####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 323), selected 41 , name T0953s2TS004_3-D1 # Molecule2: number of CA atoms 44 ( 344), selected 41 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS004_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 6 - 32 4.99 8.06 LCS_AVERAGE: 53.66 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 20 - 30 1.90 10.25 LCS_AVERAGE: 19.01 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 20 - 27 0.93 10.61 LCS_AVERAGE: 11.92 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 5 G 5 3 5 13 0 3 4 4 8 10 12 12 13 13 18 19 19 20 22 24 28 30 32 39 LCS_GDT P 6 P 6 3 6 27 2 3 4 8 9 11 12 12 14 16 18 19 19 23 25 26 30 31 36 39 LCS_GDT W 7 W 7 3 8 27 3 3 4 6 8 10 12 14 17 19 23 24 27 32 34 36 36 37 38 39 LCS_GDT V 8 V 8 3 8 27 3 3 4 6 7 9 10 12 16 18 23 24 27 32 34 36 36 37 38 39 LCS_GDT G 9 G 9 3 8 27 3 3 4 5 7 9 11 15 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT S 10 S 10 6 8 27 3 6 6 6 8 9 12 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT S 11 S 11 6 8 27 3 6 6 6 8 11 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT Y 12 Y 12 6 8 27 4 6 6 6 8 9 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT V 13 V 13 6 8 27 4 6 6 6 8 9 11 14 16 19 22 26 28 32 34 36 36 37 38 39 LCS_GDT A 14 A 14 6 8 27 4 6 6 6 8 9 10 11 13 18 22 26 28 32 34 36 36 37 38 39 LCS_GDT E 15 E 15 6 8 27 4 6 6 6 8 9 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT T 16 T 16 3 6 27 3 3 3 5 5 5 8 11 14 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT G 17 G 17 3 6 27 3 3 4 5 6 9 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT Q 18 Q 18 4 6 27 3 3 4 5 6 9 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT N 19 N 19 4 6 27 3 3 4 6 8 9 12 14 17 19 23 24 28 32 34 36 36 37 38 39 LCS_GDT W 20 W 20 8 11 27 6 6 9 10 10 11 12 13 17 18 23 24 27 32 34 36 36 37 38 39 LCS_GDT A 21 A 21 8 11 27 6 6 9 10 10 11 12 13 17 20 23 24 28 32 34 36 36 37 38 39 LCS_GDT S 22 S 22 8 11 27 6 6 9 10 10 11 12 14 17 19 23 24 28 32 34 36 36 37 38 39 LCS_GDT L 23 L 23 8 11 27 6 6 9 10 10 11 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT A 24 A 24 8 11 27 6 6 9 10 10 11 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT A 25 A 25 8 11 27 6 6 9 10 10 11 12 14 17 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT N 26 N 26 8 11 27 6 6 9 10 10 11 12 14 17 19 23 26 28 32 34 36 36 37 38 39 LCS_GDT E 27 E 27 8 11 27 6 6 9 10 10 11 12 14 17 19 23 26 28 32 34 36 36 37 38 39 LCS_GDT L 28 L 28 7 11 27 6 6 9 10 10 11 12 14 17 19 23 26 28 32 34 36 36 37 38 39 LCS_GDT R 29 R 29 7 11 27 6 6 9 10 10 11 12 14 17 19 21 23 25 28 30 34 35 37 38 39 LCS_GDT V 30 V 30 4 11 27 4 4 4 5 5 8 12 14 17 19 23 24 26 31 34 36 36 37 38 39 LCS_GDT T 31 T 31 4 6 27 4 4 4 5 8 9 11 14 17 19 23 24 28 32 34 36 36 37 38 39 LCS_GDT E 32 E 32 4 6 27 4 4 4 5 6 9 11 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT R 33 R 33 4 6 20 4 4 4 6 7 9 12 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT P 34 P 34 3 6 18 2 3 3 4 7 9 12 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT F 35 F 35 3 7 18 3 3 4 5 7 9 12 