####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 37 ( 278), selected 37 , name T0643TS420_1-D1 # Molecule2: number of CA atoms 73 ( 591), selected 37 , name T0643-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0643TS420_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 20 - 56 2.98 2.98 LCS_AVERAGE: 50.68 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 26 - 55 1.93 3.60 LCS_AVERAGE: 39.47 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 34 - 54 0.99 4.77 LONGEST_CONTINUOUS_SEGMENT: 21 35 - 55 0.90 5.06 LCS_AVERAGE: 23.21 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 37 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 20 T 20 12 22 37 8 12 14 18 23 26 29 31 32 34 36 37 37 37 37 37 37 37 37 37 LCS_GDT T 21 T 21 12 22 37 8 12 13 16 23 25 27 29 31 33 36 37 37 37 37 37 37 37 37 37 LCS_GDT V 22 V 22 12 22 37 8 12 13 18 23 26 29 31 32 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT R 23 R 23 12 22 37 8 12 14 18 23 27 29 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT N 24 N 24 12 22 37 8 12 14 18 23 27 29 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT A 25 A 25 12 28 37 8 12 14 18 23 27 29 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT L 26 L 26 12 30 37 8 12 14 21 24 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT K 27 K 27 12 30 37 8 12 14 21 24 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT D 28 D 28 12 30 37 7 12 14 18 24 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT L 29 L 29 12 30 37 7 12 13 18 23 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT L 30 L 30 12 30 37 7 12 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT K 31 K 31 12 30 37 7 12 19 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT D 32 D 32 8 30 37 4 4 13 15 24 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT M 33 M 33 10 30 37 4 11 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT N 34 N 34 21 30 37 6 11 19 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT Q 35 Q 35 21 30 37 6 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 36 S 36 21 30 37 6 12 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 37 S 37 21 30 37 6 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT L 38 L 38 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT A 39 A 39 21 30 37 6 11 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT K 40 K 40 21 30 37 4 10 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT E 41 E 41 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT C 42 C 42 21 30 37 9 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT P 43 P 43 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT L 44 L 44 21 30 37 5 15 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 45 S 45 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT Q 46 Q 46 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 47 S 47 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT M 48 M 48 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT I 49 I 49 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 50 S 50 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 51 S 51 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT I 52 I 52 