####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 334), selected 44 , name T0953s2TS348_2-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS348_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 3 - 23 4.77 18.92 LCS_AVERAGE: 43.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 8 - 15 1.83 27.32 LONGEST_CONTINUOUS_SEGMENT: 8 10 - 17 1.39 26.66 LCS_AVERAGE: 12.81 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 5 - 9 0.76 25.42 LONGEST_CONTINUOUS_SEGMENT: 5 10 - 14 0.75 26.92 LONGEST_CONTINUOUS_SEGMENT: 5 11 - 15 0.85 27.37 LCS_AVERAGE: 7.70 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 0 3 20 0 0 4 4 4 5 5 8 9 10 11 14 15 16 21 22 22 23 25 26 LCS_GDT V 3 V 3 3 3 21 0 3 3 3 3 5 8 12 14 17 17 18 19 20 21 22 25 25 28 30 LCS_GDT Q 4 Q 4 3 7 21 1 3 3 6 7 8 8 12 14 17 17 18 20 24 27 28 28 30 30 31 LCS_GDT G 5 G 5 5 7 21 2 4 5 6 7 8 11 13 14 17 17 18 19 22 26 28 28 30 30 31 LCS_GDT P 6 P 6 5 7 21 4 4 5 8 10 10 11 13 14 17 17 18 19 23 27 28 28 30 30 31 LCS_GDT W 7 W 7 5 7 21 4 4 5 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT V 8 V 8 5 8 21 4 4 5 6 7 9 10 13 14 17 17 18 20 24 27 28 28 30 30 31 LCS_GDT G 9 G 9 5 8 21 4 4 5 6 7 8 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT S 10 S 10 5 8 21 3 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT S 11 S 11 5 8 21 3 5 6 7 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT Y 12 Y 12 5 8 21 3 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT V 13 V 13 5 8 21 3 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT A 14 A 14 5 8 21 3 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT E 15 E 15 5 8 21 3 4 5 6 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT T 16 T 16 3 8 21 3 3 5 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT G 17 G 17 3 8 21 2 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT Q 18 Q 18 3 5 21 4 5 6 8 8 9 11 13 14 17 17 20 20 24 27 28 28 30 30 31 LCS_GDT N 19 N 19 3 5 21 4 4 4 5 7 9 10 11 13 16 16 17 20 24 27 28 28 30 30 31 LCS_GDT W 20 W 20 3 5 21 4 4 4 5 7 9 10 13 14 17 17 18 19 20 21 25 27 28 30 31 LCS_GDT A 21 A 21 3 5 21 3 4 5 5 5 7 9 11 13 16 16 17 20 24 27 28 28 30 30 31 LCS_GDT S 22 S 22 3 5 21 3 4 5 5 5 7 10 12 13 16 17 20 20 24 27 28 28 30 30 31 LCS_GDT L 23 L 23 3 4 21 3 3 4 5 7 9 10 12 13 16 17 20 20 24 27 28 28 30 30 31 LCS_GDT A 24 A 24 3 4 19 3 4 5 5 7 9 10 11 13 16 16 20 20 24 27 28 28 30 30 31 LCS_GDT A 25 A 25 3 4 19 4 4 6 8 8 9 10 12 13 16 16 20 20 24 27 28 28 30 30 31 LCS_GDT N 26 N 26 3 5 19 3 5 6 8 8 9 10 12 13 16 17 20 20 24 27 28 28 30 30 31 LCS_GDT E 27 E 27 3 5 19 3 4 5 5 5 7 10 11 12 14 16 17 20 23 27 28 28 30 30 31 LCS_GDT L 28 L 28 3 5 19 3 3 4 5 6 7 10 11 12 14 16 16 18 19 20 22 23 25 28 30 LCS_GDT R 29 R 29 3 5 19 3 3 4 5 7 9 10 11 13 16 16 17 20 23 27 28 28 30 30 31 LCS_GDT V 30 V 30 3 5 19 3 3 5 8 8 9 10 12 13 16 16 20 20 24 27 28 28 30 30 31 LCS_GDT T 31 T 31 3 4 19 3 3 4 8 8 9 10 12 13 16 16 20 20 24 27 28 28 30 30 31 LCS_GDT E 32 E 32 3 4 19 2 5 6 8 8 9 10 12 13 16 16 20 20 24 27 28 28 30 30 31 LCS_GDT R 33 R 33 3 6 19 2 3 3 5 6 8 10 12 13 14 16 20 