####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name S0953s2TS196_4-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name S0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap S0953s2TS196_4-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 3 - 39 4.84 8.38 LONGEST_CONTINUOUS_SEGMENT: 37 4 - 40 4.94 8.27 LCS_AVERAGE: 82.23 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 20 - 37 1.92 9.39 LCS_AVERAGE: 33.32 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 7 - 18 0.87 11.82 LONGEST_CONTINUOUS_SEGMENT: 12 19 - 30 0.70 8.22 LCS_AVERAGE: 20.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 4 36 3 3 3 6 7 8 10 12 12 14 15 17 17 22 23 27 30 32 34 35 LCS_GDT V 3 V 3 3 7 37 3 4 5 6 7 9 10 13 17 22 23 28 29 35 35 36 36 37 38 38 LCS_GDT Q 4 Q 4 5 7 37 3 4 5 6 7 9 13 13 18 24 26 28 31 35 35 36 36 37 38 38 LCS_GDT G 5 G 5 5 7 37 2 4 5 7 12 15 18 22 25 27 30 33 33 35 35 36 36 37 38 38 LCS_GDT P 6 P 6 5 9 37 3 4 5 5 7 12 17 22 25 27 30 33 33 35 35 36 36 37 38 38 LCS_GDT W 7 W 7 12 17 37 3 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT V 8 V 8 12 17 37 5 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT G 9 G 9 12 17 37 5 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT S 10 S 10 12 17 37 5 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT S 11 S 11 12 17 37 5 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT Y 12 Y 12 12 17 37 5 9 12 14 15 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT V 13 V 13 12 17 37 5 9 12 12 14 16 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT A 14 A 14 12 17 37 5 9 12 12 14 16 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT E 15 E 15 12 17 37 3 9 12 12 14 16 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT T 16 T 16 12 17 37 5 9 12 12 14 16 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT G 17 G 17 12 17 37 3 9 12 12 14 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT Q 18 Q 18 12 17 37 3 4 12 12 13 16 19 22 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT N 19 N 19 12 17 37 8 11 12 14 14 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT W 20 W 20 12 18 37 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT A 21 A 21 12 18 37 8 11 12 12 15 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT S 22 S 22 12 18 37 8 11 12 13 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT L 23 L 23 12 18 37 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT A 24 A 24 12 18 37 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT A 25 A 25 12 18 37 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT N 26 N 26 12 18 37 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT E 27 E 27 12 18 37 6 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT L 28 L 28 12 18 37 6 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT R 29 R 29 12 18 37 6 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT V 30 V 30 12 18 37 6 10 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT T 31 T 31 9 18 37 3 8 10 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT E 32 E 32 6 18 37 3 6 6 10 12 15 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT R 33 R 33 6 18 37 3 8 10 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT P 34 P 34 6 18 37 4 8 9 