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT W 36 W 36 6 9 18 4 4 6 7 8 9 10 13 18 20 22 26 27 30 32 34 36 37 38 39 LCS_GDT I 37 I 37 6 9 18 4 5 6 7 8 9 10 16 18 20 22 26 27 30 33 36 36 37 38 39 LCS_GDT S 38 S 38 6 9 18 4 5 6 7 8 9 12 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT S 39 S 39 6 9 18 4 5 6 7 8 9 11 16 18 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT F 40 F 40 6 9 18 4 5 6 7 8 9 11 14 16 20 22 26 28 32 34 36 36 37 38 39 LCS_GDT I 41 I 41 6 9 18 4 5 6 7 8 9 12 16 18 20 23 26 28 32 34 36 36 37 38 39 LCS_GDT G 42 G 42 4 9 18 3 4 4 7 8 9 11 14 15 18 23 24 28 32 34 36 36 37 38 39 LCS_GDT R 43 R 43 4 9 16 3 4 6 7 8 9 11 14 15 16 17 21 27 32 34 36 36 37 38 39 LCS_GDT S 44 S 44 3 9 14 0 3 3 3 8 9 10 14 15 16 17 19 26 31 34 36 36 37 38 38 LCS_GDT K 45 K 45 3 3 14 0 3 3 3 3 3 5 8 8 12 12 13 14 15 15 17 23 23 30 32 LCS_AVERAGE LCS_A: 28.20 ( 11.92 19.01 53.66 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 6 9 10 10 11 12 16 18 20 23 26 28 32 34 36 36 37 38 39 GDT PERCENT_AT 13.64 13.64 20.45 22.73 22.73 25.00 27.27 36.36 40.91 45.45 52.27 59.09 63.64 72.73 77.27 81.82 81.82 84.09 86.36 88.64 GDT RMS_LOCAL 0.27 0.27 1.10 1.19 1.19 1.79 2.08 3.21 3.36 3.60 4.29 4.26 4.84 5.32 5.50 5.69 5.67 5.79 5.93 6.35 GDT RMS_ALL_AT 11.48 11.48 10.50 10.59 10.59 10.71 10.98 7.61 7.69 7.70 7.50 7.82 7.23 7.00 6.91 6.91 6.99 6.96 6.94 6.94 # Checking swapping # possible swapping detected: Y 12 Y 12 # possible swapping detected: E 15 E 15 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA G 5 G 5 14.242 0 0.044 0.044 14.242 0.000 0.000 - LGA P 6 P 6 15.251 0 0.058 0.082 17.278 0.000 0.000 17.087 LGA W 7 W 7 9.795 0 0.382 0.476 14.600 0.000 0.000 14.123 LGA V 8 V 8 8.834 0 0.594 0.614 12.216 0.000 0.000 11.042 LGA G 9 G 9 4.627 0 0.452 0.452 5.834 19.545 19.545 - LGA S 10 S 10 2.754 0 0.315 0.572 4.619 36.818 25.758 4.267 LGA S 11 S 11 2.480 0 0.221 0.645 5.829 55.455 36.970 5.829 LGA Y 12 Y 12 3.832 0 0.030 1.268 15.359 13.636 4.545 15.359 LGA V 13 V 13 5.979 0 0.011 0.053 9.912 1.364 0.779 9.912 LGA A 14 A 14 5.989 0 0.219 0.224 7.087 0.909 0.727 - LGA E 15 E 15 2.755 0 0.583 0.743 6.201 16.364 10.505 6.201 LGA T 16 T 16 5.429 0 0.099 1.095 9.667 5.000 2.857 7.486 LGA G 17 G 17 2.171 0 0.501 0.501 2.618 42.273 42.273 - LGA Q 18 Q 18 3.980 0 0.644 1.474 7.181 5.909 2.626 6.970 LGA N 19 N 19 7.774 0 0.048 1.015 10.565 0.000 0.000 7.086 LGA W 20 W 20 8.785 0 0.616 0.449 18.771 0.000 0.000 18.771 LGA A 21 A 21 6.838 0 0.036 0.037 8.483 0.000 0.000 - LGA S 22 S 22 7.456 0 0.046 0.617 8.920 0.000 0.000 8.498 LGA L 23 L 23 3.841 0 0.079 0.234 6.541 10.000 5.682 6.541 LGA A 24 A 24 3.385 0 0.213 0.218 4.072 13.182 11.636 - LGA A 25 A 25 5.930 0 0.155 0.161 8.255 1.364 1.091 - LGA N 26 N 26 6.565 0 0.056 0.125 8.986 0.000 0.227 6.907 LGA E 27 E 27 7.430 0 0.078 0.890 9.543 0.000 0.000 5.165 LGA L 28 L 28 7.608 0 0.048 0.071 10.661 0.000 0.455 4.614 LGA R 29 R 29 11.914 0 0.537 1.277 19.924 0.000 0.000 19.924 LGA V 30 V 30 10.933 0 0.628 0.515 12.168 0.000 0.000 10.830 LGA T 31 T 31 10.017 0 0.009 0.056 14.167 0.000 0.000 11.630 LGA E 32 E 32 4.108 0 0.117 1.333 7.054 