20 24 27 28 28 30 30 31 LCS_GDT P 34 P 34 3 6 19 0 3 3 5 5 8 8 9 11 12 14 18 20 22 24 26 28 30 30 31 LCS_GDT F 35 F 35 3 6 19 2 3 3 5 6 8 8 9 12 13 16 18 20 22 24 26 28 30 30 31 LCS_GDT W 36 W 36 3 6 19 1 3 3 5 6 8 8 9 11 12 14 16 18 19 20 22 24 27 28 30 LCS_GDT I 37 I 37 4 6 16 3 4 4 5 5 7 8 9 11 11 12 14 16 16 18 21 23 24 27 29 LCS_GDT S 38 S 38 4 6 16 3 4 4 4 6 8 8 9 11 11 13 14 17 18 20 21 23 26 27 30 LCS_GDT S 39 S 39 4 5 15 3 4 4 4 6 8 8 9 11 11 12 12 13 15 16 21 23 25 27 30 LCS_GDT F 40 F 40 4 4 14 3 4 4 4 6 8 8 9 11 11 12 12 13 14 14 16 18 19 23 25 LCS_GDT I 41 I 41 3 4 14 3 3 3 3 4 8 8 9 11 11 12 12 13 14 14 16 18 20 23 25 LCS_GDT G 42 G 42 3 4 14 1 3 3 4 5 6 8 9 11 11 11 12 13 14 14 16 18 20 23 25 LCS_GDT R 43 R 43 3 4 14 1 3 3 4 6 7 8 9 11 11 11 12 13 13 14 15 15 15 17 18 LCS_GDT S 44 S 44 0 4 14 0 0 1 3 4 5 6 9 10 10 11 11 13 13 14 15 15 15 16 18 LCS_GDT K 45 K 45 0 3 14 0 0 0 3 3 5 6 9 10 10 10 11 13 13 13 13 14 14 14 14 LCS_AVERAGE LCS_A: 21.28 ( 7.70 12.81 43.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 8 10 10 11 13 14 17 17 20 20 24 27 28 28 30 30 31 GDT PERCENT_AT 9.09 11.36 13.64 18.18 22.73 22.73 25.00 29.55 31.82 38.64 38.64 45.45 45.45 54.55 61.36 63.64 63.64 68.18 68.18 70.45 GDT RMS_LOCAL 0.06 0.75 0.99 1.32 1.71 1.71 2.43 2.88 3.21 3.68 3.68 4.59 4.56 5.30 5.74 5.86 5.80 6.13 6.13 6.28 GDT RMS_ALL_AT 21.13 26.92 13.09 12.90 25.96 25.96 24.77 23.43 20.40 21.72 21.72 12.62 12.44 12.59 12.60 12.78 12.50 12.82 12.82 12.73 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 13.474 0 0.302 0.382 15.151 0.000 0.000 - LGA V 3 V 3 6.665 0 0.598 0.977 9.163 0.000 0.000 5.554 LGA Q 4 Q 4 7.573 0 0.584 0.521 16.810 0.000 0.000 15.868 LGA G 5 G 5 3.960 0 0.493 0.493 5.360 7.727 7.727 - LGA P 6 P 6 2.740 0 0.101 0.361 5.603 18.636 10.909 5.603 LGA W 7 W 7 3.461 1 0.048 1.083 15.070 26.364 7.532 - LGA V 8 V 8 4.028 0 0.621 1.207 8.270 14.545 8.312 8.270 LGA G 9 G 9 3.564 0 0.498 0.498 4.310 26.364 26.364 - LGA S 10 S 10 2.964 0 0.272 0.674 5.317 35.000 24.242 5.317 LGA S 11 S 11 2.250 0 0.358 0.730 3.645 49.545 39.394 2.854 LGA Y 12 Y 12 2.611 1 0.673 1.329 12.780 29.091 9.848 - LGA V 13 V 13 2.768 0 0.028 0.045 4.943 32.727 20.779 4.943 LGA A 14 A 14 2.274 0 0.225 0.215 2.853 51.364 46.545 - LGA E 15 E 15 1.054 0 0.754 1.258 4.690 55.909 45.657 2.928 LGA T 16 T 16 2.722 0 0.614 0.544 7.155 42.273 24.156 6.325 LGA G 17 G 17 1.283 0 0.217 0.217 3.041 46.364 46.364 - LGA Q 18 Q 18 6.021 0 0.384 1.080 11.032 1.364 0.606 11.032 LGA N 19 N 19 9.369 0 0.692 1.347 13.616 0.000 0.000 11.151 LGA W 20 W 20 7.374 1 0.209 1.055 10.979 0.000 0.779 - LGA A 21 A 21 12.746 0 0.667 0.652 15.568 0.000 0.000 - LGA S 22 S 22 15.084 0 0.599 0.855 17.138 0.000 0.000 16.679 LGA L 23 L 23 9.724 0 0.462 1.591 11.612 0.000 0.000 5.189 LGA A 24 A 24 13.595 0 0.332 0.344 16.952 0.000 0.000 - LGA A 25 A 25 18.052 0 0.603 0.588 20.052 0.000 0.000 - LGA N 26 N 26 16.081 0 0.468 0.551 16.727 0.000 0.000 16.233 LGA E 27 E 27 17.675 0 0.692 1.369 21.699 0.000 0.000 14.898 LGA L 28 L 28 24.378 0 0.067 0.108 28.047 0.000 0.000 26.895 