####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS044_4-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS044_4-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 35 8 - 42 4.94 7.23 LONGEST_CONTINUOUS_SEGMENT: 35 9 - 43 4.98 7.30 LCS_AVERAGE: 74.69 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 20 - 37 1.95 8.47 LCS_AVERAGE: 28.15 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 0.95 8.96 LONGEST_CONTINUOUS_SEGMENT: 12 21 - 32 0.95 9.02 LCS_AVERAGE: 17.87 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 12 0 3 3 3 4 6 9 13 17 21 25 27 29 31 33 34 37 37 39 40 LCS_GDT V 3 V 3 5 5 12 3 5 5 5 6 6 11 15 17 19 21 25 27 29 32 34 35 36 39 40 LCS_GDT Q 4 Q 4 5 5 15 3 5 5 5 6 7 11 15 17 19 21 25 27 29 30 34 35 36 39 40 LCS_GDT G 5 G 5 5 5 33 3 5 5 5 6 7 11 15 19 21 25 28 29 31 33 35 37 37 39 40 LCS_GDT P 6 P 6 5 5 33 3 5 5 5 6 7 11 15 17 21 25 28 29 31 33 35 37 37 39 40 LCS_GDT W 7 W 7 5 5 34 3 5 5 5 6 6 8 10 17 19 23 25 27 30 32 34 37 37 39 40 LCS_GDT V 8 V 8 3 10 35 3 3 14 16 17 18 19 22 25 26 26 28 29 31 33 35 37 37 39 40 LCS_GDT G 9 G 9 6 10 35 3 5 6 9 17 18 19 21 24 26 26 28 29 31 33 35 37 37 39 40 LCS_GDT S 10 S 10 8 10 35 3 5 8 9 15 17 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT S 11 S 11 8 10 35 3 5 8 9 10 12 14 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT Y 12 Y 12 8 10 35 3 6 8 9 10 12 14 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT V 13 V 13 8 10 35 3 6 8 9 10 15 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT A 14 A 14 8 10 35 4 6 8 9 10 12 14 17 21 24 26 28 30 32 33 35 37 37 39 40 LCS_GDT E 15 E 15 8 10 35 4 6 8 9 10 12 14 14 15 16 22 26 30 32 33 34 36 37 39 40 LCS_GDT T 16 T 16 8 10 35 4 6 8 9 10 12 14 14 15 20 25 27 30 32 33 35 37 37 39 40 LCS_GDT G 17 G 17 8 10 35 4 6 8 9 10 12 14 14 15 16 18 23 27 30 33 35 37 37 39 40 LCS_GDT Q 18 Q 18 4 10 35 3 3 4 8 10 12 14 14 21 24 26 28 30 32 33 35 37 37 39 40 LCS_GDT N 19 N 19 4 16 35 3 3 4 4 10 16 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT W 20 W 20 12 18 35 7 10 13 16 17 18 19 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT A 21 A 21 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT S 22 S 22 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT L 23 L 23 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT A 24 A 24 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT A 25 A 25 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT N 26 N 26 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT E 27 E 27 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT L 28 L 28 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT R 29 R 29 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT V 30 V 30 12 18 35 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT T 31 T 31 12 18 35 3 8 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT E 32 E 32 12 18 35 3 8 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT R 33 R 33 11 18 35 3 8 12 15 16 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT P 34 P 34 5 18 35 2 4 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT F 35 F 35 3 18 35 3 3 3 5 8 13 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT W 36 W 36 7 18 35 3 10 13 