#!/bin/bash

#
# Script to prepare structural TR target template (starting model) from original T0xxxTSxxx_x model
#   and copy sequence template from T0xxx.seq.txt file
#

if [ $# -lt 2 ] 
then
	echo "Usage $0 TargetNum ModelName , e.g.:"
	echo "$0 530 228_1"
	exit 1
fi

echo "REMARK REFINEMENT TARGET TR$1" > TR$1.pdb.txt
cat /data/CASP9/predictions/tarballs_all/T0$1/T0$1TS$2 | grep -v 'PFRMAT\|TARGET\|MODEL\|PARENT' >> TR$1.pdb.txt
#cp -p T0$1.seq.txt TR$1.seq.txt
sed 's/T0/TR/g' T0$1.seq.txt > TR$1.seq.txt