####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS041_4-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS041_4-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 10 - 33 4.96 18.43 LCS_AVERAGE: 47.26 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 19 - 29 1.78 21.19 LCS_AVERAGE: 18.90 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.56 21.51 LCS_AVERAGE: 14.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 4 6 19 3 4 5 6 6 6 6 7 10 10 11 15 16 20 23 23 24 24 25 25 LCS_GDT V 3 V 3 4 6 20 3 4 5 6 6 6 6 8 12 13 14 16 17 20 23 23 24 24 25 25 LCS_GDT Q 4 Q 4 4 6 22 3 4 5 6 6 8 9 11 12 14 15 17 19 21 23 27 28 28 29 29 LCS_GDT G 5 G 5 4 6 22 2 4 5 6 6 8 9 11 12 14 15 17 19 21 24 27 28 28 29 29 LCS_GDT P 6 P 6 4 6 22 3 3 5 6 6 8 9 11 14 14 15 17 21 22 25 27 28 28 29 29 LCS_GDT W 7 W 7 3 6 22 3 3 5 6 6 6 7 11 12 13 14 17 19 22 25 27 28 28 29 29 LCS_GDT V 8 V 8 3 5 22 3 3 3 4 6 6 9 11 12 13 14 17 19 21 25 27 28 28 29 29 LCS_GDT G 9 G 9 3 5 22 3 3 3 3 6 6 8 11 12 13 14 16 18 21 23 27 28 28 29 29 LCS_GDT S 10 S 10 4 5 24 3 4 4 5 6 9 10 11 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT S 11 S 11 4 5 24 3 4 4 5 6 9 11 12 13 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT Y 12 Y 12 4 5 24 3 4 4 5 6 7 7 7 13 13 15 18 21 22 25 27 28 28 29 29 LCS_GDT V 13 V 13 4 5 24 3 4 4 5 6 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT A 14 A 14 4 8 24 4 4 5 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT E 15 E 15 4 8 24 4 4 5 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT T 16 T 16 4 8 24 4 4 5 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT G 17 G 17 4 8 24 4 4 4 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT Q 18 Q 18 4 8 24 3 4 4 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT N 19 N 19 4 11 24 3 4 5 6 8 9 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT W 20 W 20 10 11 24 7 10 10 10 10 10 10 12 13 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT A 21 A 21 10 11 24 7 10 10 10 10 10 10 12 13 14 15 18 21 22 25 27 28 28 29 29 LCS_GDT S 22 S 22 10 11 24 7 10 10 10 10 10 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT L 23 L 23 10 11 24 7 10 10 10 10 10 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT A 24 A 24 10 11 24 7 10 10 10 10 10 10 11 13 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT A 25 A 25 10 11 24 7 10 10 10 10 10 11 12 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT N 26 N 26 10 11 24 7 10 10 10 10 10 10 11 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT E 27 E 27 10 11 24 6 10 10 10 10 10 10 11 12 12 14 17 21 22 25 27 28 28 29 29 LCS_GDT L 28 L 28 10 11 24 6 10 10 10 10 10 10 11 12 15 19 20 21 22 25 27 28 28 29 29 LCS_GDT R 29 R 29 10 11 24 6 10 10 10 10 10 10 11 14 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT V 30 V 30 4 6 24 3 4 5 5 6 7 10 11 13 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT T 31 T 31 4 6 24 3 4 5 5 7 7 9 11 13 17 19 20 21 22 25 27 28 28 29 29 LCS_GDT E 32 E 32 4 6 24 3 4 5 5 7 7 9 10 13 14 19 20 21 22 23 24 27 27 29 29 LCS_GDT R 33 R 33 3 9 24 3 4 4 5 7 7 10 10 11 11 12 15 17 20 22 24 24 25 27 28 LCS_GDT P 34 P 34 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 14 16 17 18 23 24 LCS_GDT F 35 F 35 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 