####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 52 ( 208), selected 52 , name T0643TS358_1-D1 # Molecule2: number of CA atoms 73 ( 591), selected 52 , name T0643-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0643TS358_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 52 26 - 79 4.78 4.78 LCS_AVERAGE: 71.23 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 36 - 56 1.96 7.51 LCS_AVERAGE: 22.34 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 38 - 54 0.91 7.47 LCS_AVERAGE: 16.60 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 52 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 26 L 26 8 10 52 5 7 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT K 27 K 27 8 10 52 5 12 21 24 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT D 28 D 28 8 10 52 5 18 21 24 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT L 29 L 29 8 10 52 5 7 12 25 28 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT L 30 L 30 8 10 52 8 12 15 19 21 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT K 31 K 31 8 10 52 3 7 11 18 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT D 32 D 32 8 10 52 3 5 10 16 27 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT M 33 M 33 8 10 52 3 7 8 10 15 21 28 36 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT N 34 N 34 3 10 52 0 3 6 9 12 15 19 25 39 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT Q 35 Q 35 3 10 52 1 3 6 9 12 15 16 24 32 41 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 36 S 36 3 21 52 1 4 10 24 27 32 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 37 S 37 3 21 52 0 3 4 4 6 10 13 18 39 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT L 38 L 38 17 21 52 5 13 16 19 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT A 39 A 39 17 21 52 5 9 16 24 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT K 40 K 40 17 21 52 5 9 12 19 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT E 41 E 41 17 21 52 5 13 16 19 27 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT C 42 C 42 17 21 52 5 13 16 19 24 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT P 43 P 43 17 21 52 3 12 16 19 20 27 37 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT L 44 L 44 17 21 52 3 6 16 19 20 27 37 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 45 S 45 17 21 52 8 13 16 19 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT Q 46 Q 46 17 21 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 47 S 47 17 21 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT M 48 M 48 17 21 52 9 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT I 49 I 49 17 21 52 9 13 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 50 S 50 17 21 52 9 13 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 51 S 51 17 21 52 9 16 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT I 52 I 52 17 