20.909 9.495 6.696 LGA R 33 R 33 3.087 0 0.404 1.131 6.833 23.636 10.248 6.833 LGA P 34 P 34 2.582 0 0.088 0.094 3.289 22.727 27.792 2.384 LGA F 35 F 35 2.612 0 0.631 1.198 9.794 24.545 8.926 9.794 LGA W 36 W 36 4.398 0 0.622 1.301 13.826 16.818 4.805 13.826 LGA I 37 I 37 4.087 0 0.083 0.931 7.528 19.091 9.773 7.528 LGA S 38 S 38 2.181 0 0.084 0.620 4.133 32.727 25.758 4.133 LGA S 39 S 39 3.485 0 0.087 0.155 5.268 15.455 12.121 4.399 LGA F 40 F 40 4.725 0 0.087 1.228 8.031 5.000 1.818 7.958 LGA I 41 I 41 2.865 0 0.583 0.509 4.748 14.545 17.500 4.098 LGA G 42 G 42 8.825 0 0.215 0.215 10.682 0.000 0.000 - LGA R 43 R 43 9.964 0 0.583 1.468 14.684 0.000 0.000 14.684 LGA S 44 S 44 11.636 0 0.635 0.747 14.849 0.000 0.000 10.102 LGA K 45 K 45 18.187 0 0.600 1.038 20.956 0.000 0.000 20.953 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 323 323 100.00 44 33 SUMMARY(RMSD_GDC): 6.834 6.733 8.442 9.483 6.680 1.873 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 44 4.0 16 3.21 38.636 32.744 0.484 LGA_LOCAL RMSD: 3.206 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.610 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 6.834 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.425410 * X + -0.740125 * Y + 0.520807 * Z + 9.850749 Y_new = -0.010999 * X + 0.579663 * Y + 0.814782 * Z + 36.395676 Z_new = -0.904934 * X + 0.340888 * Y + -0.254736 * Z + 25.584818 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.115743 1.131224 2.212548 [DEG: -178.5189 64.8144 126.7697 ] ZXZ: 2.572848 1.828371 -1.210536 [DEG: 147.4133 104.7579 -69.3586 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS004_3-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS004_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 44 4.0 16 3.21 32.744 6.83 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS004_3-D1 PFRMAT TS TARGET T0953s2 MODEL 3 PARENT 3cxm_A ATOM 3635 N GLY 5 8.964 26.348 8.952 1.00 1.17 N ATOM 3636 CA GLY 5 8.850 25.064 8.241 1.00 1.17 C ATOM 3637 C GLY 5 9.903 24.975 7.177 1.00 1.17 C ATOM 3638 O GLY 5 10.427 26.030 6.829 1.00 1.17 O ATOM 3639 N PRO 6 10.257 23.795 6.638 1.00 1.02 N ATOM 3640 CA PRO 6 11.324 23.857 5.630 1.00 1.02 C ATOM 3641 C PRO 6 10.851 24.466 4.309 1.00 1.02 C ATOM 3642 O PRO 6 11.639 24.986 3.522 1.00 1.02 O ATOM 3643 CB PRO 6 11.729 22.389 5.484 1.00 1.02 C ATOM 3644 CG PRO 6 10.470 21.646 5.734 1.00 1.02 C ATOM 3645 CD PRO 6 9.818 22.405 6.869 1.00 1.02 C ATOM 3646 N TRP 7 9.545 24.420 4.093 1.00 0.32 N ATOM 3647 CA TRP 7 8.911 24.969 2.909 1.00 0.32 C ATOM 3648 C TRP 7 8.984 26.490 2.877 1.00 0.32 C ATOM 3649 O TRP 7 8.921 27.150 3.917 1.00 0.32 O ATOM 3650 CB TRP 7 7.450 24.524 2.922 1.00 0.32 C ATOM 3651 CG TRP 7 7.332 23.060 3.235 1.00 0.32 C ATOM 3652 CD1 TRP 7 6.856 22.499 4.382 1.00 0.32 C ATOM 3653 CD2 TRP 7 7.734 21.954 2.407 1.00 0.32 C ATOM 3654 NE1 TRP 7 6.960 21.137 4.353 1.00 0.32 N ATOM 3655 CE2 TRP 7 7.499 20.763 3.153 1.00 0.32 C ATOM 3656 CE3 TRP 7 8.287 21.845 1.114 1.00 0.32 C ATOM 3657 CZ2 TRP 7 7.800 19.485 2.644 1.00 0.32 C ATOM 3658 CZ3 TRP 7 8.558 20.557 0.583 1.00 0.32 C ATOM 3659 CH2 TRP 7 8.304 