####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS257_5-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS257_5-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 6 - 26 4.80 21.35 LONGEST_CONTINUOUS_SEGMENT: 21 7 - 27 4.81 20.85 LCS_AVERAGE: 40.60 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 19 - 27 1.97 24.44 LONGEST_CONTINUOUS_SEGMENT: 9 27 - 35 1.90 25.91 LONGEST_CONTINUOUS_SEGMENT: 9 28 - 36 1.57 26.73 LCS_AVERAGE: 16.32 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 20 - 27 0.43 24.34 LCS_AVERAGE: 11.98 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 5 9 3 3 3 4 5 6 6 6 6 7 7 8 8 8 9 9 9 9 9 10 LCS_GDT V 3 V 3 4 5 9 3 3 3 4 5 6 6 6 6 7 7 8 8 8 9 9 9 9 9 12 LCS_GDT Q 4 Q 4 4 5 9 3 3 4 4 5 6 6 6 6 7 7 8 8 8 9 11 12 15 17 19 LCS_GDT G 5 G 5 4 5 13 3 3 4 4 5 6 6 6 6 7 8 8 9 12 16 18 22 22 23 23 LCS_GDT P 6 P 6 4 5 21 0 3 4 4 5 6 7 7 9 12 14 17 21 21 22 22 23 24 26 27 LCS_GDT W 7 W 7 4 5 21 0 3 4 4 5 6 7 7 10 13 16 18 21 21 22 22 23 24 26 27 LCS_GDT V 8 V 8 3 4 21 0 3 4 4 4 7 7 8 9 13 15 18 21 21 22 22 23 24 26 27 LCS_GDT G 9 G 9 6 6 21 4 5 6 6 7 8 8 10 12 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT S 10 S 10 6 6 21 4 5 6 6 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT S 11 S 11 6 6 21 4 5 6 7 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT Y 12 Y 12 6 6 21 4 5 6 6 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT V 13 V 13 6 6 21 4 5 6 7 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT A 14 A 14 6 6 21 3 4 6 7 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT E 15 E 15 4 6 21 3 4 4 4 6 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT T 16 T 16 4 6 21 3 4 4 4 6 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT G 17 G 17 4 6 21 3 4 4 7 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT Q 18 Q 18 4 6 21 3 3 4 7 7 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT N 19 N 19 4 9 21 3 3 4 4 6 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT W 20 W 20 8 9 21 7 8 8 8 8 9 10 10 12 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT A 21 A 21 8 9 21 7 8 8 8 8 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT S 22 S 22 8 9 21 7 8 8 8 8 8 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT L 23 L 23 8 9 21 7 8 8 8 8 8 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT A 24 A 24 8 9 21 7 8 8 8 8 8 10 10 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT A 25 A 25 8 9 21 7 8 8 8 8 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 LCS_GDT N 26 N 26 8 9 21 7 8 8 8 8 9 10 11 13 14 15 18 21 21 22 22 23 24 26 27 LCS_GDT E 27 E 27 8 9 21 5 8 8 8 8 9 10 10 12 14 15 17 18 20 22 22 23 24 26 27 LCS_GDT L 28 L 28 3 9 16 3 3 6 8 9 9 10 10 11 12 13 17 18 20 21 21 23 24 26 27 LCS_GDT R 29 R 29 4 9 16 3 4 6 8 9 9 10 10 11 12 15 17 18 20 21 21 23 24 26 27 LCS_GDT V 30 V 30 4 9 16 3 4 6 8 9 9 10 10 11 12 13 14 17 20 21 21 23 24 26 27 LCS_GDT T 31 T 31 5 9 16 3 4 6 8 9 9 10 10 11 12 13 17 18 20 21 21 23 24 26 27 LCS_GDT E 32 E 32 5 9 16 3 4 6 8 9 9 10 10 11 13 13 14 17 20 20 21 23 24 25 27 LCS_GDT R 33 R 33 5 9 16 3 4 6 8 9 9 10 10 11 13 13 14 14 15 15 18 21 23 24 26 LCS_GDT P 34 P 34 5 9 16 2 4 6 8 9 9 10 10 11 12 13 14 14 15 15 16 16 16 18 21 LCS_GDT F 35 F 35 5 9 16 3 4 5 8 9 9 10 10 11 13 13 14 14 15 15 