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT V 53 V 53 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT N 54 N 54 21 30 37 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT S 55 S 55 21 30 37 6 14 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 LCS_GDT T 56 T 56 3 28 37 3 4 7 10 17 21 26 29 32 35 36 37 37 37 37 37 37 37 37 37 LCS_AVERAGE LCS_A: 37.79 ( 23.21 39.47 50.68 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 16 20 25 25 27 30 31 33 35 36 37 37 37 37 37 37 37 37 37 GDT PERCENT_AT 17.81 21.92 27.40 34.25 34.25 36.99 41.10 42.47 45.21 47.95 49.32 50.68 50.68 50.68 50.68 50.68 50.68 50.68 50.68 50.68 GDT RMS_LOCAL 0.31 0.59 0.82 1.21 1.21 1.56 1.93 2.09 2.38 2.64 2.81 2.98 2.98 2.98 2.98 2.98 2.98 2.98 2.98 2.98 GDT RMS_ALL_AT 5.30 5.00 4.93 4.41 4.41 3.97 3.60 3.42 3.14 3.08 3.01 2.98 2.98 2.98 2.98 2.98 2.98 2.98 2.98 2.98 # Checking swapping # possible swapping detected: E 41 E 41 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 20 T 20 8.360 0 0.170 0.174 9.606 5.952 4.082 LGA T 21 T 21 9.578 0 0.031 0.964 12.713 3.452 2.041 LGA V 22 V 22 6.739 0 0.059 1.199 8.325 18.333 14.082 LGA R 23 R 23 4.641 0 0.109 1.233 7.045 33.095 25.498 LGA N 24 N 24 5.936 0 0.024 0.166 9.096 25.119 16.131 LGA A 25 A 25 5.326 0 0.025 0.034 6.067 33.214 30.000 LGA L 26 L 26 2.368 0 0.043 1.261 4.472 67.262 60.774 LGA K 27 K 27 2.079 0 0.043 0.753 8.221 66.786 43.122 LGA D 28 D 28 3.427 0 0.046 0.268 5.827 53.571 41.964 LGA L 29 L 29 3.205 0 0.035 1.428 5.490 57.262 49.821 LGA L 30 L 30 1.831 0 0.165 1.342 3.086 69.286 66.190 LGA K 31 K 31 0.485 0 0.487 0.866 9.459 80.714 52.646 LGA D 32 D 32 3.023 0 0.213 0.230 5.788 55.714 41.726 LGA M 33 M 33 0.240 0 0.039 0.768 2.460 92.857 82.024 LGA N 34 N 34 1.939 0 0.103 1.179 3.089 79.286 68.274 LGA Q 35 Q 35 0.886 0 0.067 1.122 3.638 88.214 79.312 LGA S 36 S 36 1.194 0 0.038 0.577 1.568 81.429 78.571 LGA S 37 S 37 1.319 0 0.058 0.693 3.600 81.429 75.079 LGA L 38 L 38 1.009 0 0.040 1.432 4.348 85.952 73.988 LGA A 39 A 39 1.196 0 0.051 0.049 1.411 81.429 81.429 LGA K 40 K 40 1.548 0 0.262 1.227 5.162 71.071 60.899 LGA E 41 E 41 1.327 0 0.071 0.921 3.811 81.548 66.614 LGA C 42 C 42 1.529 0 0.117 0.890 1.964 75.000 74.286 LGA P 43 P 43 2.706 0 0.040 0.136 3.498 57.262 55.170 LGA L 44 L 44 2.819 0 0.119 0.946 4.462 60.952 57.500 LGA S 45 S 45 2.017 0 0.028 0.691 3.551 75.357 66.984 LGA Q 46 Q 46 1.475 0 0.032 0.713 2.878 79.286 71.270 LGA S 47 S 47 1.657 0 0.044 0.047 2.118 79.405 74.524 LGA M 48 M 48 1.067 0 0.041 0.872 5.069 85.952 65.774 LGA I 49 I 49 0.558 0 0.027 0.638 2.354 88.214 86.190 LGA S 50 S 50 1.234 0 0.039 0.578 1.627 83.690 81.508 LGA S 51 S 51 0.714 0 0.061 0.709 2.641 88.214 83.413 LGA I 52 I 52 1.447 0 0.021 0.100 1.972 77.143 75.000 LGA V 53 V 53 2.346 0 0.058 0.118 3.073 61.190 61.633 LGA N 54 N 54 2.809 0 0.671 1.194 5.650 57.262 46.131 LGA S 55 S 55 3.111 0 0.109 0.160 3.726 61.190 55.238 LGA T 56 T 56 5.044 0 0.717 1.388 8.093 23.452 18.435 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 37 148 148 100.00 277 277 100.00 73 SUMMARY(RMSD_GDC): 2.984 2.934 3.501 32.418 28.593 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 