LGA R 29 R 29 24.928 2 0.265 1.227 28.805 0.000 0.000 - LGA V 30 V 30 26.499 0 0.533 0.524 27.638 0.000 0.000 27.638 LGA T 31 T 31 29.710 0 0.230 1.030 32.658 0.000 0.000 32.658 LGA E 32 E 32 32.828 0 0.057 1.260 36.789 0.000 0.000 36.789 LGA R 33 R 33 31.384 2 0.246 1.392 34.639 0.000 0.000 - LGA P 34 P 34 32.908 0 0.230 0.250 32.926 0.000 0.000 32.750 LGA F 35 F 35 32.995 0 0.616 1.280 33.654 0.000 0.000 31.575 LGA W 36 W 36 33.881 1 0.669 0.537 36.244 0.000 0.000 - LGA I 37 I 37 32.379 0 0.093 0.835 33.698 0.000 0.000 31.226 LGA S 38 S 38 33.413 0 0.102 0.170 35.835 0.000 0.000 32.576 LGA S 39 S 39 35.875 0 0.111 0.676 38.229 0.000 0.000 34.104 LGA F 40 F 40 36.690 0 0.344 0.995 40.097 0.000 0.000 29.851 LGA I 41 I 41 39.719 0 0.542 0.522 42.892 0.000 0.000 42.511 LGA G 42 G 42 43.494 0 0.125 0.125 46.833 0.000 0.000 - LGA R 43 R 43 42.805 2 0.624 0.896 49.189 0.000 0.000 - LGA S 44 S 44 42.349 0 0.194 0.236 43.530 0.000 0.000 42.052 LGA K 45 K 45 44.098 0 0.378 0.969 44.872 0.000 0.000 44.645 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 334 97.09 44 28 SUMMARY(RMSD_GDC): 11.380 11.224 12.438 9.938 7.255 2.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 13 2.88 30.682 25.641 0.436 LGA_LOCAL RMSD: 2.879 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 23.431 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 11.380 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.544605 * X + -0.490659 * Y + -0.680190 * Z + 3.904803 Y_new = -0.036889 * X + -0.796214 * Y + 0.603889 * Z + 5.361051 Z_new = -0.837881 * X + 0.353972 * Y + 0.415522 * Z + -4.604445 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.073961 0.993390 0.705581 [DEG: -176.1250 56.9171 40.4268 ] ZXZ: -2.296844 1.142280 -1.171078 [DEG: -131.5994 65.4478 -67.0978 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS348_2-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS348_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 13 2.88 25.641 11.38 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS348_2-D1 PFRMAT TS TARGET T0953s2 MODEL 2 PARENT N/A ATOM 9 N ALA 2 3.947 44.219 4.165 1.00 6.84 ATOM 10 CA ALA 2 4.798 43.282 3.446 1.00 6.39 ATOM 11 C ALA 2 5.968 42.768 4.343 1.00 3.85 ATOM 12 O ALA 2 6.999 43.423 4.236 1.00 3.39 ATOM 13 CB ALA 2 5.345 43.913 2.187 1.00 8.13 ATOM 14 N VAL 3 5.574 42.385 5.580 1.00 3.26 ATOM 15 CA VAL 3 6.076 41.137 6.229 1.00 3.24 ATOM 16 C VAL 3 5.399 40.042 5.421 1.00 3.28 ATOM 17 O VAL 3 5.908 38.956 5.260 1.00 3.88 ATOM 18 CB VAL 3 5.702 41.083 7.706 1.00 2.36 ATOM 19 CG1 VAL 3 6.316 42.252 8.431 1.00 2.26 ATOM 20 CG2 VAL 3 4.206 41.126 7.836 1.00 3.22 ATOM 21 N GLN 4 4.285 40.390 4.799 1.00 4.13 ATOM 22 CA GLN 4 3.591 39.463 3.936 1.00 4.18 ATOM 23 C GLN 4 4.542 39.038 2.815 1.00 3.82 ATOM 24 O GLN 4 4.706 37.869 2.570 1.00 5.87 ATOM 25 CB GLN 4 2.337 40.127 3.382 1.00 6.82 ATOM 26 CG GLN 4 1.270 40.347 4.435 1.00 8.39 ATOM 27 CD GLN 4 0.131 41.200 3.940 1.00 7.40 ATOM 28 OE1 GLN 4 0.242 41.906 2.932 1.00 7.10 ATOM 29 NE2 GLN 4 -0.984 41.153 4.655 1.00 7.21 ATOM 30 N GLY 5 5.284 39.933 