16 16 16 18 20 LCS_GDT W 36 W 36 5 9 16 4 4 5 8 9 9 10 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT I 37 I 37 5 7 16 4 4 5 6 7 7 9 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT S 38 S 38 5 7 16 4 4 5 6 7 7 8 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT S 39 S 39 5 7 16 4 4 5 6 7 7 8 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT F 40 F 40 5 7 16 4 4 5 6 7 7 8 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT I 41 I 41 5 7 16 4 4 5 6 7 7 8 10 11 13 13 14 14 15 15 16 16 16 18 19 LCS_GDT G 42 G 42 5 7 15 3 4 5 5 7 7 8 10 11 13 13 14 14 14 15 16 16 16 18 19 LCS_GDT R 43 R 43 5 6 15 3 4 5 5 6 7 8 10 11 13 13 14 14 14 15 15 15 16 16 17 LCS_GDT S 44 S 44 5 6 15 3 4 5 5 6 7 8 10 11 13 13 14 14 14 15 15 15 16 16 17 LCS_GDT K 45 K 45 5 6 15 3 4 5 5 6 7 8 10 11 13 13 14 14 14 15 15 15 16 16 17 LCS_AVERAGE LCS_A: 22.97 ( 11.98 16.32 40.60 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 8 8 9 9 10 11 14 15 16 18 21 21 22 22 23 24 26 27 GDT PERCENT_AT 15.91 18.18 18.18 18.18 20.45 20.45 22.73 25.00 31.82 34.09 36.36 40.91 47.73 47.73 50.00 50.00 52.27 54.55 59.09 61.36 GDT RMS_LOCAL 0.32 0.43 0.43 0.43 1.57 1.57 2.02 2.60 3.23 3.41 3.67 4.13 4.80 4.80 5.05 5.05 5.45 5.73 6.20 6.44 GDT RMS_ALL_AT 24.26 24.34 24.34 24.34 26.73 26.73 26.15 20.97 20.82 20.97 21.00 21.03 21.35 21.35 20.96 20.96 20.29 19.83 19.30 19.00 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 33.313 0 0.643 0.617 35.336 0.000 0.000 - LGA V 3 V 3 28.126 0 0.628 1.352 30.360 0.000 0.000 28.264 LGA Q 4 Q 4 24.328 0 0.058 1.043 27.295 0.000 0.000 24.909 LGA G 5 G 5 21.934 0 0.331 0.331 22.686 0.000 0.000 - LGA P 6 P 6 17.513 0 0.680 0.621 19.606 0.000 0.000 18.881 LGA W 7 W 7 10.797 0 0.377 1.167 13.262 0.000 0.000 9.552 LGA V 8 V 8 10.912 0 0.641 1.367 15.080 0.000 0.000 15.080 LGA G 9 G 9 5.418 0 0.535 0.535 6.946 1.818 1.818 - LGA S 10 S 10 2.547 0 0.044 0.579 3.453 35.909 31.515 2.974 LGA S 11 S 11 2.995 0 0.049 0.664 4.628 23.636 17.879 4.628 LGA Y 12 Y 12 4.696 0 0.039 1.189 8.587 6.364 2.121 8.587 LGA V 13 V 13 1.663 0 0.580 1.314 3.832 37.727 38.961 2.097 LGA A 14 A 14 2.989 0 0.612 0.592 5.636 33.636 26.909 - LGA E 15 E 15 3.231 0 0.015 1.399 6.161 23.182 10.505 5.988 LGA T 16 T 16 3.526 0 0.121 0.860 6.519 20.909 12.208 5.903 LGA G 17 G 17 1.774 0 0.616 0.616 3.651 40.909 40.909 - LGA Q 18 Q 18 0.358 0 0.644 0.958 7.377 55.455 26.667 6.682 LGA N 19 N 19 6.283 0 0.047 1.098 9.665 2.727 1.364 9.402 LGA W 20 W 20 8.305 0 0.624 0.441 18.481 0.000 0.000 18.481 LGA A 21 A 21 5.691 0 0.047 0.049 6.969 12.273 9.818 - LGA S 22 S 22 3.028 0 0.033 0.632 4.904 39.091 27.273 4.904 LGA L 23 L 23 2.233 0 0.020 0.855 7.182 29.091 20.455 7.182 LGA A 24 A 24 4.951 0 0.030 0.032 5.612 4.545 3.636 - LGA A 25 A 25 2.675 0 0.034 0.031 6.421 16.818 18.909 - LGA N 26 N 26 7.539 0 0.040 1.194 10.855 0.000 0.909 4.099 LGA E 27 E 27 10.551 0 0.632 1.099 14.724 0.000 0.000 13.670 LGA L 28 L 28 13.416 0 0.356 0.898 17.109 0.000 0.000 17.109 LGA R 29 R 29 14.199 0 0.390 1.411 21.995 0.000 0.000 21.995 LGA V 30 V 30 15.863 0 0.125 1.018 18.222 0.000 0.000 15.893 LGA T 31 T 31 16.226 0 0.132 0.838 18.646 0.000 0.000 17.089 LGA E 32 E 32 18.115 0 0.027 0.973 25.688 0.000 0.000 25.688 LGA R 33 R 33 15.547 0 0.663 1.279 