37 73 4.0 31 2.09 37.329 39.379 1.413 LGA_LOCAL RMSD: 2.093 Number of atoms: 31 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.417 Number of assigned atoms: 37 Std_ASGN_ATOMS RMSD: 2.984 Standard rmsd on all 37 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.694896 * X + 0.614518 * Y + -0.373479 * Z + 16.745787 Y_new = -0.261921 * X + 0.267399 * Y + 0.927305 * Z + -5.776941 Z_new = 0.669714 * X + 0.742203 * Y + -0.024859 * Z + -7.873691 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.781139 -0.733824 1.604278 [DEG: -159.3475 -42.0450 91.9184 ] ZXZ: -2.758711 1.595658 0.734102 [DEG: -158.0625 91.4245 42.0610 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0643TS420_1-D1 REMARK 2: T0643-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0643TS420_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 37 73 4.0 31 2.09 39.379 2.98 REMARK ---------------------------------------------------------- MOLECULE T0643TS420_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0643 REMARK MODEL 1 REMARK PARENT 2ofy_A ATOM 1 N THR 20 0.448 11.524 17.420 1.00 0.00 N ATOM 2 CA THR 20 -0.403 10.318 17.371 1.00 0.00 C ATOM 3 CB THR 20 -0.310 9.670 16.026 1.00 0.00 C ATOM 4 OG1 THR 20 -0.702 10.581 15.008 1.00 0.00 O ATOM 5 CG2 THR 20 -1.227 8.437 16.015 1.00 0.00 C ATOM 6 C THR 20 0.043 9.340 18.402 1.00 0.00 C ATOM 7 O THR 20 -0.569 9.203 19.461 1.00 0.00 O ATOM 8 N THR 21 1.151 8.638 18.121 1.00 0.00 N ATOM 9 CA THR 21 1.639 7.664 19.051 1.00 0.00 C ATOM 10 CB THR 21 2.864 6.941 18.570 1.00 0.00 C ATOM 11 OG1 THR 21 3.959 7.839 18.466 1.00 0.00 O ATOM 12 CG2 THR 21 2.557 6.321 17.197 1.00 0.00 C ATOM 13 C THR 21 2.011 8.397 20.297 1.00 0.00 C ATOM 14 O THR 21 1.755 7.930 21.405 1.00 0.00 O ATOM 15 N VAL 22 2.612 9.591 20.133 1.00 0.00 N ATOM 16 CA VAL 22 3.044 10.389 21.244 1.00 0.00 C ATOM 17 CB VAL 22 3.686 11.679 20.811 1.00 0.00 C ATOM 18 CG1 VAL 22 4.953 11.351 20.004 1.00 0.00 C ATOM 19 CG2 VAL 22 2.656 12.517 20.032 1.00 0.00 C ATOM 20 C VAL 22 1.830 10.714 22.056 1.00 0.00 C ATOM 21 O VAL 22 1.867 10.707 23.285 1.00 0.00 O ATOM 22 N ARG 23 0.705 10.970 21.365 1.00 0.00 N ATOM 23 CA ARG 23 -0.541 11.317 21.986 1.00 0.00 C ATOM 24 CB ARG 23 -1.683 11.208 20.960 1.00 0.00 C ATOM 25 CG ARG 23 -1.686 12.212 19.807 1.00 0.00 C ATOM 26 CD ARG 23 -2.604 11.762 18.665 1.00 0.00 C ATOM 27 NE ARG 23 -3.467 10.666 19.196 1.00 0.00 N ATOM 28 CZ ARG 23 -4.173 9.860 18.352 1.00 0.00 C ATOM 29 NH1 ARG 23 -4.139 10.083 17.002 1.00 0.00 N ATOM 30 NH2 ARG 23 -4.904 8.819 18.846 1.00 0.00 N ATOM 31 C ARG 23 -0.844 10.228 22.961 1.00 0.00 C ATOM 32 O ARG 23 -1.115 10.464 24.138 1.00 0.00 O ATOM 33 N ASN 24 -0.763 8.981 22.471 1.00 0.00 N ATOM 34 CA ASN 24 -1.095 7.827 23.248 1.00 0.00 C ATOM 35 CB ASN 24 -1.022 6.522 22.439 1.00 0.00 C ATOM 36 CG ASN 24 -2.128 6.534 21.394 1.00 0.00 C ATOM 37 OD1 ASN 24 -2.934 7.459 21.320 1.00 0.00 O ATOM 38 ND2 ASN 24 -2.170 5.459 20.560 1.00 0.00 N ATOM 39 C ASN 24 -0.137 7.674 24.384 1.00 0.00 C ATOM 40 O ASN 24 -0.533 7.316 25.490 1.00 0.00 O ATOM 41 N ALA 25 1.158 7.942 24.145 1.00 0.00 N ATOM 42 CA ALA 25 2.131 7.686 25.167 1.00 0.00 C ATOM 43 CB ALA 25 3.561 8.044 