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT I 37 I 37 7 18 35 4 6 9 11 13 16 18 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT S 38 S 38 7 9 35 4 6 7 8 8 9 14 18 22 24 26 28 30 32 33 35 37 37 39 40 LCS_GDT S 39 S 39 7 9 35 4 6 7 8 8 11 14 18 23 24 26 28 30 32 33 35 37 37 39 40 LCS_GDT F 40 F 40 7 9 35 4 6 7 8 10 16 20 22 25 26 26 28 30 32 33 35 37 37 39 40 LCS_GDT I 41 I 41 7 9 35 4 6 7 8 8 11 14 18 23 24 26 28 30 32 33 35 37 37 39 40 LCS_GDT G 42 G 42 7 9 35 0 6 7 8 8 9 12 17 20 24 25 27 30 32 33 34 35 37 38 39 LCS_GDT R 43 R 43 7 9 35 0 6 7 8 8 11 11 13 20 22 25 27 30 32 33 34 35 36 38 39 LCS_GDT S 44 S 44 3 9 33 1 3 3 5 6 9 10 10 11 13 20 22 26 29 29 31 33 33 35 35 LCS_GDT K 45 K 45 3 3 14 0 3 3 4 4 5 5 8 8 11 13 16 16 17 20 21 22 25 26 28 LCS_AVERAGE LCS_A: 40.24 ( 17.87 28.15 74.69 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 14 16 17 18 20 22 25 26 26 28 30 32 33 35 37 37 39 40 GDT PERCENT_AT 15.91 22.73 31.82 36.36 38.64 40.91 45.45 50.00 56.82 59.09 59.09 63.64 68.18 72.73 75.00 79.55 84.09 84.09 88.64 90.91 GDT RMS_LOCAL 0.24 0.59 1.03 1.20 1.34 1.48 2.47 2.53 2.86 2.93 2.93 3.51 4.14 4.45 4.62 4.88 5.18 5.18 5.51 5.72 GDT RMS_ALL_AT 9.13 8.77 8.82 8.72 8.68 8.73 7.47 7.81 7.61 7.69 7.69 7.45 7.21 7.35 7.42 7.18 7.25 7.25 7.32 7.25 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: E 15 E 15 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 8.877 0 0.035 0.051 10.393 0.000 0.000 - LGA V 3 V 3 10.951 0 0.586 0.636 12.565 0.000 0.000 12.565 LGA Q 4 Q 4 11.826 0 0.039 0.928 18.690 0.000 0.000 18.537 LGA G 5 G 5 8.921 0 0.139 0.139 10.709 0.000 0.000 - LGA P 6 P 6 8.122 0 0.690 0.610 9.931 0.000 0.000 9.304 LGA W 7 W 7 9.226 0 0.519 1.207 20.052 0.000 0.000 19.689 LGA V 8 V 8 3.044 0 0.601 1.443 5.123 21.364 12.987 5.080 LGA G 9 G 9 4.250 0 0.439 0.439 4.250 17.273 17.273 - LGA S 10 S 10 3.188 0 0.039 0.140 4.348 17.273 17.879 2.758 LGA S 11 S 11 4.260 0 0.117 0.598 5.940 8.636 6.970 4.179 LGA Y 12 Y 12 4.799 0 0.054 1.272 11.706 2.273 1.212 11.706 LGA V 13 V 13 5.330 0 0.162 1.218 9.574 1.364 0.779 6.445 LGA A 14 A 14 10.288 0 0.087 0.092 13.984 0.000 0.000 - LGA E 15 E 15 13.079 0 0.046 1.149 16.001 0.000 0.000 16.001 LGA T 16 T 16 10.983 0 0.042 0.166 11.810 0.000 0.000 6.616 LGA G 17 G 17 11.928 0 0.598 0.598 11.928 0.000 0.000 - LGA Q 18 Q 18 9.099 0 0.663 1.198 14.348 0.000 0.000 13.568 LGA N 19 N 19 3.878 0 0.041 0.988 7.141 16.818 10.682 7.141 LGA W 20 W 20 3.349 0 0.584 1.306 14.434 30.455 8.701 14.434 LGA A 21 A 21 1.491 0 0.035 0.042 2.090 66.818 66.545 - LGA S 22 S 22 1.475 0 0.027 0.632 2.204 61.818 58.485 1.016 LGA L 23 L 23 1.740 0 0.059 0.142 4.156 62.273 38.864 4.156 LGA A 24 A 24 1.541 0 0.028 0.031 1.977 58.182 56.727 - LGA A 25 A 25 1.465 0 0.031 0.032 1.974 58.182 59.636 - LGA N 26 N 26 1.373 0 0.054 0.103 1.852 65.455 60.000 1.852 LGA E 27 E 27 1.223 0 0.066 0.867 3.415 58.182 52.323 3.415 LGA L 28 L 28 1.812 0 0.040 0.056 2.301 44.545 47.727 1.821 LGA R 29 R 29 2.033 0 0.088 1.407 9.751 41.364 21.983 9.751 LGA V 30 V 30 2.089 0 0.103 1.145 3.250 59.091 45.714 3.250 LGA T 31 T 31 0.710 0 0.655 0.972 4.129 60.000 48.312 2.637 LGA E 32 E 32 1.061 0 0.101 1.448 4.157 74.091 47.677 3.735 LGA R 