19.388 1.360 1.00 0.32 C ATOM 3660 N VAL 8 9.082 27.057 1.688 1.00 1.03 N ATOM 3661 CA VAL 8 9.087 28.508 1.518 1.00 1.03 C ATOM 3662 C VAL 8 7.621 28.889 1.340 1.00 1.03 C ATOM 3663 O VAL 8 7.053 28.788 0.250 1.00 1.03 O ATOM 3664 CB VAL 8 9.975 28.949 0.322 1.00 1.03 C ATOM 3665 CG1 VAL 8 10.006 30.479 0.189 1.00 1.03 C ATOM 3666 CG2 VAL 8 11.411 28.430 0.521 1.00 1.03 C ATOM 3667 N GLY 9 6.983 29.262 2.439 1.00 1.35 N ATOM 3668 CA GLY 9 5.564 29.586 2.420 1.00 1.35 C ATOM 3669 C GLY 9 5.198 30.639 3.441 1.00 1.35 C ATOM 3670 O GLY 9 4.106 30.613 3.994 1.00 1.35 O ATOM 3671 N SER 10 6.154 31.507 3.749 1.00 2.48 N ATOM 3672 CA SER 10 6.043 32.525 4.798 1.00 2.48 C ATOM 3673 C SER 10 5.612 31.943 6.142 1.00 2.48 C ATOM 3674 O SER 10 4.836 32.535 6.897 1.00 2.48 O ATOM 3675 CB SER 10 5.137 33.670 4.349 1.00 2.48 C ATOM 3676 OG SER 10 5.664 34.228 3.154 1.00 2.48 O ATOM 3677 N SER 11 6.172 30.787 6.474 1.00 2.78 N ATOM 3678 CA SER 11 5.923 30.137 7.762 1.00 2.78 C ATOM 3679 C SER 11 6.757 30.801 8.850 1.00 2.78 C ATOM 3680 O SER 11 6.715 30.426 10.007 1.00 2.78 O ATOM 3681 CB SER 11 6.252 28.652 7.657 1.00 2.78 C ATOM 3682 OG SER 11 7.548 28.445 7.123 1.00 2.78 O ATOM 3683 N TYR 12 7.494 31.833 8.474 1.00 2.84 N ATOM 3684 CA TYR 12 8.070 32.740 9.456 1.00 2.84 C ATOM 3685 C TYR 12 6.989 33.609 10.103 1.00 2.84 C ATOM 3686 O TYR 12 7.049 33.907 11.291 1.00 2.84 O ATOM 3687 CB TYR 12 9.155 33.592 8.795 1.00 2.84 C ATOM 3688 CG TYR 12 10.330 32.731 8.377 1.00 2.84 C ATOM 3689 CD1 TYR 12 10.505 32.333 7.036 1.00 2.84 C ATOM 3690 CD2 TYR 12 11.243 32.257 9.340 1.00 2.84 C ATOM 3691 CE1 TYR 12 11.527 31.408 6.679 1.00 2.84 C ATOM 3692 CE2 TYR 12 12.249 31.320 8.994 1.00 2.84 C ATOM 3693 CZ TYR 12 12.361 30.884 7.673 1.00 2.84 C ATOM 3694 OH TYR 12 13.282 29.915 7.364 1.00 2.84 O ATOM 3695 N VAL 13 5.979 33.978 9.325 1.00 2.56 N ATOM 3696 CA VAL 13 4.884 34.820 9.815 1.00 2.56 C ATOM 3697 C VAL 13 3.764 33.955 10.383 1.00 2.56 C ATOM 3698 O VAL 13 3.254 34.214 11.468 1.00 2.56 O ATOM 3699 CB VAL 13 4.307 35.699 8.662 1.00 2.56 C ATOM 3700 CG1 VAL 13 3.135 36.567 9.136 1.00 2.56 C ATOM 3701 CG2 VAL 13 5.408 36.593 8.057 1.00 2.56 C ATOM 3702 N ALA 14 3.397 32.907 9.657 1.00 2.80 N ATOM 3703 CA ALA 14 2.293 32.034 10.062 1.00 2.80 C ATOM 3704 C ALA 14 2.701 31.005 11.117 1.00 2.80 C ATOM 3705 O ALA 14 1.888 30.194 11.539 1.00 2.80 O ATOM 3706 CB ALA 14 1.726 31.320 8.835 1.00 2.80 C ATOM 3707 N GLU 15 3.976 31.039 11.478 1.00 2.97 N ATOM 3708 CA GLU 15 4.631 30.044 12.325 1.00 2.97 C ATOM 3709 C GLU 15 4.663 28.630 11.703 1.00 2.97 C ATOM 3710 O GLU 15 4.017 28.317 10.699 1.00 2.97 O ATOM 3711 CB GLU 15 4.061 30.071 13.757 1.00 2.97 C ATOM 3712 CG GLU 15 5.125 30.258 14.840 1.00 2.97 C ATOM 3713 CD GLU 15 6.111 29.113 14.830 1.00 2.97 C ATOM 3714 OE1 GLU 15 5.699 27.980 15.152 1.00 2.97 O ATOM 3715 OE2 GLU 15 7.224 29.261 14.280 1.00 2.97 O ATOM 3716 N THR 16 5.502 27.777 12.269 1.00 2.61 N ATOM 3717 CA THR 16 5.678 26.395 11.838 1.00 2.61 C ATOM 3718 C THR 16 4.718 25.460 12.570 1.00 2.61 C ATOM 3719 O THR 16 4.248 24.466 12.008 1.00 2.61 O ATOM 3720 CB THR 16 