOM 1071 CB TRP 36 -0.333 34.628 22.878 1.00 0.95 ATOM 1072 CD1 TRP 36 1.669 33.342 21.929 1.00 0.95 ATOM 1073 CD2 TRP 36 1.066 32.717 23.995 1.00 0.95 ATOM 1074 CE2 TRP 36 2.170 31.938 23.593 1.00 0.95 ATOM 1075 CE3 TRP 36 0.513 32.502 25.260 1.00 0.95 ATOM 1077 NE1 TRP 36 2.519 32.338 22.325 1.00 0.95 ATOM 1078 CG TRP 36 0.763 33.608 22.915 1.00 0.95 ATOM 1079 CH2 TRP 36 2.171 30.769 25.646 1.00 0.95 ATOM 1080 CZ2 TRP 36 2.732 30.959 24.410 1.00 0.95 ATOM 1081 CZ3 TRP 36 1.070 31.531 26.071 1.00 0.95 ATOM 1083 N ILE 37 2.407 35.845 23.126 1.00 0.94 ATOM 1084 CA ILE 37 3.831 36.351 23.049 1.00 0.94 ATOM 1085 C ILE 37 4.142 36.977 24.356 1.00 0.94 ATOM 1086 O ILE 37 5.239 36.796 24.880 1.00 0.94 ATOM 1087 CB ILE 37 3.983 37.348 21.911 1.00 0.94 ATOM 1088 CD1 ILE 37 6.127 38.508 22.656 1.00 0.94 ATOM 1089 CG1 ILE 37 5.473 37.583 21.655 1.00 0.94 ATOM 1090 CG2 ILE 37 3.339 38.682 22.260 1.00 0.94 ATOM 1092 N SER 38 3.215 37.762 25.004 1.00 0.96 ATOM 1093 CA SER 38 3.521 38.920 25.764 1.00 0.96 ATOM 1094 C SER 38 3.219 38.855 27.167 1.00 0.96 ATOM 1095 O SER 38 3.978 39.373 27.983 1.00 0.96 ATOM 1096 CB SER 38 2.818 40.161 25.114 1.00 0.96 ATOM 1098 OG SER 38 1.419 39.943 25.074 1.00 0.96 ATOM 1100 N SER 39 2.131 38.221 27.450 1.00 0.96 ATOM 1101 CA SER 39 1.575 38.070 28.822 1.00 0.96 ATOM 1102 C SER 39 2.516 37.277 29.626 1.00 0.96 ATOM 1103 O SER 39 2.492 37.352 30.853 1.00 0.96 ATOM 1104 CB SER 39 0.200 37.423 28.751 1.00 0.96 ATOM 1106 OG SER 39 0.281 36.089 28.281 1.00 0.96 ATOM 1108 N PHE 40 3.363 36.504 28.807 1.00 0.95 ATOM 1109 CA PHE 40 4.274 35.612 29.339 1.00 0.95 ATOM 1110 C PHE 40 5.714 35.951 29.298 1.00 0.95 ATOM 1111 O PHE 40 6.539 35.199 29.809 1.00 0.95 ATOM 1112 CB PHE 40 4.075 34.192 28.680 1.00 0.95 ATOM 1113 CD1 PHE 40 5.646 34.053 26.729 1.00 0.95 ATOM 1114 CD2 PHE 40 3.334 34.414 26.293 1.00 0.95 ATOM 1115 CE1 PHE 40 5.905 34.080 25.372 1.00 0.95 ATOM 1116 CE2 PHE 40 3.591 34.443 24.936 1.00 0.95 ATOM 1117 CG PHE 40 4.357 34.222 27.206 1.00 0.95 ATOM 1118 CZ PHE 40 4.878 34.276 24.475 1.00 0.95 ATOM 1120 N ILE 41 6.027 37.148 28.667 1.00 0.97 ATOM 1121 CA ILE 41 7.508 37.509 28.587 1.00 0.97 ATOM 1122 C ILE 41 7.962 38.612 29.538 1.00 0.97 ATOM 1123 O ILE 41 7.136 39.208 30.228 1.00 0.97 ATOM 1124 CB ILE 41 7.866 37.909 27.131 1.00 0.97 ATOM 1125 CD1 ILE 41 7.394 40.412 27.253 1.00 0.97 ATOM 1126 CG1 ILE 41 6.983 39.074 26.678 1.00 0.97 ATOM 1127 CG2 ILE 41 7.665 36.749 26.168 1.00 0.97 ATOM 1129 N GLY 42 9.207 38.920 29.608 1.00 1.00 ATOM 1130 CA GLY 42 9.632 39.848 30.715 1.00 1.00 ATOM 1131 C GLY 42 9.033 41.222 30.846 1.00 1.00 ATOM 1132 O GLY 42 8.454 41.546 31.881 1.00 1.00 ATOM 1134 N ARG 43 9.129 42.037 29.872 1.00 1.00 ATOM 1135 CA ARG 43 8.604 43.455 30.036 1.00 1.00 ATOM 1136 C ARG 43 8.121 43.984 28.662 1.00 1.00 ATOM 1137 O ARG 43 8.516 43.454 27.626 1.00 1.00 ATOM 1138 CB ARG 43 9.689 44.345 30.600 1.00 1.00 ATOM 1139 CD ARG 43 12.013 45.279 30.449 1.00 1.00 ATOM 1141 NE ARG 43 11.708 46.694 30.262 1.00 1.00 ATOM 1142 CG ARG 43 10.976 44.381 29.794 1.00 1.00 ATOM 1143 NH1 ARG 43 13.564 47.419 31.411 1.00 1.00 ATOM 1144 NH2 ARG 43 12.104 48.945 30.509 1.00 1.00 ATOM 1149 CZ ARG 43 12.460 47.687 30.727 1.00 1.00 ATOM 1151 N SER 44 7.233 45.084 28.759 1.00 1.02 ATOM 1152 CA SER 44 7.009 46.009 27.576 1.00 1.02 ATOM 1153 C SER 44 5.778 45.604 26.903 1.00 1.02 ATOM 1154 O SER 44 5.609 44.430 26.581 1.00 1.02 ATOM 1155 CB SER 44 8.221 45.944 26.662 1.00 1.02 ATOM 1157 OG SER 44 9.379 46.484 27.275 1.00 1.02 ATOM 1159 N LYS 45 4.951 46.644 26.709 1.00 1.01 ATOM 1160 CA LYS 45 3.570 46.336 26.363 1.00 1.01 ATOM 1161 C LYS 45 3.417 46.645 24.842 1.00 1.01 ATOM 1162 O LYS 45 2.558 46.068 24.179 1.00 1.01 ATOM 1163 CB LYS 45 2.597 47.166 27.159 1.00 1.01 ATOM 1164 CD LYS 45 2.259 45.479 28.986 1.00 1.01 ATOM 1165 CE LYS 45 2.205 45.255 30.489 1.00 1.01 ATOM 1166 CG LYS 45 2.675 46.902 28.654 1.00 1.01 ATOM 1167 NZ LYS 45 1.860 43.847 30.829 1.00 1.01 TER END