33 R 33 2.730 0 0.017 0.760 14.620 20.455 7.438 14.620 LGA P 34 P 34 1.951 0 0.613 0.619 4.792 29.545 26.234 3.534 LGA F 35 F 35 3.763 0 0.603 1.408 10.207 34.545 12.562 10.207 LGA W 36 W 36 1.267 0 0.616 1.144 6.179 58.182 34.675 5.053 LGA I 37 I 37 4.216 0 0.102 0.948 8.593 5.000 2.500 8.593 LGA S 38 S 38 7.967 0 0.121 0.650 10.662 0.000 0.000 10.662 LGA S 39 S 39 7.367 0 0.160 0.706 8.734 0.000 0.000 7.790 LGA F 40 F 40 4.665 0 0.131 1.304 8.394 0.455 3.306 8.102 LGA I 41 I 41 8.613 0 0.600 0.572 12.186 0.000 0.000 11.491 LGA G 42 G 42 11.910 0 0.568 0.568 14.318 0.000 0.000 - LGA R 43 R 43 12.304 0 0.609 1.270 14.124 0.000 0.000 12.595 LGA S 44 S 44 18.016 0 0.623 0.844 21.583 0.000 0.000 18.203 LGA K 45 K 45 21.245 0 0.030 0.878 23.264 0.000 0.000 20.366 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 7.016 7.119 8.435 22.128 17.436 8.312 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 22 2.53 47.159 43.212 0.835 LGA_LOCAL RMSD: 2.535 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.807 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 7.016 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.859416 * X + -0.356378 * Y + -0.366604 * Z + -0.136083 Y_new = 0.020920 * X + -0.691925 * Y + 0.721666 * Z + 44.789234 Z_new = -0.510848 * X + -0.627881 * Y + -0.587196 * Z + -12.450149 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.024337 0.536171 -2.322724 [DEG: 1.3944 30.7203 -133.0823 ] ZXZ: -2.671568 2.198387 -2.458610 [DEG: -153.0696 125.9583 -140.8680 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS044_4-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS044_4-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 22 2.53 43.212 7.02 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS044_4-D1 PFRMAT TS TARGET T0953s2 MODEL 4 PARENT N/A ATOM 20 N ALA 2 4.659 40.508 15.083 1.00 4.57 N ATOM 21 CA ALA 2 3.715 41.484 15.632 1.00 4.57 C ATOM 22 C ALA 2 4.462 42.670 16.260 1.00 4.57 C ATOM 23 O ALA 2 5.560 42.479 16.789 1.00 4.57 O ATOM 24 CB ALA 2 2.817 40.822 16.649 1.00 4.57 C ATOM 30 N VAL 3 3.883 43.891 16.223 1.00 4.93 N ATOM 31 CA VAL 3 2.544 44.187 15.688 1.00 4.93 C ATOM 32 C VAL 3 2.482 44.519 14.203 1.00 4.93 C ATOM 33 O VAL 3 1.709 43.899 13.475 1.00 4.93 O ATOM 34 CB VAL 3 1.909 45.333 16.474 1.00 4.93 C ATOM 35 CG1 VAL 3 0.571 45.693 15.847 1.00 4.93 C ATOM 36 CG2 VAL 3 1.741 44.901 17.927 1.00 4.93 C ATOM 46 N GLN 4 3.268 45.480 13.727 1.00 4.66 N ATOM 47 CA GLN 4 3.153 45.802 12.309 1.00 4.66 C ATOM 48 C GLN 4 4.017 44.866 11.500 1.00 4.66 C ATOM 49 O GLN 4 5.134 44.543 11.892 1.00 4.66 O ATOM 50 CB GLN 4 3.514 47.257 12.016 1.00 4.66 C ATOM 51 CG GLN 4 2.589 48.264 12.666 1.00 4.66 C ATOM 52 CD GLN 4 1.141 48.129 12.171 1.00 4.66 C ATOM 53 OE1 GLN 4 0.864 48.124 10.964 1.00 4.66 O ATOM 54 NE2 GLN 4 0.223 48.033 13.122 1.00 4.66 N ATOM 63 N GLY 5 3.483 44.441 10.377 1.00 3.94 N ATOM 64 CA GLY 5 4.146 43.500 9.506 1.00 3.94 C ATOM 65 C GLY 5 4.636 44.101 8.203 1.00 3.94 C ATOM 66 O GLY 5 4.864 45.307 8.118 1.00 3.94 O ATOM 70 N PRO 6 4.761 43.260 7.165 1.00 2.92 N ATOM 71 CA PRO 6 4.427 41.832 7.053 1.00 2.92 C ATOM 72 C PRO 6 5.132 40.983 8.091 1.00 2.92 C ATOM 73 O PRO 6 6.185 41.368 8.590 