21 52 9 13 16 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT V 53 V 53 17 21 52 9 13 16 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT N 54 N 54 17 21 52 9 13 16 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 55 S 55 15 21 52 3 7 15 19 20 33 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT T 56 T 56 3 21 52 3 3 3 4 8 11 27 36 41 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT Y 57 Y 57 3 20 52 3 3 3 7 13 18 29 37 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT N 60 N 60 15 17 52 3 9 17 18 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT V 61 V 61 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT S 62 S 62 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT A 63 A 63 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT A 64 A 64 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT K 65 K 65 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT C 66 C 66 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT Q 67 Q 67 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT E 68 E 68 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT F 69 F 69 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT G 70 G 70 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT R 71 R 71 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT W 72 W 72 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT Y 73 Y 73 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT K 74 K 74 15 17 52 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 LCS_GDT H 75 H 75 3 16 52 3 3 4 5 10 12 22 29 32 40 43 48 48 48 49 50 50 50 50 51 LCS_GDT F 76 F 76 4 4 52 4 4 4 4 5 9 14 18 21 23 28 42 48 48 49 50 50 50 50 51 LCS_GDT K 77 K 77 4 4 52 4 4 4 5 9 12 17 17 21 23 26 33 42 46 48 50 50 50 50 51 LCS_GDT K 78 K 78 4 4 52 4 4 4 4 5 5 6 14 16 17 20 21 25 31 33 36 45 46 50 51 LCS_GDT T 79 T 79 4 4 52 4 4 4 4 5 6 6 8 10 13 14 18 21 22 28 33 41 41 43 51 LCS_AVERAGE LCS_A: 36.72 ( 16.60 22.34 71.23 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 18 21 25 31 34 39 40 42 44 46 48 48 48 49 50 50 50 50 51 GDT PERCENT_AT 20.55 24.66 28.77 34.25 42.47 46.58 53.42 54.79 57.53 60.27 63.01 65.75 65.75 65.75 67.12 68.49 68.49 68.49 68.49 69.86 GDT RMS_LOCAL 0.22 0.48 0.79 1.34 1.70 1.87 2.26 2.35 2.57 2.82 2.95 3.26 3.26 3.26 3.56 3.86 3.86 3.86 3.86 4.35 GDT RMS_ALL_AT 5.59 5.55 5.53 5.34 5.52 5.59 5.35 5.46 5.33 5.22 5.26 5.13 5.13 5.13 4.99 4.90 4.90 4.90 4.90 4.81 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 26 L 26 2.030 4 0.016 0.016 3.035 69.405 34.702 LGA K 27 K 27 1.760 5 0.080 0.080 1.760 75.000 33.333 LGA D 28 D 28 2.435 4 0.023 0.023 2.435 68.810 34.405 LGA L 29 L 29 3.274 4 0.031 0.031 3.682 52.024 26.012 LGA L 30 L 30 3.497 4 0.223 0.223 4.904 47.143 23.571 LGA K 31 K 31 2.307 5 0.078 0.078 2.865 62.857 27.937 LGA D 32 D 32 4.181 4 0.256 0.256 