18.991 0.000 0.000 18.991 LGA P 34 P 34 20.396 0 0.673 0.655 22.913 0.000 0.000 19.966 LGA F 35 F 35 23.766 0 0.611 1.227 25.591 0.000 0.000 24.970 LGA W 36 W 36 25.431 0 0.629 0.466 27.366 0.000 0.000 24.120 LGA I 37 I 37 30.022 0 0.088 1.050 33.708 0.000 0.000 28.456 LGA S 38 S 38 35.589 0 0.113 0.149 37.010 0.000 0.000 34.562 LGA S 39 S 39 32.174 0 0.138 0.240 32.773 0.000 0.000 27.490 LGA F 40 F 40 32.507 0 0.075 1.522 35.902 0.000 0.000 28.399 LGA I 41 I 41 39.403 0 0.612 1.410 42.472 0.000 0.000 42.472 LGA G 42 G 42 42.254 0 0.578 0.578 42.254 0.000 0.000 - LGA R 43 R 43 40.784 0 0.183 1.241 41.463 0.000 0.000 38.492 LGA S 44 S 44 40.140 0 0.045 0.608 42.126 0.000 0.000 42.126 LGA K 45 K 45 37.493 0 0.660 0.866 40.072 0.000 0.000 34.048 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 17.352 17.253 17.213 8.729 6.633 2.130 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 11 2.60 27.841 25.382 0.407 LGA_LOCAL RMSD: 2.605 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 20.969 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 17.352 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.641810 * X + -0.310827 * Y + 0.701047 * Z + -121.848282 Y_new = 0.399874 * X + -0.915701 * Y + -0.039913 * Z + 105.068451 Z_new = 0.654355 * X + 0.254714 * Y + 0.711997 * Z + 128.227325 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.584403 -0.713329 0.343559 [DEG: 148.0754 -40.8708 19.6845 ] ZXZ: 1.513925 0.778458 1.199583 [DEG: 86.7415 44.6023 68.7310 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS257_5-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS257_5-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 11 2.60 25.382 17.35 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS257_5-D1 PFRMAT TS TARGET T0953s2 MODEL 5 PARENT N/A ATOM 12 N ALA 2 9.366 17.087 -14.054 1.00 15.00 N ATOM 14 CA ALA 2 9.762 16.062 -13.072 1.00 15.00 C ATOM 15 CB ALA 2 10.719 15.053 -13.712 1.00 15.00 C ATOM 16 C ALA 2 10.409 16.681 -11.826 1.00 15.00 C ATOM 17 O ALA 2 10.235 16.159 -10.717 1.00 15.00 O ATOM 18 N VAL 3 11.148 17.784 -12.021 1.00 15.00 N ATOM 20 CA VAL 3 11.854 18.512 -10.946 1.00 15.00 C ATOM 21 CB VAL 3 13.328 18.923 -11.410 1.00 15.00 C ATOM 22 CG1 VAL 3 13.312 19.943 -12.568 1.00 15.00 C ATOM 23 CG2 VAL 3 14.187 19.404 -10.227 1.00 15.00 C ATOM 24 C VAL 3 11.029 19.709 -10.396 1.00 15.00 C ATOM 25 O VAL 3 11.029 19.952 -9.183 1.00 15.00 O ATOM 26 N GLN 4 10.345 20.426 -11.297 1.00 15.00 N ATOM 28 CA GLN 4 9.511 21.597 -10.959 1.00 15.00 C ATOM 29 CB GLN 4 9.827 22.795 -11.889 1.00 15.00 C ATOM 30 CG GLN 4 9.937 22.505 -13.401 1.00 15.00 C ATOM 31 CD GLN 4 10.248 23.749 -14.212 1.00 15.00 C ATOM 32 OE1 GLN 4 11.413 24.087 -14.427 1.00 15.00 O ATOM 33 NE2 GLN 4 9.207 24.438 -14.667 1.00 15.00 N ATOM 36 C GLN 4 7.999 21.302 -10.927 1.00 15.00 C ATOM 37 O GLN 4 7.517 20.452 -11.684 1.00 15.00 O ATOM 38 N GLY 5 7.281 22.004 -10.046 1.00 12.64 N ATOM 40 CA GLY 5 5.842 21.830 -9.904 1.00 12.64 C ATOM 41 C GLY 5 5.249 22.728 -8.823 1.00 12.64 C ATOM 42 O GLY 5 5.136 23.934 -9.074 1.00 12.64 O ATOM 43 N PRO 6 4.861 22.202 -7.621 1.00 11.62 N ATOM 44 CD PRO 6 4.784 20.766 -7.266 1.00 11.62 C ATOM 45 CA PRO 6 4.279 23.006 -6.524 1.00 11.62 C ATOM 46 CB PRO 6 3.939 21.949 -5.470 1.00 11.62 C