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 LCS_GDT F 35 F 35 6 18 37 4 6 10 13 16 19 20 23 25 27 30 33 33 35 35 36 36 37 38 38 LCS_GDT W 36 W 36 6 18 37 4 6 10 13 16 19 19 22 25 27 28 33 33 35 35 36 36 37 38 38 LCS_GDT I 37 I 37 6 18 37 4 6 8 13 16 19 20 23 25 27 28 33 33 35 35 36 36 37 38 38 LCS_GDT S 38 S 38 6 9 37 4 5 6 7 12 14 20 22 25 25 28 29 30 33 34 36 36 37 38 38 LCS_GDT S 39 S 39 6 9 37 4 5 6 7 8 10 16 21 23 25 28 29 30 31 31 33 36 37 38 38 LCS_GDT F 40 F 40 6 9 37 4 5 6 7 8 10 12 16 22 25 28 29 30 31 31 33 36 37 38 38 LCS_GDT I 41 I 41 6 9 35 4 5 6 7 8 10 13 18 21 25 27 29 30 30 31 32 32 33 36 36 LCS_GDT G 42 G 42 4 9 34 3 4 4 7 8 9 10 13 16 20 22 26 28 30 31 32 32 32 33 34 LCS_GDT R 43 R 43 4 9 34 3 4 6 7 8 9 10 12 14 17 20 22 25 28 31 32 32 32 33 33 LCS_GDT S 44 S 44 3 9 33 3 3 4 4 8 9 9 12 14 15 17 18 21 23 25 27 28 32 33 33 LCS_GDT K 45 K 45 3 3 14 3 3 3 3 3 3 7 7 8 10 10 11 12 14 16 17 21 21 23 26 LCS_AVERAGE LCS_A: 45.27 ( 20.25 33.32 82.23 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 12 14 16 19 20 23 25 28 30 33 33 35 35 36 36 37 38 38 GDT PERCENT_AT 18.18 25.00 27.27 31.82 36.36 43.18 45.45 52.27 56.82 63.64 68.18 75.00 75.00 79.55 79.55 81.82 81.82 84.09 86.36 86.36 GDT RMS_LOCAL 0.34 0.56 0.70 1.32 1.56 1.92 2.50 2.75 2.96 3.51 3.70 4.00 4.00 4.36 4.36 4.58 4.58 4.91 5.05 5.05 GDT RMS_ALL_AT 8.59 8.36 8.22 9.12 9.52 9.09 8.12 8.18 8.18 9.00 8.84 8.68 8.68 8.68 8.68 8.52 8.52 8.22 8.28 8.28 # Checking swapping # possible swapping detected: E 15 E 15 # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 15.498 0 0.640 0.604 17.009 0.000 0.000 - LGA V 3 V 3 10.725 0 0.119 1.077 11.839 0.000 0.000 8.012 LGA Q 4 Q 4 12.425 0 0.670 1.001 15.734 0.000 0.000 15.734 LGA G 5 G 5 10.343 0 0.033 0.033 10.814 0.000 0.000 - LGA P 6 P 6 8.834 0 0.051 0.410 11.859 0.000 0.000 11.265 LGA W 7 W 7 10.454 0 0.435 1.220 21.875 0.000 0.000 21.875 LGA V 8 V 8 9.002 0 0.110 0.180 10.015 0.000 0.000 8.817 LGA G 9 G 9 7.816 0 0.091 0.091 8.573 0.000 0.000 - LGA S 10 S 10 7.832 0 0.087 0.600 9.519 0.000 0.000 9.072 LGA S 11 S 11 5.107 0 0.014 0.690 6.297 12.273 8.182 5.280 LGA Y 12 Y 12 2.906 0 0.087 1.126 7.860 31.818 12.727 7.860 LGA V 13 V 13 3.433 0 0.064 1.008 7.620 15.455 9.870 7.620 LGA A 14 A 14 4.004 0 0.022 0.023 4.925 7.273 8.000 - LGA E 15 E 15 3.706 0 0.144 1.096 5.752 13.636 7.273 4.892 LGA T 16 T 16 4.598 0 0.147 1.177 6.618 3.182 9.091 2.492 LGA G 17 G 17 6.608 0 0.729 0.729 6.608 0.000 0.000 - LGA Q 18 Q 18 6.326 0 0.052 1.316 14.006 7.273 3.232 13.573 LGA N 19 N 19 2.002 0 0.654 1.514 8.068 36.364 18.864 8.068 LGA W 20 W 20 1.702 0 0.135 1.055 6.140 47.727 38.831 5.053 LGA A 21 A 21 3.252 0 0.028 0.036 4.070 25.000 21.091 - LGA S 22 S 22 2.984 0 0.088 0.153 3.261 30.000 26.061 3.166 LGA L 23 L 23 1.065 0 0.090 0.106 2.199 61.818 60.455 1.545 LGA A 24 A 24 1.698 0 0.016 0.020 2.137 54.545 51.273 - LGA A 25 A 25 2.464 0 0.031 0.035 2.754 38.182 36.000 - LGA N 26 N 26 1.845 0 0.061 0.097 2.716 54.545 46.591 2.716 LGA E 27 E 27 1.239 0 0.065 0.989 3.232 65.455 51.111 3.232 LGA L 28 L 28 1.216 0 0.078 0.137 1.577 65.455 63.636 1.577 LGA R 29 R 29 1.168 0 0.087 1.401 8.113 65.455 38.182 8.113 LGA V 30 V 30 1.397 0 0.256 1.156 3.633 65.909 51.948 3.633 LGA T 31 T 31 