5.456 37.976 18.988 LGA M 33 M 33 6.524 4 0.685 0.685 7.380 15.714 7.857 LGA N 34 N 34 7.110 4 0.596 0.596 7.110 13.452 6.726 LGA Q 35 Q 35 7.181 5 0.646 0.646 7.370 15.714 6.984 LGA S 36 S 36 4.642 2 0.580 0.580 5.289 37.738 25.159 LGA S 37 S 37 4.743 2 0.020 0.020 4.743 39.048 26.032 LGA L 38 L 38 2.431 4 0.012 0.012 2.431 64.762 32.381 LGA A 39 A 39 1.903 1 0.046 0.046 2.327 66.786 53.429 LGA K 40 K 40 2.662 5 0.275 0.275 4.348 52.262 23.228 LGA E 41 E 41 3.036 5 0.018 0.018 3.601 50.119 22.275 LGA C 42 C 42 3.369 2 0.670 0.670 3.934 48.333 32.222 LGA P 43 P 43 4.526 3 0.259 0.259 4.526 35.714 20.408 LGA L 44 L 44 4.294 4 0.128 0.128 4.339 43.571 21.786 LGA S 45 S 45 2.587 2 0.047 0.047 3.098 65.357 43.571 LGA Q 46 Q 46 1.015 5 0.021 0.021 1.410 83.690 37.196 LGA S 47 S 47 1.672 2 0.017 0.017 1.672 79.405 52.937 LGA M 48 M 48 1.336 4 0.029 0.029 1.336 81.429 40.714 LGA I 49 I 49 1.010 4 0.005 0.005 1.474 83.690 41.845 LGA S 50 S 50 1.346 2 0.008 0.008 1.522 81.548 54.365 LGA S 51 S 51 0.708 2 0.016 0.016 1.218 85.952 57.302 LGA I 52 I 52 1.708 4 0.022 0.022 2.232 72.976 36.488 LGA V 53 V 53 2.295 3 0.073 0.073 2.452 66.786 38.163 LGA N 54 N 54 2.209 4 0.204 0.204 2.634 60.952 30.476 LGA S 55 S 55 3.512 2 0.505 0.505 3.512 51.905 34.603 LGA T 56 T 56 5.623 3 0.110 0.110 7.291 21.429 12.245 LGA Y 57 Y 57 5.810 8 0.025 0.025 5.810 26.310 8.770 LGA N 60 N 60 2.377 4 0.226 0.226 2.377 77.381 38.690 LGA V 61 V 61 1.338 3 0.128 0.128 1.884 79.286 45.306 LGA S 62 S 62 1.215 2 0.023 0.023 1.330 81.429 54.286 LGA A 63 A 63 1.274 1 0.023 0.023 1.490 81.429 65.143 LGA A 64 A 64 1.524 1 0.022 0.022 1.633 75.000 60.000 LGA K 65 K 65 1.510 5 0.032 0.032 1.524 75.000 33.333 LGA C 66 C 66 1.491 2 0.017 0.017 1.572 75.000 50.000 LGA Q 67 Q 67 1.570 5 0.014 0.014 1.709 72.857 32.381 LGA E 68 E 68 1.988 5 0.019 0.019 2.104 70.833 31.481 LGA F 69 F 69 1.930 7 0.026 0.026 1.974 72.857 26.494 LGA G 70 G 70 1.825 0 0.020 0.020 1.867 72.857 72.857 LGA R 71 R 71 1.903 7 0.052 0.052 2.115 70.833 25.758 LGA W 72 W 72 1.931 10 0.043 0.043 2.087 70.833 20.238 LGA Y 73 Y 73 1.960 8 0.238 0.238 2.719 66.905 22.302 LGA K 74 K 74 1.928 5 0.443 0.443 4.768 53.571 23.810 LGA H 75 H 75 8.883 6 0.641 0.641 10.740 5.119 2.048 LGA F 76 F 76 12.279 7 0.597 0.597 13.715 0.000 0.000 LGA K 77 K 77 13.044 5 0.023 0.023 16.331 0.000 0.000 LGA K 78 K 78 17.843 5 0.113 0.113 20.986 0.000 0.000 LGA T 79 T 79 18.909 3 0.121 0.121 21.292 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 52 208 208 100.00 415 208 50.12 73 SUMMARY(RMSD_GDC): 4.783 4.877 4.877 39.165 21.510 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 52 73 4.0 40 2.35 45.548 42.102 1.629 LGA_LOCAL RMSD: 2.355 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.462 Number of assigned atoms: 52 Std_ASGN_ATOMS RMSD: 4.783 Standard rmsd on all 52 