ATOM 47 CG PRO 6 3.643 20.741 -6.282 1.00 11.62 C ATOM 48 C PRO 6 5.209 24.088 -5.932 1.00 11.62 C ATOM 49 O PRO 6 6.437 23.965 -6.020 1.00 11.62 O ATOM 50 N TRP 7 4.603 25.128 -5.341 1.00 9.02 N ATOM 52 CA TRP 7 5.320 26.258 -4.719 1.00 9.02 C ATOM 53 CB TRP 7 4.748 27.605 -5.218 1.00 9.02 C ATOM 54 CG TRP 7 4.883 27.884 -6.735 1.00 9.02 C ATOM 55 CD2 TRP 7 3.970 27.496 -7.788 1.00 9.02 C ATOM 56 CE2 TRP 7 4.496 28.009 -9.008 1.00 9.02 C ATOM 57 CE3 TRP 7 2.758 26.767 -7.822 1.00 9.02 C ATOM 58 CD1 TRP 7 5.889 28.592 -7.355 1.00 9.02 C ATOM 59 NE1 TRP 7 5.660 28.667 -8.706 1.00 9.02 N ATOM 61 CZ2 TRP 7 3.854 27.818 -10.256 1.00 9.02 C ATOM 62 CZ3 TRP 7 2.114 26.574 -9.070 1.00 9.02 C ATOM 63 CH2 TRP 7 2.672 27.102 -10.268 1.00 9.02 C ATOM 64 C TRP 7 5.257 26.202 -3.184 1.00 9.02 C ATOM 65 O TRP 7 4.227 25.810 -2.619 1.00 9.02 O ATOM 66 N VAL 8 6.367 26.581 -2.532 1.00 7.68 N ATOM 68 CA VAL 8 6.503 26.597 -1.060 1.00 7.68 C ATOM 69 CB VAL 8 7.736 25.735 -0.558 1.00 7.68 C ATOM 70 CG1 VAL 8 7.393 24.255 -0.630 1.00 7.68 C ATOM 71 CG2 VAL 8 9.012 26.015 -1.384 1.00 7.68 C ATOM 72 C VAL 8 6.561 28.024 -0.478 1.00 7.68 C ATOM 73 O VAL 8 7.148 28.924 -1.090 1.00 7.68 O ATOM 74 N GLY 9 5.929 28.211 0.685 1.00 6.89 N ATOM 76 CA GLY 9 5.901 29.507 1.351 1.00 6.89 C ATOM 77 C GLY 9 6.385 29.429 2.789 1.00 6.89 C ATOM 78 O GLY 9 6.089 28.451 3.488 1.00 6.89 O ATOM 79 N SER 10 7.127 30.457 3.218 1.00 6.54 N ATOM 81 CA SER 10 7.686 30.564 4.574 1.00 6.54 C ATOM 82 CB SER 10 9.183 30.896 4.511 1.00 6.54 C ATOM 83 OG SER 10 9.899 29.890 3.816 1.00 6.54 O ATOM 85 C SER 10 6.955 31.625 5.413 1.00 6.54 C ATOM 86 O SER 10 6.806 31.459 6.629 1.00 6.54 O ATOM 87 N SER 11 6.503 32.699 4.747 1.00 6.07 N ATOM 89 CA SER 11 5.777 33.831 5.365 1.00 6.07 C ATOM 90 OG SER 11 6.992 35.458 4.019 1.00 6.07 O ATOM 92 C SER 11 4.365 33.485 5.877 1.00 6.07 C ATOM 93 O SER 11 3.948 33.990 6.926 1.00 6.07 O ATOM 94 CB SER 11 5.699 35.007 4.386 1.00 6.07 C ATOM 95 N TYR 12 3.654 32.629 5.127 1.00 5.79 N ATOM 97 CA TYR 12 2.282 32.170 5.443 1.00 5.79 C ATOM 98 CB TYR 12 1.658 31.459 4.218 1.00 5.79 C ATOM 99 CG TYR 12 1.465 32.307 2.953 1.00 5.79 C ATOM 100 CD1 TYR 12 2.474 32.379 1.960 1.00 5.79 C ATOM 101 CE1 TYR 12 2.287 33.135 0.770 1.00 5.79 C ATOM 102 CD2 TYR 12 0.259 33.014 2.722 1.00 5.79 C ATOM 103 CE2 TYR 12 0.063 33.772 1.534 1.00 5.79 C ATOM 104 CZ TYR 12 1.080 33.824 0.568 1.00 5.79 C ATOM 105 OH TYR 12 0.892 34.558 -0.582 1.00 5.79 O ATOM 107 C TYR 12 2.182 31.256 6.679 1.00 5.79 C ATOM 108 O TYR 12 1.215 31.354 7.444 1.00 5.79 O ATOM 109 N VAL 13 3.186 30.383 6.854 1.00 5.52 N ATOM 111 CA VAL 13 3.271 29.425 7.976 1.00 5.52 C ATOM 112 CB VAL 13 3.634 27.962 7.492 1.00 5.52 C ATOM 113 CG1 VAL 13 2.412 27.309 6.861 1.00 5.52 C ATOM 114 CG2 VAL 13 4.805 27.962 6.482 1.00 5.52 C ATOM 115 C VAL 13 4.223 29.879 9.107 1.00 5.52 C ATOM 116 O VAL 13 5.270 30.481 8.832 1.00 5.52 O ATOM 117 N ALA 14 3.831 29.604 10.359 1.00 4.70 N ATOM 119 CA ALA 14 4.604 29.958 11.563 1.00 4.70 C ATOM 120 CB ALA 14 3.734 30.753 12.535 1.00 4.70 C ATOM 121 C ALA 14 5.168 28.708 12.255 1.00 4.70 C ATOM 122 O ALA 14 4.488 27.677 12.321 1.00 4.70 O ATOM 123 N GLU 15 6.407 28.817 12.757 1.00 4.44 N ATOM 125 CA GLU 15 7.133 27.735 13.460 1.00 4.44 C ATOM 