7.116 25.980 12.187 1.00 2.61 C ATOM 3721 OG1 THR 16 8.020 26.920 11.601 1.00 2.61 O ATOM 3722 CG2 THR 16 7.489 24.599 11.695 1.00 2.61 C ATOM 3723 N GLY 17 4.437 25.765 13.830 1.00 1.42 N ATOM 3724 CA GLY 17 3.566 24.928 14.638 1.00 1.42 C ATOM 3725 C GLY 17 2.122 25.080 14.217 1.00 1.42 C ATOM 3726 O GLY 17 1.494 26.091 14.506 1.00 1.42 O ATOM 3727 N GLN 18 1.584 24.087 13.523 1.00 0.86 N ATOM 3728 CA GLN 18 0.239 24.181 12.958 1.00 0.86 C ATOM 3729 C GLN 18 -0.861 24.487 13.970 1.00 0.86 C ATOM 3730 O GLN 18 -1.786 25.225 13.653 1.00 0.86 O ATOM 3731 CB GLN 18 -0.099 22.875 12.232 1.00 0.86 C ATOM 3732 CG GLN 18 -1.462 22.856 11.515 1.00 0.86 C ATOM 3733 CD GLN 18 -1.544 23.865 10.391 1.00 0.86 C ATOM 3734 OE1 GLN 18 -0.890 23.712 9.362 1.00 0.86 O ATOM 3735 NE2 GLN 18 -2.319 24.899 10.572 1.00 0.86 N ATOM 3736 N ASN 19 -0.792 23.970 15.189 1.00 0.98 N ATOM 3737 CA ASN 19 -1.877 24.240 16.128 1.00 0.98 C ATOM 3738 C ASN 19 -1.827 25.704 16.537 1.00 0.98 C ATOM 3739 O ASN 19 -2.863 26.334 16.690 1.00 0.98 O ATOM 3740 CB ASN 19 -1.815 23.333 17.360 1.00 0.98 C ATOM 3741 CG ASN 19 -2.068 21.887 17.019 1.00 0.98 C ATOM 3742 OD1 ASN 19 -2.851 21.568 16.127 1.00 0.98 O ATOM 3743 ND2 ASN 19 -1.399 20.998 17.697 1.00 0.98 N ATOM 3744 N TRP 20 -0.638 26.279 16.645 1.00 1.37 N ATOM 3745 CA TRP 20 -0.540 27.705 16.935 1.00 1.37 C ATOM 3746 C TRP 20 -0.963 28.528 15.733 1.00 1.37 C ATOM 3747 O TRP 20 -1.637 29.535 15.901 1.00 1.37 O ATOM 3748 CB TRP 20 0.877 28.103 17.335 1.00 1.37 C ATOM 3749 CG TRP 20 1.277 27.529 18.650 1.00 1.37 C ATOM 3750 CD1 TRP 20 2.248 26.612 18.885 1.00 1.37 C ATOM 3751 CD2 TRP 20 0.749 27.870 19.945 1.00 1.37 C ATOM 3752 NE1 TRP 20 2.389 26.363 20.222 1.00 1.37 N ATOM 3753 CE2 TRP 20 1.469 27.106 20.907 1.00 1.37 C ATOM 3754 CE3 TRP 20 -0.255 28.753 20.395 1.00 1.37 C ATOM 3755 CZ2 TRP 20 1.205 27.193 22.289 1.00 1.37 C ATOM 3756 CZ3 TRP 20 -0.527 28.840 21.782 1.00 1.37 C ATOM 3757 CH2 TRP 20 0.205 28.049 22.714 1.00 1.37 C ATOM 3758 N ALA 21 -0.629 28.078 14.532 1.00 1.30 N ATOM 3759 CA ALA 21 -1.040 28.767 13.312 1.00 1.30 C ATOM 3760 C ALA 21 -2.567 28.826 13.219 1.00 1.30 C ATOM 3761 O ALA 21 -3.131 29.837 12.816 1.00 1.30 O ATOM 3762 CB ALA 21 -0.452 28.053 12.090 1.00 1.30 C ATOM 3763 N SER 22 -3.234 27.747 13.605 1.00 0.97 N ATOM 3764 CA SER 22 -4.693 27.701 13.615 1.00 0.97 C ATOM 3765 C SER 22 -5.326 28.476 14.770 1.00 0.97 C ATOM 3766 O SER 22 -6.394 29.071 14.611 1.00 0.97 O ATOM 3767 CB SER 22 -5.153 26.249 13.684 1.00 0.97 C ATOM 3768 OG SER 22 -4.664 25.524 12.566 1.00 0.97 O ATOM 3769 N LEU 23 -4.693 28.501 15.936 1.00 1.01 N ATOM 3770 CA LEU 23 -5.216 29.282 17.060 1.00 1.01 C ATOM 3771 C LEU 23 -5.087 30.771 16.756 1.00 1.01 C ATOM 3772 O LEU 23 -6.042 31.534 16.905 1.00 1.01 O ATOM 3773 CB LEU 23 -4.443 28.962 18.346 1.00 1.01 C ATOM 3774 CG LEU 23 -4.769 27.633 19.046 1.00 1.01 C ATOM 3775 CD1 LEU 23 -3.687 27.311 20.071 1.00 1.01 C ATOM 3776 CD2 LEU 23 -6.133 27.662 19.733 1.00 1.01 C ATOM 3777 N ALA 24 -3.921 31.172 16.275 1.00 1.41 N ATOM 3778 CA ALA 24 -3.645 32.563 15.941 1.00 1.41 C ATOM 3779 C ALA 24 -4.227 