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.478523 * X + 0.765674 * Y + -0.429836 * Z + -1.459623 Y_new = 0.848254 * X + -0.276604 * Y + 0.451615 * Z + -6.184766 Z_new = 0.226896 * X + -0.580718 * Y + -0.781847 * Z + 24.265892 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.057172 -0.228889 -2.502747 [DEG: 60.5715 -13.1144 -143.3968 ] ZXZ: -2.380898 2.468419 2.769115 [DEG: -136.4154 141.4300 158.6586 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0643TS358_1-D1 REMARK 2: T0643-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0643TS358_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 52 73 4.0 40 2.35 42.102 4.78 REMARK ---------------------------------------------------------- MOLECULE T0643TS358_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0643 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 CA LEU 26 2.066 11.529 27.090 1.00 99.90 C ATOM 2 N LEU 26 2.241 10.701 25.901 1.00 99.90 N ATOM 3 C LEU 26 0.847 11.096 27.919 1.00 99.90 C ATOM 4 O LEU 26 0.947 11.000 29.118 1.00 99.90 O ATOM 5 CA LYS 27 -1.510 10.459 27.988 1.00 99.90 C ATOM 6 N LYS 27 -0.302 10.881 27.277 1.00 99.90 N ATOM 7 C LYS 27 -1.238 9.232 28.861 1.00 99.90 C ATOM 8 O LYS 27 -1.528 9.248 30.053 1.00 99.90 O ATOM 9 CA ASP 28 -0.457 6.938 28.982 1.00 99.90 C ATOM 10 N ASP 28 -0.636 8.196 28.276 1.00 99.90 N ATOM 11 C ASP 28 0.512 7.071 30.153 1.00 99.90 C ATOM 12 O ASP 28 0.262 6.525 31.238 1.00 99.90 O ATOM 13 CA LEU 29 2.601 7.993 30.990 1.00 99.90 C ATOM 14 N LEU 29 1.601 7.812 29.944 1.00 99.90 N ATOM 15 C LEU 29 2.026 8.834 32.127 1.00 99.90 C ATOM 16 O LEU 29 2.190 8.507 33.296 1.00 99.90 O ATOM 17 CA LEU 30 0.726 10.788 32.752 1.00 99.90 C ATOM 18 N LEU 30 1.362 9.918 31.773 1.00 99.90 N ATOM 19 C LEU 30 -0.296 10.012 33.598 1.00 99.90 C ATOM 20 O LEU 30 -0.301 10.096 34.830 1.00 99.90 O ATOM 21 CA LYS 31 -2.198 8.498 33.616 1.00 99.90 C ATOM 22 N LYS 31 -1.155 9.262 32.932 1.00 99.90 N ATOM 23 C LYS 31 -1.610 7.421 34.499 1.00 99.90 C ATOM 24 O LYS 31 -2.071 7.236 35.613 1.00 99.90 O ATOM 25 CA ASP 32 0.098 5.716 34.787 1.00 99.90 C ATOM 26 N ASP 32 -0.582 6.746 34.013 1.00 99.90 N ATOM 27 C ASP 32 0.647 6.262 36.095 1.00 99.90 C ATOM 28 O ASP 32 0.568 5.595 37.124 1.00 99.90 O ATOM 29 CA MET 33 1.722 8.140 37.228 1.00 99.90 C ATOM 30 N MET 33 1.190 7.479 36.054 1.00 99.90 N ATOM 31 C MET 33 0.631 8.763 38.115 1.00 99.90 C ATOM 32 O MET 33 0.946 9.358 39.127 1.00 99.90 O ATOM 33 CA ASN 34 -1.794 9.170 38.485 1.00 99.90 C ATOM 34 N ASN 34 -0.650 8.631 37.730 1.00 99.90 N ATOM 35 C ASN 34 -1.801 10.703 38.580 1.00 99.90 C ATOM 36 O ASN 34 -2.257 11.288 39.556 1.00 99.90 O ATOM 37 CA GLN 35 -1.242 12.804 37.464 1.00 99.90 C ATOM 38 N GLN 35 -1.310 11.346 37.533 1.00 99.90 N ATOM 39 C GLN 35 -2.388 13.268 36.595 1.00 99.90 C ATOM 40 O GLN 35 -2.501 12.806 35.472 1.00 99.90 