####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS110_3-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS110_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 22 - 45 4.76 19.32 LCS_AVERAGE: 51.65 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 6 - 16 1.94 20.08 LCS_AVERAGE: 20.76 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 9 - 15 0.97 20.05 LONGEST_CONTINUOUS_SEGMENT: 7 24 - 30 0.45 14.00 LCS_AVERAGE: 12.29 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 3 20 3 3 3 3 3 4 7 8 9 14 15 17 19 20 21 23 28 31 33 34 LCS_GDT V 3 V 3 3 7 20 3 3 5 6 6 6 7 9 11 13 15 17 19 19 21 23 24 31 32 34 LCS_GDT Q 4 Q 4 3 7 20 3 3 5 6 6 6 7 9 11 14 15 17 19 20 21 23 30 32 33 34 LCS_GDT G 5 G 5 3 7 20 1 3 5 6 7 9 11 13 13 14 17 20 21 25 27 29 30 32 33 34 LCS_GDT P 6 P 6 3 11 20 0 3 7 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT W 7 W 7 6 11 20 4 5 7 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT V 8 V 8 6 11 20 4 5 8 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT G 9 G 9 7 11 20 4 5 8 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT S 10 S 10 7 11 22 4 5 8 9 11 11 12 13 13 14 19 21 22 25 27 29 30 32 33 34 LCS_GDT S 11 S 11 7 11 22 4 5 8 9 11 11 12 13 15 17 20 21 22 25 27 29 30 32 33 34 LCS_GDT Y 12 Y 12 7 11 22 4 5 8 9 11 11 12 13 15 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT V 13 V 13 7 11 22 4 5 8 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT A 14 A 14 7 11 22 4 5 8 9 11 11 12 13 14 15 16 18 21 23 27 29 30 32 33 34 LCS_GDT E 15 E 15 7 11 22 3 5 8 9 11 11 12 13 13 14 16 18 19 21 23 29 30 32 33 34 LCS_GDT T 16 T 16 4 11 22 3 4 5 8 8 10 12 13 13 14 15 17 18 21 21 29 30 32 33 34 LCS_GDT G 17 G 17 5 9 22 3 4 5 8 8 9 10 11 13 14 16 20 21 25 27 29 30 32 33 34 LCS_GDT Q 18 Q 18 5 6 22 3 4 7 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT N 19 N 19 5 6 22 3 4 5 6 8 10 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT W 20 W 20 6 8 22 5 6 6 7 8 11 12 13 16 18 20 21 22 25 26 27 30 32 33 34 LCS_GDT A 21 A 21 6 8 22 4 6 6 7 8 11 12 13 14 15 20 21 22 25 27 29 30 32 33 34 LCS_GDT S 22 S 22 6 8 24 5 6 6 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT L 23 L 23 6 9 24 5 6 6 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT A 24 A 24 7 9 24 5 7 7 7 8 11 12 13 16 18 19 21 22 25 27 29 30 32 33 34 LCS_GDT A 25 A 25 7 9 24 5 7 7 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT N 26 N 26 7 9 24 5 7 7 7 9 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT E 27 E 27 7 9 24 5 7 7 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT L 28 L 28 7 9 24 5 7 7 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT R 29 R 29 7 9 24 5 7 7 7 8 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT V 30 V 30 7 10 24 5 7 7 8 9 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT T 31 T 31 3 10 24 4 5 5 8 9 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 LCS_GDT E 32 E 32 3 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 25 27 29 30 32 33 34 LCS_GDT R 33 R 33 4 10 24 3 4 6 8 9 10 12 13 16 18 19 21 22 22 23 26 30 32 33 34 LCS_GDT P 34 P 34 4 10 24 3 4 4 4 7 9 11 11 14 16 18 20 22 25 27 29 30 32 33 34 LCS_GDT F 35 F 35 6 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 25 27 29 30 32 33 