24.725 1.00 0.00 C ATOM 44 C ALA 25 1.821 8.506 26.376 1.00 0.00 C ATOM 45 O ALA 25 1.809 7.989 27.492 1.00 0.00 O ATOM 46 N LEU 26 1.535 9.806 26.194 1.00 0.00 N ATOM 47 CA LEU 26 1.280 10.614 27.349 1.00 0.00 C ATOM 48 CB LEU 26 1.106 12.109 27.029 1.00 0.00 C ATOM 49 CG LEU 26 2.401 12.792 26.553 1.00 0.00 C ATOM 50 CD1 LEU 26 2.185 14.297 26.329 1.00 0.00 C ATOM 51 CD2 LEU 26 3.568 12.500 27.510 1.00 0.00 C ATOM 52 C LEU 26 0.022 10.151 28.006 1.00 0.00 C ATOM 53 O LEU 26 -0.044 10.028 29.228 1.00 0.00 O ATOM 54 N LYS 27 -1.008 9.861 27.195 1.00 0.00 N ATOM 55 CA LYS 27 -2.291 9.504 27.722 1.00 0.00 C ATOM 56 CB LYS 27 -3.320 9.305 26.597 1.00 0.00 C ATOM 57 CG LYS 27 -4.780 9.295 27.054 1.00 0.00 C ATOM 58 CD LYS 27 -5.760 9.501 25.898 1.00 0.00 C ATOM 59 CE LYS 27 -7.225 9.586 26.330 1.00 0.00 C ATOM 60 NZ LYS 27 -7.767 8.229 26.560 1.00 0.00 N ATOM 61 C LYS 27 -2.169 8.229 28.495 1.00 0.00 C ATOM 62 O LYS 27 -2.739 8.081 29.575 1.00 0.00 O ATOM 63 N ASP 28 -1.407 7.262 27.964 1.00 0.00 N ATOM 64 CA ASP 28 -1.291 6.011 28.649 1.00 0.00 C ATOM 65 CB ASP 28 -0.396 5.012 27.900 1.00 0.00 C ATOM 66 CG ASP 28 -0.375 3.710 28.686 1.00 0.00 C ATOM 67 OD1 ASP 28 -1.402 3.395 29.345 1.00 0.00 O ATOM 68 OD2 ASP 28 0.667 3.007 28.624 1.00 0.00 O ATOM 69 C ASP 28 -0.638 6.252 29.968 1.00 0.00 C ATOM 70 O ASP 28 -1.079 5.742 30.996 1.00 0.00 O ATOM 71 N LEU 29 0.432 7.067 29.963 1.00 0.00 N ATOM 72 CA LEU 29 1.203 7.286 31.150 1.00 0.00 C ATOM 73 CB LEU 29 2.452 8.151 30.918 1.00 0.00 C ATOM 74 CG LEU 29 3.262 8.381 32.207 1.00 0.00 C ATOM 75 CD1 LEU 29 3.756 7.056 32.808 1.00 0.00 C ATOM 76 CD2 LEU 29 4.397 9.387 31.977 1.00 0.00 C ATOM 77 C LEU 29 0.400 7.961 32.209 1.00 0.00 C ATOM 78 O LEU 29 0.460 7.556 33.369 1.00 0.00 O ATOM 79 N LEU 30 -0.382 9.000 31.860 1.00 0.00 N ATOM 80 CA LEU 30 -1.028 9.699 32.930 1.00 0.00 C ATOM 81 CB LEU 30 -1.652 11.075 32.583 1.00 0.00 C ATOM 82 CG LEU 30 -3.157 11.127 32.259 1.00 0.00 C ATOM 83 CD1 LEU 30 -3.616 12.575 32.016 1.00 0.00 C ATOM 84 CD2 LEU 30 -3.527 10.215 31.088 1.00 0.00 C ATOM 85 C LEU 30 -2.037 8.811 33.584 1.00 0.00 C ATOM 86 O LEU 30 -2.226 8.882 34.797 1.00 0.00 O ATOM 87 N LYS 31 -2.715 7.949 32.801 1.00 0.00 N ATOM 88 CA LYS 31 -3.677 7.039 33.356 1.00 0.00 C ATOM 89 CB LYS 31 -3.093 5.865 34.182 1.00 0.00 C ATOM 90 CG LYS 31 -2.339 6.234 35.464 1.00 0.00 C ATOM 91 CD LYS 31 -2.200 5.069 36.445 1.00 0.00 C ATOM 92 CE LYS 31 -1.667 5.497 37.815 1.00 0.00 C ATOM 93 NZ LYS 31 -1.630 4.338 38.736 1.00 0.00 N ATOM 94 C LYS 31 -4.681 7.801 34.168 1.00 0.00 C ATOM 95 O LYS 31 -5.255 8.780 33.697 1.00 0.00 O ATOM 96 N ASP 32 -4.921 7.344 35.409 1.00 0.00 N ATOM 97 CA ASP 32 -5.909 7.867 36.308 1.00 0.00 C ATOM 98 CB ASP 32 -5.997 7.058 37.614 1.00 0.00 C ATOM 99 CG ASP 32 -6.513 5.661 37.287 1.00 0.00 C ATOM 100 OD1 ASP 32 -7.529 5.553 36.549 1.00 0.00 O ATOM 101 OD2 ASP 32 -5.897 4.681 37.784 1.00 0.00 O ATOM 102 C ASP 32 -5.609 9.291 36.682 1.00 0.00 C ATOM 103 O ASP 32 -6.540 10.055 36.930 1.00 0.00 O ATOM 104 N MET 33 -4.317 9.685 36.727 1.00 0.00 N ATOM 105 CA MET 33 -3.908 10.994 37.178 1.00 0.00 C ATOM 106 CB MET 33 -2.446 11.344 36.852 1.00 0.00 C ATOM 