2.194 1.00 1.90 ATOM 31 CA GLY 5 6.201 39.416 1.192 1.00 0.62 ATOM 32 C GLY 5 7.084 38.428 1.908 1.00 1.87 ATOM 33 O GLY 5 7.077 37.245 1.602 1.00 4.15 ATOM 34 N PRO 6 7.782 38.906 2.937 1.00 1.13 ATOM 35 CA PRO 6 8.637 38.199 3.856 1.00 1.17 ATOM 36 C PRO 6 7.910 37.084 4.563 1.00 1.59 ATOM 37 O PRO 6 8.486 36.456 5.445 1.00 3.27 ATOM 38 CB PRO 6 9.112 39.292 4.812 1.00 1.06 ATOM 39 CG PRO 6 9.027 40.552 3.995 1.00 0.46 ATOM 40 CD PRO 6 7.832 40.358 3.120 1.00 1.11 ATOM 41 N TRP 7 6.647 36.880 4.225 1.00 2.13 ATOM 42 CA TRP 7 5.830 35.792 4.677 1.00 3.38 ATOM 43 C TRP 7 5.275 35.074 3.385 1.00 4.28 ATOM 44 O TRP 7 4.046 35.079 3.267 1.00 6.14 ATOM 45 CB TRP 7 4.620 36.226 5.510 1.00 3.99 ATOM 46 CG TRP 7 4.860 36.780 6.856 1.00 3.72 ATOM 47 CD1 TRP 7 5.983 36.723 7.610 1.00 3.35 ATOM 48 CD2 TRP 7 3.880 37.479 7.638 1.00 4.30 ATOM 49 NE1 TRP 7 5.768 37.343 8.822 1.00 3.17 ATOM 50 CE2 TRP 7 4.481 37.808 8.849 1.00 3.88 ATOM 51 CE3 TRP 7 2.547 37.843 7.409 1.00 5.48 ATOM 52 CZ2 TRP 7 3.796 38.487 9.844 1.00 4.62 ATOM 53 CZ3 TRP 7 1.858 38.523 8.397 1.00 6.38 ATOM 54 N VAL 8 6.014 34.393 2.374 1.00 3.28 ATOM 55 CA VAL 8 7.415 33.952 1.867 1.00 3.50 ATOM 56 C VAL 8 7.582 32.437 2.426 1.00 5.33 ATOM 57 O VAL 8 8.043 32.443 3.561 1.00 6.57 ATOM 58 CB VAL 8 8.646 34.701 2.406 1.00 3.27 ATOM 59 CG1 VAL 8 9.882 34.187 1.749 1.00 4.74 ATOM 60 CG2 VAL 8 8.877 34.336 3.839 1.00 2.85 ATOM 61 N GLY 9 6.692 31.329 2.169 1.00 6.18 ATOM 62 CA GLY 9 5.155 31.085 2.281 1.00 5.98 ATOM 63 C GLY 9 4.796 31.241 3.752 1.00 4.55 ATOM 64 O GLY 9 4.127 30.399 4.346 1.00 5.53 ATOM 65 N SER 10 5.242 32.372 4.281 1.00 2.62 ATOM 66 CA SER 10 5.168 32.806 5.654 1.00 1.16 ATOM 67 C SER 10 6.535 32.306 6.279 1.00 3.07 ATOM 68 O SER 10 7.348 33.209 6.509 1.00 5.15 ATOM 69 CB SER 10 3.936 32.237 6.252 1.00 2.05 ATOM 70 OG SER 10 2.790 32.665 5.546 1.00 3.10 ATOM 71 N SER 11 7.004 31.129 5.747 1.00 2.98 ATOM 72 CA SER 11 7.519 30.100 6.704 1.00 1.93 ATOM 73 C SER 11 6.694 30.499 7.918 1.00 3.18 ATOM 74 O SER 11 5.503 30.196 8.003 1.00 3.72 ATOM 75 CB SER 11 9.011 30.185 6.962 1.00 1.10 ATOM 76 OG SER 11 9.338 31.374 7.626 1.00 1.67 ATOM 77 N TYR 12 7.310 31.283 8.796 1.00 4.19 ATOM 78 CA TYR 12 6.682 31.844 9.954 1.00 6.97 ATOM 79 C TYR 12 5.242 32.176 9.550 1.00 7.53 ATOM 80 O TYR 12 5.212 33.074 8.723 1.00 7.90 ATOM 81 CB TYR 12 7.448 33.103 10.360 1.00 9.07 ATOM 82 CG TYR 12 8.839 32.814 10.873 1.00 10.57 ATOM 83 CD1 TYR 12 9.029 32.440 12.187 1.00 10.78 ATOM 84 CD2 TYR 12 9.927 32.922 10.025 1.00 12.31 ATOM 85 CE1 TYR 12 10.292 32.172 12.666 1.00 12.74 ATOM 86 CE2 TYR 12 11.200 32.654 10.498 1.00 13.87 ATOM 87 CZ TYR 12 11.383 32.282 11.815 1.00 14.11 ATOM 88 N VAL 13 4.345 32.204 10.562 1.00 8.21 ATOM 89 CA VAL 13 2.942 31.660 10.414 1.00 7.59 ATOM 90 C VAL 13 3.026 30.187 10.731 1.00 6.21 ATOM 91 O VAL 13 2.206 29.650 11.449 1.00 6.25 ATOM 92 CB VAL 13 2.338 31.905 9.047 1.00 9.59 ATOM 93 CG1 VAL 13 0.991 31.237 8.949 1.00 10.76 ATOM 94 CG2 VAL 13 2.198 33.443 8.814 1.00 10.69 ATOM 95 N ALA 14 4.096 29.576 10.221 1.00 5.54 ATOM 96 CA ALA 14 4.615 