1.00 2.92 O ATOM 74 CB PRO 6 4.884 41.500 5.639 1.00 2.92 C ATOM 75 CG PRO 6 4.831 42.829 4.901 1.00 2.92 C ATOM 76 CD PRO 6 5.252 43.851 5.930 1.00 2.92 C ATOM 84 N TRP 7 4.503 39.873 8.486 1.00 3.13 N ATOM 85 CA TRP 7 5.055 39.063 9.555 1.00 3.13 C ATOM 86 C TRP 7 5.918 37.928 9.001 1.00 3.13 C ATOM 87 O TRP 7 7.096 37.822 9.355 1.00 3.13 O ATOM 88 CB TRP 7 3.911 38.473 10.423 1.00 3.13 C ATOM 89 CG TRP 7 3.075 39.496 11.274 1.00 3.13 C ATOM 90 CD1 TRP 7 3.394 40.782 11.544 1.00 3.13 C ATOM 91 CD2 TRP 7 1.775 39.280 11.955 1.00 3.13 C ATOM 92 NE1 TRP 7 2.404 41.372 12.308 1.00 3.13 N ATOM 93 CE2 TRP 7 1.431 40.477 12.564 1.00 3.13 C ATOM 94 CE3 TRP 7 0.902 38.191 12.087 1.00 3.13 C ATOM 95 CZ2 TRP 7 0.254 40.629 13.286 1.00 3.13 C ATOM 96 CZ3 TRP 7 -0.275 38.342 12.807 1.00 3.13 C ATOM 97 CH2 TRP 7 -0.589 39.525 13.387 1.00 3.13 C ATOM 108 N VAL 8 5.348 37.100 8.121 1.00 2.99 N ATOM 109 CA VAL 8 6.090 35.939 7.599 1.00 2.99 C ATOM 110 C VAL 8 6.054 35.777 6.092 1.00 2.99 C ATOM 111 O VAL 8 5.401 36.542 5.375 1.00 2.99 O ATOM 112 CB VAL 8 5.614 34.625 8.205 1.00 2.99 C ATOM 113 CG1 VAL 8 5.805 34.659 9.691 1.00 2.99 C ATOM 114 CG2 VAL 8 4.187 34.374 7.785 1.00 2.99 C ATOM 124 N GLY 9 6.827 34.796 5.615 1.00 3.28 N ATOM 125 CA GLY 9 6.815 34.411 4.216 1.00 3.28 C ATOM 126 C GLY 9 6.160 33.037 3.991 1.00 3.28 C ATOM 127 O GLY 9 5.515 32.456 4.891 1.00 3.28 O ATOM 131 N SER 10 6.431 32.497 2.801 1.00 3.32 N ATOM 132 CA SER 10 5.872 31.249 2.284 1.00 3.32 C ATOM 133 C SER 10 6.183 30.003 3.102 1.00 3.32 C ATOM 134 O SER 10 5.428 29.031 3.049 1.00 3.32 O ATOM 135 CB SER 10 6.369 31.043 0.866 1.00 3.32 C ATOM 136 OG SER 10 7.757 30.846 0.847 1.00 3.32 O ATOM 142 N SER 11 7.213 30.061 3.948 1.00 3.42 N ATOM 143 CA SER 11 7.598 28.908 4.758 1.00 3.42 C ATOM 144 C SER 11 6.470 28.437 5.681 1.00 3.42 C ATOM 145 O SER 11 6.469 27.282 6.108 1.00 3.42 O ATOM 146 CB SER 11 8.821 29.245 5.592 1.00 3.42 C ATOM 147 OG SER 11 8.521 30.225 6.538 1.00 3.42 O ATOM 153 N TYR 12 5.502 29.312 5.974 1.00 3.56 N ATOM 154 CA TYR 12 4.372 28.897 6.793 1.00 3.56 C ATOM 155 C TYR 12 3.071 29.044 6.013 1.00 3.56 C ATOM 156 O TYR 12 2.159 28.193 6.059 1.00 3.56 O ATOM 157 CB TYR 12 4.256 29.762 8.048 1.00 3.56 C ATOM 158 CG TYR 12 5.439 29.750 8.941 1.00 3.56 C ATOM 159 CD1 TYR 12 6.230 30.864 8.991 1.00 3.56 C ATOM 160 CD2 TYR 12 5.732 28.649 9.719 1.00 3.56 C ATOM 161 CE1 TYR 12 7.331 30.902 9.813 1.00 3.56 C ATOM 162 CE2 TYR 12 6.832 28.672 10.552 1.00 3.56 C ATOM 163 CZ TYR 12 7.635 29.795 10.601 1.00 3.56 C ATOM 164 OH TYR 12 8.733 29.823 11.429 1.00 3.56 O ATOM 174 N VAL 13 2.979 30.107 5.238 1.00 3.66 N ATOM 175 CA VAL 13 1.670 30.398 4.719 1.00 3.66 C ATOM 176 C VAL 13 1.363 29.722 3.412 1.00 3.66 C ATOM 177 O VAL 13 0.200 29.635 3.029 1.00 3.66 O ATOM 178 CB VAL 13 1.509 31.886 4.641 1.00 3.66 C ATOM 179 CG1 VAL 13 1.787 32.390 6.049 1.00 3.66 C ATOM 180 CG2 VAL 13 2.411 32.465 3.600 1.00 3.66 C ATOM 190 N ALA 14 2.375 29.135 2.769 1.00 4.06 N ATOM 191 CA ALA 14 2.139 28.377 1.558 1.00 4.06 C ATOM 192 C ALA 14 1.195 27.209 1.841 1.00 4.06 C ATOM 193 O ALA 14 0.520 26.722 0.934 1.00 4.06 O ATOM 194 CB ALA 14 3.442 27.856 0.991 1.00 4.06 C ATOM 200 N GLU 15 1.194 