107 CG MET 33 -1.389 10.660 37.721 1.00 0.00 C ATOM 108 SD MET 33 0.312 11.118 37.260 1.00 0.00 S ATOM 109 CE MET 33 1.100 10.525 38.783 1.00 0.00 C ATOM 110 C MET 33 -4.734 12.070 36.542 1.00 0.00 C ATOM 111 O MET 33 -5.218 11.935 35.419 1.00 0.00 O ATOM 112 N ASN 34 -4.921 13.179 37.293 1.00 0.00 N ATOM 113 CA ASN 34 -5.717 14.292 36.862 1.00 0.00 C ATOM 114 CB ASN 34 -5.984 15.326 37.971 1.00 0.00 C ATOM 115 CG ASN 34 -6.757 14.659 39.099 1.00 0.00 C ATOM 116 OD1 ASN 34 -7.844 14.123 38.897 1.00 0.00 O ATOM 117 ND2 ASN 34 -6.173 14.692 40.328 1.00 0.00 N ATOM 118 C ASN 34 -4.970 15.028 35.797 1.00 0.00 C ATOM 119 O ASN 34 -3.750 15.177 35.855 1.00 0.00 O ATOM 120 N GLN 35 -5.710 15.501 34.779 1.00 0.00 N ATOM 121 CA GLN 35 -5.132 16.264 33.714 1.00 0.00 C ATOM 122 CB GLN 35 -6.154 16.559 32.601 1.00 0.00 C ATOM 123 CG GLN 35 -5.601 17.372 31.430 1.00 0.00 C ATOM 124 CD GLN 35 -6.696 17.449 30.374 1.00 0.00 C ATOM 125 OE1 GLN 35 -7.066 16.443 29.774 1.00 0.00 O ATOM 126 NE2 GLN 35 -7.234 18.678 30.145 1.00 0.00 N ATOM 127 C GLN 35 -4.667 17.561 34.295 1.00 0.00 C ATOM 128 O GLN 35 -3.586 18.053 33.971 1.00 0.00 O ATOM 129 N SER 36 -5.483 18.133 35.200 1.00 0.00 N ATOM 130 CA SER 36 -5.167 19.397 35.798 1.00 0.00 C ATOM 131 CB SER 36 -6.283 19.911 36.727 1.00 0.00 C ATOM 132 OG SER 36 -6.426 19.049 37.845 1.00 0.00 O ATOM 133 C SER 36 -3.926 19.246 36.616 1.00 0.00 C ATOM 134 O SER 36 -3.063 20.125 36.620 1.00 0.00 O ATOM 135 N SER 37 -3.801 18.114 37.327 1.00 0.00 N ATOM 136 CA SER 37 -2.678 17.898 38.188 1.00 0.00 C ATOM 137 CB SER 37 -2.752 16.547 38.918 1.00 0.00 C ATOM 138 OG SER 37 -1.614 16.385 39.750 1.00 0.00 O ATOM 139 C SER 37 -1.424 17.894 37.368 1.00 0.00 C ATOM 140 O SER 37 -0.463 18.589 37.692 1.00 0.00 O ATOM 141 N LEU 38 -1.408 17.126 36.262 1.00 0.00 N ATOM 142 CA LEU 38 -0.197 17.036 35.493 1.00 0.00 C ATOM 143 CB LEU 38 -0.320 16.107 34.271 1.00 0.00 C ATOM 144 CG LEU 38 -0.581 14.633 34.628 1.00 0.00 C ATOM 145 CD1 LEU 38 -0.675 13.770 33.361 1.00 0.00 C ATOM 146 CD2 LEU 38 0.463 14.109 35.628 1.00 0.00 C ATOM 147 C LEU 38 0.156 18.386 34.959 1.00 0.00 C ATOM 148 O LEU 38 1.291 18.844 35.088 1.00 0.00 O ATOM 149 N ALA 39 -0.829 19.074 34.357 1.00 0.00 N ATOM 150 CA ALA 39 -0.554 20.346 33.754 1.00 0.00 C ATOM 151 CB ALA 39 -1.775 20.925 33.020 1.00 0.00 C ATOM 152 C ALA 39 -0.138 21.333 34.801 1.00 0.00 C ATOM 153 O ALA 39 0.815 22.083 34.600 1.00 0.00 O ATOM 154 N LYS 40 -0.843 21.345 35.953 1.00 0.00 N ATOM 155 CA LYS 40 -0.594 22.312 36.988 1.00 0.00 C ATOM 156 CB LYS 40 -1.588 22.202 38.160 1.00 0.00 C ATOM 157 CG LYS 40 -1.613 23.432 39.075 1.00 0.00 C ATOM 158 CD LYS 40 -0.285 23.747 39.768 1.00 0.00 C ATOM 159 CE LYS 40 0.030 22.822 40.946 1.00 0.00 C ATOM 160 NZ LYS 40 1.317 23.212 41.565 1.00 0.00 N ATOM 161 C LYS 40 0.773 22.123 37.553 1.00 0.00 C ATOM 162 O LYS 40 1.497 23.095 37.767 1.00 0.00 O ATOM 163 N GLU 41 1.168 20.867 37.819 1.00 0.00 N ATOM 164 CA GLU 41 2.462 20.645 38.392 1.00 0.00 C ATOM 165 CB GLU 41 2.744 19.161 38.680 1.00 0.00 C ATOM 166 CG GLU 41 4.046 18.932 39.449 1.00 0.00 C ATOM 167 CD GLU 41 3.828 19.331 40.903 1.00 0.00 C ATOM 168 OE1 GLU 41 2.695 19.763 