32.940 14.578 1.00 1.41 C ATOM 3780 O ALA 24 -4.051 34.060 14.125 1.00 1.41 O ATOM 3781 CB ALA 24 -2.133 32.813 15.973 1.00 1.41 C ATOM 3782 N ALA 25 -4.958 32.050 13.923 1.00 1.71 N ATOM 3783 CA ALA 25 -5.552 32.357 12.623 1.00 1.71 C ATOM 3784 C ALA 25 -6.565 33.503 12.672 1.00 1.71 C ATOM 3785 O ALA 25 -6.898 34.068 11.636 1.00 1.71 O ATOM 3786 CB ALA 25 -6.210 31.112 12.038 1.00 1.71 C ATOM 3787 N ASN 26 -7.078 33.855 13.844 1.00 2.23 N ATOM 3788 CA ASN 26 -7.938 35.038 13.951 1.00 2.23 C ATOM 3789 C ASN 26 -7.099 36.309 14.033 1.00 2.23 C ATOM 3790 O ASN 26 -7.535 37.375 13.617 1.00 2.23 O ATOM 3791 CB ASN 26 -8.821 34.976 15.202 1.00 2.23 C ATOM 3792 CG ASN 26 -9.920 33.959 15.086 1.00 2.23 C ATOM 3793 OD1 ASN 26 -10.388 33.649 14.000 1.00 2.23 O ATOM 3794 ND2 ASN 26 -10.337 33.421 16.194 1.00 2.23 N ATOM 3795 N GLU 27 -5.909 36.187 14.597 1.00 2.43 N ATOM 3796 CA GLU 27 -5.028 37.325 14.849 1.00 2.43 C ATOM 3797 C GLU 27 -4.212 37.658 13.608 1.00 2.43 C ATOM 3798 O GLU 27 -4.012 38.805 13.264 1.00 2.43 O ATOM 3799 CB GLU 27 -4.043 36.957 15.960 1.00 2.43 C ATOM 3800 CG GLU 27 -4.686 36.556 17.285 1.00 2.43 C ATOM 3801 CD GLU 27 -3.657 35.965 18.233 1.00 2.43 C ATOM 3802 OE1 GLU 27 -2.507 36.458 18.258 1.00 2.43 O ATOM 3803 OE2 GLU 27 -3.966 34.980 18.934 1.00 2.43 O ATOM 3804 N LEU 28 -3.775 36.621 12.908 1.00 2.53 N ATOM 3805 CA LEU 28 -2.936 36.739 11.712 1.00 2.53 C ATOM 3806 C LEU 28 -3.777 36.990 10.462 1.00 2.53 C ATOM 3807 O LEU 28 -3.313 36.860 9.319 1.00 2.53 O ATOM 3808 CB LEU 28 -2.113 35.454 11.566 1.00 2.53 C ATOM 3809 CG LEU 28 -1.108 35.138 12.687 1.00 2.53 C ATOM 3810 CD1 LEU 28 -0.548 33.736 12.497 1.00 2.53 C ATOM 3811 CD2 LEU 28 0.042 36.142 12.736 1.00 2.53 C ATOM 3812 N ARG 29 -5.042 37.306 10.690 1.00 1.97 N ATOM 3813 CA ARG 29 -6.031 37.505 9.636 1.00 1.97 C ATOM 3814 C ARG 29 -5.994 38.928 9.103 1.00 1.97 C ATOM 3815 O ARG 29 -5.711 39.869 9.835 1.00 1.97 O ATOM 3816 CB ARG 29 -7.409 37.199 10.227 1.00 1.97 C ATOM 3817 CG ARG 29 -8.512 36.945 9.212 1.00 1.97 C ATOM 3818 CD ARG 29 -9.614 36.098 9.807 1.00 1.97 C ATOM 3819 NE ARG 29 -10.271 36.752 10.944 1.00 1.97 N ATOM 3820 CZ ARG 29 -11.222 36.229 11.701 1.00 1.97 C ATOM 3821 NH1 ARG 29 -11.611 36.881 12.758 1.00 1.97 N ATOM 3822 NH2 ARG 29 -11.782 35.075 11.458 1.00 1.97 N ATOM 3823 N VAL 30 -6.394 39.084 7.851 1.00 1.68 N ATOM 3824 CA VAL 30 -6.505 40.387 7.185 1.00 1.68 C ATOM 3825 C VAL 30 -7.395 41.354 7.976 1.00 1.68 C ATOM 3826 O VAL 30 -7.158 42.562 8.044 1.00 1.68 O ATOM 3827 CB VAL 30 -7.111 40.170 5.759 1.00 1.68 C ATOM 3828 CG1 VAL 30 -7.077 41.435 4.923 1.00 1.68 C ATOM 3829 CG2 VAL 30 -6.355 39.070 5.006 1.00 1.68 C ATOM 3830 N THR 31 -8.403 40.796 8.627 1.00 1.99 N ATOM 3831 CA THR 31 -9.382 41.566 9.387 1.00 1.99 C ATOM 3832 C THR 31 -8.862 42.183 10.679 1.00 1.99 C ATOM 3833 O THR 31 -9.510 43.061 11.237 1.00 1.99 O ATOM 3834 CB THR 31 -10.538 40.643 9.828 1.00 1.99 C ATOM 3835 OG1 THR 31 -10.019 39.625 10.689 1.00 1.99 O ATOM 3836 CG2 THR 31 -11.192 39.950 8.640 1.00 1.99 C ATOM 3837 N GLU 32 -7.753 41.694 11.210 1.00 2.37 N ATOM 3838 CA GLU 32 -7.348 42.073 