28.270 10.638 1.00 6.30 ATOM 97 C ALA 14 5.463 28.648 11.865 1.00 6.58 ATOM 98 O ALA 14 6.141 27.848 12.510 1.00 7.63 ATOM 99 CB ALA 14 5.436 27.599 9.556 1.00 7.11 ATOM 100 N GLU 15 5.448 29.953 12.105 1.00 6.17 ATOM 101 CA GLU 15 6.033 30.609 13.238 1.00 4.39 ATOM 102 C GLU 15 5.263 29.787 14.208 1.00 2.26 ATOM 103 O GLU 15 4.119 29.492 13.890 1.00 1.10 ATOM 104 CB GLU 15 5.636 32.086 13.327 1.00 6.02 ATOM 105 CG GLU 15 6.195 32.872 14.489 1.00 8.20 ATOM 106 CD GLU 15 5.839 34.336 14.381 1.00 8.42 ATOM 107 OE1 GLU 15 5.151 34.693 13.448 1.00 9.43 ATOM 108 OE2 GLU 15 6.253 35.094 15.223 1.00 8.04 ATOM 109 N THR 16 5.833 29.367 15.320 1.00 2.89 ATOM 110 CA THR 16 5.067 28.488 16.175 1.00 3.81 ATOM 111 C THR 16 3.626 29.159 16.208 1.00 4.22 ATOM 112 O THR 16 3.566 30.109 16.984 1.00 4.62 ATOM 113 CB THR 16 5.694 28.456 17.570 1.00 4.76 ATOM 114 OG1 THR 16 5.674 29.775 18.099 1.00 4.82 ATOM 115 CG2 THR 16 7.096 27.955 17.515 1.00 5.84 ATOM 116 N GLY 17 2.443 28.788 15.421 1.00 4.50 ATOM 117 CA GLY 17 2.029 27.952 14.163 1.00 3.80 ATOM 118 C GLY 17 2.977 26.683 14.095 1.00 2.99 ATOM 119 O GLY 17 3.381 26.418 12.963 1.00 3.60 ATOM 120 N GLN 18 3.434 25.856 15.187 1.00 2.83 ATOM 121 CA GLN 18 3.068 25.411 16.629 1.00 2.12 ATOM 122 C GLN 18 2.747 26.471 17.685 1.00 1.03 ATOM 123 O GLN 18 3.460 26.681 18.652 1.00 1.11 ATOM 124 CB GLN 18 4.200 24.559 17.208 1.00 2.93 ATOM 125 CG GLN 18 4.390 23.222 16.512 1.00 4.36 ATOM 126 CD GLN 18 5.540 22.424 17.096 1.00 4.49 ATOM 127 OE1 GLN 18 6.504 22.990 17.619 1.00 3.82 ATOM 128 NE2 GLN 18 5.446 21.102 17.011 1.00 5.65 ATOM 129 N ASN 19 1.600 27.051 17.447 1.00 1.13 ATOM 130 CA ASN 19 0.720 27.983 18.164 1.00 0.96 ATOM 131 C ASN 19 -0.293 28.133 16.997 1.00 3.58 ATOM 132 O ASN 19 0.071 28.637 15.948 1.00 5.03 ATOM 133 CB ASN 19 1.382 29.276 18.605 1.00 1.76 ATOM 134 CG ASN 19 0.484 30.121 19.467 1.00 3.16 ATOM 135 OD1 ASN 19 -0.746 30.041 19.366 1.00 3.97 ATOM 136 ND2 ASN 19 1.075 30.926 20.312 1.00 5.03 ATOM 137 N TRP 20 -1.541 27.694 17.129 1.00 4.45 ATOM 138 CA TRP 20 -2.137 27.191 15.872 1.00 5.32 ATOM 139 C TRP 20 -1.084 26.063 15.944 1.00 5.39 ATOM 140 O TRP 20 -0.013 26.122 15.337 1.00 4.88 ATOM 141 CB TRP 20 -1.962 28.018 14.585 1.00 7.33 ATOM 142 CG TRP 20 -2.650 27.368 13.423 1.00 7.83 ATOM 143 CD1 TRP 20 -3.903 27.585 12.936 1.00 8.87 ATOM 144 CD2 TRP 20 -2.096 26.286 12.638 1.00 7.79 ATOM 145 NE1 TRP 20 -4.153 26.731 11.879 1.00 9.71 ATOM 146 CE2 TRP 20 -3.058 25.926 11.695 1.00 9.03 ATOM 147 CE3 TRP 20 -0.878 25.600 12.672 1.00 7.01 ATOM 148 CZ2 TRP 20 -2.840 24.904 10.782 1.00 9.59 ATOM 149 CZ3 TRP 20 -0.658 24.576 11.767 1.00 7.29 ATOM 150 N ALA 21 -1.229 25.219 16.961 1.00 6.48 ATOM 151 CA ALA 21 -0.233 24.207 17.200 1.00 8.36 ATOM 152 C ALA 21 -0.260 23.389 15.867 1.00 8.79 ATOM 153 O ALA 21 -0.891 23.972 14.996 1.00 10.09 ATOM 154 CB ALA 21 -0.584 23.351 18.390 1.00 9.03 ATOM 155 N SER 22 0.811 22.708 15.409 1.00 8.03 ATOM 156 CA SER 22 0.293 21.498 14.708 1.00 7.66 ATOM 157 C SER 22 -1.113 21.552 15.404 1.00 6.01 ATOM 158 O SER 22 -1.206 20.791 16.350 1.00 5.44 ATOM 