O ATOM 41 CA SER 36 -4.320 14.695 36.236 1.00 99.90 C ATOM 42 N SER 36 -3.230 14.177 37.085 1.00 99.90 N ATOM 43 C SER 36 -3.780 15.737 35.276 1.00 99.90 C ATOM 44 O SER 36 -2.681 16.244 35.460 1.00 99.90 O ATOM 45 CA SER 37 -4.165 17.127 33.328 1.00 99.90 C ATOM 46 N SER 37 -4.568 16.083 34.265 1.00 99.90 N ATOM 47 C SER 37 -3.921 18.455 34.037 1.00 99.90 C ATOM 48 O SER 37 -2.925 19.113 33.750 1.00 99.90 O ATOM 49 CA LEU 38 0.607 18.502 35.113 1.00 99.90 C ATOM 50 N LEU 38 -0.555 18.351 35.988 1.00 99.90 N ATOM 51 C LEU 38 0.750 19.929 34.606 1.00 99.90 C ATOM 52 O LEU 38 1.844 20.467 34.592 1.00 99.90 O ATOM 53 CA ALA 39 -0.384 21.913 33.694 1.00 99.90 C ATOM 54 N ALA 39 -0.359 20.535 34.195 1.00 99.90 N ATOM 55 C ALA 39 0.178 22.891 34.749 1.00 99.90 C ATOM 56 O ALA 39 0.985 23.776 34.443 1.00 99.90 O ATOM 57 CA LYS 40 0.190 23.536 37.099 1.00 99.90 C ATOM 58 N LYS 40 -0.269 22.719 35.989 1.00 99.90 N ATOM 59 C LYS 40 1.705 23.378 37.319 1.00 99.90 C ATOM 60 O LYS 40 2.413 24.362 37.461 1.00 99.90 O ATOM 61 CA GLU 41 3.639 21.900 37.493 1.00 99.90 C ATOM 62 N GLU 41 2.209 22.140 37.288 1.00 99.90 N ATOM 63 C GLU 41 4.476 22.546 36.376 1.00 99.90 C ATOM 64 O GLU 41 5.539 23.144 36.630 1.00 99.90 O ATOM 65 CA CYS 42 4.717 22.926 33.985 1.00 99.90 C ATOM 66 N CYS 42 3.982 22.453 35.152 1.00 99.90 N ATOM 67 C CYS 42 4.449 24.391 33.677 1.00 99.90 C ATOM 68 O CYS 42 5.043 24.945 32.751 1.00 99.90 O ATOM 69 CA PRO 43 3.124 26.376 34.192 1.00 99.90 C ATOM 70 N PRO 43 3.556 25.005 34.439 1.00 99.90 N ATOM 71 C PRO 43 2.618 26.602 32.764 1.00 99.90 C ATOM 72 O PRO 43 3.024 27.552 32.090 1.00 99.90 O ATOM 73 CA LEU 44 1.023 25.871 31.055 1.00 99.90 C ATOM 74 N LEU 44 1.760 25.690 32.292 1.00 99.90 N ATOM 75 C LEU 44 -0.463 25.619 31.320 1.00 99.90 C ATOM 76 O LEU 44 -0.853 25.220 32.421 1.00 99.90 O ATOM 77 CA SER 45 -2.715 25.599 30.434 1.00 99.90 C ATOM 78 N SER 45 -1.289 25.825 30.306 1.00 99.90 N ATOM 79 C SER 45 -3.060 24.126 30.318 1.00 99.90 C ATOM 80 O SER 45 -2.352 23.355 29.681 1.00 99.90 O ATOM 81 CA GLN 46 -4.693 22.403 30.751 1.00 99.90 C ATOM 82 N GLN 46 -4.168 23.737 30.934 1.00 99.90 N ATOM 83 C GLN 46 -4.988 22.129 29.282 1.00 99.90 C ATOM 84 O GLN 46 -4.739 21.035 28.812 1.00 99.90 O ATOM 85 CA SER 47 -5.781 23.019 27.124 1.00 99.90 C ATOM 86 N SER 47 -5.500 23.132 28.564 1.00 99.90 N ATOM 87 C SER 47 -4.530 22.616 26.355 1.00 99.90 C ATOM 88 O SER 47 -4.595 21.817 25.441 1.00 99.90 O ATOM 89 CA MET 48 -2.125 22.778 26.094 1.00 99.90 C ATOM 90 N MET 48 -3.385 23.173 26.725 1.00 99.90 N ATOM 91 C MET 48 -1.801 21.301 26.279 1.00 99.90 C ATOM 92 O MET 48 -1.425 20.635 25.327 1.00 99.90 O ATOM 93 CA ILE 49 -1.655 19.405 27.795 1.00 99.90 C ATOM 94 N ILE 49 -1.926 20.807 27.508 1.00 99.90 N ATOM 95 C ILE 49 -2.637 18.533 27.005 1.00 99.90 C ATOM 96 O ILE 49 -2.231 17.568 