1.517 0 0.699 0.668 4.535 45.455 29.610 4.535 LGA E 32 E 32 3.797 0 0.538 1.248 10.906 23.636 10.505 10.906 LGA R 33 R 33 2.665 0 0.096 1.381 12.430 17.727 7.438 12.430 LGA P 34 P 34 3.634 0 0.043 0.344 6.570 10.455 6.753 6.570 LGA F 35 F 35 2.994 0 0.115 1.196 3.782 22.727 23.471 3.359 LGA W 36 W 36 4.012 0 0.656 1.277 14.749 10.000 2.857 14.516 LGA I 37 I 37 3.226 0 0.037 1.016 5.282 10.455 17.500 2.443 LGA S 38 S 38 5.988 0 0.060 0.631 8.299 1.364 0.909 7.508 LGA S 39 S 39 7.307 0 0.167 0.714 10.171 0.000 0.000 7.085 LGA F 40 F 40 7.674 0 0.125 1.079 11.055 0.000 0.000 11.013 LGA I 41 I 41 10.743 0 0.581 0.559 14.089 0.000 0.000 10.392 LGA G 42 G 42 15.183 0 0.147 0.147 17.989 0.000 0.000 - LGA R 43 R 43 15.717 0 0.657 1.360 16.261 0.000 0.000 16.049 LGA S 44 S 44 18.955 0 0.625 0.798 21.818 0.000 0.000 16.924 LGA K 45 K 45 23.204 0 0.193 0.554 25.361 0.000 0.000 22.238 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 7.761 7.885 8.827 19.163 15.033 7.844 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 23 2.75 47.727 45.580 0.807 LGA_LOCAL RMSD: 2.748 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.182 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 7.761 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.938117 * X + 0.197855 * Y + 0.284234 * Z + 17.595936 Y_new = -0.330761 * X + -0.268660 * Y + -0.904665 * Z + 39.461758 Z_new = -0.102630 * X + -0.942696 * Y + 0.317477 * Z + -4.958733 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.802622 0.102811 -1.245950 [DEG: -160.5784 5.8907 -71.3877 ] ZXZ: 0.304421 1.247728 -3.033151 [DEG: 17.4420 71.4896 -173.7867 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: S0953s2TS196_4-D1 REMARK 2: S0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap S0953s2TS196_4-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 23 2.75 45.580 7.76 REMARK ---------------------------------------------------------- MOLECULE S0953s2TS196_4-D1 PFRMAT TS TARGET S0953s2 MODEL 4 PARENT N/A ATOM 20 N ALA 2 -2.136 45.218 11.942 1.00 3.89 N ATOM 21 CA ALA 2 -2.546 44.563 13.177 1.00 3.89 C ATOM 22 C ALA 2 -1.326 44.272 14.035 1.00 3.89 C ATOM 23 O ALA 2 -1.393 44.251 15.269 1.00 3.89 O ATOM 24 CB ALA 2 -3.244 43.260 12.885 1.00 5.83 C ATOM 30 N VAL 3 -0.209 44.060 13.326 1.00 3.89 N ATOM 31 CA VAL 3 1.109 43.720 13.820 1.00 3.89 C ATOM 32 C VAL 3 2.062 44.916 13.706 1.00 3.89 C ATOM 33 O VAL 3 1.781 45.901 13.004 1.00 3.89 O ATOM 34 CB VAL 3 1.705 42.599 12.950 1.00 5.83 C ATOM 35 CG1 VAL 3 0.894 41.339 12.971 1.00 5.83 C ATOM 36 CG2 VAL 3 1.752 43.091 11.521 1.00 5.83 C ATOM 46 N GLN 4 3.177 44.853 14.449 1.00 3.89 N ATOM 47 CA GLN 4 4.192 45.918 14.462 1.00 3.89 C ATOM 48 C GLN 4 4.776 46.150 13.059 1.00 3.68 C ATOM 49 O GLN 4 5.250 47.238 12.736 1.00 3.89 O ATOM 50 CB GLN 4 5.309 45.561 15.436 1.00 5.83 C ATOM 51 CG GLN 4 4.860 45.433 16.883 1.00 5.83 C ATOM 52 CD GLN 4 4.291 44.031 17.203 1.00 5.83 C ATOM 53 OE1 GLN 4 3.624 43.404 16.376 1.00 5.83 O ATOM 54 NE2 GLN 4 4.537 43.555 18.418 1.00 5.83 N ATOM 63 N GLY 5 4.706 45.118 12.226 1.00 3.21 N ATOM 64 CA GLY 5 5.134 45.175 10.842 1.00 2.75 C ATOM 65 C GLY 5 5.142 43.782 10.193 1.00 1.96 C ATOM 66 O GLY 5 5.025 42.762 10.883 1.00 2.06 O ATOM 70 N PRO 6 5.211 43.708 