126 CB GLU 15 8.620 28.086 13.606 1.00 4.44 C ATOM 127 CG GLU 15 9.407 28.097 12.297 1.00 4.44 C ATOM 128 CD GLU 15 10.869 28.450 12.495 1.00 4.44 C ATOM 129 OE1 GLU 15 11.683 27.526 12.707 1.00 4.44 O ATOM 130 OE2 GLU 15 11.205 29.652 12.436 1.00 4.44 O ATOM 131 C GLU 15 6.552 27.362 14.838 1.00 4.44 C ATOM 132 O GLU 15 6.528 26.178 15.199 1.00 4.44 O ATOM 133 N THR 16 6.090 28.377 15.585 1.00 4.21 N ATOM 135 CA THR 16 5.496 28.231 16.933 1.00 4.21 C ATOM 136 CB THR 16 5.370 29.617 17.649 1.00 4.21 C ATOM 137 OG1 THR 16 6.271 30.554 17.044 1.00 4.21 O ATOM 139 CG2 THR 16 5.726 29.500 19.139 1.00 4.21 C ATOM 140 C THR 16 4.123 27.517 16.914 1.00 4.21 C ATOM 141 O THR 16 3.830 26.706 17.802 1.00 4.21 O ATOM 142 N GLY 17 3.315 27.814 15.890 1.00 4.80 N ATOM 144 CA GLY 17 1.994 27.215 15.747 1.00 4.80 C ATOM 145 C GLY 17 1.109 27.977 14.778 1.00 4.80 C ATOM 146 O GLY 17 1.085 29.214 14.805 1.00 4.80 O ATOM 147 N GLN 18 0.387 27.234 13.928 1.00 3.71 N ATOM 149 CA GLN 18 -0.535 27.775 12.910 1.00 3.71 C ATOM 150 CB GLN 18 -0.943 26.681 11.912 1.00 3.71 C ATOM 151 CG GLN 18 0.178 26.205 10.993 1.00 3.71 C ATOM 152 CD GLN 18 -0.278 25.126 10.030 1.00 3.71 C ATOM 153 OE1 GLN 18 -0.718 25.415 8.917 1.00 3.71 O ATOM 154 NE2 GLN 18 -0.174 23.870 10.454 1.00 3.71 N ATOM 157 C GLN 18 -1.798 28.443 13.488 1.00 3.71 C ATOM 158 O GLN 18 -2.250 29.471 12.968 1.00 3.71 O ATOM 159 N ASN 19 -2.335 27.859 14.571 1.00 3.67 N ATOM 161 CA ASN 19 -3.543 28.342 15.277 1.00 3.67 C ATOM 162 CB ASN 19 -4.025 27.280 16.285 1.00 3.67 C ATOM 163 CG ASN 19 -5.537 27.318 16.521 1.00 3.67 C ATOM 164 OD1 ASN 19 -6.020 28.012 17.419 1.00 3.67 O ATOM 165 ND2 ASN 19 -6.283 26.558 15.723 1.00 3.67 N ATOM 168 C ASN 19 -3.287 29.690 15.988 1.00 3.67 C ATOM 169 O ASN 19 -4.145 30.582 15.952 1.00 3.67 O ATOM 170 N TRP 20 -2.102 29.820 16.606 1.00 3.57 N ATOM 172 CA TRP 20 -1.661 31.032 17.330 1.00 3.57 C ATOM 173 CB TRP 20 -0.387 30.737 18.153 1.00 3.57 C ATOM 174 CG TRP 20 -0.529 29.679 19.274 1.00 3.57 C ATOM 175 CD2 TRP 20 -0.949 29.894 20.641 1.00 3.57 C ATOM 176 CE2 TRP 20 -0.884 28.633 21.300 1.00 3.57 C ATOM 177 CE3 TRP 20 -1.375 31.026 21.375 1.00 3.57 C ATOM 178 CD1 TRP 20 -0.238 28.337 19.178 1.00 3.57 C ATOM 179 NE1 TRP 20 -0.449 27.713 20.384 1.00 3.57 N ATOM 181 CZ2 TRP 20 -1.228 28.467 22.664 1.00 3.57 C ATOM 182 CZ3 TRP 20 -1.721 30.862 22.740 1.00 3.57 C ATOM 183 CH2 TRP 20 -1.642 29.585 23.365 1.00 3.57 C ATOM 184 C TRP 20 -1.410 32.214 16.376 1.00 3.57 C ATOM 185 O TRP 20 -1.767 33.355 16.694 1.00 3.57 O ATOM 186 N ALA 21 -0.813 31.915 15.210 1.00 3.44 N ATOM 188 CA ALA 21 -0.496 32.892 14.149 1.00 3.44 C ATOM 189 CB ALA 21 0.430 32.262 13.114 1.00 3.44 C ATOM 190 C ALA 21 -1.766 33.435 13.469 1.00 3.44 C ATOM 191 O ALA 21 -1.867 34.642 13.215 1.00 3.44 O ATOM 192 N SER 22 -2.722 32.533 13.199 1.00 3.58 N ATOM 194 CA SER 22 -4.018 32.849 12.567 1.00 3.58 C ATOM 195 CB SER 22 -4.738 31.563 12.145 1.00 3.58 C ATOM 196 OG SER 22 -3.988 30.848 11.179 1.00 3.58 O ATOM 198 C SER 22 -4.925 33.686 13.488 1.00 3.58 C ATOM 199 O SER 22 -5.538 34.658 13.033 1.00 3.58 O ATOM 200 N LEU 23 -4.947 33.327 14.783 1.00 3.67 N ATOM 202 CA LEU 23 -5.740 34.003 15.833 1.00 3.67 C ATOM 203 CB LEU 23 -5.733 33.154 17.139 1.00 3.67 C ATOM 204 CG LEU 23 -6.692 33.114 18.372 1.00 3.67 C ATOM 205 CD1 LEU 23 -6.635 34.399 19.215 1.00 3.67 C ATOM 206 CD2 LEU 23 -8.142 32.758 18.000 1.00 3.67 C ATOM 207 C LEU 23 -5.189 35.423 16.092 1.00 3.67 C ATOM 208 O LEU 23 -5.966 36.364 16.286 1.00 3.67 O ATOM 209 N ALA 24 -3.853 35.544 16.096 1.00 3.51 N ATOM 211 CA ALA 24 -3.122 36.812 16.296 1.00 3.51 C ATOM 212 CB ALA 24 -1.645 36.534 16.540 1.00 3.51 C ATOM 213 C ALA 24 -3.293 37.761 15.096 1.00 3.51 C ATOM 214 O ALA 24 -3.389 38.981 15.274 1.00 3.51 O ATOM 215 N ALA 25 -3.323 37.174 13.888 1.00 3.83 N ATOM 217 CA ALA 25 -3.483 37.884 12.603 1.00 3.83 C ATOM 218 CB ALA 25 -3.140 36.954 11.443 1.00 3.83 C ATOM 219 C ALA 25 -4.871 38.514 12.383 1.00 3.83 C ATOM 220 O ALA 25 -4.957 39.671 11.955 1.00 3.83 O ATOM 221 N ASN 26 -5.937 37.752 12.677 1.00 4.15 N ATOM 223 CA ASN 26 -7.338 38.205 12.526 1.00 4.15 C ATOM 224 CB ASN 26 -8.332 37.015 12.541 1.00 4.15 C ATOM 225 CG ASN 26 -8.207 36.111 13.783 1.00 4.15 C ATOM 226 OD1 ASN 26 -8.300 36.571 14.926 1.00 4.15 O ATOM 227 ND2 ASN 26 -8.050 34.814 13.548 1.00 4.15 N ATOM 230 C ASN 26 -7.787 39.305 13.511 1.00 4.15 C ATOM 231 O ASN 26 -8.522 40.218 13.122 1.00 4.15 O ATOM 232 N GLU 27 -7.323 39.205 14.770 1.00 4.15 N ATOM 234 CA GLU 27 -7.609 40.132 15.902 1.00 4.15 C ATOM 235 CG GLU 27 -5.404 41.475 15.797 1.00 4.15 C ATOM 236 CD GLU 27 -4.780 42.846 15.609 1.00 4.15 C ATOM 237 OE1 GLU 27 -4.479 43.210 14.453 1.00 4.15 O ATOM 238 OE2 GLU 27 -4.588 43.557 16.618 1.00 4.15 O ATOM 239 C GLU 27 -9.091 40.332 16.278 1.00 4.15 C ATOM 240 O GLU 27 -9.948 40.438 15.393 1.00 4.15 O ATOM 241 CB GLU 27 -6.926 41.504 15.716 1.00 4.15 C ATOM 242 N LEU 28 -9.357 40.401 17.595 1.00 4.00 N ATOM 244 CA LEU 28 -10.688 40.587 18.241 1.00 4.00 C ATOM 245 CB LEU 28 -10.965 42.088 18.570 1.00 4.00 C ATOM 246 CG LEU 28 -10.881 43.298 17.608 1.00 4.00 C ATOM 247 CD1 LEU 28 -11.847 44.372 18.080 1.00 4.00 C ATOM 248 CD2 LEU 28 -9.457 43.867 17.495 1.00 4.00 C ATOM 249 C LEU 28 -11.941 39.898 17.643 1.00 4.00 C ATOM 250 O LEU 28 -12.511 39.008 18.285 1.00 4.00 O ATOM 251 N ARG 29 -12.327 40.306 16.420 1.00 5.43 N ATOM 253 CA ARG 29 -13.490 39.815 15.627 1.00 5.43 C ATOM 254 CB ARG 29 -13.059 38.802 14.528 1.00 5.43 C ATOM 255 CG ARG 29 -12.243 37.565 14.978 1.00 5.43 C ATOM 256 CD ARG 29 -11.893 36.647 13.807 1.00 5.43 C ATOM 257 NE ARG 29 -13.063 35.959 13.252 1.00 5.43 N ATOM 259 CZ ARG 29 -13.038 35.103 12.230 1.00 5.43 C ATOM 260 NH1 ARG 29 -11.900 34.799 11.614 1.00 5.43 N ATOM 263 NH2 ARG 29 -14.168 34.544 11.818 1.00 5.43 N ATOM 266 C ARG 29 -14.787 39.355 16.343 1.00 5.43 C ATOM 267 O ARG 29 -14.768 38.384 17.114 1.00 5.43 O ATOM 268 N VAL 30 -15.890 40.070 16.077 1.00 6.60 N ATOM 270 CA VAL 30 -17.222 39.795 16.657 1.00 6.60 C ATOM 271 CB VAL 30 -17.925 41.108 17.191 1.00 6.60 C ATOM 272 CG1 VAL 30 -17.293 41.533 18.507 1.00 6.60 C ATOM 273 CG2 VAL 30 -17.837 42.268 16.172 1.00 6.60 C ATOM 274 C VAL 30 -18.161 39.018 15.706 1.00 6.60 C ATOM 275 O VAL 30 -18.133 39.239 14.487 1.00 6.60 O ATOM 276 N THR 31 -18.962 38.104 16.277 1.00 6.76 N ATOM 278 CA THR 31 -19.926 37.265 15.537 1.00 6.76 C ATOM 279 CB THR 31 -19.820 35.758 15.967 1.00 6.76 C ATOM 280 OG1 THR 31 -18.493 35.488 16.436 1.00 6.76 O ATOM 282 CG2 THR 31 -20.110 34.825 14.782 