159 CB SER 22 1.071 20.228 14.987 1.00 8.98 ATOM 160 OG SER 22 0.474 19.126 14.361 1.00 11.24 ATOM 161 N LEU 23 -2.226 21.839 14.661 1.00 5.90 ATOM 162 CA LEU 23 -3.174 22.742 15.387 1.00 5.06 ATOM 163 C LEU 23 -4.281 22.010 16.187 1.00 4.10 ATOM 164 O LEU 23 -5.400 22.367 15.863 1.00 3.36 ATOM 165 CB LEU 23 -3.851 23.750 14.486 1.00 6.30 ATOM 166 CG LEU 23 -5.011 24.437 15.221 1.00 6.91 ATOM 167 CD1 LEU 23 -4.585 24.749 16.656 1.00 8.58 ATOM 168 CD2 LEU 23 -5.706 25.728 14.863 1.00 5.96 ATOM 169 N ALA 24 -4.139 21.130 17.311 1.00 4.17 ATOM 170 CA ALA 24 -3.127 20.433 18.249 1.00 4.29 ATOM 171 C ALA 24 -2.514 19.007 17.770 1.00 4.51 ATOM 172 O ALA 24 -2.045 18.355 18.698 1.00 5.53 ATOM 173 CB ALA 24 -3.792 20.228 19.591 1.00 4.35 ATOM 174 N ALA 25 -2.441 18.399 16.459 1.00 4.80 ATOM 175 CA ALA 25 -2.778 18.688 14.990 1.00 3.87 ATOM 176 C ALA 25 -4.251 18.976 14.828 1.00 2.81 ATOM 177 O ALA 25 -5.062 18.132 15.166 1.00 2.48 ATOM 178 CB ALA 25 -2.369 17.507 14.128 1.00 3.87 ATOM 179 N ASN 26 -4.618 20.130 14.271 1.00 2.94 ATOM 180 CA ASN 26 -6.055 20.423 14.220 1.00 2.99 ATOM 181 C ASN 26 -6.566 19.830 15.580 1.00 3.16 ATOM 182 O ASN 26 -6.018 20.090 16.645 1.00 3.05 ATOM 183 CB ASN 26 -6.717 19.818 13.030 1.00 3.92 ATOM 184 CG ASN 26 -6.184 20.374 11.737 1.00 2.67 ATOM 185 OD1 ASN 26 -6.082 21.596 11.542 1.00 2.99 ATOM 186 ND2 ASN 26 -5.835 19.490 10.855 1.00 2.39 ATOM 187 N GLU 27 -7.516 18.940 15.558 1.00 4.19 ATOM 188 CA GLU 27 -7.688 18.252 16.812 1.00 3.95 ATOM 189 C GLU 27 -7.670 16.802 16.440 1.00 1.82 ATOM 190 O GLU 27 -8.156 16.419 15.367 1.00 2.61 ATOM 191 CB GLU 27 -8.993 18.634 17.515 1.00 6.13 ATOM 192 CG GLU 27 -9.084 20.099 17.918 1.00 8.00 ATOM 193 CD GLU 27 -10.377 20.437 18.606 1.00 9.98 ATOM 194 OE1 GLU 27 -11.220 19.576 18.701 1.00 10.91 ATOM 195 OE2 GLU 27 -10.522 21.556 19.038 1.00 10.83 ATOM 196 N LEU 28 -7.101 15.988 17.284 1.00 0.98 ATOM 197 CA LEU 28 -7.138 14.530 17.131 1.00 0.89 ATOM 198 C LEU 28 -6.797 14.128 15.745 1.00 1.81 ATOM 199 O LEU 28 -7.102 13.022 15.341 1.00 3.79 ATOM 200 CB LEU 28 -8.571 14.094 17.427 1.00 1.02 ATOM 201 CG LEU 28 -9.107 14.483 18.789 1.00 0.99 ATOM 202 CD1 LEU 28 -10.558 14.072 18.863 1.00 3.06 ATOM 203 CD2 LEU 28 -8.282 13.817 19.867 1.00 1.83 ATOM 204 N ARG 29 -6.143 14.986 14.992 1.00 0.62 ATOM 205 CA ARG 29 -5.542 15.542 13.827 1.00 0.80 ATOM 206 C ARG 29 -6.596 16.151 12.916 1.00 1.84 ATOM 207 O ARG 29 -6.301 17.001 12.075 1.00 2.89 ATOM 208 CB ARG 29 -4.850 14.491 12.961 1.00 1.21 ATOM 209 CG ARG 29 -4.143 15.126 11.756 1.00 0.75 ATOM 210 CD ARG 29 -3.578 14.157 10.787 1.00 1.11 ATOM 211 NE ARG 29 -2.584 13.285 11.347 1.00 0.60 ATOM 212 CZ ARG 29 -1.302 13.620 11.568 1.00 1.54 ATOM 213 N VAL 30 -7.802 15.620 12.977 1.00 1.96 ATOM 214 CA VAL 30 -8.947 16.110 12.262 1.00 1.84 ATOM 215 C VAL 30 -10.142 15.736 13.140 1.00 1.50 ATOM 216 O VAL 30 -10.786 16.548 13.789 1.00 1.26 ATOM 217 CB VAL 30 -9.102 15.402 10.907 1.00 2.11 ATOM 218 CG1 VAL 30 -10.369 15.852 10.229 1.00 2.98 ATOM 219 CG2 VAL 30 -7.894 15.652 10.035 1.00 2.60 ATOM 220 N THR 31 -10.373 14.436 