####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 180), selected 45 , name T0643AL285_1-D1 # Molecule2: number of CA atoms 73 ( 591), selected 45 , name T0643-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0643AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 15 - 55 4.95 7.42 LCS_AVERAGE: 54.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 34 - 55 1.45 11.65 LCS_AVERAGE: 24.47 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 18 - 31 0.62 16.31 LONGEST_CONTINUOUS_SEGMENT: 14 41 - 54 0.93 12.30 LONGEST_CONTINUOUS_SEGMENT: 14 42 - 55 0.99 12.39 LCS_AVERAGE: 16.23 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 11 M 11 7 8 23 6 7 7 7 8 9 10 14 14 14 16 18 18 18 21 21 23 23 24 24 LCS_GDT L 12 L 12 7 8 23 6 7 7 7 8 9 10 14 14 15 18 20 21 21 21 22 29 31 33 34 LCS_GDT P 13 P 13 7 8 37 6 7 7 7 8 9 10 14 14 15 18 20 24 29 32 35 36 38 41 41 LCS_GDT P 14 P 14 7 8 40 6 7 7 7 8 11 11 14 16 17 18 20 23 28 31 37 38 39 41 41 LCS_GDT E 15 E 15 7 8 41 6 7 7 7 8 11 13 18 22 26 30 33 35 36 38 39 39 40 41 41 LCS_GDT Q 16 Q 16 7 8 41 6 7 7 7 8 11 18 20 23 26 30 33 35 36 38 39 39 40 41 41 LCS_GDT W 17 W 17 7 16 41 4 7 7 7 10 12 18 20 23 26 30 33 35 36 38 39 39 40 41 41 LCS_GDT S 18 S 18 14 16 41 13 13 14 15 16 16 18 23 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT H 19 H 19 14 16 41 13 13 14 15 16 20 23 24 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT T 20 T 20 14 16 41 13 13 14 15 16 19 23 24 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT T 21 T 21 14 16 41 13 13 14 15 16 16 20 23 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT V 22 V 22 14 16 41 13 13 14 15 16 16 17 23 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT R 23 R 23 14 16 41 13 13 14 15 17 20 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT N 24 N 24 14 16 41 13 13 14 15 16 19 23 24 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT A 25 A 25 14 16 41 13 13 14 15 16 16 18 23 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT L 26 L 26 14 16 41 13 13 14 15 16 16 17 23 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT K 27 K 27 14 16 41 13 13 14 15 19 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT D 28 D 28 14 16 41 13 13 14 15 16 20 23 24 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT L 29 L 29 14 16 41 13 13 14 15 16 16 16 21 26 28 31 33 35 37 38 39 39 40 41 41 LCS_GDT L 30 L 30 14 16 41 13 13 14 15 16 16 16 21 25 28 31 33 35 37 38 39 39 40 41 41 LCS_GDT K 31 K 31 14 16 41 5 10 14 15 21 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT D 32 D 32 8 16 41 4 5 10 15 18 22 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT M 33 M 33 7 16 41 4 5 9 13 16 16 16 17 21 23 30 33 35 37 38 39 39 40 41 41 LCS_GDT N 34 N 34 9 22 41 8 10 13 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT Q 35 Q 35 9 22 41 8 10 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 36 S 36 9 22 41 8 10 13 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 37 S 37 9 22 41 8 10 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT L 38 L 38 9 22 41 8 10 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT A 39 A 39 9 22 41 8 10 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT K 40 K 40 9 22 41 8 10 13 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT E 41 E 41 14 22 41 8 10 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT C 42 C 42 14 22 41 4 10 14 20 22 23 24 26 26 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT P 43 P 43 14 22 41 11 11 14 20 22 23 24 26 26 29 31 32 35 37 38 39 39 40 41 41 LCS_GDT L 44 L 44 14 22 41 6 8 14 20 22 23 24 26 26 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 45 S 45 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT Q 46 Q 46 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 47 S 47 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT M 48 M 48 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT I 49 I 49 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 50 S 50 14 22 41 11 11 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT S 51 S 51 14 22 41 11 11 14 20 22 23 24 26 26 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT I 52 I 52 14 22 41 11 11 14 20 22 23 24 26 26 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT V 53 V 53 14 22 41 11 11 14 20 22 23 24 26 26 29 31 33 35 37 38 39 39 40 41 41 LCS_GDT N 54 N 54 14 22 41 11 11 14 20 22 23 24 26 26 29 31 32 35 37 38 38 39 40 40 41 LCS_GDT S 55 S 55 14 22 41 3 4 12 19 22 23 24 26 26 29 31 32 35 36 38 38 38 39 40 41 LCS_AVERAGE LCS_A: 31.87 ( 16.23 24.47 54.