26.350 1.00 99.90 O ATOM 97 CA SER 50 -4.941 18.107 26.364 1.00 99.90 C ATOM 98 N SER 50 -3.919 18.892 27.038 1.00 99.90 N ATOM 99 C SER 50 -4.712 18.084 24.841 1.00 99.90 C ATOM 100 O SER 50 -4.837 17.040 24.214 1.00 99.90 O ATOM 101 CA SER 51 -4.007 19.366 22.875 1.00 99.90 C ATOM 102 N SER 51 -4.321 19.232 24.282 1.00 99.90 N ATOM 103 C SER 51 -2.888 18.452 22.421 1.00 99.90 C ATOM 104 O SER 51 -2.987 17.847 21.365 1.00 99.90 O ATOM 105 CA ILE 52 -0.745 17.442 22.909 1.00 99.90 C ATOM 106 N ILE 52 -1.833 18.343 23.217 1.00 99.90 N ATOM 107 C ILE 52 -1.259 16.011 22.889 1.00 99.90 C ATOM 108 O ILE 52 -0.969 15.249 21.964 1.00 99.90 O ATOM 109 CA VAL 53 -2.551 14.292 24.033 1.00 99.90 C ATOM 110 N VAL 53 -2.033 15.655 23.907 1.00 99.90 N ATOM 111 C VAL 53 -3.563 13.931 22.946 1.00 99.90 C ATOM 112 O VAL 53 -3.664 12.772 22.563 1.00 99.90 O ATOM 113 CA ASN 54 -5.253 14.669 21.351 1.00 99.90 C ATOM 114 N ASN 54 -4.300 14.906 22.446 1.00 99.90 N ATOM 115 C ASN 54 -4.579 14.848 19.973 1.00 99.90 C ATOM 116 O ASN 54 -5.251 14.837 18.947 1.00 99.90 O ATOM 117 CA SER 55 -2.471 15.095 18.724 1.00 99.90 C ATOM 118 N SER 55 -3.251 15.004 19.960 1.00 99.90 N ATOM 119 C SER 55 -2.897 16.258 17.832 1.00 99.90 C ATOM 120 O SER 55 -2.870 16.157 16.604 1.00 99.90 O ATOM 121 CA THR 56 -3.651 18.530 17.673 1.00 99.90 C ATOM 122 N THR 56 -3.313 17.353 18.437 1.00 99.90 N ATOM 123 C THR 56 -2.367 19.236 17.223 1.00 99.90 C ATOM 124 O THR 56 -2.382 19.982 16.248 1.00 99.90 O ATOM 125 CA TYR 57 0.026 19.630 17.634 1.00 99.90 C ATOM 126 N TYR 57 -1.264 19.002 17.937 1.00 99.90 N ATOM 127 C TYR 57 1.141 19.142 18.551 1.00 99.90 C ATOM 128 O TYR 57 0.900 18.604 19.638 1.00 99.90 O ATOM 129 CA ASN 60 3.519 19.103 18.954 1.00 99.90 C ATOM 130 N ASN 60 2.371 19.394 18.122 1.00 99.90 N ATOM 131 C ASN 60 3.895 20.299 19.835 1.00 99.90 C ATOM 132 O ASN 60 3.750 21.462 19.454 1.00 99.90 O ATOM 133 CA VAL 61 4.953 21.031 21.886 1.00 99.90 C ATOM 134 N VAL 61 4.400 19.998 21.013 1.00 99.90 N ATOM 135 C VAL 61 6.251 21.624 21.329 1.00 99.90 C ATOM 136 O VAL 61 6.918 21.002 20.510 1.00 99.90 O ATOM 137 CA SER 62 7.919 23.384 21.604 1.00 99.90 C ATOM 138 N SER 62 6.604 22.804 21.816 1.00 99.90 N ATOM 139 C SER 62 8.986 22.456 22.181 1.00 99.90 C ATOM 140 O SER 62 8.709 21.600 23.036 1.00 99.90 O ATOM 141 CA ALA 63 11.332 21.905 22.289 1.00 99.90 C ATOM 142 N ALA 63 10.216 22.628 21.717 1.00 99.90 N ATOM 143 C ALA 63 11.411 22.135 23.788 1.00 99.90 C ATOM 144 O ALA 63 11.569 21.185 24.558 1.00 99.90 O ATOM 145 CA ALA 64 11.411 23.679 25.649 1.00 99.90 C ATOM 146 N ALA 64 11.288 23.390 24.214 1.00 99.90 N ATOM 147 C ALA 64 10.345 22.961 26.488 1.00 99.90 C ATOM 148 O ALA 64 10.638 22.429 27.548 1.00 99.90 O ATOM 149 CA LYS 65 8.033 22.291 26.765 1.00 99.90 C ATOM 150 N LYS 65 9.108 22.942 26.017 1.00 99.90 N ATOM 151 