13.134 1.00 1.97 ATOM 221 CA THR 31 -11.314 13.702 13.936 1.00 4.00 ATOM 222 C THR 31 -10.227 12.822 14.680 1.00 5.11 ATOM 223 O THR 31 -10.416 12.692 15.869 1.00 6.93 ATOM 224 CB THR 31 -12.300 12.859 13.120 1.00 4.66 ATOM 225 OG1 THR 31 -13.018 13.714 12.218 1.00 5.86 ATOM 226 CG2 THR 31 -13.267 12.156 14.029 1.00 7.14 ATOM 227 N GLU 32 -9.019 12.251 14.120 1.00 5.04 ATOM 228 CA GLU 32 -8.262 12.030 12.795 1.00 5.58 ATOM 229 C GLU 32 -9.169 11.124 11.829 1.00 4.64 ATOM 230 O GLU 32 -9.683 10.149 12.367 1.00 6.27 ATOM 231 CB GLU 32 -6.897 11.358 13.008 1.00 7.98 ATOM 232 CG GLU 32 -6.047 11.205 11.751 1.00 10.13 ATOM 233 CD GLU 32 -4.666 10.664 12.058 1.00 12.40 ATOM 234 OE1 GLU 32 -4.435 10.260 13.166 1.00 12.93 ATOM 235 OE2 GLU 32 -3.828 10.699 11.191 1.00 13.70 ATOM 236 N ARG 33 -9.446 11.314 10.453 1.00 3.45 ATOM 237 CA ARG 33 -9.350 12.319 9.304 1.00 2.26 ATOM 238 C ARG 33 -10.280 11.761 8.319 1.00 2.04 ATOM 239 O ARG 33 -9.787 11.239 7.340 1.00 2.67 ATOM 240 CB ARG 33 -7.947 12.434 8.723 1.00 4.06 ATOM 241 CG ARG 33 -7.395 11.168 8.074 1.00 5.69 ATOM 242 CD ARG 33 -6.022 11.384 7.534 1.00 7.68 ATOM 243 NE ARG 33 -6.030 12.311 6.402 1.00 9.20 ATOM 244 CZ ARG 33 -4.934 12.758 5.755 1.00 11.38 ATOM 245 N PRO 34 -11.605 11.757 8.555 1.00 2.78 ATOM 246 CA PRO 34 -12.530 11.075 7.688 1.00 2.75 ATOM 247 C PRO 34 -11.916 11.590 6.430 1.00 1.78 ATOM 248 O PRO 34 -11.941 12.796 6.239 1.00 2.44 ATOM 249 CB PRO 34 -13.859 11.685 8.077 1.00 3.93 ATOM 250 CG PRO 34 -13.648 12.076 9.548 1.00 4.48 ATOM 251 CD PRO 34 -12.199 12.558 9.602 1.00 4.28 ATOM 252 N PHE 35 -11.253 10.743 5.641 1.00 1.99 ATOM 253 CA PHE 35 -10.424 11.303 4.567 1.00 1.58 ATOM 254 C PHE 35 -11.191 12.622 4.012 1.00 1.92 ATOM 255 O PHE 35 -10.455 13.590 3.812 1.00 3.24 ATOM 256 CB PHE 35 -10.150 10.261 3.507 1.00 1.55 ATOM 257 CG PHE 35 -9.187 9.238 3.961 1.00 1.33 ATOM 258 CD1 PHE 35 -9.536 7.898 4.008 1.00 1.79 ATOM 259 CD2 PHE 35 -7.920 9.612 4.365 1.00 0.95 ATOM 260 CE1 PHE 35 -8.627 6.951 4.448 1.00 2.01 ATOM 261 CE2 PHE 35 -7.009 8.675 4.806 1.00 1.25 ATOM 262 CZ PHE 35 -7.362 7.341 4.847 1.00 1.80 ATOM 263 N TRP 36 -12.617 12.789 3.764 1.00 1.87 ATOM 264 CA TRP 36 -13.955 12.004 3.890 1.00 1.56 ATOM 265 C TRP 36 -14.159 10.924 2.707 1.00 1.31 ATOM 266 O TRP 36 -15.170 10.244 2.837 1.00 2.67 ATOM 267 CB TRP 36 -15.164 12.953 3.922 1.00 3.59 ATOM 268 CG TRP 36 -15.332 13.720 5.163 1.00 4.38 ATOM 269 CD1 TRP 36 -14.878 14.976 5.410 1.00 6.16 ATOM 270 CD2 TRP 36 -16.057 13.316 6.339 1.00 4.07 ATOM 271 NE1 TRP 36 -15.248 15.374 6.667 1.00 7.11 ATOM 272 CE2 TRP 36 -15.970 14.371 7.251 1.00 5.68 ATOM 273 CE3 TRP 36 -16.761 12.161 6.690 1.00 3.17 ATOM 274 CZ2 TRP 36 -16.554 14.304 8.503 1.00 5.88 ATOM 275 CZ3 TRP 36 -17.348 12.094 7.948 1.00 3.11 ATOM 276 N ILE 37 -13.345 10.668 1.567 1.00 2.27 ATOM 277 CA ILE 37 -12.008 11.016 0.900 1.00 4.04 ATOM 278 C ILE 37 -11.536 12.555 1.065 1.00 3.10 ATOM 279 O ILE 37 -10.328 12.705 1.109 1.00 2.66 ATOM 280 CB ILE 37 -12.018 10.641 -0.561 1.00 6.68 ATOM 281 CG1 ILE 37 -12.206 9.122 -0.669 1.00 8.06 ATOM 282 CG2 ILE 