34 LCS_GDT W 36 W 36 6 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 22 24 26 29 31 32 33 LCS_GDT I 37 I 37 6 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 22 23 26 26 27 28 29 LCS_GDT S 38 S 38 6 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 22 23 26 26 27 28 29 LCS_GDT S 39 S 39 6 10 24 4 5 6 8 9 10 12 13 16 18 19 21 22 22 23 26 26 29 31 33 LCS_GDT F 40 F 40 6 9 24 4 5 6 7 8 10 12 13 16 18 19 21 22 22 23 26 26 28 30 33 LCS_GDT I 41 I 41 6 9 24 4 5 6 7 8 10 12 13 16 18 19 21 22 22 23 26 26 27 28 29 LCS_GDT G 42 G 42 4 9 24 3 4 4 5 8 10 12 13 16 18 19 21 22 22 23 26 26 27 28 29 LCS_GDT R 43 R 43 4 9 24 3 4 4 6 8 10 10 12 15 18 19 21 22 22 23 26 26 27 28 29 LCS_GDT S 44 S 44 3 9 24 3 3 3 5 8 10 10 10 13 16 19 21 22 22 23 26 26 27 28 29 LCS_GDT K 45 K 45 3 4 24 3 3 3 3 5 6 11 13 16 18 19 21 22 22 23 26 26 26 28 28 LCS_AVERAGE LCS_A: 28.24 ( 12.29 20.76 51.65 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 7 8 9 11 11 12 13 16 18 20 21 22 25 27 29 30 32 33 34 GDT PERCENT_AT 11.36 15.91 18.18 20.45 25.00 25.00 27.27 29.55 36.36 40.91 45.45 47.73 50.00 56.82 61.36 65.91 68.18 72.73 75.00 77.27 GDT RMS_LOCAL 0.15 0.45 1.09 1.28 1.61 1.61 1.95 2.48 3.16 3.66 3.87 4.00 4.15 4.84 5.56 5.83 5.99 6.26 6.44 6.59 GDT RMS_ALL_AT 13.24 14.00 19.97 19.81 19.75 19.75 20.01 14.56 19.33 10.57 10.58 10.59 10.55 10.40 10.24 10.23 10.40 10.49 10.60 10.74 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 25.985 0 0.630 0.651 28.397 0.000 0.000 - LGA V 3 V 3 23.738 0 0.575 0.659 24.702 0.000 0.000 23.238 LGA Q 4 Q 4 24.385 0 0.209 1.014 30.422 0.000 0.000 30.422 LGA G 5 G 5 19.706 0 0.573 0.573 22.650 0.000 0.000 - LGA P 6 P 6 22.101 0 1.008 0.993 23.021 0.000 0.000 23.021 LGA W 7 W 7 20.681 0 0.522 1.083 22.728 0.000 0.000 18.411 LGA V 8 V 8 16.213 0 0.266 1.094 17.848 0.000 0.000 15.677 LGA G 9 G 9 13.228 0 0.196 0.196 14.640 0.000 0.000 - LGA S 10 S 10 18.334 0 0.345 0.668 20.846 0.000 0.000 20.813 LGA S 11 S 11 18.498 0 0.168 0.587 20.921 0.000 0.000 20.921 LGA Y 12 Y 12 15.871 0 0.031 1.131 16.366 0.000 0.000 11.806 LGA V 13 V 13 14.106 0 0.178 1.070 15.999 0.000 0.000 15.999 LGA A 14 A 14 16.794 0 0.478 0.503 18.592 0.000 0.000 - LGA E 15 E 15 17.422 0 0.249 1.273 20.752 0.000 0.000 20.752 LGA T 16 T 16 18.826 0 0.599 1.147 19.108 0.000 0.000 17.633 LGA G 17 G 17 17.871 0 0.149 0.149 18.550 0.000 0.000 - LGA Q 18 Q 18 11.408 0 0.259 1.299 13.675 0.000 0.000 12.943 LGA N 19 N 19 7.148 0 0.101 0.993 11.572 0.909 0.455 11.572 LGA W 20 W 20 1.992 0 0.620 0.417 7.048 42.727 12.857 6.754 LGA A 21 A 21 1.802 0 0.088 0.092 2.152 58.182 54.182 - LGA S 22 S 22 0.654 0 0.213 0.224 1.372 82.273 79.394 1.308 LGA L 23 L 23 1.197 0 0.058 0.173 2.631 60.909 51.818 2.514 LGA A 24 A 24 2.431 0 0.570 0.515 2.968 44.545 41.091 - LGA A 25 A 25 3.603 0 0.091 0.088 5.032 27.727 22.182 - LGA N 26 N 26 2.789 0 0.013 0.671 7.439 30.000 15.682 5.767 LGA E 27 E 27 2.430 0 0.152 1.021 7.805 31.818 18.586 6.844 LGA L 28 L 28 3.339 0 0.780 1.416 8.233 23.636 13.182 4.489 LGA R 29 R 29 1.999 0 0.747 1.118 4.986 31.818 19.174 4.145 LGA V 30 V 30 3.770 0 0.533 1.134 7.901 28.636 16.364 7.279 LGA T 31 T 31 0.765 0 0.578 1.126 4.232 54.091 46.494 1.015 LGA E 32 E 32 2.908 0 0.336 1.229 5.061 