14 14 17 18 19 20 LCS_GDT W 36 W 36 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 14 14 17 18 19 20 LCS_GDT I 37 I 37 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 14 14 15 16 18 19 LCS_GDT S 38 S 38 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 14 14 15 16 18 20 LCS_GDT S 39 S 39 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 13 14 14 15 16 17 LCS_GDT F 40 F 40 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 13 13 13 14 16 17 LCS_GDT I 41 I 41 9 10 14 3 8 9 9 9 9 10 10 12 12 12 13 13 13 13 13 13 15 16 17 LCS_GDT G 42 G 42 9 10 14 3 6 9 9 9 9 10 10 12 12 12 13 13 13 13 13 13 15 16 17 LCS_GDT R 43 R 43 4 10 14 3 4 4 6 7 8 10 10 12 12 12 13 13 13 13 13 13 14 14 14 LCS_GDT S 44 S 44 4 6 14 3 4 4 5 7 8 10 10 12 12 12 13 13 13 13 13 13 14 14 14 LCS_GDT K 45 K 45 4 6 14 0 3 4 6 7 8 10 10 12 12 12 13 13 13 13 13 13 13 14 14 LCS_AVERAGE LCS_A: 26.83 ( 14.31 18.90 47.26 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 10 10 10 10 11 12 14 17 19 20 21 22 25 27 28 28 29 29 GDT PERCENT_AT 15.91 22.73 22.73 22.73 22.73 22.73 25.00 27.27 31.82 38.64 43.18 45.45 47.73 50.00 56.82 61.36 63.64 63.64 65.91 65.91 GDT RMS_LOCAL 0.28 0.56 0.56 0.56 0.56 0.56 2.52 2.82 3.46 3.83 4.07 4.19 4.32 4.49 5.23 5.56 5.72 5.72 5.93 5.93 GDT RMS_ALL_AT 21.58 21.51 21.51 21.51 21.51 21.51 19.41 19.50 19.81 18.70 18.52 18.39 18.42 18.62 18.95 19.23 19.41 19.41 19.09 19.09 # Checking swapping # possible swapping detected: E 15 E 15 # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 13.202 0 0.655 0.619 14.296 0.000 0.000 - LGA V 3 V 3 13.169 0 0.045 0.933 16.868 0.000 0.000 16.309 LGA Q 4 Q 4 10.294 0 0.660 1.171 10.685 0.000 0.000 6.476 LGA G 5 G 5 10.677 0 0.108 0.108 10.678 0.000 0.000 - LGA P 6 P 6 9.720 0 0.676 0.615 10.349 0.000 0.000 8.262 LGA W 7 W 7 11.012 0 0.550 1.134 12.373 0.000 0.000 9.089 LGA V 8 V 8 11.032 0 0.050 0.960 11.807 0.000 0.000 9.811 LGA G 9 G 9 11.819 0 0.295 0.295 11.819 0.000 0.000 - LGA S 10 S 10 6.467 0 0.652 0.592 8.342 0.455 0.303 6.936 LGA S 11 S 11 3.127 0 0.062 0.659 5.368 11.818 9.697 5.267 LGA Y 12 Y 12 5.769 0 0.045 0.916 8.897 1.818 0.606 8.897 LGA V 13 V 13 3.466 0 0.576 1.305 6.821 14.545 9.870 4.408 LGA A 14 A 14 2.563 0 0.612 0.592 5.088 53.182 42.545 - LGA E 15 E 15 2.129 0 0.041 1.381 3.356 40.000 41.212 1.850 LGA T 16 T 16 2.338 0 0.124 0.249 4.233 41.364 32.208 2.876 LGA G 17 G 17 0.929 0 0.703 0.703 3.019 61.818 61.818 - LGA Q 18 Q 18 2.131 0 0.040 1.182 10.177 37.727 16.768 8.596 LGA N 19 N 19 2.323 0 0.074 0.206 5.184 35.909 27.045 2.602 LGA W 20 W 20 4.549 0 0.639 0.452 10.387 9.091 2.597 10.359 LGA A 21 A 21 5.455 0 0.037 0.035 7.465 9.545 7.636 - LGA S 22 S 22 3.547 0 0.030 0.645 5.788 19.545 13.030 5.788 LGA L 23 L 23 3.238 0 0.035 0.318 5.770 18.636 14.318 3.050 LGA A 24 A 24 5.217 0 0.019 0.021 6.205 4.091 3.273 - LGA A 25 A 25 1.531 0 0.019 0.019 4.446 26.364 34.182 - LGA N 26 N 26 7.315 0 0.027 0.814 10.384 0.455 0.227 8.120 LGA E 27 E 27 10.908 0 0.061 1.183 13.105 0.000 0.000 11.883 LGA L 28 L 28 9.399 0 0.220 0.415 11.457 0.000 0.000 8.734 LGA R 29 R 29 8.478 0 0.309 1.519 13.148 0.000 0.000 12.613 LGA V 30 V 30 8.891 0 0.123 0.315 9.948 0.000 0.000 9.733 LGA T 31 T 31 8.018 0 0.118 1.047 10.510 0.000 0.000 9.160 LGA E 32 