8.850 1.00 1.39 N ATOM 71 CA PRO 6 5.238 42.486 8.057 1.00 0.97 C ATOM 72 C PRO 6 6.334 41.535 8.532 1.00 0.94 C ATOM 73 O PRO 6 6.250 40.330 8.290 1.00 1.04 O ATOM 74 CB PRO 6 5.559 43.023 6.660 1.00 1.46 C ATOM 75 CG PRO 6 4.932 44.400 6.652 1.00 1.46 C ATOM 76 CD PRO 6 5.187 44.945 8.040 1.00 1.46 C ATOM 84 N TRP 7 7.358 42.071 9.202 1.00 1.03 N ATOM 85 CA TRP 7 8.435 41.285 9.791 1.00 1.12 C ATOM 86 C TRP 7 7.955 40.352 10.906 1.00 0.99 C ATOM 87 O TRP 7 8.542 39.285 11.142 1.00 1.02 O ATOM 88 CB TRP 7 9.518 42.221 10.334 1.00 1.68 C ATOM 89 CG TRP 7 9.066 43.104 11.474 1.00 1.68 C ATOM 90 CD1 TRP 7 8.627 44.389 11.372 1.00 1.68 C ATOM 91 CD2 TRP 7 9.083 42.801 12.890 1.00 1.68 C ATOM 92 NE1 TRP 7 8.396 44.915 12.622 1.00 1.68 N ATOM 93 CE2 TRP 7 8.655 43.950 13.561 1.00 1.68 C ATOM 94 CE3 TRP 7 9.451 41.670 13.634 1.00 1.68 C ATOM 95 CZ2 TRP 7 8.538 43.991 14.939 1.00 1.68 C ATOM 96 CZ3 TRP 7 9.329 41.710 15.015 1.00 1.68 C ATOM 97 CH2 TRP 7 8.878 42.844 15.651 1.00 1.68 C ATOM 108 N VAL 8 6.837 40.717 11.549 1.00 0.94 N ATOM 109 CA VAL 8 6.261 39.915 12.617 1.00 0.88 C ATOM 110 C VAL 8 5.654 38.724 11.953 1.00 0.85 C ATOM 111 O VAL 8 5.816 37.570 12.369 1.00 0.90 O ATOM 112 CB VAL 8 5.121 40.671 13.316 1.00 1.32 C ATOM 113 CG1 VAL 8 4.471 39.798 14.357 1.00 1.32 C ATOM 114 CG2 VAL 8 5.623 41.918 13.903 1.00 1.32 C ATOM 124 N GLY 9 4.992 39.046 10.855 1.00 0.84 N ATOM 125 CA GLY 9 4.305 38.080 10.032 1.00 0.92 C ATOM 126 C GLY 9 5.259 37.081 9.414 1.00 0.91 C ATOM 127 O GLY 9 5.004 35.873 9.413 1.00 0.88 O ATOM 131 N SER 10 6.343 37.610 8.848 1.00 1.01 N ATOM 132 CA SER 10 7.331 36.825 8.135 1.00 1.12 C ATOM 133 C SER 10 7.943 35.776 9.051 1.00 1.05 C ATOM 134 O SER 10 8.141 34.629 8.649 1.00 1.09 O ATOM 135 CB SER 10 8.425 37.745 7.629 1.00 1.68 C ATOM 136 OG SER 10 7.942 38.599 6.621 1.00 1.68 O ATOM 142 N SER 11 8.314 36.177 10.270 1.00 1.01 N ATOM 143 CA SER 11 8.891 35.227 11.197 1.00 1.01 C ATOM 144 C SER 11 7.895 34.103 11.488 1.00 0.88 C ATOM 145 O SER 11 8.256 32.919 11.531 1.00 0.93 O ATOM 146 CB SER 11 9.240 35.933 12.494 1.00 1.52 C ATOM 147 OG SER 11 10.186 36.950 12.280 1.00 1.52 O ATOM 153 N TYR 12 6.615 34.467 11.628 1.00 0.77 N ATOM 154 CA TYR 12 5.611 33.533 12.109 1.00 0.69 C ATOM 155 C TYR 12 5.353 32.440 11.101 1.00 0.69 C ATOM 156 O TYR 12 5.347 31.250 11.445 1.00 0.70 O ATOM 157 CB TYR 12 4.300 34.263 12.395 1.00 1.03 C ATOM 158 CG TYR 12 3.215 33.392 12.968 1.00 1.03 C ATOM 159 CD1 TYR 12 3.237 33.081 14.308 1.00 1.03 C ATOM 160 CD2 TYR 12 2.169 32.961 12.179 1.00 1.03 C ATOM 161 CE1 TYR 12 2.238 32.348 14.859 1.00 1.03 C ATOM 162 CE2 TYR 12 1.161 32.219 12.747 1.00 1.03 C ATOM 163 CZ TYR 12 1.202 31.897 14.082 1.00 1.03 C ATOM 164 OH TYR 12 0.219 31.097 14.639 1.00 1.03 O ATOM 174 N VAL 13 5.212 32.845 9.846 1.00 0.81 N ATOM 175 CA VAL 13 5.029 31.918 8.746 1.00 0.92 C ATOM 176 C VAL 13 6.258 31.056 8.489 1.00 1.02 C ATOM 177 O VAL 13 6.132 29.878 8.151 1.00 1.06 O ATOM 178 CB VAL 13 4.588 32.702 7.506 1.00 1.38 C ATOM 179 CG1 VAL 13 5.659 33.521 7.009 1.00 1.38 C ATOM 180 CG2 VAL 13 4.100 31.763 6.426 1.00 1.38 C ATOM 190 N ALA 14 7.453 31.646 8.543 1.00 1.09 N ATOM 191 CA ALA 14 8.672 30.895 8.271 1.00 1.25 C ATOM 192 C ALA 14 8.667 29.552 8.998 