23.636 26.061 3.132 LGA R 33 R 33 9.369 0 0.892 1.225 14.982 0.000 0.000 14.982 LGA P 34 P 34 11.109 0 0.183 0.468 14.200 0.000 0.000 14.200 LGA F 35 F 35 11.734 0 0.620 1.162 15.979 0.000 0.000 15.979 LGA W 36 W 36 16.230 0 0.112 0.113 24.594 0.000 0.000 24.594 LGA I 37 I 37 17.140 0 0.097 0.388 21.552 0.000 0.000 19.337 LGA S 38 S 38 19.895 0 0.097 0.653 22.111 0.000 0.000 22.111 LGA S 39 S 39 14.376 0 0.119 0.153 16.121 0.000 0.000 11.464 LGA F 40 F 40 12.135 0 0.261 1.219 14.282 0.000 0.000 14.027 LGA I 41 I 41 17.850 0 0.612 1.365 23.341 0.000 0.000 23.341 LGA G 42 G 42 19.370 0 0.287 0.287 19.547 0.000 0.000 - LGA R 43 R 43 16.436 0 0.574 1.364 19.083 0.000 0.000 9.999 LGA S 44 S 44 16.463 0 0.341 0.699 16.514 0.000 0.000 16.296 LGA K 45 K 45 14.635 0 0.693 0.741 19.631 0.000 0.000 19.631 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 9.781 9.627 10.636 12.293 9.489 5.351 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 13 2.48 32.955 29.942 0.504 LGA_LOCAL RMSD: 2.481 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.562 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 9.781 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.303796 * X + -0.163488 * Y + 0.938605 * Z + 1.590720 Y_new = 0.908934 * X + 0.245551 * Y + 0.336963 * Z + 26.858690 Z_new = -0.285565 * X + 0.955498 * Y + 0.074003 * Z + 35.697552 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.893356 0.289596 1.493501 [DEG: 108.4813 16.5926 85.5713 ] ZXZ: 1.915469 1.496726 -0.290416 [DEG: 109.7483 85.7561 -16.6396 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS110_3-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS110_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 13 2.48 29.942 9.78 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS110_3-D1 PFRMAT TS TARGET T0953s2 MODEL 3 PARENT N/A ATOM 12 N ALA 2 -7.959 44.273 -4.849 1.00 0.00 N ATOM 13 CA ALA 2 -6.489 44.040 -4.613 1.00 0.00 C ATOM 14 C ALA 2 -5.342 44.558 -5.485 1.00 0.00 C ATOM 15 O ALA 2 -4.370 45.114 -4.974 1.00 0.00 O ATOM 17 CB ALA 2 -6.188 42.549 -4.567 1.00 0.00 C ATOM 18 N VAL 3 -5.459 44.374 -6.799 1.00 0.00 N ATOM 19 CA VAL 3 -4.511 45.015 -7.683 1.00 0.00 C ATOM 20 C VAL 3 -4.415 46.542 -7.675 1.00 0.00 C ATOM 21 O VAL 3 -3.341 47.100 -7.444 1.00 0.00 O ATOM 23 CB VAL 3 -4.757 44.627 -9.152 1.00 0.00 C ATOM 24 CG1 VAL 3 -3.886 45.463 -10.077 1.00 0.00 C ATOM 25 CG2 VAL 3 -4.493 43.144 -9.363 1.00 0.00 C ATOM 26 N GLN 4 -5.538 47.214 -7.928 1.00 0.00 N ATOM 27 CA GLN 4 -5.560 48.674 -7.711 1.00 0.00 C ATOM 28 C GLN 4 -5.728 48.372 -6.221 1.00 0.00 C ATOM 29 O GLN 4 -6.215 47.303 -5.850 1.00 0.00 O ATOM 31 CB GLN 4 -6.684 49.319 -8.524 1.00 0.00 C ATOM 32 CD GLN 4 -5.300 49.776 -10.587 1.00 0.00 C ATOM 33 CG GLN 4 -6.552 49.129 -10.027 1.00 0.00 C ATOM 34 OE1 GLN 4 -5.061 50.966 -10.384 1.00 0.00 O ATOM 37 NE2 GLN 4 -4.497 48.991 -11.297 1.00 0.00 N ATOM 38 N GLY 5 -5.323 49.314 -5.368 1.00 0.00 N ATOM 39 CA GLY 5 -5.694 49.193 -3.883 1.00 0.00 C ATOM 40 C GLY 5 -6.985 49.654 -3.204 1.00 0.00 C ATOM 41 O GLY 5 -6.945 50.363 -2.198 1.00 0.00 O ATOM 43 N PRO 6 -8.130 49.251 -3.757 1.00 0.00 N ATOM 44 CA PRO 6 -9.444 50.037 -3.627 1.00 0.00 C ATOM 45 C PRO 6 -8.550 49.644 -2.450 1.00 0.00 C ATOM 