<!--
 
    config file for the CASP - DAS sources

    in case of questions please mail Andreas Prlic ap3@sanger.ac.uk
  -->

<dazzle xmlns="http://www.biojava.org/2000/dazzle">
  <!-- Test reference server -->


  <datasource id="depstructure" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGAStructureSource">
    <string name="name" value="depstructure" />
    <string name="description" value="structures of the CASP 7 targets and models" />
    <string name="version" value="CASP 7" />
    <string name="pdbReader" value="org.biojava.servlets.dazzle.datasource.CASP.LGAStructureSource" />
    <string name="targetPath" value="/casp4das/DATA/targets/" />
    <string name="targetExtension" value=".pdb" />
    <string name="modelPath" value="/casp4das/DATA/dep/" />
    <string name="modelExtension" value=".lga" />
    <string name="filePath" value="unused argument" />

    <!-- the path to the template vs target alignments -->
    <string name="templatePath" value="/casp4das/DATA/templates/" />
    <string name="templateExtension" value=".res" />
  </datasource>

  <datasource id="indepstructure" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGAStructureSource">
    <string name="name" value="indepstructure" />
    <string name="description" value="structures of the CASP 7 targets and models" />
    <string name="version" value="CASP 7" />
    <string name="pdbReader" value="org.biojava.servlets.dazzle.datasource.CASP.LGAStructureSource" />
    <string name="targetPath" value="/casp4das/DATA/targets/" />
    <string name="targetExtension" value=".pdb" />
    <string name="modelPath" value="/casp4das/DATA/indep/" />
    <string name="modelExtension" value=".lga" />
    <string name="filePath" value="XXX" />

    <!-- the path to the template vs target alignments -->
    <string name="templatePath" value="/casp4das/DATA/templates/" />
    <string name="templateExtension" value=".res" />
  </datasource>



   <datasource id="lgaalignmentsindep" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGADataSource">
    <string name="name" value="lga_sequence_independent" />
    <string name="description" value="the lga alignments calculated sequence independent" />
    <string name="version" value="CASP 7" />
    <string name="filePath" value="/casp4das/DATA/indep/" />
    <string name="alignmentType" value="LGA - sequence independent" />
    <string name="fileEnding" value=".lga"/>
    <string name="sortBy" value="LGA_S"/>

    <!-- the path to the template vs target alignments -->
    <string name="templatePath" value="/casp4das/DATA/templates/" />
    <string name="templateExtension" value=".res" />
  </datasource>


  <datasource id="lgaalignmentsdep" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGADataSource">
    <string name="name" value="lga_sequence_dependent" />
    <string name="description" value="the lga alignments calculated sequence dependent" />
    <string name="version" value="CASP 7" />
    <string name="filePath" value="/casp4das/DATA/dep/" />
    <string name="alignmentType" value="LGA - sequence dependent" />
    <string name="fileEnding" value=".lga"/>
    <string name="sortBy" value="GDT_TS"/>

    <!-- target vs template is only available for sequence independent... -->
    <string name="templatePath" value="" />
  </datasource>

  <datasource id="lgaindepfeatures" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGAFeatureSource">
    <string name="name" value="lga_features_independent" />
    <string name="description" value="features of the lga alignments calculated sequence independent" />
    <string name="version" value="CASP 7" />
    <string name="filePath" value="/casp4das/DATA/indep/" />
    <string name="stylesheet" value="lgafeatures.style" />

    <!-- the path to the template vs target alignments -->
    <string name="templatePath" value="/casp4das/DATA/templates/" />
    <string name="templateExtension" value=".res" />
  </datasource>

  <datasource id="lgadepfeatures" jclass="org.biojava.servlets.dazzle.datasource.CASP.LGAFeatureSource">
    <string name="name" value="lga_features_dependent" />
    <string name="description" value="features of the lga alignments calculated sequence dependent" />
    <string name="version" value="CASP 7" />
    <string name="filePath" value="/casp4das/DATA/dep/" />
    <string name="stylesheet" value="lgafeatures.style" />
  </datasource>


</dazzle>