1.00 1.21 C ATOM 193 O ALA 14 9.139 28.550 8.451 1.00 1.35 O ATOM 194 CB ALA 14 9.886 31.704 8.693 1.00 1.88 C ATOM 200 N GLU 15 8.098 29.517 10.207 1.00 1.07 N ATOM 201 CA GLU 15 8.170 28.308 11.029 1.00 1.11 C ATOM 202 C GLU 15 6.789 27.673 11.289 1.00 1.06 C ATOM 203 O GLU 15 6.705 26.552 11.801 1.00 1.17 O ATOM 204 CB GLU 15 8.860 28.599 12.366 1.00 1.67 C ATOM 205 CG GLU 15 10.312 29.066 12.249 1.00 1.67 C ATOM 206 CD GLU 15 10.995 29.266 13.596 1.00 1.67 C ATOM 207 OE1 GLU 15 10.328 29.194 14.605 1.00 1.67 O ATOM 208 OE2 GLU 15 12.179 29.522 13.606 1.00 1.67 O ATOM 215 N THR 16 5.722 28.360 10.879 1.00 0.93 N ATOM 216 CA THR 16 4.341 27.908 11.076 1.00 0.94 C ATOM 217 C THR 16 3.669 27.290 9.853 1.00 0.99 C ATOM 218 O THR 16 3.029 26.243 9.962 1.00 1.07 O ATOM 219 CB THR 16 3.454 29.074 11.543 1.00 1.41 C ATOM 220 OG1 THR 16 3.936 29.550 12.793 1.00 1.41 O ATOM 221 CG2 THR 16 2.012 28.616 11.690 1.00 1.41 C ATOM 229 N GLY 17 3.743 27.964 8.709 1.00 1.02 N ATOM 230 CA GLY 17 2.931 27.571 7.576 1.00 1.16 C ATOM 231 C GLY 17 1.727 28.497 7.532 1.00 1.19 C ATOM 232 O GLY 17 1.638 29.426 8.343 1.00 1.25 O ATOM 236 N GLN 18 0.835 28.275 6.575 1.00 1.43 N ATOM 237 CA GLN 18 -0.416 29.023 6.541 1.00 1.74 C ATOM 238 C GLN 18 -1.291 28.657 7.735 1.00 1.55 C ATOM 239 O GLN 18 -1.227 27.544 8.262 1.00 2.07 O ATOM 240 CB GLN 18 -1.154 28.771 5.224 1.00 2.61 C ATOM 241 CG GLN 18 -0.334 29.137 3.993 1.00 2.61 C ATOM 242 CD GLN 18 -1.078 28.942 2.661 1.00 2.61 C ATOM 243 OE1 GLN 18 -0.442 29.010 1.591 1.00 2.61 O ATOM 244 NE2 GLN 18 -2.382 28.701 2.713 1.00 2.61 N ATOM 253 N ASN 19 -2.151 29.592 8.120 1.00 1.25 N ATOM 254 CA ASN 19 -2.731 29.632 9.453 1.00 1.15 C ATOM 255 C ASN 19 -3.925 30.561 9.466 1.00 1.39 C ATOM 256 O ASN 19 -4.054 31.389 8.571 1.00 1.75 O ATOM 257 CB ASN 19 -1.677 30.151 10.397 1.00 1.72 C ATOM 258 CG ASN 19 -1.317 31.588 10.030 1.00 1.72 C ATOM 259 OD1 ASN 19 -1.952 32.533 10.501 1.00 1.72 O ATOM 260 ND2 ASN 19 -0.296 31.774 9.216 1.00 1.72 N ATOM 267 N TRP 20 -4.740 30.514 10.495 1.00 1.74 N ATOM 268 CA TRP 20 -5.948 31.334 10.475 1.00 2.03 C ATOM 269 C TRP 20 -5.652 32.636 11.187 1.00 1.56 C ATOM 270 O TRP 20 -4.702 32.716 11.969 1.00 1.26 O ATOM 271 CB TRP 20 -7.127 30.653 11.134 1.00 3.04 C ATOM 272 CG TRP 20 -7.695 29.571 10.324 1.00 3.04 C ATOM 273 CD1 TRP 20 -7.763 29.504 8.964 1.00 3.04 C ATOM 274 CD2 TRP 20 -8.360 28.402 10.820 1.00 3.04 C ATOM 275 NE1 TRP 20 -8.413 28.363 8.586 1.00 3.04 N ATOM 276 CE2 TRP 20 -8.773 27.668 9.711 1.00 3.04 C ATOM 277 CE3 TRP 20 -8.640 27.925 12.106 1.00 3.04 C ATOM 278 CZ2 TRP 20 -9.406 26.446 9.842 1.00 3.04 C ATOM 279 CZ3 TRP 20 -9.277 26.706 12.239 1.00 3.04 C ATOM 280 CH2 TRP 20 -9.638 25.977 11.134 1.00 3.04 C ATOM 291 N ALA 21 -6.514 33.623 11.002 1.00 1.59 N ATOM 292 CA ALA 21 -6.237 34.972 11.467 1.00 1.27 C ATOM 293 C ALA 21 -6.359 35.129 12.979 1.00 1.08 C ATOM 294 O ALA 21 -5.571 35.851 13.601 1.00 0.92 O ATOM 295 CB ALA 21 -7.194 35.921 10.779 1.00 1.91 C ATOM 301 N SER 22 -7.389 34.520 13.570 1.00 1.34 N ATOM 302 CA SER 22 -7.548 34.603 15.016 1.00 1.41 C ATOM 303 C SER 22 -6.480 33.779 15.752 1.00 1.25 C ATOM 304 O SER 22 -6.142 34.045 16.910 1.00 1.45 O ATOM 305 CB SER 22 -8.946 34.151 15.401 1.00 2.11 C ATOM 