46 O PRO 6 -7.357 49.390 -2.627 1.00 0.00 O ATOM 47 CB PRO 6 -10.499 49.095 -4.210 1.00 0.00 C ATOM 48 CD PRO 6 -8.397 47.978 -4.462 1.00 0.00 C ATOM 49 CG PRO 6 -9.732 48.192 -5.118 1.00 0.00 C ATOM 50 N TRP 7 -9.126 49.596 -1.249 1.00 0.00 N ATOM 51 CA TRP 7 -8.587 47.402 -1.018 1.00 0.00 C ATOM 52 C TRP 7 -8.613 46.178 -0.100 1.00 0.00 C ATOM 53 O TRP 7 -8.492 46.307 1.120 1.00 0.00 O ATOM 55 CB TRP 7 -7.086 47.194 -1.229 1.00 0.00 C ATOM 58 CG TRP 7 -6.234 47.956 -0.261 1.00 0.00 C ATOM 59 CD1 TRP 7 -6.650 48.905 0.627 1.00 0.00 C ATOM 61 NE1 TRP 7 -5.582 49.383 1.346 1.00 0.00 N ATOM 62 CD2 TRP 7 -4.817 47.835 -0.086 1.00 0.00 C ATOM 63 CE2 TRP 7 -4.444 48.740 0.924 1.00 0.00 C ATOM 64 CH2 TRP 7 -2.178 48.101 0.749 1.00 0.00 C ATOM 65 CZ2 TRP 7 -3.124 48.882 1.350 1.00 0.00 C ATOM 66 CE3 TRP 7 -3.827 47.049 -0.684 1.00 0.00 C ATOM 67 CZ3 TRP 7 -2.521 47.193 -0.259 1.00 0.00 C ATOM 68 N VAL 8 -8.772 44.992 -0.686 1.00 0.00 N ATOM 69 CA VAL 8 -8.124 43.818 0.145 1.00 0.00 C ATOM 70 C VAL 8 -6.855 43.205 0.738 1.00 0.00 C ATOM 71 O VAL 8 -6.911 42.512 1.756 1.00 0.00 O ATOM 73 CB VAL 8 -8.417 42.447 -0.492 1.00 0.00 C ATOM 74 CG1 VAL 8 -9.914 42.180 -0.517 1.00 0.00 C ATOM 75 CG2 VAL 8 -7.837 42.377 -1.896 1.00 0.00 C ATOM 76 N GLY 9 -5.711 43.462 0.103 1.00 0.00 N ATOM 77 CA GLY 9 -4.471 43.096 0.741 1.00 0.00 C ATOM 78 C GLY 9 -3.963 43.740 2.033 1.00 0.00 C ATOM 79 O GLY 9 -3.316 43.082 2.848 1.00 0.00 O ATOM 81 N SER 10 -4.259 45.026 2.217 1.00 0.00 N ATOM 82 CA SER 10 -3.959 45.642 3.482 1.00 0.00 C ATOM 83 C SER 10 -4.662 44.739 4.498 1.00 0.00 C ATOM 84 O SER 10 -4.065 43.791 5.011 1.00 0.00 O ATOM 86 CB SER 10 -4.443 47.093 3.501 1.00 0.00 C ATOM 88 OG SER 10 -4.163 47.709 4.745 1.00 0.00 O ATOM 89 N SER 11 -5.929 45.035 4.787 1.00 0.00 N ATOM 90 CA SER 11 -6.694 44.277 5.787 1.00 0.00 C ATOM 91 C SER 11 -7.121 42.933 5.191 1.00 0.00 C ATOM 92 O SER 11 -7.596 42.053 5.909 1.00 0.00 O ATOM 94 CB SER 11 -7.909 45.080 6.254 1.00 0.00 C ATOM 96 OG SER 11 -8.854 45.230 5.208 1.00 0.00 O ATOM 97 N TYR 12 -6.952 42.780 3.877 1.00 0.00 N ATOM 98 CA TYR 12 -7.292 41.516 3.214 1.00 0.00 C ATOM 99 C TYR 12 -6.340 40.390 3.625 1.00 0.00 C ATOM 100 O TYR 12 -6.760 39.242 3.781 1.00 0.00 O ATOM 102 CB TYR 12 -7.268 41.685 1.693 1.00 0.00 C ATOM 103 CG TYR 12 -7.650 40.437 0.931 1.00 0.00 C ATOM 105 OH TYR 12 -8.716 37.005 -1.160 1.00 0.00 O ATOM 106 CZ TYR 12 -8.361 38.141 -0.469 1.00 0.00 C ATOM 107 CD1 TYR 12 -8.980 40.052 0.816 1.00 0.00 C ATOM 108 CE1 TYR 12 -9.338 38.912 0.123 1.00 0.00 C ATOM 109 CD2 TYR 12 -6.680 39.647 0.328 1.00 0.00 C ATOM 110 CE2 TYR 12 -7.020 38.503 -0.369 1.00 0.00 C ATOM 111 N VAL 13 -5.061 40.720 3.800 1.00 0.00 N ATOM 112 CA VAL 13 -4.206 39.768 4.399 1.00 0.00 C ATOM 113 C VAL 13 -4.259 39.328 5.863 1.00 0.00 C ATOM 114 O VAL 13 -3.821 38.228 6.202 1.00 0.00 O ATOM 116 CB VAL 13 -2.726 40.168 4.252 1.00 0.00 C ATOM 117 CG1 VAL 13 -2.395 41.332 5.175 1.00 0.00 C ATOM 118 CG2 VAL 13 -1.823 38.980 4.543 1.00 0.00 C ATOM 119 N ALA 14 -4.796 40.188 6.729 1.00 0.00 N ATOM 120 CA ALA 14 -5.077 39.724 8.029 1.00 0.00 C ATOM 121 C ALA 14 -5.970 38.529 7.689 1.00 0.00 C ATOM 122 O ALA 14 -5.608 37.692 6.862 1.00 0.00 O ATOM 124 CB ALA 14 -5.724 40.825 