E 32 9.317 0 0.080 1.107 14.137 0.000 0.000 13.542 LGA R 33 R 33 10.533 0 0.080 1.208 17.092 0.000 0.000 17.092 LGA P 34 P 34 13.938 0 0.623 0.605 15.809 0.000 0.000 12.557 LGA F 35 F 35 19.793 0 0.036 1.304 26.198 0.000 0.000 26.198 LGA W 36 W 36 23.783 0 0.089 1.119 26.943 0.000 0.000 22.108 LGA I 37 I 37 28.891 0 0.070 0.303 32.642 0.000 0.000 29.771 LGA S 38 S 38 32.720 0 0.083 0.629 34.663 0.000 0.000 32.501 LGA S 39 S 39 30.739 0 0.148 0.254 33.104 0.000 0.000 27.113 LGA F 40 F 40 35.045 0 0.046 0.923 39.024 0.000 0.000 30.748 LGA I 41 I 41 40.319 0 0.068 1.101 43.108 0.000 0.000 40.309 LGA G 42 G 42 42.816 0 0.059 0.059 43.558 0.000 0.000 - LGA R 43 R 43 43.486 0 0.036 0.935 44.107 0.000 0.000 41.846 LGA S 44 S 44 45.556 0 0.703 0.765 49.477 0.000 0.000 49.477 LGA K 45 K 45 46.133 0 0.643 0.815 49.160 0.000 0.000 49.160 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 16.149 16.059 16.507 8.781 7.212 3.688 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 12 2.82 33.523 28.879 0.411 LGA_LOCAL RMSD: 2.818 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 19.499 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 16.149 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.890939 * X + 0.449289 * Y + 0.066086 * Z + -70.988274 Y_new = -0.339529 * X + 0.755666 * Y + -0.560079 * Z + 60.453682 Z_new = -0.301576 * X + 0.476559 * Y + 0.825799 * Z + 35.624058 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.364100 0.306345 0.523402 [DEG: -20.8614 17.5523 29.9887 ] ZXZ: 0.117450 0.599179 -0.564203 [DEG: 6.7294 34.3304 -32.3265 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS041_4-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS041_4-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 12 2.82 28.879 16.15 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS041_4-D1 PFRMAT TS TARGET T0953s2 MODEL 4 PARENT N/A ATOM 12 N ALA 2 21.776 27.938 14.167 1.00 0.00 N ATOM 14 CA ALA 2 21.761 29.384 14.449 1.00 0.00 C ATOM 16 C ALA 2 20.803 30.130 13.509 1.00 0.00 C ATOM 17 O ALA 2 20.237 31.160 13.892 1.00 0.00 O ATOM 15 CB ALA 2 23.170 29.960 14.328 1.00 0.00 C ATOM 18 N VAL 3 20.636 29.598 12.288 1.00 0.00 N ATOM 20 CA VAL 3 19.759 30.167 11.243 1.00 0.00 C ATOM 24 C VAL 3 18.370 29.494 11.163 1.00 0.00 C ATOM 25 O VAL 3 18.257 28.276 11.356 1.00 0.00 O ATOM 21 CB VAL 3 20.455 30.189 9.823 1.00 0.00 C ATOM 22 CG1 VAL 3 21.473 31.319 9.764 1.00 0.00 C ATOM 23 CG2 VAL 3 21.148 28.845 9.498 1.00 0.00 C ATOM 26 N GLN 4 17.333 30.303 10.899 1.00 0.00 N ATOM 28 CA GLN 4 15.933 29.847 10.783 1.00 0.00 C ATOM 36 C GLN 4 15.427 29.776 9.331 1.00 0.00 C ATOM 37 O GLN 4 14.638 28.887 8.990 1.00 0.00 O ATOM 29 CB GLN 4 14.989 30.704 11.662 1.00 0.00 C ATOM 30 CG GLN 4 15.156 32.239 11.586 1.00 0.00 C ATOM 31 CD GLN 4 14.182 32.976 12.486 1.00 0.00 C ATOM 32 OE1 GLN 4 14.483 33.254 13.647 1.00 0.00 O ATOM 33 NE2 GLN 4 13.008 33.295 11.954 1.00 0.00 N ATOM 38 N GLY 5 15.892 30.714 8.500 1.00 0.00 N ATOM 40 CA GLY 5 15.500 30.771 7.097 1.00 0.00 C ATOM 41 C GLY 5 16.217 31.878 6.331 1.00 0.00 C ATOM 42 O GLY 5 17.216 32.388 6.853 1.00 0.00 O ATOM 43 N PRO 6 15.760 32.281 5.105 1.00 0.00 N ATOM 45 CA PRO 6 16.400 33.346 4.305 1.00 0.00 C ATOM 48 C PRO 6 16.402 34.752 4.945 1.00 0.00 C ATOM 49 O PRO 