306 OG SER 22 -9.093 32.760 15.281 1.00 2.11 O ATOM 312 N LEU 23 -5.917 32.772 15.082 1.00 1.11 N ATOM 313 CA LEU 23 -4.910 31.963 15.738 1.00 1.02 C ATOM 314 C LEU 23 -3.678 32.818 15.849 1.00 0.91 C ATOM 315 O LEU 23 -3.058 32.898 16.916 1.00 0.88 O ATOM 316 CB LEU 23 -4.615 30.688 14.938 1.00 1.53 C ATOM 317 CG LEU 23 -5.778 29.698 14.808 1.00 1.53 C ATOM 318 CD1 LEU 23 -5.383 28.579 13.839 1.00 1.53 C ATOM 319 CD2 LEU 23 -6.109 29.129 16.165 1.00 1.53 C ATOM 331 N ALA 24 -3.283 33.391 14.708 1.00 1.02 N ATOM 332 CA ALA 24 -2.060 34.164 14.650 1.00 1.07 C ATOM 333 C ALA 24 -2.174 35.379 15.543 1.00 0.88 C ATOM 334 O ALA 24 -1.229 35.749 16.232 1.00 0.84 O ATOM 335 CB ALA 24 -1.771 34.597 13.234 1.00 1.60 C ATOM 341 N ALA 25 -3.375 35.977 15.598 1.00 0.87 N ATOM 342 CA ALA 25 -3.501 37.193 16.385 1.00 0.84 C ATOM 343 C ALA 25 -3.306 36.908 17.856 1.00 0.82 C ATOM 344 O ALA 25 -2.653 37.672 18.583 1.00 0.92 O ATOM 345 CB ALA 25 -4.854 37.842 16.187 1.00 1.26 C ATOM 351 N ASN 26 -3.802 35.770 18.320 1.00 0.83 N ATOM 352 CA ASN 26 -3.601 35.473 19.717 1.00 0.96 C ATOM 353 C ASN 26 -2.143 35.104 20.003 1.00 0.97 C ATOM 354 O ASN 26 -1.531 35.675 20.910 1.00 1.16 O ATOM 355 CB ASN 26 -4.553 34.372 20.146 1.00 1.44 C ATOM 356 CG ASN 26 -5.970 34.878 20.302 1.00 1.44 C ATOM 357 OD1 ASN 26 -6.210 36.086 20.431 1.00 1.44 O ATOM 358 ND2 ASN 26 -6.911 33.970 20.319 1.00 1.44 N ATOM 365 N GLU 27 -1.557 34.213 19.202 1.00 0.90 N ATOM 366 CA GLU 27 -0.184 33.780 19.463 1.00 1.04 C ATOM 367 C GLU 27 0.824 34.937 19.393 1.00 1.07 C ATOM 368 O GLU 27 1.762 35.012 20.191 1.00 1.26 O ATOM 369 CB GLU 27 0.226 32.634 18.531 1.00 1.56 C ATOM 370 CG GLU 27 1.560 31.981 18.915 1.00 1.56 C ATOM 371 CD GLU 27 1.881 30.720 18.143 1.00 1.56 C ATOM 372 OE1 GLU 27 1.085 30.316 17.319 1.00 1.56 O ATOM 373 OE2 GLU 27 2.921 30.162 18.382 1.00 1.56 O ATOM 380 N LEU 28 0.598 35.869 18.469 1.00 0.92 N ATOM 381 CA LEU 28 1.478 37.012 18.267 1.00 0.94 C ATOM 382 C LEU 28 1.172 38.199 19.175 1.00 1.04 C ATOM 383 O LEU 28 1.938 39.163 19.203 1.00 1.17 O ATOM 384 CB LEU 28 1.387 37.480 16.812 1.00 1.41 C ATOM 385 CG LEU 28 1.912 36.540 15.769 1.00 1.41 C ATOM 386 CD1 LEU 28 1.523 37.052 14.370 1.00 1.41 C ATOM 387 CD2 LEU 28 3.416 36.492 15.938 1.00 1.41 C ATOM 399 N ARG 29 0.045 38.152 19.901 1.00 1.06 N ATOM 400 CA ARG 29 -0.349 39.215 20.817 1.00 1.26 C ATOM 401 C ARG 29 -0.631 40.529 20.071 1.00 1.29 C ATOM 402 O ARG 29 -0.149 41.597 20.458 1.00 1.49 O ATOM 403 CB ARG 29 0.718 39.422 21.893 1.00 1.89 C ATOM 404 CG ARG 29 0.619 38.468 23.087 1.00 1.89 C ATOM 405 CD ARG 29 1.225 37.108 22.801 1.00 1.89 C ATOM 406 NE ARG 29 1.244 36.270 24.005 1.00 1.89 N ATOM 407 CZ ARG 29 1.572 34.949 24.068 1.00 1.89 C ATOM 408 NH1 ARG 29 1.871 34.252 22.989 1.00 1.89 N ATOM 409 NH2 ARG 29 1.578 34.345 25.245 1.00 1.89 N ATOM 423 N VAL 30 -1.462 40.436 19.022 1.00 1.13 N ATOM 424 CA VAL 30 -1.761 41.546 18.110 1.00 1.21 C ATOM 425 C VAL 30 -3.267 41.666 17.871 1.00 1.17 C ATOM 426 O VAL 30 -4.046 40.887 18.429 1.00 1.31 O ATOM 427 CB VAL 30 -0.992 41.360 16.795 1.00 1.81 C ATOM 428 CG1 VAL 30 0.515 41.370 17.091 1.00 1.81 C ATOM 429 CG2 VAL 30 -1.418 40.110 16.178 1.00 1.81 C ATOM 439 N THR 31 -3.689 42.552 16.972 1.00 1.42 N