8.856 1.00 0.00 C ATOM 125 N GLU 15 -7.138 38.453 8.329 1.00 0.00 N ATOM 126 CA GLU 15 -8.136 37.520 7.798 1.00 0.00 C ATOM 127 C GLU 15 -8.988 37.545 6.526 1.00 0.00 C ATOM 128 O GLU 15 -9.765 36.623 6.276 1.00 0.00 O ATOM 130 CB GLU 15 -9.267 37.314 8.807 1.00 0.00 C ATOM 131 CD GLU 15 -9.553 39.469 10.096 1.00 0.00 C ATOM 132 CG GLU 15 -10.126 38.547 9.036 1.00 0.00 C ATOM 133 OE1 GLU 15 -8.345 39.354 10.391 1.00 0.00 O ATOM 134 OE2 GLU 15 -10.313 40.304 10.631 1.00 0.00 O ATOM 135 N THR 16 -8.839 38.600 5.726 1.00 0.00 N ATOM 136 CA THR 16 -9.689 38.820 4.542 1.00 0.00 C ATOM 137 C THR 16 -9.108 37.498 4.039 1.00 0.00 C ATOM 138 O THR 16 -9.449 36.430 4.549 1.00 0.00 O ATOM 140 CB THR 16 -9.365 40.160 3.856 1.00 0.00 C ATOM 142 OG1 THR 16 -9.605 41.239 4.769 1.00 0.00 O ATOM 143 CG2 THR 16 -10.241 40.357 2.629 1.00 0.00 C ATOM 144 N GLY 17 -8.232 37.569 3.037 1.00 0.00 N ATOM 145 CA GLY 17 -7.355 36.316 2.738 1.00 0.00 C ATOM 146 C GLY 17 -6.131 35.766 3.473 1.00 0.00 C ATOM 147 O GLY 17 -5.553 34.761 3.059 1.00 0.00 O ATOM 149 N GLN 18 -5.739 36.426 4.562 1.00 0.00 N ATOM 150 CA GLN 18 -4.718 35.812 5.441 1.00 0.00 C ATOM 151 C GLN 18 -5.506 35.081 6.529 1.00 0.00 C ATOM 152 O GLN 18 -5.657 35.590 7.641 1.00 0.00 O ATOM 154 CB GLN 18 -3.777 36.883 5.998 1.00 0.00 C ATOM 155 CD GLN 18 -1.711 35.440 6.169 1.00 0.00 C ATOM 156 CG GLN 18 -2.684 36.339 6.904 1.00 0.00 C ATOM 157 OE1 GLN 18 -1.109 35.843 5.174 1.00 0.00 O ATOM 160 NE2 GLN 18 -1.554 34.214 6.657 1.00 0.00 N ATOM 161 N ASN 19 -6.008 33.890 6.209 1.00 0.00 N ATOM 162 CA ASN 19 -6.499 33.017 7.317 1.00 0.00 C ATOM 163 C ASN 19 -5.662 32.565 8.515 1.00 0.00 C ATOM 164 O ASN 19 -6.117 32.632 9.657 1.00 0.00 O ATOM 166 CB ASN 19 -7.032 31.695 6.761 1.00 0.00 C ATOM 167 CG ASN 19 -8.364 31.855 6.055 1.00 0.00 C ATOM 168 OD1 ASN 19 -9.064 32.848 6.247 1.00 0.00 O ATOM 171 ND2 ASN 19 -8.717 30.873 5.233 1.00 0.00 N ATOM 172 N TRP 20 -4.438 32.105 8.251 1.00 0.00 N ATOM 173 CA TRP 20 -3.550 31.568 9.313 1.00 0.00 C ATOM 174 C TRP 20 -3.033 32.766 10.113 1.00 0.00 C ATOM 175 O TRP 20 -2.488 32.600 11.205 1.00 0.00 O ATOM 177 CB TRP 20 -2.414 30.748 8.698 1.00 0.00 C ATOM 180 CG TRP 20 -2.869 29.461 8.081 1.00 0.00 C ATOM 181 CD1 TRP 20 -2.991 29.190 6.749 1.00 0.00 C ATOM 183 NE1 TRP 20 -3.437 27.903 6.566 1.00 0.00 N ATOM 184 CD2 TRP 20 -3.263 28.271 8.772 1.00 0.00 C ATOM 185 CE2 TRP 20 -3.611 27.319 7.796 1.00 0.00 C ATOM 186 CH2 TRP 20 -4.126 25.716 9.451 1.00 0.00 C ATOM 187 CZ2 TRP 20 -4.044 26.036 8.124 1.00 0.00 C ATOM 188 CE3 TRP 20 -3.356 27.915 10.121 1.00 0.00 C ATOM 189 CZ3 TRP 20 -3.787 26.642 10.443 1.00 0.00 C ATOM 190 N ALA 21 -3.207 33.971 9.569 1.00 0.00 N ATOM 191 CA ALA 21 -2.744 35.126 10.215 1.00 0.00 C ATOM 192 C ALA 21 -3.588 35.394 11.463 1.00 0.00 C ATOM 193 O ALA 21 -3.048 35.618 12.547 1.00 0.00 O ATOM 195 CB ALA 21 -2.786 36.315 9.268 1.00 0.00 C ATOM 196 N SER 22 -4.912 35.371 11.308 1.00 0.00 N ATOM 197 CA SER 22 -5.711 35.162 12.575 1.00 0.00 C ATOM 198 C SER 22 -5.852 34.084 13.650 1.00 0.00 C ATOM 199 O SER 22 -6.064 34.393 14.824 1.00 0.00 O ATOM 201 CB SER 22 -7.211 35.248 12.282 1.00 0.00 C ATOM 203 OG SER 22 -7.633 34.174 11.461 1.00 0.00 O ATOM 204 N LEU 23 -5.735 32.818 13.250 