C LYS 65 8.226 20.774 26.794 1.00 99.90 C ATOM 152 O LYS 65 8.025 20.137 27.848 1.00 99.90 O ATOM 153 CA CYS 66 8.974 18.776 25.602 1.00 99.90 C ATOM 154 N CYS 66 8.620 20.196 25.660 1.00 99.90 N ATOM 155 C CYS 66 10.033 18.439 26.645 1.00 99.90 C ATOM 156 O CYS 66 9.916 17.435 27.362 1.00 99.90 O ATOM 157 CA GLN 67 12.148 19.042 27.703 1.00 99.90 C ATOM 158 N GLN 67 11.058 19.286 26.749 1.00 99.90 N ATOM 159 C GLN 67 11.673 19.139 29.158 1.00 99.90 C ATOM 160 O GLN 67 12.101 18.359 29.995 1.00 99.90 O ATOM 161 CA GLU 68 10.213 20.221 30.786 1.00 99.90 C ATOM 162 N GLU 68 10.772 20.074 29.440 1.00 99.90 N ATOM 163 C GLU 68 9.370 19.015 31.141 1.00 99.90 C ATOM 164 O GLU 68 9.438 18.518 32.251 1.00 99.90 O ATOM 165 CA PHE 69 7.758 17.346 30.367 1.00 99.90 C ATOM 166 N PHE 69 8.582 18.548 30.178 1.00 99.90 N ATOM 167 C PHE 69 8.656 16.169 30.730 1.00 99.90 C ATOM 168 O PHE 69 8.360 15.460 31.683 1.00 99.90 O ATOM 169 CA GLY 70 10.616 14.801 30.205 1.00 99.90 C ATOM 170 N GLY 70 9.729 15.943 29.977 1.00 99.90 N ATOM 171 C GLY 70 11.317 14.903 31.552 1.00 99.90 C ATOM 172 O GLY 70 11.553 13.896 32.255 1.00 99.90 O ATOM 173 CA ARG 71 12.365 16.395 33.136 1.00 99.90 C ATOM 174 N ARG 71 11.670 16.125 31.894 1.00 99.90 N ATOM 175 C ARG 71 11.477 15.979 34.316 1.00 99.90 C ATOM 176 O ARG 71 11.877 15.166 35.164 1.00 99.90 O ATOM 177 CA TRP 72 9.404 16.287 35.515 1.00 99.90 C ATOM 178 N TRP 72 10.270 16.508 34.358 1.00 99.90 N ATOM 179 C TRP 72 8.828 14.880 35.532 1.00 99.90 C ATOM 180 O TRP 72 8.686 14.281 36.598 1.00 99.90 O ATOM 181 CA TYR 73 8.080 12.953 34.281 1.00 99.90 C ATOM 182 N TYR 73 8.547 14.330 34.349 1.00 99.90 N ATOM 183 C TYR 73 9.195 11.910 34.441 1.00 99.90 C ATOM 184 O TYR 73 8.920 10.712 34.409 1.00 99.90 O ATOM 185 CA LYS 74 11.568 11.474 34.873 1.00 99.90 C ATOM 186 N LYS 74 10.431 12.357 34.639 1.00 99.90 N ATOM 187 C LYS 74 11.584 10.295 33.908 1.00 99.90 C ATOM 188 O LYS 74 11.710 9.125 34.296 1.00 99.90 O ATOM 189 CA HIS 75 11.324 9.665 31.551 1.00 99.90 C ATOM 190 N HIS 75 11.418 10.637 32.631 1.00 99.90 N ATOM 191 C HIS 75 12.155 10.199 30.381 1.00 99.90 C ATOM 192 O HIS 75 12.039 11.391 30.059 1.00 99.90 O ATOM 193 CA PHE 76 13.715 9.811 28.554 1.00 99.90 C ATOM 194 N PHE 76 12.978 9.356 29.738 1.00 99.90 N ATOM 195 C PHE 76 12.737 10.419 27.581 1.00 99.90 C ATOM 196 O PHE 76 11.658 9.857 27.351 1.00 99.90 O ATOM 197 CA LYS 77 12.243 12.328 26.162 1.00 99.90 C ATOM 198 N LYS 77 13.098 11.577 27.057 1.00 99.90 N ATOM 199 C LYS 77 11.757 11.470 25.002 1.00 99.90 C ATOM 200 O LYS 77 10.609 11.565 24.603 1.00 99.90 O ATOM 201 CA LYS 78 12.242 9.802 23.326 1.00 99.90 C ATOM 202 N LYS 78 12.619 10.607 24.479 1.00 99.90 N ATOM 203 C LYS 78 11.286 8.666 23.634 1.00 99.90 C ATOM 204 O LYS 78 10.659 8.154 22.726 1.00 99.90 O ATOM 205 CA THR 79 10.029 7.446 25.322 1.00 99.90 C ATOM 206 N THR 79 11.115 8.326 24.904 1.00 99.90 N ATOM 207 C THR 79 8.681 8.159 25.292 1.00 99.90 C ATOM 208 O THR 79 7.643 7.505 25.207 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 208 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.01 67.0 100 69.4 144 ARMSMC SECONDARY STRUCTURE . . 