6 15.505 35.072 5.734 1.00 0.00 O ATOM 46 CB PRO 6 15.581 33.340 3.011 1.00 0.00 C ATOM 47 CG PRO 6 15.146 31.926 2.891 1.00 0.00 C ATOM 44 CD PRO 6 14.697 31.639 4.300 1.00 0.00 C ATOM 50 N TRP 7 17.409 35.564 4.575 1.00 0.00 N ATOM 52 CA TRP 7 17.657 36.961 5.036 1.00 0.00 C ATOM 64 C TRP 7 17.296 37.377 6.481 1.00 0.00 C ATOM 65 O TRP 7 18.201 37.658 7.277 1.00 0.00 O ATOM 53 CB TRP 7 17.144 38.022 4.012 1.00 0.00 C ATOM 54 CG TRP 7 16.191 37.538 2.886 1.00 0.00 C ATOM 58 CD1 TRP 7 16.555 37.145 1.619 1.00 0.00 C ATOM 55 CD2 TRP 7 14.750 37.440 2.930 1.00 0.00 C ATOM 59 NE1 TRP 7 15.444 36.812 0.883 1.00 0.00 N ATOM 56 CE2 TRP 7 14.323 36.981 1.652 1.00 0.00 C ATOM 57 CE3 TRP 7 13.776 37.695 3.922 1.00 0.00 C ATOM 61 CZ2 TRP 7 12.960 36.768 1.333 1.00 0.00 C ATOM 62 CZ3 TRP 7 12.409 37.483 3.606 1.00 0.00 C ATOM 63 CH2 TRP 7 12.022 37.023 2.317 1.00 0.00 C ATOM 66 N VAL 8 15.993 37.411 6.805 1.00 0.00 N ATOM 68 CA VAL 8 15.485 37.782 8.141 1.00 0.00 C ATOM 72 C VAL 8 14.981 36.536 8.911 1.00 0.00 C ATOM 73 O VAL 8 15.202 36.423 10.123 1.00 0.00 O ATOM 69 CB VAL 8 14.392 38.949 8.046 1.00 0.00 C ATOM 70 CG1 VAL 8 13.095 38.484 7.357 1.00 0.00 C ATOM 71 CG2 VAL 8 14.120 39.586 9.420 1.00 0.00 C ATOM 74 N GLY 9 14.316 35.627 8.192 1.00 0.00 N ATOM 76 CA GLY 9 13.785 34.406 8.785 1.00 0.00 C ATOM 77 C GLY 9 12.879 33.647 7.832 1.00 0.00 C ATOM 78 O GLY 9 13.298 33.311 6.717 1.00 0.00 O ATOM 79 N SER 10 11.644 33.383 8.278 1.00 0.00 N ATOM 81 CA SER 10 10.623 32.659 7.503 1.00 0.00 C ATOM 85 C SER 10 9.526 33.598 6.969 1.00 0.00 C ATOM 86 O SER 10 9.134 34.549 7.660 1.00 0.00 O ATOM 82 CB SER 10 10.001 31.541 8.353 1.00 0.00 C ATOM 83 OG SER 10 9.500 32.038 9.585 1.00 0.00 O ATOM 87 N SER 11 9.058 33.327 5.744 1.00 0.00 N ATOM 89 CA SER 11 8.013 34.116 5.065 1.00 0.00 C ATOM 92 C SER 11 6.714 33.329 4.833 1.00 0.00 C ATOM 93 O SER 11 5.622 33.911 4.887 1.00 0.00 O ATOM 94 CB SER 11 8.539 34.661 3.725 1.00 0.00 C ATOM 90 OG SER 11 9.054 33.623 2.906 1.00 0.00 O ATOM 95 N TYR 12 6.843 32.017 4.592 1.00 0.00 N ATOM 97 CA TYR 12 5.707 31.109 4.333 1.00 0.00 C ATOM 107 C TYR 12 5.322 30.286 5.581 1.00 0.00 C ATOM 108 O TYR 12 4.129 30.082 5.839 1.00 0.00 O ATOM 98 CB TYR 12 6.042 30.170 3.143 1.00 0.00 C ATOM 99 CG TYR 12 4.860 29.548 2.380 1.00 0.00 C ATOM 100 CD1 TYR 12 4.321 28.293 2.759 1.00 0.00 C ATOM 102 CD2 TYR 12 4.294 30.194 1.252 1.00 0.00 C ATOM 101 CE1 TYR 12 3.250 27.698 2.036 1.00 0.00 C ATOM 103 CE2 TYR 12 3.223 29.606 0.523 1.00 0.00 C ATOM 104 CZ TYR 12 2.711 28.362 0.922 1.00 0.00 C ATOM 105 OH TYR 12 1.675 27.787 0.222 1.00 0.00 O ATOM 109 N VAL 13 6.332 29.826 6.334 1.00 0.00 N ATOM 111 CA VAL 13 6.153 29.018 7.559 1.00 0.00 C ATOM 115 C VAL 13 6.166 29.837 8.871 1.00 0.00 C ATOM 116 O VAL 13 6.919 30.813 8.986 1.00 0.00 O ATOM 112 CB VAL 13 7.174 27.814 7.637 1.00 0.00 C ATOM 113 CG1 VAL 13 6.734 26.702 6.697 1.00 0.00 C ATOM 114 CG2 VAL 13 8.614 28.251 7.287 1.00 0.00 C ATOM 117 N ALA 14 5.309 29.443 9.824 1.00 0.00 N ATOM 119 CA ALA 14 5.179 30.098 11.138 1.00 0.00 C ATOM 121 C ALA 14 5.702 29.198 12.267 1.00 0.00 C ATOM 122 O ALA 14 5.501 27.977 12.231 1.00 0.00 O ATOM 120 CB ALA 14 3.721 30.476 11.398 1.00 0.00 C ATOM 123 N GLU 15 6.370 29.813 13.255 1.00 0.00 N ATOM 125 CA GLU 15 