1.00 6.76 C ATOM 283 C THR 31 -21.366 37.784 15.768 1.00 6.76 C ATOM 284 O THR 31 -22.185 37.775 14.840 1.00 6.76 O ATOM 285 N GLU 32 -21.644 38.244 16.998 1.00 6.46 N ATOM 287 CA GLU 32 -22.959 38.778 17.404 1.00 6.46 C ATOM 288 CB GLU 32 -23.511 38.018 18.621 1.00 6.46 C ATOM 289 CG GLU 32 -23.910 36.570 18.344 1.00 6.46 C ATOM 290 CD GLU 32 -24.448 35.865 19.574 1.00 6.46 C ATOM 291 OE1 GLU 32 -23.644 35.256 20.313 1.00 6.46 O ATOM 292 OE2 GLU 32 -25.675 35.914 19.803 1.00 6.46 O ATOM 293 C GLU 32 -22.880 40.280 17.723 1.00 6.46 C ATOM 294 O GLU 32 -21.889 40.741 18.304 1.00 6.46 O ATOM 295 N ARG 33 -23.918 41.026 17.317 1.00 7.55 N ATOM 297 CA ARG 33 -24.025 42.482 17.533 1.00 7.55 C ATOM 298 CB ARG 33 -24.328 43.219 16.216 1.00 7.55 C ATOM 299 CG ARG 33 -23.191 43.204 15.199 1.00 7.55 C ATOM 300 CD ARG 33 -23.575 43.950 13.931 1.00 7.55 C ATOM 301 NE ARG 33 -22.494 43.947 12.942 1.00 7.55 N ATOM 303 CZ ARG 33 -22.551 44.522 11.740 1.00 7.55 C ATOM 304 NH1 ARG 33 -21.502 44.450 10.931 1.00 7.55 N ATOM 307 NH2 ARG 33 -23.641 45.168 11.337 1.00 7.55 N ATOM 310 C ARG 33 -25.043 42.906 18.631 1.00 7.55 C ATOM 311 O ARG 33 -24.751 43.857 19.366 1.00 7.55 O ATOM 312 N PRO 34 -26.234 42.227 18.766 1.00 6.57 N ATOM 313 CD PRO 34 -26.882 41.217 17.889 1.00 6.57 C ATOM 314 CA PRO 34 -27.190 42.647 19.819 1.00 6.57 C ATOM 315 CB PRO 34 -28.458 41.854 19.471 1.00 6.57 C ATOM 316 CG PRO 34 -27.938 40.629 18.772 1.00 6.57 C ATOM 317 C PRO 34 -26.764 42.443 21.300 1.00 6.57 C ATOM 318 O PRO 34 -27.299 43.110 22.195 1.00 6.57 O ATOM 319 N PHE 35 -25.802 41.535 21.522 1.00 7.76 N ATOM 321 CA PHE 35 -25.260 41.191 22.855 1.00 7.76 C ATOM 322 CB PHE 35 -24.405 39.895 22.759 1.00 7.76 C ATOM 323 CG PHE 35 -24.323 39.075 24.053 1.00 7.76 C ATOM 324 CD1 PHE 35 -25.258 38.047 24.320 1.00 7.76 C ATOM 325 CD2 PHE 35 -23.285 39.302 24.989 1.00 7.76 C ATOM 326 CE1 PHE 35 -25.166 37.257 25.500 1.00 7.76 C ATOM 327 CE2 PHE 35 -23.180 38.521 26.173 1.00 7.76 C ATOM 328 CZ PHE 35 -24.122 37.496 26.428 1.00 7.76 C ATOM 329 C PHE 35 -24.440 42.336 23.495 1.00 7.76 C ATOM 330 O PHE 35 -24.596 42.614 24.691 1.00 7.76 O ATOM 331 N TRP 36 -23.597 42.993 22.683 1.00 7.01 N ATOM 333 CA TRP 36 -22.729 44.114 23.104 1.00 7.01 C ATOM 334 CB TRP 36 -21.671 44.415 22.018 1.00 7.01 C ATOM 335 CG TRP 36 -20.647 43.289 21.736 1.00 7.01 C ATOM 336 CD2 TRP 36 -19.394 43.045 22.417 1.00 7.01 C ATOM 337 CE2 TRP 36 -18.785 41.926 21.782 1.00 7.01 C ATOM 338 CE3 TRP 36 -18.726 43.661 23.501 1.00 7.01 C ATOM 339 CD1 TRP 36 -20.730 42.331 20.752 1.00 7.01 C ATOM 340 NE1 TRP 36 -19.622 41.519 20.778 1.00 7.01 N ATOM 342 CZ2 TRP 36 -17.534 41.403 22.193 1.00 7.01 C ATOM 343 CZ3 TRP 36 -17.474 43.140 23.914 1.00 7.01 C ATOM 344 CH2 TRP 36 -16.896 42.020 23.254 1.00 7.01 C ATOM 345 C TRP 36 -23.493 45.401 23.464 1.00 7.01 C ATOM 346 O TRP 36 -23.172 46.048 24.468 1.00 7.01 O ATOM 347 N ILE 37 -24.510 45.739 22.655 1.00 6.69 N ATOM 349 CA ILE 37 -25.368 46.934 22.836 1.00 6.69 C ATOM 350 CB ILE 37 -26.276 47.222 21.546 1.00 6.69 C ATOM 351 CG2 ILE 37 -26.908 48.646 21.608 1.00 6.69 C ATOM 352 CG1 ILE 37 -25.519 46.951 20.210 1.00 6.69 C ATOM 353 CD1 ILE 37 -24.327 47.899 19.780 1.00 6.69 C ATOM 354 C ILE 37 -26.250 46.767 24.099 1.00 6.69 C ATOM 355 O ILE 