26.714 3.089 1.00 3.97 N ATOM 201 CA GLU 15 0.370 25.577 3.454 1.00 3.97 C ATOM 202 C GLU 15 -0.888 25.990 4.224 1.00 3.97 C ATOM 203 O GLU 15 -1.913 25.311 4.141 1.00 3.97 O ATOM 204 CB GLU 15 1.189 24.588 4.292 1.00 3.97 C ATOM 205 CG GLU 15 2.390 23.982 3.557 1.00 3.97 C ATOM 206 CD GLU 15 3.185 22.998 4.399 1.00 3.97 C ATOM 207 OE1 GLU 15 2.885 22.849 5.560 1.00 3.97 O ATOM 208 OE2 GLU 15 4.097 22.401 3.872 1.00 3.97 O ATOM 215 N THR 16 -0.811 27.095 4.979 1.00 3.38 N ATOM 216 CA THR 16 -1.935 27.484 5.832 1.00 3.38 C ATOM 217 C THR 16 -2.722 28.784 5.490 1.00 3.38 C ATOM 218 O THR 16 -3.862 28.933 5.951 1.00 3.38 O ATOM 219 CB THR 16 -1.430 27.501 7.286 1.00 3.38 C ATOM 220 OG1 THR 16 -0.328 28.388 7.401 1.00 3.38 O ATOM 221 CG2 THR 16 -0.998 26.120 7.714 1.00 3.38 C ATOM 229 N GLY 17 -2.160 29.726 4.729 1.00 3.04 N ATOM 230 CA GLY 17 -2.904 30.947 4.392 1.00 3.04 C ATOM 231 C GLY 17 -3.459 31.713 5.599 1.00 3.04 C ATOM 232 O GLY 17 -2.755 32.034 6.566 1.00 3.04 O ATOM 236 N GLN 18 -4.775 31.946 5.545 1.00 2.88 N ATOM 237 CA GLN 18 -5.526 32.666 6.576 1.00 2.88 C ATOM 238 C GLN 18 -5.464 31.973 7.923 1.00 2.88 C ATOM 239 O GLN 18 -5.610 32.619 8.969 1.00 2.88 O ATOM 240 CB GLN 18 -6.994 32.823 6.177 1.00 2.88 C ATOM 241 CG GLN 18 -7.266 33.767 5.003 1.00 2.88 C ATOM 242 CD GLN 18 -6.920 35.230 5.300 1.00 2.88 C ATOM 243 OE1 GLN 18 -6.147 35.846 4.564 1.00 2.88 O ATOM 244 NE2 GLN 18 -7.490 35.777 6.377 1.00 2.88 N ATOM 253 N ASN 19 -5.279 30.655 7.919 1.00 2.41 N ATOM 254 CA ASN 19 -5.234 29.949 9.183 1.00 2.41 C ATOM 255 C ASN 19 -3.987 30.374 9.930 1.00 2.41 C ATOM 256 O ASN 19 -3.976 30.418 11.160 1.00 2.41 O ATOM 257 CB ASN 19 -5.258 28.454 8.973 1.00 2.41 C ATOM 258 CG ASN 19 -6.600 27.956 8.535 1.00 2.41 C ATOM 259 OD1 ASN 19 -7.642 28.575 8.794 1.00 2.41 O ATOM 260 ND2 ASN 19 -6.598 26.836 7.858 1.00 2.41 N ATOM 267 N TRP 20 -2.924 30.701 9.187 1.00 2.16 N ATOM 268 CA TRP 20 -1.710 31.128 9.835 1.00 2.16 C ATOM 269 C TRP 20 -1.969 32.436 10.517 1.00 2.16 C ATOM 270 O TRP 20 -1.621 32.615 11.675 1.00 2.16 O ATOM 271 CB TRP 20 -0.548 31.317 8.879 1.00 2.16 C ATOM 272 CG TRP 20 0.643 31.688 9.620 1.00 2.16 C ATOM 273 CD1 TRP 20 1.499 30.838 10.240 1.00 2.16 C ATOM 274 CD2 TRP 20 1.130 32.998 9.867 1.00 2.16 C ATOM 275 NE1 TRP 20 2.467 31.537 10.882 1.00 2.16 N ATOM 276 CE2 TRP 20 2.257 32.858 10.675 1.00 2.16 C ATOM 277 CE3 TRP 20 0.706 34.266 9.488 1.00 2.16 C ATOM 278 CZ2 TRP 20 2.939 33.923 11.131 1.00 2.16 C ATOM 279 CZ3 TRP 20 1.407 35.336 9.935 1.00 2.16 C ATOM 280 CH2 TRP 20 2.497 35.161 10.752 1.00 2.16 C ATOM 291 N ALA 21 -2.597 33.361 9.789 1.00 2.17 N ATOM 292 CA ALA 21 -2.862 34.685 10.352 1.00 2.17 C ATOM 293 C ALA 21 -3.717 34.618 11.600 1.00 2.17 C ATOM 294 O ALA 21 -3.476 35.346 12.568 1.00 2.17 O ATOM 295 CB ALA 21 -3.570 35.552 9.355 1.00 2.17 C ATOM 301 N SER 22 -4.716 33.736 11.596 1.00 2.60 N ATOM 302 CA SER 22 -5.578 33.637 12.759 1.00 2.60 C ATOM 303 C SER 22 -4.802 33.101 13.957 1.00 2.60 C ATOM 304 O SER 22 -4.900 33.628 15.075 1.00 2.60 O ATOM 305 CB SER 22 -6.749 32.727 12.447 1.00 2.60 C ATOM 306 OG SER 22 -7.571 33.284 11.451 1.00 2.60 O ATOM 312 N LEU 23 -4.004 32.057 13.725 1.00 2.53 N ATOM 313 CA LEU 