40.45 87.7 57 79.2 72 ARMSMC SURFACE . . . . . . . . 61.82 68.1 69 70.4 98 ARMSMC BURIED . . . . . . . . 59.16 64.5 31 67.4 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 64 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 48 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 48 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.78 (Number of atoms: 52) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.78 52 71.2 73 CRMSCA CRN = ALL/NP . . . . . 0.0920 CRMSCA SECONDARY STRUCTURE . . 4.31 29 80.6 36 CRMSCA SURFACE . . . . . . . . 5.27 36 72.0 50 CRMSCA BURIED . . . . . . . . 3.45 16 69.6 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.88 208 57.1 364 CRMSMC SECONDARY STRUCTURE . . 4.48 116 64.8 179 CRMSMC SURFACE . . . . . . . . 5.37 144 57.6 250 CRMSMC BURIED . . . . . . . . 3.53 64 56.1 114 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 299 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 245 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 207 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.88 208 35.2 591 CRMSALL SECONDARY STRUCTURE . . 4.48 116 39.1 297 CRMSALL SURFACE . . . . . . . . 5.37 144 35.4 407 CRMSALL BURIED . . . . . . . . 3.53 64 34.8 184 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 95.930 0.925 0.928 52 71.2 73 ERRCA SECONDARY STRUCTURE . . 96.517 0.936 0.939 29 80.6 36 ERRCA SURFACE . . . . . . . . 95.549 0.918 0.922 36 72.0 50 ERRCA BURIED . . . . . . . . 96.786 0.940 0.942 16 69.6 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 95.921 0.925 0.928 208 57.1 364 ERRMC SECONDARY STRUCTURE . . 96.443 0.934 0.938 116 64.8 179 ERRMC SURFACE . . . . . . . . 95.593 0.919 0.924 144 57.6 250 ERRMC BURIED . . . . . . . . 96.659 0.938 0.940 64 56.1 114 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 299 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 245 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 207 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 95.921 0.925 0.928 208 35.2 591 ERRALL SECONDARY STRUCTURE . . 96.443 0.934 0.938 116 39.1 297 ERRALL SURFACE . . . . . . . . 95.593 0.919 0.924 144 35.4 407 ERRALL BURIED . . . . . . . . 96.659 0.938 0.940 64 34.8 184 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 3 8 22 40 50 52 73 DISTCA CA (P) 4.11 10.96 30.14 54.79 68.49 73 DISTCA CA (RMS) 0.68 1.26 2.14 3.13 4.00 DISTCA ALL (N) 9 33 85 162 198 208 591 DISTALL ALL (P) 1.52 5.58 14.38 27.41 33.50 591 DISTALL ALL (RMS) 0.73 1.37 2.13 3.09 3.84 DISTALL END of the results output