6.955 29.131 14.431 1.00 0.00 C ATOM 131 C GLU 15 5.947 28.537 15.444 1.00 0.00 C ATOM 132 O GLU 15 6.130 27.405 15.906 1.00 0.00 O ATOM 126 CB GLU 15 7.986 30.045 15.145 1.00 0.00 C ATOM 127 CG GLU 15 7.570 31.514 15.458 1.00 0.00 C ATOM 128 CD GLU 15 8.023 32.514 14.399 1.00 0.00 C ATOM 129 OE1 GLU 15 9.153 33.034 14.514 1.00 0.00 O ATOM 130 OE2 GLU 15 7.246 32.777 13.457 1.00 0.00 O ATOM 133 N THR 16 4.902 29.315 15.769 1.00 0.00 N ATOM 135 CA THR 16 3.830 28.932 16.717 1.00 0.00 C ATOM 140 C THR 16 2.901 27.804 16.222 1.00 0.00 C ATOM 141 O THR 16 2.529 26.918 17.002 1.00 0.00 O ATOM 136 CB THR 16 2.976 30.165 17.141 1.00 0.00 C ATOM 137 OG1 THR 16 2.540 30.877 15.976 1.00 0.00 O ATOM 139 CG2 THR 16 3.778 31.099 18.041 1.00 0.00 C ATOM 142 N GLY 17 2.562 27.841 14.928 1.00 0.00 N ATOM 144 CA GLY 17 1.691 26.838 14.328 1.00 0.00 C ATOM 145 C GLY 17 1.104 27.291 13.003 1.00 0.00 C ATOM 146 O GLY 17 1.431 28.383 12.523 1.00 0.00 O ATOM 147 N GLN 18 0.240 26.448 12.424 1.00 0.00 N ATOM 149 CA GLN 18 -0.435 26.709 11.140 1.00 0.00 C ATOM 157 C GLN 18 -1.932 26.987 11.340 1.00 0.00 C ATOM 158 O GLN 18 -2.546 26.431 12.258 1.00 0.00 O ATOM 150 CB GLN 18 -0.253 25.525 10.175 1.00 0.00 C ATOM 151 CG GLN 18 1.171 25.329 9.664 1.00 0.00 C ATOM 152 CD GLN 18 1.293 24.149 8.719 1.00 0.00 C ATOM 153 OE1 GLN 18 1.566 23.026 9.144 1.00 0.00 O ATOM 154 NE2 GLN 18 1.092 24.398 7.430 1.00 0.00 N ATOM 159 N ASN 19 -2.501 27.838 10.466 1.00 0.00 N ATOM 161 CA ASN 19 -3.926 28.278 10.441 1.00 0.00 C ATOM 168 C ASN 19 -4.428 29.076 11.661 1.00 0.00 C ATOM 169 O ASN 19 -5.072 30.118 11.489 1.00 0.00 O ATOM 162 CB ASN 19 -4.893 27.110 10.135 1.00 0.00 C ATOM 163 CG ASN 19 -4.686 26.517 8.746 1.00 0.00 C ATOM 164 OD1 ASN 19 -3.907 25.578 8.568 1.00 0.00 O ATOM 165 ND2 ASN 19 -5.397 27.055 7.758 1.00 0.00 N ATOM 170 N TRP 20 -4.121 28.586 12.872 1.00 0.00 N ATOM 172 CA TRP 20 -4.511 29.203 14.160 1.00 0.00 C ATOM 184 C TRP 20 -3.811 30.544 14.451 1.00 0.00 C ATOM 185 O TRP 20 -4.434 31.459 15.008 1.00 0.00 O ATOM 173 CB TRP 20 -4.259 28.222 15.326 1.00 0.00 C ATOM 174 CG TRP 20 -5.070 26.903 15.294 1.00 0.00 C ATOM 178 CD1 TRP 20 -4.656 25.696 14.778 1.00 0.00 C ATOM 175 CD2 TRP 20 -6.392 26.668 15.834 1.00 0.00 C ATOM 179 NE1 TRP 20 -5.625 24.739 14.960 1.00 0.00 N ATOM 176 CE2 TRP 20 -6.699 25.297 15.601 1.00 0.00 C ATOM 177 CE3 TRP 20 -7.347 27.479 16.490 1.00 0.00 C ATOM 181 CZ2 TRP 20 -7.925 24.711 16.002 1.00 0.00 C ATOM 182 CZ3 TRP 20 -8.575 26.896 16.891 1.00 0.00 C ATOM 183 CH2 TRP 20 -8.845 25.521 16.641 1.00 0.00 C ATOM 186 N ALA 21 -2.532 30.644 14.060 1.00 0.00 N ATOM 188 CA ALA 21 -1.687 31.844 14.243 1.00 0.00 C ATOM 190 C ALA 21 -2.157 33.031 13.386 1.00 0.00 C ATOM 191 O ALA 21 -2.127 34.180 13.845 1.00 0.00 O ATOM 189 CB ALA 21 -0.233 31.512 13.931 1.00 0.00 C ATOM 192 N SER 22 -2.600 32.732 12.155 1.00 0.00 N ATOM 194 CA SER 22 -3.109 33.720 11.181 1.00 0.00 C ATOM 198 C SER 22 -4.454 34.320 11.640 1.00 0.00 C ATOM 199 O SER 22 -4.638 35.543 11.584 1.00 0.00 O ATOM 195 CB SER 22 -3.253 33.075 9.794 1.00 0.00 C ATOM 196 OG SER 22 -3.551 34.038 8.795 1.00 0.00 O ATOM 200 N LEU 23 -5.356 33.454 12.129 1.00 0.00 N ATOM 202 CA LEU 23 -6.694 33.835 12.630 1.00 0.00 C ATOM 207 C LEU 23 -6.603 34.654 13.930 1.00 0.00 