ATOM 440 CA THR 31 -5.127 42.790 16.831 1.00 1.56 C ATOM 441 C THR 31 -5.653 41.955 15.677 1.00 1.55 C ATOM 442 O THR 31 -4.900 41.231 15.031 1.00 2.11 O ATOM 443 CB THR 31 -5.509 44.254 16.527 1.00 2.34 C ATOM 444 OG1 THR 31 -5.152 44.576 15.191 1.00 2.34 O ATOM 445 CG2 THR 31 -4.741 45.173 17.455 1.00 2.34 C ATOM 453 N GLU 32 -6.945 42.086 15.408 1.00 1.51 N ATOM 454 CA GLU 32 -7.543 41.425 14.262 1.00 1.92 C ATOM 455 C GLU 32 -7.776 42.373 13.072 1.00 1.73 C ATOM 456 O GLU 32 -8.684 42.147 12.271 1.00 2.25 O ATOM 457 CB GLU 32 -8.858 40.761 14.656 1.00 2.88 C ATOM 458 CG GLU 32 -8.730 39.723 15.754 1.00 2.88 C ATOM 459 CD GLU 32 -10.055 39.108 16.097 1.00 2.88 C ATOM 460 OE1 GLU 32 -10.984 39.840 16.373 1.00 2.88 O ATOM 461 OE2 GLU 32 -10.137 37.904 16.138 1.00 2.88 O ATOM 468 N ARG 33 -6.892 43.356 12.855 1.00 1.55 N ATOM 469 CA ARG 33 -7.201 44.325 11.806 1.00 1.59 C ATOM 470 C ARG 33 -6.081 45.323 11.471 1.00 1.85 C ATOM 471 O ARG 33 -5.670 46.106 12.333 1.00 2.26 O ATOM 472 CB ARG 33 -8.448 45.119 12.192 1.00 2.39 C ATOM 473 CG ARG 33 -8.832 46.244 11.233 1.00 2.39 C ATOM 474 CD ARG 33 -10.183 46.795 11.536 1.00 2.39 C ATOM 475 NE ARG 33 -10.122 47.959 12.408 1.00 2.39 N ATOM 476 CZ ARG 33 -11.198 48.573 12.945 1.00 2.39 C ATOM 477 NH1 ARG 33 -12.402 48.317 12.484 1.00 2.39 N ATOM 478 NH2 ARG 33 -11.040 49.460 13.915 1.00 2.39 N ATOM 492 N PRO 34 -5.629 45.355 10.198 1.00 2.30 N ATOM 493 CA PRO 34 -5.772 44.363 9.138 1.00 2.71 C ATOM 494 C PRO 34 -4.812 43.204 9.387 1.00 2.28 C ATOM 495 O PRO 34 -3.935 43.287 10.254 1.00 3.08 O ATOM 496 CB PRO 34 -5.400 45.161 7.882 1.00 4.06 C ATOM 497 CG PRO 34 -4.506 46.252 8.380 1.00 4.06 C ATOM 498 CD PRO 34 -5.039 46.604 9.763 1.00 4.06 C ATOM 506 N PHE 35 -4.888 42.166 8.566 1.00 1.50 N ATOM 507 CA PHE 35 -4.106 40.978 8.880 1.00 1.77 C ATOM 508 C PHE 35 -2.886 40.809 8.007 1.00 1.42 C ATOM 509 O PHE 35 -2.956 40.870 6.776 1.00 1.39 O ATOM 510 CB PHE 35 -4.927 39.696 8.756 1.00 2.66 C ATOM 511 CG PHE 35 -5.973 39.499 9.800 1.00 2.66 C ATOM 512 CD1 PHE 35 -7.296 39.779 9.548 1.00 2.66 C ATOM 513 CD2 PHE 35 -5.636 38.946 11.025 1.00 2.66 C ATOM 514 CE1 PHE 35 -8.274 39.444 10.472 1.00 2.66 C ATOM 515 CE2 PHE 35 -6.624 38.616 11.929 1.00 2.66 C ATOM 516 CZ PHE 35 -7.934 38.880 11.661 1.00 2.66 C ATOM 526 N TRP 36 -1.791 40.433 8.649 1.00 1.50 N ATOM 527 CA TRP 36 -0.432 40.612 8.145 1.00 1.57 C ATOM 528 C TRP 36 -0.176 39.850 6.860 1.00 1.40 C ATOM 529 O TRP 36 0.755 40.160 6.118 1.00 1.48 O ATOM 530 CB TRP 36 0.555 40.175 9.196 1.00 2.35 C ATOM 531 CG TRP 36 0.359 38.738 9.672 1.00 2.35 C ATOM 532 CD1 TRP 36 -0.415 38.348 10.725 1.00 2.35 C ATOM 533 CD2 TRP 36 0.889 37.513 9.100 1.00 2.35 C ATOM 534 NE1 TRP 36 -0.414 36.989 10.837 1.00 2.35 N ATOM 535 CE2 TRP 36 0.372 36.459 9.850 1.00 2.35 C ATOM 536 CE3 TRP 36 1.747 37.231 8.020 1.00 2.35 C ATOM 537 CZ2 TRP 36 0.654 35.143 9.545 1.00 2.35 C ATOM 538 CZ3 TRP 36 2.032 35.915 7.719 1.00 2.35 C ATOM 539 CH2 TRP 36 1.487 34.899 8.463 1.00 2.35 C ATOM 550 N ILE 37 -0.959 38.805 6.660 1.00 1.31 N ATOM 551 CA ILE 37 -0.739 37.779 5.672 1.00 1.27 C ATOM 552 C ILE 37 -0.540 38.372 4.296 1.00 1.15 C ATOM 553 O ILE 37 0.192 37.812 3.484 1.00 1.12 O ATOM 554 CB ILE 37 -1.899 36.792 5.680 1.00 