41.244 1.00 0.00 O ATOM 169 OE2 GLU 41 4.801 19.206 41.695 1.00 0.00 O ATOM 170 C GLU 41 3.440 21.124 37.385 1.00 0.00 C ATOM 171 O GLU 41 4.439 21.765 37.712 1.00 0.00 O ATOM 172 N CYS 42 3.154 20.828 36.107 1.00 0.00 N ATOM 173 CA CYS 42 3.980 21.308 35.050 1.00 0.00 C ATOM 174 CB CYS 42 3.751 20.588 33.710 1.00 0.00 C ATOM 175 SG CYS 42 4.235 18.837 33.776 1.00 0.00 S ATOM 176 C CYS 42 3.604 22.743 34.883 1.00 0.00 C ATOM 177 O CYS 42 2.791 23.300 35.612 1.00 0.00 O ATOM 178 N PRO 43 4.275 23.401 34.017 1.00 0.00 N ATOM 179 CA PRO 43 3.955 24.782 33.784 1.00 0.00 C ATOM 180 CD PRO 43 5.692 23.135 33.849 1.00 0.00 C ATOM 181 CB PRO 43 5.260 25.451 33.344 1.00 0.00 C ATOM 182 CG PRO 43 6.193 24.288 32.972 1.00 0.00 C ATOM 183 C PRO 43 2.818 25.053 32.840 1.00 0.00 C ATOM 184 O PRO 43 2.458 26.220 32.702 1.00 0.00 O ATOM 185 N LEU 44 2.244 24.027 32.181 1.00 0.00 N ATOM 186 CA LEU 44 1.333 24.310 31.101 1.00 0.00 C ATOM 187 CB LEU 44 1.564 23.408 29.878 1.00 0.00 C ATOM 188 CG LEU 44 1.647 21.910 30.217 1.00 0.00 C ATOM 189 CD1 LEU 44 0.336 21.391 30.824 1.00 0.00 C ATOM 190 CD2 LEU 44 2.104 21.099 28.995 1.00 0.00 C ATOM 191 C LEU 44 -0.112 24.224 31.487 1.00 0.00 C ATOM 192 O LEU 44 -0.474 23.852 32.599 1.00 0.00 O ATOM 193 N SER 45 -0.982 24.626 30.528 1.00 0.00 N ATOM 194 CA SER 45 -2.407 24.613 30.694 1.00 0.00 C ATOM 195 CB SER 45 -3.166 25.521 29.713 1.00 0.00 C ATOM 196 OG SER 45 -2.827 26.882 29.912 1.00 0.00 O ATOM 197 C SER 45 -2.916 23.244 30.386 1.00 0.00 C ATOM 198 O SER 45 -2.233 22.431 29.765 1.00 0.00 O ATOM 199 N GLN 46 -4.159 22.971 30.829 1.00 0.00 N ATOM 200 CA GLN 46 -4.795 21.722 30.546 1.00 0.00 C ATOM 201 CB GLN 46 -6.167 21.534 31.229 1.00 0.00 C ATOM 202 CG GLN 46 -6.102 21.334 32.746 1.00 0.00 C ATOM 203 CD GLN 46 -6.260 22.681 33.437 1.00 0.00 C ATOM 204 OE1 GLN 46 -6.607 23.682 32.815 1.00 0.00 O ATOM 205 NE2 GLN 46 -6.006 22.702 34.773 1.00 0.00 N ATOM 206 C GLN 46 -5.021 21.671 29.073 1.00 0.00 C ATOM 207 O GLN 46 -4.882 20.623 28.447 1.00 0.00 O ATOM 208 N SER 47 -5.360 22.825 28.470 1.00 0.00 N ATOM 209 CA SER 47 -5.647 22.833 27.069 1.00 0.00 C ATOM 210 CB SER 47 -5.988 24.238 26.546 1.00 0.00 C ATOM 211 OG SER 47 -6.265 24.181 25.154 1.00 0.00 O ATOM 212 C SER 47 -4.438 22.342 26.335 1.00 0.00 C ATOM 213 O SER 47 -4.553 21.589 25.372 1.00 0.00 O ATOM 214 N MET 48 -3.234 22.756 26.776 1.00 0.00 N ATOM 215 CA MET 48 -2.037 22.345 26.099 1.00 0.00 C ATOM 216 CB MET 48 -0.770 22.993 26.684 1.00 0.00 C ATOM 217 CG MET 48 -0.755 24.516 26.538 1.00 0.00 C ATOM 218 SD MET 48 -0.694 25.119 24.823 1.00 0.00 S ATOM 219 CE MET 48 -0.719 26.879 25.272 1.00 0.00 C ATOM 220 C MET 48 -1.873 20.860 26.213 1.00 0.00 C ATOM 221 O MET 48 -1.577 20.183 25.228 1.00 0.00 O ATOM 222 N ILE 49 -2.086 20.302 27.421 1.00 0.00 N ATOM 223 CA ILE 49 -1.885 18.891 27.591 1.00 0.00 C ATOM 224 CB ILE 49 -2.146 18.400 28.987 1.00 0.00 C ATOM 225 CG2 ILE 49 -2.163 16.862 28.942 1.00 0.00 C ATOM 226 CG1 ILE 49 -1.125 18.979 29.978 1.00 0.00 C ATOM 227 CD1 ILE 49 0.319 18.570 29.681 1.00 0.00 C ATOM 228 C ILE 49 -2.854 18.166 26.724 1.00 0.00 C ATOM 229 O ILE 49 -2.488 17.216 26.034 1.00 0.00 O ATOM 230 N SER 