C ATOM 208 O LEU 23 -7.329 35.641 14.094 1.00 0.00 O ATOM 203 CB LEU 23 -7.577 32.589 12.854 1.00 0.00 C ATOM 204 CG LEU 23 -8.085 31.709 11.693 1.00 0.00 C ATOM 205 CD1 LEU 23 -8.173 30.270 12.174 1.00 0.00 C ATOM 206 CD2 LEU 23 -9.448 32.174 11.146 1.00 0.00 C ATOM 209 N ALA 24 -5.681 34.252 14.818 1.00 0.00 N ATOM 211 CA ALA 24 -5.423 34.909 16.115 1.00 0.00 C ATOM 213 C ALA 24 -4.806 36.304 15.920 1.00 0.00 C ATOM 214 O ALA 24 -5.193 37.256 16.608 1.00 0.00 O ATOM 212 CB ALA 24 -4.509 34.042 16.972 1.00 0.00 C ATOM 215 N ALA 25 -3.900 36.414 14.934 1.00 0.00 N ATOM 217 CA ALA 25 -3.196 37.661 14.576 1.00 0.00 C ATOM 219 C ALA 25 -4.153 38.712 13.986 1.00 0.00 C ATOM 220 O ALA 25 -4.076 39.889 14.350 1.00 0.00 O ATOM 218 CB ALA 25 -2.065 37.365 13.595 1.00 0.00 C ATOM 221 N ASN 26 -5.040 38.268 13.081 1.00 0.00 N ATOM 223 CA ASN 26 -6.057 39.116 12.424 1.00 0.00 C ATOM 230 C ASN 26 -7.167 39.586 13.383 1.00 0.00 C ATOM 231 O ASN 26 -7.616 40.735 13.292 1.00 0.00 O ATOM 224 CB ASN 26 -6.673 38.393 11.216 1.00 0.00 C ATOM 225 CG ASN 26 -5.754 38.383 10.001 1.00 0.00 C ATOM 226 OD1 ASN 26 -4.961 37.459 9.811 1.00 0.00 O ATOM 227 ND2 ASN 26 -5.872 39.407 9.159 1.00 0.00 N ATOM 232 N GLU 27 -7.593 38.691 14.288 1.00 0.00 N ATOM 234 CA GLU 27 -8.639 38.953 15.302 1.00 0.00 C ATOM 239 C GLU 27 -8.234 39.943 16.410 1.00 0.00 C ATOM 240 O GLU 27 -9.062 40.753 16.842 1.00 0.00 O ATOM 241 CB GLU 27 -9.133 37.643 15.930 1.00 0.00 C ATOM 235 CG GLU 27 -10.106 36.856 15.058 1.00 0.00 C ATOM 236 CD GLU 27 -10.569 35.567 15.713 1.00 0.00 C ATOM 237 OE1 GLU 27 -11.594 35.596 16.426 1.00 0.00 O ATOM 238 OE2 GLU 27 -9.910 34.525 15.512 1.00 0.00 O ATOM 242 N LEU 28 -6.969 39.869 16.854 1.00 0.00 N ATOM 244 CA LEU 28 -6.402 40.743 17.905 1.00 0.00 C ATOM 249 C LEU 28 -6.241 42.222 17.512 1.00 0.00 C ATOM 250 O LEU 28 -6.453 43.108 18.350 1.00 0.00 O ATOM 245 CB LEU 28 -5.056 40.193 18.419 1.00 0.00 C ATOM 246 CG LEU 28 -4.969 39.006 19.401 1.00 0.00 C ATOM 247 CD1 LEU 28 -3.654 38.280 19.169 1.00 0.00 C ATOM 248 CD2 LEU 28 -5.084 39.434 20.877 1.00 0.00 C ATOM 251 N ARG 29 -5.881 42.473 16.245 1.00 0.00 N ATOM 253 CA ARG 29 -5.672 43.829 15.690 1.00 0.00 C ATOM 266 C ARG 29 -6.961 44.622 15.363 1.00 0.00 C ATOM 267 O ARG 29 -6.960 45.859 15.426 1.00 0.00 O ATOM 254 CB ARG 29 -4.719 43.786 14.471 1.00 0.00 C ATOM 255 CG ARG 29 -5.060 42.781 13.343 1.00 0.00 C ATOM 256 CD ARG 29 -4.049 42.833 12.199 1.00 0.00 C ATOM 257 NE ARG 29 -2.732 42.313 12.578 1.00 0.00 N ATOM 259 CZ ARG 29 -1.673 42.242 11.771 1.00 0.00 C ATOM 260 NH1 ARG 29 -0.531 41.750 12.232 1.00 0.00 N ATOM 263 NH2 ARG 29 -1.739 42.655 10.509 1.00 0.00 N ATOM 268 N VAL 30 -8.040 43.894 15.037 1.00 0.00 N ATOM 270 CA VAL 30 -9.358 44.472 14.694 1.00 0.00 C ATOM 274 C VAL 30 -10.307 44.326 15.909 1.00 0.00 C ATOM 275 O VAL 30 -10.259 43.312 16.620 1.00 0.00 O ATOM 271 CB VAL 30 -9.992 43.788 13.412 1.00 0.00 C ATOM 272 CG1 VAL 30 -11.094 44.671 12.799 1.00 0.00 C ATOM 273 CG2 VAL 30 -8.920 43.503 12.357 1.00 0.00 C ATOM 276 N THR 31 -11.129 45.361 16.142 1.00 0.00 N ATOM 278 CA THR 31 -12.105 45.416 17.250 1.00 0.00 C ATOM 283 C THR 31 -13.561 45.225 16.765 1.00 0.00 C ATOM 284 O THR 31 -14.370 44.594 17.458 1.00 0.00 O ATOM 279 CB THR 31 -11.940 46.742 18.115 