1.00 0.00 N ATOM 205 CA LEU 23 -5.684 31.701 14.268 1.00 0.00 C ATOM 206 C LEU 23 -4.549 31.724 15.294 1.00 0.00 C ATOM 207 O LEU 23 -4.733 31.319 16.442 1.00 0.00 O ATOM 209 CB LEU 23 -5.609 30.342 13.570 1.00 0.00 C ATOM 210 CG LEU 23 -6.858 29.903 12.805 1.00 0.00 C ATOM 211 CD1 LEU 23 -6.589 28.623 12.028 1.00 0.00 C ATOM 212 CD2 LEU 23 -8.029 29.709 13.754 1.00 0.00 C ATOM 213 N ALA 24 -3.375 32.199 14.878 1.00 0.00 N ATOM 214 CA ALA 24 -2.140 32.059 15.657 1.00 0.00 C ATOM 215 C ALA 24 -2.311 33.527 16.054 1.00 0.00 C ATOM 216 O ALA 24 -1.594 34.397 15.560 1.00 0.00 O ATOM 218 CB ALA 24 -0.995 31.611 14.760 1.00 0.00 C ATOM 219 N ALA 25 -3.263 33.799 16.946 1.00 0.00 N ATOM 220 CA ALA 25 -3.648 35.177 17.301 1.00 0.00 C ATOM 221 C ALA 25 -2.396 35.603 18.071 1.00 0.00 C ATOM 222 O ALA 25 -1.974 36.757 17.990 1.00 0.00 O ATOM 224 CB ALA 25 -4.948 35.179 18.090 1.00 0.00 C ATOM 225 N ASN 26 -1.806 34.671 18.819 1.00 0.00 N ATOM 226 CA ASN 26 -0.614 34.968 19.538 1.00 0.00 C ATOM 227 C ASN 26 0.548 35.279 18.592 1.00 0.00 C ATOM 228 O ASN 26 1.335 36.192 18.848 1.00 0.00 O ATOM 230 CB ASN 26 -0.249 33.810 20.470 1.00 0.00 C ATOM 231 CG ASN 26 -1.164 33.723 21.676 1.00 0.00 C ATOM 232 OD1 ASN 26 -2.337 33.370 21.553 1.00 0.00 O ATOM 235 ND2 ASN 26 -0.628 34.044 22.848 1.00 0.00 N ATOM 236 N GLU 27 0.655 34.518 17.503 1.00 0.00 N ATOM 237 CA GLU 27 1.714 34.743 16.530 1.00 0.00 C ATOM 238 C GLU 27 1.511 36.107 15.867 1.00 0.00 C ATOM 239 O GLU 27 2.414 36.944 15.868 1.00 0.00 O ATOM 241 CB GLU 27 1.731 33.622 15.488 1.00 0.00 C ATOM 242 CD GLU 27 2.868 32.587 13.484 1.00 0.00 C ATOM 243 CG GLU 27 2.844 33.746 14.461 1.00 0.00 C ATOM 244 OE1 GLU 27 2.007 31.690 13.606 1.00 0.00 O ATOM 245 OE2 GLU 27 3.746 32.576 12.596 1.00 0.00 O ATOM 246 N LEU 28 0.324 36.328 15.303 1.00 0.00 N ATOM 247 CA LEU 28 -0.025 37.738 14.926 1.00 0.00 C ATOM 248 C LEU 28 -0.387 38.058 16.378 1.00 0.00 C ATOM 249 O LEU 28 -0.588 37.150 17.187 1.00 0.00 O ATOM 251 CB LEU 28 -1.111 37.750 13.848 1.00 0.00 C ATOM 252 CG LEU 28 -1.559 39.127 13.354 1.00 0.00 C ATOM 253 CD1 LEU 28 -0.422 39.837 12.634 1.00 0.00 C ATOM 254 CD2 LEU 28 -2.769 39.002 12.439 1.00 0.00 C ATOM 255 N ARG 29 -0.468 39.347 16.705 1.00 0.00 N ATOM 256 CA ARG 29 -0.780 39.769 18.064 1.00 0.00 C ATOM 257 C ARG 29 -2.148 39.814 17.379 1.00 0.00 C ATOM 258 O ARG 29 -2.243 40.135 16.194 1.00 0.00 O ATOM 260 CB ARG 29 0.042 41.002 18.445 1.00 0.00 C ATOM 261 CD ARG 29 2.308 40.083 17.882 1.00 0.00 C ATOM 263 NE ARG 29 3.662 39.810 18.358 1.00 0.00 N ATOM 264 CG ARG 29 1.433 40.683 18.969 1.00 0.00 C ATOM 265 CZ ARG 29 4.560 39.096 17.688 1.00 0.00 C ATOM 268 NH1 ARG 29 5.768 38.899 18.200 1.00 0.00 N ATOM 271 NH2 ARG 29 4.249 38.580 16.506 1.00 0.00 N ATOM 272 N VAL 30 -3.203 39.493 18.125 1.00 0.00 N ATOM 273 CA VAL 30 -4.518 39.084 17.548 1.00 0.00 C ATOM 274 C VAL 30 -5.016 40.521 17.713 1.00 0.00 C ATOM 275 O VAL 30 -6.051 40.893 17.158 1.00 0.00 O ATOM 277 CB VAL 30 -5.156 37.937 18.353 1.00 0.00 C ATOM 278 CG1 VAL 30 -5.688 38.451 19.682 1.00 0.00 C ATOM 279 CG2 VAL 30 -6.266 37.276 17.550 1.00 0.00 C ATOM 280 N THR 31 -4.279 41.328 18.478 1.00 0.00 N ATOM 281 CA THR 31 -4.343 42.871 17.850 1.00 0.00 C ATOM 282 C THR 31 -4.331 