50 -4.122 18.614 26.728 1.00 0.00 N ATOM 231 CA SER 50 -5.136 17.931 25.983 1.00 0.00 C ATOM 232 CB SER 50 -6.515 18.603 26.090 1.00 0.00 C ATOM 233 OG SER 50 -6.486 19.886 25.481 1.00 0.00 O ATOM 234 C SER 50 -4.747 17.939 24.546 1.00 0.00 C ATOM 235 O SER 50 -4.904 16.942 23.843 1.00 0.00 O ATOM 236 N SER 51 -4.197 19.069 24.074 1.00 0.00 N ATOM 237 CA SER 51 -3.839 19.158 22.692 1.00 0.00 C ATOM 238 CB SER 51 -3.168 20.497 22.351 1.00 0.00 C ATOM 239 OG SER 51 -4.038 21.577 22.657 1.00 0.00 O ATOM 240 C SER 51 -2.850 18.080 22.389 1.00 0.00 C ATOM 241 O SER 51 -3.013 17.332 21.428 1.00 0.00 O ATOM 242 N ILE 52 -1.792 17.975 23.217 1.00 0.00 N ATOM 243 CA ILE 52 -0.773 16.999 22.960 1.00 0.00 C ATOM 244 CB ILE 52 0.414 17.139 23.867 1.00 0.00 C ATOM 245 CG2 ILE 52 1.337 15.937 23.617 1.00 0.00 C ATOM 246 CG1 ILE 52 1.099 18.501 23.652 1.00 0.00 C ATOM 247 CD1 ILE 52 2.125 18.852 24.731 1.00 0.00 C ATOM 248 C ILE 52 -1.317 15.610 23.129 1.00 0.00 C ATOM 249 O ILE 52 -1.089 14.738 22.291 1.00 0.00 O ATOM 250 N VAL 53 -2.087 15.376 24.209 1.00 0.00 N ATOM 251 CA VAL 53 -2.548 14.051 24.515 1.00 0.00 C ATOM 252 CB VAL 53 -3.440 14.016 25.720 1.00 0.00 C ATOM 253 CG1 VAL 53 -3.974 12.584 25.899 1.00 0.00 C ATOM 254 CG2 VAL 53 -2.645 14.539 26.929 1.00 0.00 C ATOM 255 C VAL 53 -3.330 13.537 23.362 1.00 0.00 C ATOM 256 O VAL 53 -3.119 12.411 22.927 1.00 0.00 O ATOM 257 N ASN 54 -4.277 14.326 22.834 1.00 0.00 N ATOM 258 CA ASN 54 -4.939 13.847 21.662 1.00 0.00 C ATOM 259 CB ASN 54 -6.469 13.932 21.747 1.00 0.00 C ATOM 260 CG ASN 54 -7.048 12.938 20.754 1.00 0.00 C ATOM 261 OD1 ASN 54 -7.094 11.738 21.021 1.00 0.00 O ATOM 262 ND2 ASN 54 -7.524 13.448 19.587 1.00 0.00 N ATOM 263 C ASN 54 -4.473 14.797 20.617 1.00 0.00 C ATOM 264 O ASN 54 -4.960 15.923 20.557 1.00 0.00 O ATOM 265 N SER 55 -3.534 14.351 19.757 1.00 0.00 N ATOM 266 CA SER 55 -2.877 15.252 18.850 1.00 0.00 C ATOM 267 CB SER 55 -1.928 14.573 17.851 1.00 0.00 C ATOM 268 OG SER 55 -1.329 15.562 17.023 1.00 0.00 O ATOM 269 C SER 55 -3.881 16.021 18.061 1.00 0.00 C ATOM 270 O SER 55 -4.720 15.464 17.355 1.00 0.00 O ATOM 271 N THR 56 -3.800 17.359 18.196 1.00 0.00 N ATOM 272 CA THR 56 -4.685 18.250 17.512 1.00 0.00 C ATOM 273 CB THR 56 -5.903 18.604 18.314 1.00 0.00 C ATOM 274 OG1 THR 56 -6.830 19.323 17.514 1.00 0.00 O ATOM 275 CG2 THR 56 -5.473 19.452 19.524 1.00 0.00 C ATOM 276 C THR 56 -3.910 19.545 17.275 1.00 0.00 C ATOM 277 O THR 56 -2.730 19.624 17.710 1.00 0.00 O ATOM 278 OXT THR 56 -4.494 20.478 16.662 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 277 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 33.31 84.7 72 50.0 144 ARMSMC SECONDARY STRUCTURE . . 23.62 94.6 37 51.4 72 ARMSMC SURFACE . . . . . . . . 38.17 79.5 44 44.9 98 ARMSMC BURIED . . . . . . . . 23.74 92.9 28 60.9 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.08 31.4 35 52.2 67 ARMSSC1 RELIABLE SIDE CHAINS . 100.79 30.3 33 51.6 64 ARMSSC1 SECONDARY STRUCTURE . . 84.23 44.4 18 56.2 32 ARMSSC1 SURFACE . . . . . . . . 96.61 34.8 23 47.9 48 ARMSSC1 BURIED . . . . . . . . 106.40 25.0 12 63.2 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.48 50.0 22 45.8 48 ARMSSC2 RELIABLE SIDE CHAINS . 