1.00 0.00 C ATOM 280 OG1 THR 31 -12.970 46.813 19.112 1.00 0.00 O ATOM 282 CG2 THR 31 -11.958 48.021 17.246 1.00 0.00 C ATOM 285 N GLU 32 -13.864 45.758 15.567 1.00 0.00 N ATOM 287 CA GLU 32 -15.188 45.716 14.884 1.00 0.00 C ATOM 293 C GLU 32 -16.369 46.343 15.652 1.00 0.00 C ATOM 294 O GLU 32 -16.526 46.107 16.857 1.00 0.00 O ATOM 288 CB GLU 32 -15.559 44.293 14.413 1.00 0.00 C ATOM 289 CG GLU 32 -14.681 43.744 13.292 1.00 0.00 C ATOM 290 CD GLU 32 -15.084 42.345 12.863 1.00 0.00 C ATOM 291 OE1 GLU 32 -14.557 41.370 13.438 1.00 0.00 O ATOM 292 OE2 GLU 32 -15.924 42.221 11.948 1.00 0.00 O ATOM 295 N ARG 33 -17.189 47.132 14.933 1.00 0.00 N ATOM 297 CA ARG 33 -18.393 47.856 15.432 1.00 0.00 C ATOM 310 C ARG 33 -18.178 48.818 16.634 1.00 0.00 C ATOM 311 O ARG 33 -17.580 48.411 17.640 1.00 0.00 O ATOM 298 CB ARG 33 -19.571 46.899 15.718 1.00 0.00 C ATOM 299 CG ARG 33 -20.166 46.230 14.477 1.00 0.00 C ATOM 300 CD ARG 33 -21.327 45.299 14.822 1.00 0.00 C ATOM 301 NE ARG 33 -20.899 44.094 15.538 1.00 0.00 N ATOM 303 CZ ARG 33 -21.709 43.121 15.958 1.00 0.00 C ATOM 304 NH1 ARG 33 -21.199 42.077 16.596 1.00 0.00 N ATOM 307 NH2 ARG 33 -23.020 43.177 15.747 1.00 0.00 N ATOM 312 N PRO 34 -18.648 50.105 16.543 1.00 0.00 N ATOM 314 CA PRO 34 -18.491 51.092 17.636 1.00 0.00 C ATOM 317 C PRO 34 -19.249 50.767 18.944 1.00 0.00 C ATOM 318 O PRO 34 -18.764 51.090 20.035 1.00 0.00 O ATOM 315 CB PRO 34 -19.020 52.386 17.008 1.00 0.00 C ATOM 316 CG PRO 34 -18.730 52.211 15.562 1.00 0.00 C ATOM 313 CD PRO 34 -19.185 50.793 15.345 1.00 0.00 C ATOM 319 N PHE 35 -20.423 50.134 18.810 1.00 0.00 N ATOM 321 CA PHE 35 -21.287 49.743 19.940 1.00 0.00 C ATOM 329 C PHE 35 -21.351 48.217 20.100 1.00 0.00 C ATOM 330 O PHE 35 -21.281 47.486 19.104 1.00 0.00 O ATOM 322 CB PHE 35 -22.720 50.311 19.755 1.00 0.00 C ATOM 323 CG PHE 35 -22.810 51.836 19.763 1.00 0.00 C ATOM 324 CD1 PHE 35 -22.713 52.574 18.557 1.00 0.00 C ATOM 325 CD2 PHE 35 -23.034 52.544 20.969 1.00 0.00 C ATOM 326 CE1 PHE 35 -22.835 53.991 18.551 1.00 0.00 C ATOM 327 CE2 PHE 35 -23.158 53.960 20.978 1.00 0.00 C ATOM 328 CZ PHE 35 -23.059 54.686 19.766 1.00 0.00 C ATOM 331 N TRP 36 -21.478 47.758 21.354 1.00 0.00 N ATOM 333 CA TRP 36 -21.557 46.328 21.708 1.00 0.00 C ATOM 345 C TRP 36 -22.950 46.009 22.286 1.00 0.00 C ATOM 346 O TRP 36 -23.607 46.897 22.839 1.00 0.00 O ATOM 334 CB TRP 36 -20.452 45.968 22.733 1.00 0.00 C ATOM 335 CG TRP 36 -19.972 44.488 22.748 1.00 0.00 C ATOM 339 CD1 TRP 36 -20.436 43.483 23.564 1.00 0.00 C ATOM 336 CD2 TRP 36 -18.929 43.892 21.943 1.00 0.00 C ATOM 340 NE1 TRP 36 -19.756 42.315 23.320 1.00 0.00 N ATOM 337 CE2 TRP 36 -18.828 42.527 22.335 1.00 0.00 C ATOM 338 CE3 TRP 36 -18.070 44.375 20.928 1.00 0.00 C ATOM 342 CZ2 TRP 36 -17.901 41.632 21.749 1.00 0.00 C ATOM 343 CZ3 TRP 36 -17.140 43.481 20.340 1.00 0.00 C ATOM 344 CH2 TRP 36 -17.068 42.124 20.759 1.00 0.00 C ATOM 347 N ILE 37 -23.373 44.742 22.155 1.00 0.00 N ATOM 349 CA ILE 37 -24.677 44.226 22.634 1.00 0.00 C ATOM 354 C ILE 37 -24.801 44.184 24.187 1.00 0.00 C ATOM 355 O ILE 37 -25.882 44.448 24.730 1.00 0.00 O ATOM 350 CB ILE 37 -25.021 42.830 21.934 1.00 0.00 C ATOM 352 CG1 ILE 37 -26.494 42.429 22.169 1.00 0.00 C ATOM 351 CG2 ILE 37 -23.996 41.726 22.336 1.00 0.00 C ATOM 353 CD1 ILE 