23 -3.249 31.471 14.813 1.00 2.53 C ATOM 314 C LEU 23 -2.171 32.415 15.293 1.00 2.53 C ATOM 315 O LEU 23 -1.998 32.599 16.495 1.00 2.53 O ATOM 316 CB LEU 23 -2.616 30.163 14.343 1.00 2.53 C ATOM 317 CG LEU 23 -3.600 29.026 14.065 1.00 2.53 C ATOM 318 CD1 LEU 23 -2.863 27.877 13.403 1.00 2.53 C ATOM 319 CD2 LEU 23 -4.240 28.592 15.372 1.00 2.53 C ATOM 331 N ALA 24 -1.488 33.057 14.350 1.00 2.45 N ATOM 332 CA ALA 24 -0.412 33.973 14.656 1.00 2.45 C ATOM 333 C ALA 24 -0.906 35.157 15.439 1.00 2.45 C ATOM 334 O ALA 24 -0.275 35.566 16.407 1.00 2.45 O ATOM 335 CB ALA 24 0.235 34.445 13.377 1.00 2.45 C ATOM 341 N ALA 25 -2.058 35.710 15.090 1.00 2.48 N ATOM 342 CA ALA 25 -2.530 36.845 15.851 1.00 2.48 C ATOM 343 C ALA 25 -2.717 36.459 17.318 1.00 2.48 C ATOM 344 O ALA 25 -2.375 37.203 18.237 1.00 2.48 O ATOM 345 CB ALA 25 -3.799 37.401 15.271 1.00 2.48 C ATOM 351 N ASN 26 -3.214 35.237 17.548 1.00 2.76 N ATOM 352 CA ASN 26 -3.398 34.806 18.924 1.00 2.76 C ATOM 353 C ASN 26 -2.055 34.501 19.606 1.00 2.76 C ATOM 354 O ASN 26 -1.786 34.992 20.705 1.00 2.76 O ATOM 355 CB ASN 26 -4.315 33.602 18.949 1.00 2.76 C ATOM 356 CG ASN 26 -5.748 33.972 18.655 1.00 2.76 C ATOM 357 OD1 ASN 26 -6.168 35.126 18.823 1.00 2.76 O ATOM 358 ND2 ASN 26 -6.510 33.010 18.207 1.00 2.76 N ATOM 365 N GLU 27 -1.178 33.760 18.925 1.00 2.88 N ATOM 366 CA GLU 27 0.121 33.361 19.484 1.00 2.88 C ATOM 367 C GLU 27 1.015 34.554 19.787 1.00 2.88 C ATOM 368 O GLU 27 1.719 34.588 20.806 1.00 2.88 O ATOM 369 CB GLU 27 0.866 32.434 18.515 1.00 2.88 C ATOM 370 CG GLU 27 0.275 31.032 18.366 1.00 2.88 C ATOM 371 CD GLU 27 0.998 30.190 17.326 1.00 2.88 C ATOM 372 OE1 GLU 27 1.857 30.711 16.649 1.00 2.88 O ATOM 373 OE2 GLU 27 0.690 29.026 17.219 1.00 2.88 O ATOM 380 N LEU 28 0.954 35.559 18.924 1.00 2.73 N ATOM 381 CA LEU 28 1.763 36.754 19.032 1.00 2.73 C ATOM 382 C LEU 28 1.126 37.786 19.962 1.00 2.73 C ATOM 383 O LEU 28 1.694 38.858 20.186 1.00 2.73 O ATOM 384 CB LEU 28 1.943 37.351 17.636 1.00 2.73 C ATOM 385 CG LEU 28 2.675 36.463 16.620 1.00 2.73 C ATOM 386 CD1 LEU 28 2.649 37.128 15.232 1.00 2.73 C ATOM 387 CD2 LEU 28 4.067 36.228 17.092 1.00 2.73 C ATOM 399 N ARG 29 -0.059 37.465 20.501 1.00 3.00 N ATOM 400 CA ARG 29 -0.811 38.332 21.396 1.00 3.00 C ATOM 401 C ARG 29 -1.059 39.721 20.814 1.00 3.00 C ATOM 402 O ARG 29 -0.827 40.731 21.487 1.00 3.00 O ATOM 403 CB ARG 29 -0.089 38.454 22.735 1.00 3.00 C ATOM 404 CG ARG 29 -0.354 37.312 23.730 1.00 3.00 C ATOM 405 CD ARG 29 0.328 36.015 23.345 1.00 3.00 C ATOM 406 NE ARG 29 0.158 34.999 24.390 1.00 3.00 N ATOM 407 CZ ARG 29 0.573 33.705 24.333 1.00 3.00 C ATOM 408 NH1 ARG 29 1.199 33.222 23.277 1.00 3.00 N ATOM 409 NH2 ARG 29 0.345 32.908 25.367 1.00 3.00 N ATOM 423 N VAL 30 -1.524 39.778 19.564 1.00 2.81 N ATOM 424 CA VAL 30 -1.746 41.054 18.895 1.00 2.81 C ATOM 425 C VAL 30 -3.148 41.342 18.391 1.00 2.81 C ATOM 426 O VAL 30 -3.788 40.516 17.734 1.00 2.81 O ATOM 427 CB VAL 30 -0.757 41.154 17.734 1.00 2.81 C ATOM 428 CG1 VAL 30 -0.882 39.960 16.886 1.00 2.81 C ATOM 429 CG2 VAL 30 -1.049 42.376 16.869 1.00 2.81 C ATOM 439 N THR 31 -3.592 42.564 18.669 1.00 3.25 N ATOM 440 CA THR 31 -4.866 43.059 18.191 1.00 3.25 C ATOM 441 C THR 31 -4.609 