12.560 1.00 2.37 C ATOM 3839 C GLU 32 -6.707 43.454 12.650 1.00 2.37 C ATOM 3840 O GLU 32 -5.664 43.734 12.038 1.00 2.37 O ATOM 3841 CB GLU 32 -6.422 40.995 13.123 1.00 2.37 C ATOM 3842 CG GLU 32 -5.948 41.235 14.551 1.00 2.37 C ATOM 3843 CD GLU 32 -7.027 41.162 15.622 1.00 2.37 C ATOM 3844 OE1 GLU 32 -8.200 40.811 15.353 1.00 2.37 O ATOM 3845 OE2 GLU 32 -6.692 41.512 16.780 1.00 2.37 O ATOM 3846 N ARG 33 -7.378 44.310 13.418 1.00 2.70 N ATOM 3847 CA ARG 33 -6.952 45.689 13.705 1.00 2.70 C ATOM 3848 C ARG 33 -6.651 46.471 12.418 1.00 2.70 C ATOM 3849 O ARG 33 -5.604 47.114 12.312 1.00 2.70 O ATOM 3850 CB ARG 33 -5.738 45.679 14.652 1.00 2.70 C ATOM 3851 CG ARG 33 -5.970 45.102 16.043 1.00 2.70 C ATOM 3852 CD ARG 33 -4.633 44.769 16.714 1.00 2.70 C ATOM 3853 NE ARG 33 -4.479 43.314 16.860 1.00 2.70 N ATOM 3854 CZ ARG 33 -3.356 42.608 16.861 1.00 2.70 C ATOM 3855 NH1 ARG 33 -3.450 41.326 17.081 1.00 2.70 N ATOM 3856 NH2 ARG 33 -2.180 43.113 16.594 1.00 2.70 N ATOM 3857 N PRO 34 -7.562 46.430 11.425 1.00 1.97 N ATOM 3858 CA PRO 34 -7.406 45.636 10.194 1.00 1.97 C ATOM 3859 C PRO 34 -6.083 45.866 9.475 1.00 1.97 C ATOM 3860 O PRO 34 -5.575 46.979 9.452 1.00 1.97 O ATOM 3861 CB PRO 34 -8.595 46.079 9.339 1.00 1.97 C ATOM 3862 CG PRO 34 -9.609 46.501 10.336 1.00 1.97 C ATOM 3863 CD PRO 34 -8.819 47.198 11.405 1.00 1.97 C ATOM 3864 N PHE 35 -5.532 44.805 8.900 1.00 1.79 N ATOM 3865 CA PHE 35 -4.207 44.796 8.260 1.00 1.79 C ATOM 3866 C PHE 35 -3.035 45.127 9.197 1.00 1.79 C ATOM 3867 O PHE 35 -1.953 45.447 8.717 1.00 1.79 O ATOM 3868 CB PHE 35 -4.139 45.726 7.032 1.00 1.79 C ATOM 3869 CG PHE 35 -5.239 45.506 6.031 1.00 1.79 C ATOM 3870 CD1 PHE 35 -6.454 46.206 6.128 1.00 1.79 C ATOM 3871 CD2 PHE 35 -5.045 44.624 4.957 1.00 1.79 C ATOM 3872 CE1 PHE 35 -7.483 46.008 5.179 1.00 1.79 C ATOM 3873 CE2 PHE 35 -6.050 44.442 3.980 1.00 1.79 C ATOM 3874 CZ PHE 35 -7.280 45.123 4.100 1.00 1.79 C ATOM 3875 N TRP 36 -3.190 45.043 10.515 1.00 1.80 N ATOM 3876 CA TRP 36 -2.072 45.385 11.409 1.00 1.80 C ATOM 3877 C TRP 36 -0.892 44.435 11.249 1.00 1.80 C ATOM 3878 O TRP 36 0.265 44.824 11.278 1.00 1.80 O ATOM 3879 CB TRP 36 -2.527 45.358 12.866 1.00 1.80 C ATOM 3880 CG TRP 36 -1.496 45.878 13.825 1.00 1.80 C ATOM 3881 CD1 TRP 36 -0.553 45.163 14.501 1.00 1.80 C ATOM 3882 CD2 TRP 36 -1.272 47.250 14.193 1.00 1.80 C ATOM 3883 NE1 TRP 36 0.222 45.973 15.285 1.00 1.80 N ATOM 3884 CE2 TRP 36 -0.191 47.267 15.123 1.00 1.80 C ATOM 3885 CE3 TRP 36 -1.866 48.474 13.821 1.00 1.80 C ATOM 3886 CZ2 TRP 36 0.289 48.463 15.697 1.00 1.80 C ATOM 3887 CZ3 TRP 36 -1.368 49.681 14.378 1.00 1.80 C ATOM 3888 CH2 TRP 36 -0.294 49.657 15.313 1.00 1.80 C ATOM 3889 N ILE 37 -1.187 43.164 11.035 1.00 1.81 N ATOM 3890 CA ILE 37 -0.121 42.182 10.845 1.00 1.81 C ATOM 3891 C ILE 37 0.568 42.482 9.514 1.00 1.81 C ATOM 3892 O ILE 37 1.783 42.399 9.386 1.00 1.81 O ATOM 3893 CB ILE 37 -0.682 40.736 10.901 1.00 1.81 C ATOM 3894 CG1 ILE 37 -1.470 40.519 12.210 1.00 1.81 C ATOM 3895 CG2 ILE 37 0.440 39.680 10.750 1.00 1.81 C ATOM 3896 CD1 ILE 37 -0.740 40.743 13.555 1.00 1.81 C ATOM 3897 N SER 38 -0.192 42.924 