37 -26.421 47.724 24.865 1.00 6.69 O ATOM 356 N SER 38 -26.759 45.542 24.309 1.00 6.13 N ATOM 358 CA SER 38 -27.613 45.173 25.457 1.00 6.13 C ATOM 359 CB SER 38 -28.263 43.802 25.228 1.00 6.13 C ATOM 360 OG SER 38 -27.292 42.799 24.975 1.00 6.13 O ATOM 362 C SER 38 -26.846 45.191 26.793 1.00 6.13 C ATOM 363 O SER 38 -27.370 45.675 27.803 1.00 6.13 O ATOM 364 N SER 39 -25.614 44.658 26.775 1.00 6.35 N ATOM 366 CA SER 39 -24.707 44.598 27.939 1.00 6.35 C ATOM 367 CB SER 39 -23.538 43.645 27.657 1.00 6.35 C ATOM 368 OG SER 39 -22.853 43.995 26.464 1.00 6.35 O ATOM 370 C SER 39 -24.177 45.984 28.356 1.00 6.35 C ATOM 371 O SER 39 -24.034 46.261 29.552 1.00 6.35 O ATOM 372 N PHE 40 -23.893 46.832 27.354 1.00 6.10 N ATOM 374 CA PHE 40 -23.382 48.209 27.527 1.00 6.10 C ATOM 375 CB PHE 40 -22.852 48.757 26.172 1.00 6.10 C ATOM 376 CG PHE 40 -21.759 49.825 26.287 1.00 6.10 C ATOM 377 CD1 PHE 40 -20.389 49.463 26.302 1.00 6.10 C ATOM 378 CD2 PHE 40 -22.091 51.200 26.342 1.00 6.10 C ATOM 379 CE1 PHE 40 -19.368 50.450 26.370 1.00 6.10 C ATOM 380 CE2 PHE 40 -21.081 52.200 26.410 1.00 6.10 C ATOM 381 CZ PHE 40 -19.716 51.823 26.424 1.00 6.10 C ATOM 382 C PHE 40 -24.429 49.173 28.132 1.00 6.10 C ATOM 383 O PHE 40 -24.095 49.960 29.024 1.00 6.10 O ATOM 384 N ILE 41 -25.674 49.099 27.637 1.00 6.05 N ATOM 386 CA ILE 41 -26.804 49.943 28.091 1.00 6.05 C ATOM 387 CB ILE 41 -27.991 49.931 27.022 1.00 6.05 C ATOM 388 CG2 ILE 41 -28.676 48.535 26.948 1.00 6.05 C ATOM 389 CG1 ILE 41 -28.983 51.088 27.273 1.00 6.05 C ATOM 390 CD1 ILE 41 -29.595 51.709 26.011 1.00 6.05 C ATOM 391 C ILE 41 -27.271 49.612 29.537 1.00 6.05 C ATOM 392 O ILE 41 -27.565 50.525 30.316 1.00 6.05 O ATOM 393 N GLY 42 -27.323 48.316 29.858 1.00 6.79 N ATOM 395 CA GLY 42 -27.743 47.864 31.178 1.00 6.79 C ATOM 396 C GLY 42 -27.932 46.359 31.246 1.00 6.79 C ATOM 397 O GLY 42 -27.009 45.608 30.911 1.00 6.79 O ATOM 398 N ARG 43 -29.141 45.939 31.657 1.00 6.82 N ATOM 400 CA ARG 43 -29.603 44.534 31.821 1.00 6.82 C ATOM 401 CB ARG 43 -30.501 44.078 30.635 1.00 6.82 C ATOM 402 CG ARG 43 -29.926 44.225 29.205 1.00 6.82 C ATOM 403 CD ARG 43 -30.905 43.743 28.137 1.00 6.82 C ATOM 404 NE ARG 43 -32.077 44.613 28.003 1.00 6.82 N ATOM 406 CZ ARG 43 -33.082 44.422 27.147 1.00 6.82 C ATOM 407 NH1 ARG 43 -33.092 43.383 26.318 1.00 6.82 N ATOM 410 NH2 ARG 43 -34.091 45.283 27.121 1.00 6.82 N ATOM 413 C ARG 43 -28.608 43.417 32.234 1.00 6.82 C ATOM 414 O ARG 43 -27.617 43.170 31.534 1.00 6.82 O ATOM 415 N SER 44 -28.900 42.761 33.366 1.00 7.32 N ATOM 417 CA SER 44 -28.083 41.670 33.927 1.00 7.32 C ATOM 418 CB SER 44 -27.824 41.916 35.422 1.00 7.32 C ATOM 419 OG SER 44 -26.885 40.993 35.954 1.00 7.32 O ATOM 421 C SER 44 -28.774 40.309 33.727 1.00 7.32 C ATOM 422 O SER 44 -30.009 40.244 33.679 1.00 7.32 O ATOM 423 N LYS 45 -27.968 39.244 33.611 1.00 7.62 N ATOM 425 CA LYS 45 -28.442 37.860 33.410 1.00 7.62 C ATOM 426 CG LYS 45 -27.943 37.735 30.883 1.00 7.62 C ATOM 427 CD LYS 45 -27.130 37.004 29.820 1.00 7.62 C ATOM 428 CE LYS 45 -27.398 37.544 28.416 1.00 7.62 C ATOM 429 NZ LYS 45 -28.772 37.242 27.912 1.00 7.62 N ATOM 433 C LYS 45 -28.331 37.018 34.692 1.00 7.62 C ATOM 434 O LYS 45 -29.128 36.094 34.898 1.00 7.62 O ATOM 435 CB LYS 45 -27.662 37.179 32.275 1.00 7.62 C TER END