44.176 17.193 1.00 3.25 C ATOM 442 O THR 31 -3.901 45.140 17.494 1.00 3.25 O ATOM 443 CB THR 31 -5.758 43.566 19.339 1.00 3.25 C ATOM 444 OG1 THR 31 -6.020 42.493 20.253 1.00 3.25 O ATOM 445 CG2 THR 31 -7.071 44.102 18.793 1.00 3.25 C ATOM 453 N GLU 32 -5.174 44.013 16.014 1.00 3.31 N ATOM 454 CA GLU 32 -5.066 44.921 14.877 1.00 3.31 C ATOM 455 C GLU 32 -6.245 44.637 13.957 1.00 3.31 C ATOM 456 O GLU 32 -6.879 43.589 14.059 1.00 3.31 O ATOM 457 CB GLU 32 -3.690 44.775 14.175 1.00 3.31 C ATOM 458 CG GLU 32 -3.436 45.694 12.912 1.00 3.31 C ATOM 459 CD GLU 32 -3.596 47.210 13.136 1.00 3.31 C ATOM 460 OE1 GLU 32 -4.726 47.652 13.176 1.00 3.31 O ATOM 461 OE2 GLU 32 -2.614 47.920 13.198 1.00 3.31 O ATOM 468 N ARG 33 -6.565 45.566 13.078 1.00 2.97 N ATOM 469 CA ARG 33 -7.653 45.336 12.148 1.00 2.97 C ATOM 470 C ARG 33 -7.346 44.068 11.315 1.00 2.97 C ATOM 471 O ARG 33 -6.237 43.956 10.772 1.00 2.97 O ATOM 472 CB ARG 33 -7.814 46.539 11.236 1.00 2.97 C ATOM 473 CG ARG 33 -8.272 47.817 11.926 1.00 2.97 C ATOM 474 CD ARG 33 -8.368 48.969 10.967 1.00 2.97 C ATOM 475 NE ARG 33 -8.830 50.196 11.619 1.00 2.97 N ATOM 476 CZ ARG 33 -8.032 51.063 12.282 1.00 2.97 C ATOM 477 NH1 ARG 33 -6.739 50.839 12.372 1.00 2.97 N ATOM 478 NH2 ARG 33 -8.553 52.141 12.844 1.00 2.97 N ATOM 492 N PRO 34 -8.320 43.138 11.143 1.00 2.90 N ATOM 493 CA PRO 34 -8.237 41.892 10.380 1.00 2.90 C ATOM 494 C PRO 34 -7.629 42.030 8.995 1.00 2.90 C ATOM 495 O PRO 34 -6.953 41.120 8.516 1.00 2.90 O ATOM 496 CB PRO 34 -9.700 41.459 10.305 1.00 2.90 C ATOM 497 CG PRO 34 -10.311 42.002 11.567 1.00 2.90 C ATOM 498 CD PRO 34 -9.643 43.329 11.792 1.00 2.90 C ATOM 506 N PHE 35 -7.871 43.168 8.327 1.00 2.46 N ATOM 507 CA PHE 35 -7.272 43.370 7.014 1.00 2.46 C ATOM 508 C PHE 35 -5.758 43.287 7.095 1.00 2.46 C ATOM 509 O PHE 35 -5.111 42.688 6.228 1.00 2.46 O ATOM 510 CB PHE 35 -7.653 44.675 6.328 1.00 2.46 C ATOM 511 CG PHE 35 -6.826 44.794 5.072 1.00 2.46 C ATOM 512 CD1 PHE 35 -7.155 44.142 3.906 1.00 2.46 C ATOM 513 CD2 PHE 35 -5.667 45.497 5.110 1.00 2.46 C ATOM 514 CE1 PHE 35 -6.304 44.215 2.825 1.00 2.46 C ATOM 515 CE2 PHE 35 -4.827 45.584 4.072 1.00 2.46 C ATOM 516 CZ PHE 35 -5.132 44.939 2.920 1.00 2.46 C ATOM 526 N TRP 36 -5.171 43.981 8.072 1.00 2.46 N ATOM 527 CA TRP 36 -3.724 44.040 8.144 1.00 2.46 C ATOM 528 C TRP 36 -3.204 42.743 8.709 1.00 2.46 C ATOM 529 O TRP 36 -2.181 42.234 8.256 1.00 2.46 O ATOM 530 CB TRP 36 -3.273 45.267 8.938 1.00 2.46 C ATOM 531 CG TRP 36 -3.302 46.517 8.093 1.00 2.46 C ATOM 532 CD1 TRP 36 -2.249 47.032 7.400 1.00 2.46 C ATOM 533 CD2 TRP 36 -4.429 47.380 7.798 1.00 2.46 C ATOM 534 NE1 TRP 36 -2.636 48.140 6.703 1.00 2.46 N ATOM 535 CE2 TRP 36 -3.969 48.361 6.921 1.00 2.46 C ATOM 536 CE3 TRP 36 -5.768 47.381 8.176 1.00 2.46 C ATOM 537 CZ2 TRP 36 -4.806 49.329 6.406 1.00 2.46 C ATOM 538 CZ3 TRP 36 -6.616 48.360 7.655 1.00 2.46 C ATOM 539 CH2 TRP 36 -6.145 49.303 6.793 1.00 2.46 C ATOM 550 N ILE 37 -3.950 42.125 9.611 1.00 2.40 N ATOM 551 CA ILE 37 -3.505 40.836 10.119 1.00 2.40 C ATOM 552 C ILE 37 -3.422 39.826 8.970 1.00 2.40 C ATOM 553 O ILE 37 -2.458 39.072 8.847 1.00 2.40 O ATOM 554 CB ILE 37 -4.378 40.345 11.276 1.00 2.40 C ATOM 555 CG1 ILE 37 -4.157 41.245 