43.403 16.416 1.00 0.00 C ATOM 283 O THR 31 -4.590 42.659 15.470 1.00 0.00 O ATOM 285 CB THR 31 -3.191 43.745 18.382 1.00 0.00 C ATOM 287 OG1 THR 31 -3.284 43.846 19.808 1.00 0.00 O ATOM 288 CG2 THR 31 -3.266 45.143 17.788 1.00 0.00 C ATOM 289 N GLU 32 -4.029 44.692 16.258 1.00 0.00 N ATOM 290 CA GLU 32 -3.105 44.849 14.816 1.00 0.00 C ATOM 291 C GLU 32 -1.787 44.075 14.758 1.00 0.00 C ATOM 292 O GLU 32 -1.743 42.891 15.096 1.00 0.00 O ATOM 294 CB GLU 32 -2.774 46.319 14.549 1.00 0.00 C ATOM 295 CD GLU 32 -3.619 48.630 13.979 1.00 0.00 C ATOM 296 CG GLU 32 -3.982 47.176 14.208 1.00 0.00 C ATOM 297 OE1 GLU 32 -3.231 49.306 14.955 1.00 0.00 O ATOM 298 OE2 GLU 32 -3.723 49.093 12.824 1.00 0.00 O ATOM 299 N ARG 33 -0.717 44.743 14.330 1.00 0.00 N ATOM 300 CA ARG 33 0.310 44.053 13.297 1.00 0.00 C ATOM 301 C ARG 33 -0.256 44.512 14.643 1.00 0.00 C ATOM 302 O ARG 33 -0.941 45.533 14.718 1.00 0.00 O ATOM 304 CB ARG 33 0.793 45.069 12.261 1.00 0.00 C ATOM 305 CD ARG 33 0.247 46.579 10.332 1.00 0.00 C ATOM 307 NE ARG 33 -0.804 47.144 9.490 1.00 0.00 N ATOM 308 CG ARG 33 -0.310 45.618 11.370 1.00 0.00 C ATOM 309 CZ ARG 33 -0.580 47.924 8.437 1.00 0.00 C ATOM 312 NH1 ARG 33 -1.600 48.393 7.731 1.00 0.00 N ATOM 315 NH2 ARG 33 0.662 48.233 8.093 1.00 0.00 N ATOM 316 N PRO 34 0.030 43.755 15.703 1.00 0.00 N ATOM 317 CA PRO 34 -0.028 44.524 17.071 1.00 0.00 C ATOM 318 C PRO 34 1.284 45.311 17.054 1.00 0.00 C ATOM 319 O PRO 34 2.365 44.724 16.995 1.00 0.00 O ATOM 320 CB PRO 34 -0.104 43.410 18.118 1.00 0.00 C ATOM 321 CD PRO 34 0.288 42.369 15.998 1.00 0.00 C ATOM 322 CG PRO 34 0.564 42.243 17.471 1.00 0.00 C ATOM 323 N PHE 35 1.186 46.640 17.105 1.00 0.00 N ATOM 324 CA PHE 35 2.487 47.184 18.151 1.00 0.00 C ATOM 325 C PHE 35 3.503 47.338 19.285 1.00 0.00 C ATOM 326 O PHE 35 4.670 46.975 19.133 1.00 0.00 O ATOM 328 CB PHE 35 2.253 48.632 18.588 1.00 0.00 C ATOM 329 CG PHE 35 2.441 49.636 17.486 1.00 0.00 C ATOM 330 CZ PHE 35 2.793 51.491 15.447 1.00 0.00 C ATOM 331 CD1 PHE 35 1.348 50.245 16.893 1.00 0.00 C ATOM 332 CE1 PHE 35 1.521 51.168 15.879 1.00 0.00 C ATOM 333 CD2 PHE 35 3.708 49.969 17.044 1.00 0.00 C ATOM 334 CE2 PHE 35 3.880 50.893 16.029 1.00 0.00 C ATOM 335 N TRP 36 3.057 47.877 20.420 1.00 0.00 N ATOM 336 CA TRP 36 3.896 47.428 21.717 1.00 0.00 C ATOM 337 C TRP 36 3.470 46.002 22.072 1.00 0.00 C ATOM 338 O TRP 36 2.359 45.581 21.746 1.00 0.00 O ATOM 340 CB TRP 36 3.656 48.401 22.874 1.00 0.00 C ATOM 343 CG TRP 36 4.239 49.761 22.643 1.00 0.00 C ATOM 344 CD1 TRP 36 3.573 50.879 22.229 1.00 0.00 C ATOM 346 NE1 TRP 36 4.443 51.939 22.131 1.00 0.00 N ATOM 347 CD2 TRP 36 5.608 50.149 22.814 1.00 0.00 C ATOM 348 CE2 TRP 36 5.698 51.514 22.486 1.00 0.00 C ATOM 349 CH2 TRP 36 8.016 51.534 22.937 1.00 0.00 C ATOM 350 CZ2 TRP 36 6.900 52.218 22.543 1.00 0.00 C ATOM 351 CE3 TRP 36 6.766 49.474 23.213 1.00 0.00 C ATOM 352 CZ3 TRP 36 7.955 50.176 23.269 1.00 0.00 C ATOM 353 N ILE 37 4.355 45.260 22.738 1.00 0.00 N ATOM 354 CA ILE 37 3.941 43.962 23.273 1.00 0.00 C ATOM 355 C ILE 37 2.831 43.893 24.323 1.00 0.00 C ATOM 356 O ILE 37 1.981 43.003 24.278 1.00 0.00 O ATOM 358 CB ILE 37 5.127 43.207 23.900 1.00 0.00 C ATOM 359 CD1 ILE 37 5.937 40.866 24.503 1.00 0.00 C ATOM 360 CG1 ILE 37 4.757 