1.91 C ATOM 555 CG1 ILE 37 -1.893 36.119 6.999 1.00 1.91 C ATOM 556 CG2 ILE 37 -1.747 35.800 4.580 1.00 1.91 C ATOM 557 CD1 ILE 37 -3.171 35.661 7.474 1.00 1.91 C ATOM 569 N SER 38 -1.171 39.508 4.005 1.00 1.17 N ATOM 570 CA SER 38 -1.112 40.020 2.646 1.00 1.20 C ATOM 571 C SER 38 0.294 40.532 2.333 1.00 1.13 C ATOM 572 O SER 38 0.745 40.472 1.182 1.00 1.23 O ATOM 573 CB SER 38 -2.121 41.136 2.457 1.00 1.80 C ATOM 574 OG SER 38 -3.438 40.664 2.597 1.00 1.80 O ATOM 580 N SER 39 0.995 41.027 3.361 1.00 1.11 N ATOM 581 CA SER 39 2.239 41.762 3.160 1.00 1.24 C ATOM 582 C SER 39 3.407 40.804 2.949 1.00 1.16 C ATOM 583 O SER 39 4.255 41.031 2.079 1.00 1.36 O ATOM 584 CB SER 39 2.516 42.670 4.346 1.00 1.86 C ATOM 585 OG SER 39 1.649 43.770 4.349 1.00 1.86 O ATOM 591 N PHE 40 3.409 39.710 3.712 1.00 1.00 N ATOM 592 CA PHE 40 4.339 38.622 3.487 1.00 0.96 C ATOM 593 C PHE 40 4.320 38.192 2.043 1.00 0.95 C ATOM 594 O PHE 40 5.366 38.130 1.391 1.00 0.98 O ATOM 595 CB PHE 40 4.044 37.436 4.410 1.00 1.44 C ATOM 596 CG PHE 40 4.924 36.269 4.145 1.00 1.44 C ATOM 597 CD1 PHE 40 6.257 36.281 4.517 1.00 1.44 C ATOM 598 CD2 PHE 40 4.425 35.157 3.480 1.00 1.44 C ATOM 599 CE1 PHE 40 7.090 35.222 4.197 1.00 1.44 C ATOM 600 CE2 PHE 40 5.245 34.097 3.162 1.00 1.44 C ATOM 601 CZ PHE 40 6.582 34.125 3.523 1.00 1.44 C ATOM 611 N ILE 41 3.135 37.893 1.526 1.00 1.00 N ATOM 612 CA ILE 41 3.041 37.341 0.187 1.00 1.09 C ATOM 613 C ILE 41 3.492 38.358 -0.847 1.00 1.17 C ATOM 614 O ILE 41 4.284 38.031 -1.729 1.00 1.23 O ATOM 615 CB ILE 41 1.609 36.886 -0.112 1.00 1.64 C ATOM 616 CG1 ILE 41 1.238 35.717 0.780 1.00 1.64 C ATOM 617 CG2 ILE 41 1.442 36.525 -1.570 1.00 1.64 C ATOM 618 CD1 ILE 41 -0.238 35.469 0.817 1.00 1.64 C ATOM 630 N GLY 42 3.115 39.627 -0.697 1.00 1.22 N ATOM 631 CA GLY 42 3.480 40.615 -1.708 1.00 1.39 C ATOM 632 C GLY 42 4.998 40.811 -1.822 1.00 1.47 C ATOM 633 O GLY 42 5.511 41.083 -2.914 1.00 1.73 O ATOM 637 N ARG 43 5.724 40.609 -0.714 1.00 1.38 N ATOM 638 CA ARG 43 7.166 40.408 -0.764 1.00 1.53 C ATOM 639 C ARG 43 7.630 38.965 -1.068 1.00 1.53 C ATOM 640 O ARG 43 8.831 38.684 -0.988 1.00 1.62 O ATOM 641 CB ARG 43 7.787 40.854 0.550 1.00 2.29 C ATOM 642 CG ARG 43 7.554 42.323 0.884 1.00 2.29 C ATOM 643 CD ARG 43 7.969 42.666 2.271 1.00 2.29 C ATOM 644 NE ARG 43 7.608 44.039 2.615 1.00 2.29 N ATOM 645 CZ ARG 43 8.048 44.707 3.701 1.00 2.29 C ATOM 646 NH1 ARG 43 8.757 44.089 4.618 1.00 2.29 N ATOM 647 NH2 ARG 43 7.719 45.978 3.868 1.00 2.29 N ATOM 661 N SER 44 6.722 38.080 -1.514 1.00 1.51 N ATOM 662 CA SER 44 7.127 36.780 -2.067 1.00 1.57 C ATOM 663 C SER 44 6.069 35.973 -2.836 1.00 1.20 C ATOM 664 O SER 44 6.245 34.767 -3.034 1.00 1.33 O ATOM 665 CB SER 44 7.641 35.910 -0.941 1.00 2.35 C ATOM 666 OG SER 44 6.742 35.918 0.124 1.00 2.35 O ATOM 672 N LYS 45 5.018 36.620 -3.340 1.00 1.12 N ATOM 673 CA LYS 45 4.001 35.920 -4.116 1.00 1.56 C ATOM 674 C LYS 45 2.824 36.826 -4.441 1.00 1.60 C ATOM 675 O LYS 45 2.951 38.047 -4.468 1.00 2.04 O ATOM 676 CB LYS 45 3.517 34.697 -3.333 1.00 2.34 C ATOM 677 CG LYS 45 3.889 33.364 -3.942 1.00 2.34 C ATOM 678 CD LYS 45 3.388 32.204 -3.088 1.00 2.34 C ATOM 679 CE LYS 45 2.681 31.160 -3.946 1.00 2.34 C ATOM 680 NZ LYS 45 2.049 30.092 -3.119 1.00 2.34 N TER END