12.486 1.00 2.40 C ATOM 556 CG2 ILE 37 -4.122 38.911 11.572 1.00 2.40 C ATOM 557 CD1 ILE 37 -5.129 41.031 13.610 1.00 2.40 C ATOM 569 N SER 38 -4.448 39.826 8.111 1.00 2.62 N ATOM 570 CA SER 38 -4.471 38.964 6.938 1.00 2.62 C ATOM 571 C SER 38 -3.374 39.365 5.939 1.00 2.62 C ATOM 572 O SER 38 -2.679 38.525 5.384 1.00 2.62 O ATOM 573 CB SER 38 -5.819 39.071 6.264 1.00 2.62 C ATOM 574 OG SER 38 -6.837 38.592 7.102 1.00 2.62 O ATOM 580 N SER 39 -3.155 40.652 5.735 1.00 2.56 N ATOM 581 CA SER 39 -2.128 41.076 4.792 1.00 2.56 C ATOM 582 C SER 39 -0.749 40.571 5.201 1.00 2.56 C ATOM 583 O SER 39 0.045 40.127 4.361 1.00 2.56 O ATOM 584 CB SER 39 -2.105 42.573 4.716 1.00 2.56 C ATOM 585 OG SER 39 -3.288 43.032 4.174 1.00 2.56 O ATOM 591 N PHE 40 -0.505 40.569 6.512 1.00 2.84 N ATOM 592 CA PHE 40 0.771 40.198 7.090 1.00 2.84 C ATOM 593 C PHE 40 1.123 38.701 6.950 1.00 2.84 C ATOM 594 O PHE 40 2.232 38.284 7.323 1.00 2.84 O ATOM 595 CB PHE 40 0.800 40.628 8.554 1.00 2.84 C ATOM 596 CG PHE 40 0.733 42.157 8.750 1.00 2.84 C ATOM 597 CD1 PHE 40 1.054 43.054 7.727 1.00 2.84 C ATOM 598 CD2 PHE 40 0.331 42.691 9.967 1.00 2.84 C ATOM 599 CE1 PHE 40 0.974 44.421 7.930 1.00 2.84 C ATOM 600 CE2 PHE 40 0.249 44.049 10.172 1.00 2.84 C ATOM 601 CZ PHE 40 0.571 44.921 9.152 1.00 2.84 C ATOM 611 N ILE 41 0.199 37.927 6.339 1.00 2.89 N ATOM 612 CA ILE 41 0.390 36.521 6.002 1.00 2.89 C ATOM 613 C ILE 41 1.574 36.363 5.086 1.00 2.89 C ATOM 614 O ILE 41 2.330 35.411 5.214 1.00 2.89 O ATOM 615 CB ILE 41 -0.846 35.946 5.271 1.00 2.89 C ATOM 616 CG1 ILE 41 -1.936 35.817 6.179 1.00 2.89 C ATOM 617 CG2 ILE 41 -0.588 34.651 4.688 1.00 2.89 C ATOM 618 CD1 ILE 41 -3.253 35.526 5.516 1.00 2.89 C ATOM 630 N GLY 42 1.741 37.243 4.123 1.00 3.09 N ATOM 631 CA GLY 42 2.889 37.013 3.283 1.00 3.09 C ATOM 632 C GLY 42 3.549 38.274 2.815 1.00 3.09 C ATOM 633 O GLY 42 2.976 39.090 2.096 1.00 3.09 O ATOM 637 N ARG 43 4.831 38.357 3.132 1.00 3.45 N ATOM 638 CA ARG 43 5.667 39.477 2.742 1.00 3.45 C ATOM 639 C ARG 43 5.684 39.621 1.231 1.00 3.45 C ATOM 640 O ARG 43 5.719 40.725 0.710 1.00 3.45 O ATOM 641 CB ARG 43 7.067 39.320 3.320 1.00 3.45 C ATOM 642 CG ARG 43 7.959 40.534 3.154 1.00 3.45 C ATOM 643 CD ARG 43 9.265 40.385 3.843 1.00 3.45 C ATOM 644 NE ARG 43 9.108 40.233 5.295 1.00 3.45 N ATOM 645 CZ ARG 43 8.924 41.250 6.170 1.00 3.45 C ATOM 646 NH1 ARG 43 8.857 42.489 5.739 1.00 3.45 N ATOM 647 NH2 ARG 43 8.814 40.997 7.462 1.00 3.45 N ATOM 661 N SER 44 5.630 38.491 0.540 1.00 4.09 N ATOM 662 CA SER 44 5.666 38.430 -0.915 1.00 4.09 C ATOM 663 C SER 44 4.275 38.464 -1.569 1.00 4.09 C ATOM 664 O SER 44 4.149 38.150 -2.757 1.00 4.09 O ATOM 665 CB SER 44 6.410 37.186 -1.361 1.00 4.09 C ATOM 666 OG SER 44 5.741 36.021 -0.960 1.00 4.09 O ATOM 672 N LYS 45 3.222 38.789 -0.805 1.00 3.52 N ATOM 673 CA LYS 45 1.870 38.892 -1.364 1.00 3.52 C ATOM 674 C LYS 45 1.481 40.363 -1.605 1.00 3.52 C ATOM 675 O LYS 45 2.010 41.273 -0.968 1.00 3.52 O ATOM 676 CB LYS 45 0.868 38.200 -0.438 1.00 3.52 C ATOM 677 CG LYS 45 1.105 36.689 -0.302 1.00 3.52 C ATOM 678 CD LYS 45 0.078 36.018 0.615 1.00 3.52 C ATOM 679 CE LYS 45 0.385 34.527 0.799 1.00 3.52 C ATOM 680 NZ LYS 45 0.288 33.767 -0.495 1.00 3.52 N TER END