8.526 1.00 1.20 N ATOM 3898 CA SER 38 0.402 43.275 7.242 1.00 1.20 C ATOM 3899 C SER 38 1.287 44.513 7.340 1.00 1.20 C ATOM 3900 O SER 38 2.315 44.582 6.680 1.00 1.20 O ATOM 3901 CB SER 38 -0.692 43.513 6.211 1.00 1.20 C ATOM 3902 OG SER 38 -1.601 42.422 6.221 1.00 1.20 O ATOM 3903 N SER 39 0.931 45.477 8.177 1.00 1.22 N ATOM 3904 CA SER 39 1.764 46.664 8.356 1.00 1.22 C ATOM 3905 C SER 39 2.959 46.377 9.261 1.00 1.22 C ATOM 3906 O SER 39 3.984 47.035 9.138 1.00 1.22 O ATOM 3907 CB SER 39 0.932 47.825 8.896 1.00 1.22 C ATOM 3908 OG SER 39 0.366 47.524 10.153 1.00 1.22 O ATOM 3909 N PHE 40 2.882 45.346 10.092 1.00 1.10 N ATOM 3910 CA PHE 40 4.053 44.832 10.808 1.00 1.10 C ATOM 3911 C PHE 40 5.044 44.189 9.830 1.00 1.10 C ATOM 3912 O PHE 40 6.247 44.439 9.900 1.00 1.10 O ATOM 3913 CB PHE 40 3.588 43.846 11.890 1.00 1.10 C ATOM 3914 CG PHE 40 4.506 42.668 12.097 1.00 1.10 C ATOM 3915 CD1 PHE 40 5.723 42.831 12.774 1.00 1.10 C ATOM 3916 CD2 PHE 40 4.147 41.387 11.636 1.00 1.10 C ATOM 3917 CE1 PHE 40 6.586 41.727 13.003 1.00 1.10 C ATOM 3918 CE2 PHE 40 4.999 40.272 11.848 1.00 1.10 C ATOM 3919 CZ PHE 40 6.222 40.445 12.537 1.00 1.10 C ATOM 3920 N ILE 41 4.547 43.438 8.854 1.00 1.02 N ATOM 3921 CA ILE 41 5.417 42.868 7.818 1.00 1.02 C ATOM 3922 C ILE 41 5.967 44.020 6.976 1.00 1.02 C ATOM 3923 O ILE 41 7.146 44.062 6.639 1.00 1.02 O ATOM 3924 CB ILE 41 4.657 41.851 6.911 1.00 1.02 C ATOM 3925 CG1 ILE 41 4.130 40.670 7.750 1.00 1.02 C ATOM 3926 CG2 ILE 41 5.573 41.312 5.775 1.00 1.02 C ATOM 3927 CD1 ILE 41 3.013 39.866 7.079 1.00 1.02 C ATOM 3928 N GLY 42 5.129 45.001 6.677 1.00 0.65 N ATOM 3929 CA GLY 42 5.583 46.178 5.955 1.00 0.65 C ATOM 3930 C GLY 42 6.696 46.909 6.681 1.00 0.65 C ATOM 3931 O GLY 42 7.700 47.283 6.068 1.00 0.65 O ATOM 3932 N ARG 43 6.555 47.064 7.991 1.00 0.51 N ATOM 3933 CA ARG 43 7.574 47.695 8.829 1.00 0.51 C ATOM 3934 C ARG 43 8.871 46.919 8.782 1.00 0.51 C ATOM 3935 O ARG 43 9.922 47.527 8.638 1.00 0.51 O ATOM 3936 CB ARG 43 7.087 47.781 10.286 1.00 0.51 C ATOM 3937 CG ARG 43 8.056 48.361 11.325 1.00 0.51 C ATOM 3938 CD ARG 43 8.256 49.862 11.232 1.00 0.51 C ATOM 3939 NE ARG 43 9.207 50.254 10.182 1.00 0.51 N ATOM 3940 CZ ARG 43 9.415 51.488 9.748 1.00 0.51 C ATOM 3941 NH1 ARG 43 10.334 51.696 8.861 1.00 0.51 N ATOM 3942 NH2 ARG 43 8.749 52.527 10.172 1.00 0.51 N ATOM 3943 N SER 44 8.825 45.600 8.887 1.00 0.63 N ATOM 3944 CA SER 44 10.062 44.825 8.886 1.00 0.63 C ATOM 3945 C SER 44 10.736 44.847 7.524 1.00 0.63 C ATOM 3946 O SER 44 11.958 44.912 7.438 1.00 0.63 O ATOM 3947 CB SER 44 9.798 43.391 9.328 1.00 0.63 C ATOM 3948 OG SER 44 8.947 42.694 8.437 1.00 0.63 O ATOM 3949 N LYS 45 9.967 44.874 6.442 1.00 0.22 N ATOM 3950 CA LYS 45 10.575 45.018 5.119 1.00 0.22 C ATOM 3951 C LYS 45 11.277 46.356 5.015 1.00 0.22 C ATOM 3952 O LYS 45 12.391 46.419 4.522 1.00 0.22 O ATOM 3953 CB LYS 45 9.542 44.900 3.995 1.00 0.22 C ATOM 3954 CG LYS 45 8.928 43.517 3.807 1.00 0.22 C ATOM 3955 CD LYS 45 9.948 42.457 3.412 1.00 0.22 C ATOM 3956 CE LYS 45 9.245 41.136 3.196 1.00 0.22 C ATOM 3957 NZ LYS 45 10.206 40.021 2.934 1.00 0.22 N TER 5342 TRP A 238 END