37 -10.762 11.088 -1.253 1.00 8.37 ATOM 283 CD1 ILE 37 -11.144 8.338 0.031 1.00 9.35 ATOM 284 N SER 38 -12.334 13.758 1.060 1.00 3.23 ATOM 285 CA SER 38 -13.783 14.235 0.995 1.00 3.92 ATOM 286 C SER 38 -14.106 14.298 -0.458 1.00 5.04 ATOM 287 O SER 38 -15.225 14.576 -0.850 1.00 6.86 ATOM 288 CB SER 38 -13.986 15.603 1.616 1.00 4.39 ATOM 289 OG SER 38 -13.339 16.595 0.866 1.00 3.98 ATOM 290 N SER 39 -13.118 13.980 -1.283 1.00 4.60 ATOM 291 CA SER 39 -13.301 14.023 -2.724 1.00 3.24 ATOM 292 C SER 39 -14.465 13.166 -2.965 1.00 2.61 ATOM 293 O SER 39 -15.109 13.283 -4.001 1.00 4.06 ATOM 294 CB SER 39 -12.074 13.554 -3.452 1.00 3.10 ATOM 295 OG SER 39 -11.002 14.404 -3.208 1.00 4.16 ATOM 296 N PHE 40 -14.769 12.291 -1.998 1.00 1.90 ATOM 297 CA PHE 40 -15.494 11.210 -1.364 1.00 3.02 ATOM 298 C PHE 40 -15.184 10.096 -2.332 1.00 2.92 ATOM 299 O PHE 40 -16.007 9.233 -2.629 1.00 4.07 ATOM 300 CB PHE 40 -16.992 11.482 -1.253 1.00 3.73 ATOM 301 CG PHE 40 -17.354 12.638 -0.352 1.00 4.56 ATOM 302 CD1 PHE 40 -17.779 13.843 -0.880 1.00 4.53 ATOM 303 CD2 PHE 40 -17.280 12.512 1.037 1.00 5.60 ATOM 304 CE1 PHE 40 -18.112 14.901 -0.050 1.00 5.45 ATOM 305 CE2 PHE 40 -17.623 13.570 1.862 1.00 6.38 ATOM 306 CZ PHE 40 -18.033 14.760 1.319 1.00 6.27 ATOM 307 N ILE 41 -13.968 10.243 -2.848 1.00 2.82 ATOM 308 CA ILE 41 -13.307 9.566 -3.946 1.00 3.24 ATOM 309 C ILE 41 -13.614 10.848 -4.859 1.00 3.05 ATOM 310 O ILE 41 -12.631 11.473 -5.221 1.00 4.79 ATOM 311 CB ILE 41 -13.975 8.235 -4.335 1.00 5.07 ATOM 312 CG1 ILE 41 -13.884 7.239 -3.163 1.00 6.81 ATOM 313 CG2 ILE 41 -13.335 7.665 -5.535 1.00 5.16 ATOM 314 CD1 ILE 41 -14.724 6.016 -3.352 1.00 8.76 ATOM 315 N GLY 42 -14.939 11.403 -5.173 1.00 2.45 ATOM 316 CA GLY 42 -16.451 11.007 -5.119 1.00 3.29 ATOM 317 C GLY 42 -16.482 10.074 -6.389 1.00 3.96 ATOM 318 O GLY 42 -17.477 9.404 -6.605 1.00 4.93 ATOM 319 N ARG 43 -15.375 10.067 -7.274 1.00 4.53 ATOM 320 CA ARG 43 -13.989 10.444 -7.829 1.00 3.97 ATOM 321 C ARG 43 -14.101 12.028 -7.853 1.00 1.49 ATOM 322 O ARG 43 -13.079 12.705 -7.780 1.00 1.61 ATOM 323 CB ARG 43 -13.635 9.677 -9.097 1.00 6.66 ATOM 324 CG ARG 43 -13.325 8.172 -8.810 1.00 9.02 ATOM 325 CD ARG 43 -13.018 7.349 -9.998 1.00 11.61 ATOM 326 NE ARG 43 -12.635 5.989 -9.639 1.00 12.13 ATOM 327 CZ ARG 43 -13.490 4.954 -9.469 1.00 13.64 ATOM 328 N SER 44 -15.378 12.633 -7.829 1.00 0.86 ATOM 329 CA SER 44 -16.903 12.792 -7.812 1.00 1.44 ATOM 330 C SER 44 -16.957 12.499 -9.291 1.00 2.65 ATOM 331 O SER 44 -16.466 13.409 -9.920 1.00 4.45 ATOM 332 CB SER 44 -17.379 14.187 -7.462 1.00 2.29 ATOM 333 OG SER 44 -16.995 14.547 -6.170 1.00 2.99 ATOM 334 N LYS 45 -16.530 11.221 -9.510 1.00 2.20 ATOM 335 CA LYS 45 -16.560 10.733 -10.900 1.00 2.39 ATOM 336 C LYS 45 -15.497 11.894 -11.255 1.00 2.96 ATOM 337 O LYS 45 -14.469 11.830 -10.576 1.00 3.39 ATOM 338 CB LYS 45 -17.913 10.805 -11.611 1.00 2.20 ATOM 339 CG LYS 45 -19.019 10.000 -10.943 1.00 0.88 ATOM 340 CD LYS 45 -20.303 10.043 -11.757 1.00 2.85 ATOM 341 CE LYS 45 -21.412 9.247 -11.086 1.00 2.23 ATOM 342 NZ LYS 45 -22.684 9.306 -11.856 1.00 4.62 TER END