72.34 64.3 14 42.4 33 ARMSSC2 SECONDARY STRUCTURE . . 84.35 36.4 11 45.8 24 ARMSSC2 SURFACE . . . . . . . . 84.50 53.8 13 38.2 34 ARMSSC2 BURIED . . . . . . . . 79.47 44.4 9 64.3 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.03 33.3 9 47.4 19 ARMSSC3 RELIABLE SIDE CHAINS . 69.04 42.9 7 46.7 15 ARMSSC3 SECONDARY STRUCTURE . . 87.92 0.0 4 36.4 11 ARMSSC3 SURFACE . . . . . . . . 75.98 42.9 7 41.2 17 ARMSSC3 BURIED . . . . . . . . 71.64 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.43 50.0 4 44.4 9 ARMSSC4 RELIABLE SIDE CHAINS . 67.43 50.0 4 44.4 9 ARMSSC4 SECONDARY STRUCTURE . . 95.30 0.0 2 28.6 7 ARMSSC4 SURFACE . . . . . . . . 62.47 66.7 3 37.5 8 ARMSSC4 BURIED . . . . . . . . 80.48 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.98 (Number of atoms: 37) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.98 37 50.7 73 CRMSCA CRN = ALL/NP . . . . . 0.0806 CRMSCA SECONDARY STRUCTURE . . 3.13 19 52.8 36 CRMSCA SURFACE . . . . . . . . 2.87 23 46.0 50 CRMSCA BURIED . . . . . . . . 3.16 14 60.9 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.03 185 50.8 364 CRMSMC SECONDARY STRUCTURE . . 3.12 95 53.1 179 CRMSMC SURFACE . . . . . . . . 2.98 115 46.0 250 CRMSMC BURIED . . . . . . . . 3.12 70 61.4 114 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.08 129 43.1 299 CRMSSC RELIABLE SIDE CHAINS . 4.01 105 42.9 245 CRMSSC SECONDARY STRUCTURE . . 4.19 68 44.4 153 CRMSSC SURFACE . . . . . . . . 4.17 81 39.1 207 CRMSSC BURIED . . . . . . . . 3.92 48 52.2 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.52 277 46.9 591 CRMSALL SECONDARY STRUCTURE . . 3.62 144 48.5 297 CRMSALL SURFACE . . . . . . . . 3.55 173 42.5 407 CRMSALL BURIED . . . . . . . . 3.47 104 56.5 184 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.534 1.000 0.500 37 50.7 73 ERRCA SECONDARY STRUCTURE . . 2.727 1.000 0.500 19 52.8 36 ERRCA SURFACE . . . . . . . . 2.446 1.000 0.500 23 46.0 50 ERRCA BURIED . . . . . . . . 2.679 1.000 0.500 14 60.9 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.561 1.000 0.500 185 50.8 364 ERRMC SECONDARY STRUCTURE . . 2.712 1.000 0.500 95 53.1 179 ERRMC SURFACE . . . . . . . . 2.501 1.000 0.500 115 46.0 250 ERRMC BURIED . . . . . . . . 2.661 1.000 0.500 70 61.4 114 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.615 1.000 0.500 129 43.1 299 ERRSC RELIABLE SIDE CHAINS . 3.526 1.000 0.500 105 42.9 245 ERRSC SECONDARY STRUCTURE . . 3.796 1.000 0.500 68 44.4 153 ERRSC SURFACE . . . . . . . . 3.692 1.000 0.500 81 39.1 207 ERRSC BURIED . . . . . . . . 3.484 1.000 0.500 48 52.2 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.003 1.000 0.500 277 46.9 591 ERRALL SECONDARY STRUCTURE . . 3.172 1.000 0.500 144 48.5 297 ERRALL SURFACE . . . . . . . . 3.004 1.000 0.500 173 42.5 407 ERRALL BURIED . . . . . . . . 3.002 1.000 0.500 104 56.5 184 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 6 17 26 33 37 37 73 DISTCA CA (P) 8.22 23.29 35.62 45.21 50.68 73 DISTCA CA (RMS) 0.64 1.29 1.86 2.48 2.98 DISTCA ALL (N) 35 92 155 233 276 277 591 DISTALL ALL (P) 5.92 15.57 26.23 39.42 46.70 591 DISTALL ALL (RMS) 0.72 1.27 1.86 2.71 3.47 DISTALL END of the results output