41.742 24.146 1.00 0.00 C ATOM 361 CG2 ILE 37 5.584 43.898 25.176 1.00 0.00 C ATOM 362 N SER 38 2.842 44.832 25.270 1.00 0.00 N ATOM 363 CA SER 38 1.816 44.870 26.294 1.00 0.00 C ATOM 364 C SER 38 0.456 45.172 25.664 1.00 0.00 C ATOM 365 O SER 38 -0.563 44.614 26.073 1.00 0.00 O ATOM 367 CB SER 38 2.161 45.914 27.359 1.00 0.00 C ATOM 369 OG SER 38 3.325 45.544 28.078 1.00 0.00 O ATOM 370 N SER 39 0.441 46.056 24.666 1.00 0.00 N ATOM 371 CA SER 39 -0.771 46.405 24.022 1.00 0.00 C ATOM 372 C SER 39 -1.331 45.193 23.277 1.00 0.00 C ATOM 373 O SER 39 -2.548 45.040 23.156 1.00 0.00 O ATOM 375 CB SER 39 -0.550 47.576 23.063 1.00 0.00 C ATOM 377 OG SER 39 0.297 47.204 21.990 1.00 0.00 O ATOM 378 N PHE 40 -0.444 44.333 22.777 1.00 0.00 N ATOM 379 CA PHE 40 -0.829 43.226 21.901 1.00 0.00 C ATOM 380 C PHE 40 -1.655 42.516 22.975 1.00 0.00 C ATOM 381 O PHE 40 -2.871 42.375 22.839 1.00 0.00 O ATOM 383 CB PHE 40 0.412 42.521 21.351 1.00 0.00 C ATOM 384 CG PHE 40 1.160 41.721 22.380 1.00 0.00 C ATOM 385 CZ PHE 40 2.547 40.246 24.284 1.00 0.00 C ATOM 386 CD1 PHE 40 0.823 40.402 22.631 1.00 0.00 C ATOM 387 CE1 PHE 40 1.510 39.666 23.577 1.00 0.00 C ATOM 388 CD2 PHE 40 2.200 42.286 23.095 1.00 0.00 C ATOM 389 CE2 PHE 40 2.888 41.550 24.041 1.00 0.00 C ATOM 390 N ILE 41 -0.994 42.070 24.043 1.00 0.00 N ATOM 391 CA ILE 41 -1.712 41.342 25.226 1.00 0.00 C ATOM 392 C ILE 41 -2.594 42.331 25.992 1.00 0.00 C ATOM 393 O ILE 41 -3.687 41.979 26.438 1.00 0.00 O ATOM 395 CB ILE 41 -0.701 40.675 26.177 1.00 0.00 C ATOM 396 CD1 ILE 41 -0.465 38.775 27.860 1.00 0.00 C ATOM 397 CG1 ILE 41 -1.409 39.676 27.094 1.00 0.00 C ATOM 398 CG2 ILE 41 0.062 41.727 26.966 1.00 0.00 C ATOM 399 N GLY 42 -2.117 43.566 26.144 1.00 0.00 N ATOM 400 CA GLY 42 -3.031 44.643 26.663 1.00 0.00 C ATOM 401 C GLY 42 -4.306 45.059 25.925 1.00 0.00 C ATOM 402 O GLY 42 -5.410 44.913 26.453 1.00 0.00 O ATOM 404 N ARG 43 -4.152 45.576 24.707 1.00 0.00 N ATOM 405 CA ARG 43 -5.410 45.517 23.786 1.00 0.00 C ATOM 406 C ARG 43 -6.378 44.554 23.095 1.00 0.00 C ATOM 407 O ARG 43 -7.555 44.489 23.449 1.00 0.00 O ATOM 409 CB ARG 43 -5.146 46.248 22.469 1.00 0.00 C ATOM 410 CD ARG 43 -4.755 48.418 21.269 1.00 0.00 C ATOM 412 NE ARG 43 -3.406 48.116 20.793 1.00 0.00 N ATOM 413 CG ARG 43 -5.047 47.759 22.607 1.00 0.00 C ATOM 414 CZ ARG 43 -2.972 48.378 19.565 1.00 0.00 C ATOM 417 NH1 ARG 43 -1.730 48.068 19.220 1.00 0.00 N ATOM 420 NH2 ARG 43 -3.781 48.950 18.683 1.00 0.00 N ATOM 421 N SER 44 -5.879 43.810 22.107 1.00 0.00 N ATOM 422 CA SER 44 -6.595 42.145 22.398 1.00 0.00 C ATOM 423 C SER 44 -6.598 41.147 23.558 1.00 0.00 C ATOM 424 O SER 44 -5.994 41.399 24.601 1.00 0.00 O ATOM 426 CB SER 44 -6.099 41.157 21.341 1.00 0.00 C ATOM 428 OG SER 44 -4.715 40.897 21.495 1.00 0.00 O ATOM 429 N LYS 45 -7.281 40.018 23.374 1.00 0.00 N ATOM 430 CA LYS 45 -6.843 38.844 24.278 1.00 0.00 C ATOM 431 C LYS 45 -5.905 37.643 24.149 1.00 0.00 C ATOM 432 O LYS 45 -5.952 36.720 24.965 1.00 0.00 O ATOM 434 CB LYS 45 -8.058 38.033 24.729 1.00 0.00 C ATOM 435 CD LYS 45 -10.180 37.923 26.067 1.00 0.00 C ATOM 436 CE LYS 45 -11.127 38.683 26.980 1.00 0.00 C ATOM 437 CG LYS 45 -9.019 38.799 25.625 1.00 0.00 C ATOM 441 NZ LYS 45 -12.274 37.839 27.417 1.00 0.00 N TER END