37 -27.161 41.680 21.008 1.00 0.00 C ATOM 356 N SER 38 -23.689 43.860 24.862 1.00 0.00 N ATOM 358 CA SER 38 -23.589 43.751 26.333 1.00 0.00 C ATOM 362 C SER 38 -23.748 45.084 27.096 1.00 0.00 C ATOM 363 O SER 38 -24.330 45.102 28.188 1.00 0.00 O ATOM 359 CB SER 38 -22.264 43.079 26.721 1.00 0.00 C ATOM 360 OG SER 38 -22.222 42.742 28.099 1.00 0.00 O ATOM 364 N SER 39 -23.235 46.176 26.511 1.00 0.00 N ATOM 366 CA SER 39 -23.276 47.538 27.091 1.00 0.00 C ATOM 370 C SER 39 -24.683 48.139 27.298 1.00 0.00 C ATOM 371 O SER 39 -24.927 48.790 28.322 1.00 0.00 O ATOM 367 CB SER 39 -22.417 48.495 26.254 1.00 0.00 C ATOM 368 OG SER 39 -22.813 48.491 24.891 1.00 0.00 O ATOM 372 N PHE 40 -25.585 47.915 26.330 1.00 0.00 N ATOM 374 CA PHE 40 -26.981 48.403 26.356 1.00 0.00 C ATOM 382 C PHE 40 -27.879 47.735 27.414 1.00 0.00 C ATOM 383 O PHE 40 -28.728 48.403 28.018 1.00 0.00 O ATOM 375 CB PHE 40 -27.632 48.267 24.958 1.00 0.00 C ATOM 376 CG PHE 40 -27.086 49.225 23.902 1.00 0.00 C ATOM 377 CD1 PHE 40 -27.663 50.505 23.717 1.00 0.00 C ATOM 378 CD2 PHE 40 -26.020 48.839 23.056 1.00 0.00 C ATOM 379 CE1 PHE 40 -27.187 51.387 22.707 1.00 0.00 C ATOM 380 CE2 PHE 40 -25.533 49.709 22.042 1.00 0.00 C ATOM 381 CZ PHE 40 -26.119 50.987 21.867 1.00 0.00 C ATOM 384 N ILE 41 -27.675 46.425 27.624 1.00 0.00 N ATOM 386 CA ILE 41 -28.436 45.608 28.595 1.00 0.00 C ATOM 391 C ILE 41 -27.766 45.474 29.980 1.00 0.00 C ATOM 392 O ILE 41 -26.533 45.410 30.071 1.00 0.00 O ATOM 387 CB ILE 41 -28.822 44.185 28.011 1.00 0.00 C ATOM 389 CG1 ILE 41 -27.623 43.496 27.314 1.00 0.00 C ATOM 388 CG2 ILE 41 -30.020 44.337 27.060 1.00 0.00 C ATOM 390 CD1 ILE 41 -27.565 41.971 27.478 1.00 0.00 C ATOM 393 N GLY 42 -28.589 45.450 31.033 1.00 0.00 N ATOM 395 CA GLY 42 -28.100 45.327 32.400 1.00 0.00 C ATOM 396 C GLY 42 -29.206 44.979 33.381 1.00 0.00 C ATOM 397 O GLY 42 -28.922 44.567 34.512 1.00 0.00 O ATOM 398 N ARG 43 -30.459 45.150 32.940 1.00 0.00 N ATOM 400 CA ARG 43 -31.665 44.868 33.738 1.00 0.00 C ATOM 413 C ARG 43 -32.363 43.547 33.336 1.00 0.00 C ATOM 414 O ARG 43 -32.102 43.019 32.249 1.00 0.00 O ATOM 401 CB ARG 43 -32.646 46.068 33.712 1.00 0.00 C ATOM 402 CG ARG 43 -32.871 46.769 32.351 1.00 0.00 C ATOM 403 CD ARG 43 -33.813 47.966 32.469 1.00 0.00 C ATOM 404 NE ARG 43 -33.223 49.086 33.208 1.00 0.00 N ATOM 406 CZ ARG 43 -33.828 50.249 33.452 1.00 0.00 C ATOM 407 NH1 ARG 43 -33.187 51.188 34.134 1.00 0.00 N ATOM 410 NH2 ARG 43 -35.065 50.485 33.026 1.00 0.00 N ATOM 415 N SER 44 -33.238 43.040 34.217 1.00 0.00 N ATOM 417 CA SER 44 -33.987 41.785 34.021 1.00 0.00 C ATOM 421 C SER 44 -35.350 41.946 33.314 1.00 0.00 C ATOM 422 O SER 44 -35.934 40.953 32.859 1.00 0.00 O ATOM 418 CB SER 44 -34.167 41.074 35.371 1.00 0.00 C ATOM 419 OG SER 44 -34.786 41.919 36.327 1.00 0.00 O ATOM 423 N LYS 45 -35.828 43.194 33.212 1.00 0.00 N ATOM 425 CA LYS 45 -37.116 43.532 32.569 1.00 0.00 C ATOM 433 C LYS 45 -36.986 44.174 31.174 1.00 0.00 C ATOM 434 O LYS 45 -37.790 43.877 30.284 1.00 0.00 O ATOM 435 CB LYS 45 -37.992 44.406 33.500 1.00 0.00 C ATOM 426 CG LYS 45 -37.308 45.608 34.189 1.00 0.00 C ATOM 427 CD LYS 45 -38.286 46.370 35.069 1.00 0.00 C ATOM 428 CE LYS 45 -37.612 47.553 35.746 1.00 0.00 C ATOM 429 NZ LYS 45 -38.558 48.308 36.613 1.00 0.00 N TER END