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 13 14 20 22 23 24 26 27 29 31 33 35 37 38 39 39 40 41 41 GDT PERCENT_AT 17.81 17.81 19.18 27.40 30.14 31.51 32.88 35.62 36.99 39.73 42.47 45.21 47.95 50.68 52.05 53.42 53.42 54.79 56.16 56.16 GDT RMS_LOCAL 0.34 0.34 0.67 1.33 1.45 1.69 1.89 2.21 3.09 2.90 3.20 3.68 3.81 4.14 4.25 4.59 4.57 4.75 5.34 4.95 GDT RMS_ALL_AT 16.39 16.39 12.33 11.54 11.65 11.30 11.04 10.70 7.76 9.72 9.45 7.89 9.05 8.15 8.39 7.20 7.49 7.28 6.90 7.42 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 11 M 11 30.478 4 0.019 0.019 32.801 0.000 0.000 LGA L 12 L 12 24.923 4 0.148 0.148 26.542 0.000 0.000 LGA P 13 P 13 26.056 3 0.052 0.052 26.056 0.000 0.000 LGA P 14 P 14 25.504 3 0.063 0.063 26.156 0.000 0.000 LGA E 15 E 15 21.465 5 0.206 0.206 23.159 0.000 0.000 LGA Q 16 Q 16 17.328 5 0.185 0.185 18.871 0.000 0.000 LGA W 17 W 17 17.539 10 0.607 0.607 18.013 0.000 0.000 LGA S 18 S 18 14.321 2 0.639 0.639 15.036 0.000 0.000 LGA H 19 H 19 8.438 6 0.065 0.065 10.313 7.976 3.190 LGA T 20 T 20 7.591 3 0.021 0.021 9.031 5.119 2.925 LGA T 21 T 21 12.747 3 0.026 0.026 12.747 0.000 0.000 LGA V 22 V 22 11.111 3 0.039 0.039 11.292 1.429 0.816 LGA R 23 R 23 4.474 7 0.059 0.059 6.651 32.738 11.905 LGA N 24 N 24 7.452 4 0.033 0.033 8.068 9.762 4.881 LGA A 25 A 25 10.601 1 0.035 0.035 10.601 1.071 0.857 LGA L 26 L 26 7.522 4 0.035 0.035 8.010 13.690 6.845 LGA K 27 K 27 2.892 5 0.053 0.053 3.913 48.452 21.534 LGA D 28 D 28 7.288 4 0.055 0.055 7.288 12.857 6.429 LGA L 29 L 29 8.936 4 0.059 0.059 8.936 6.786 3.393 LGA L 30 L 30 5.874 4 0.043 0.043 5.970 29.405 14.702 LGA K 31 K 31 1.545 5 0.074 0.074 2.231 70.952 31.534 LGA D 32 D 32 3.511 4 0.363 0.363 4.269 45.238 22.619 LGA M 33 M 33 7.937 4 0.635 0.635 9.278 7.619 3.810 LGA N 34 N 34 0.862 4 0.091 0.091 1.246 85.952 42.976 LGA Q 35 Q 35 0.766 5 0.048 0.048 1.100 88.214 39.206 LGA S 36 S 36 1.374 2 0.061 0.061 1.540 79.286 52.857 LGA S 37 S 37 1.685 2 0.012 0.012 1.851 72.857 48.571 LGA L 38 L 38 1.525 4 0.023 0.023 1.896 72.857 36.429 LGA A 39 A 39 1.495 1 0.129 0.129 2.295 75.119 60.095 LGA K 40 K 40 2.313 5 0.309 0.309 4.062 57.976 25.767 LGA E 41 E 41 2.517 5 0.087 0.087 2.866 60.952 27.090 LGA C 42 C 42 2.361 2 0.632 0.632 3.164 63.095 42.063 LGA P 43 P 43 2.644 3 0.201 0.201 3.052 59.286 33.878 LGA L 44 L 44 3.220 4 0.156 0.156 3.220 53.571 26.786 LGA S 45 S 45 2.786 2 0.013 0.013 2.821 62.976 41.984 LGA Q 46 Q 46 1.986 5 0.045 0.045 2.282 72.976 32.434 LGA S 47 S 47 2.296 2 0.063 0.063 2.296 70.952 47.302 LGA M 48 M 48 2.031 4 0.036 0.036 2.031 70.952 35.476 LGA I 49 I 49 0.419 4 0.040 0.040 0.918 95.238 47.619 LGA S 50 S 50 0.626 2 0.015 0.015 0.905 95.238 63.492 LGA S 51 S 51 0.787 2 0.022 0.022 1.576 86.190 57.460 LGA I 52 I 52 1.701 4 0.072 0.072 2.103 72.976 36.488 LGA V 53 V 53 1.842 3 0.080 0.080 2.099 70.833 40.476 LGA N 54 N 54 1.930 4 0.234 0.234 2.428 68.810 34.405 LGA S 55 S 55 2.584 2 0.509 0.509 4.100 52.262 34.841 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 348 180 51.72 73 SUMMARY(RMSD_GDC): 6.802 6.670 6.670 25.776 14.290 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 73 4.0 26 2.21 33.562 31.647 1.124 LGA_LOCAL RMSD: 2.213 Number of atoms: 26 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.698 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 6.802 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.049366 * X + -0.270234 * Y + -0.961528 * Z + 13.410745 Y_new = -0.393831 * X + 0.879434 * Y + -0.267381 * Z + 39.080799 Z_new = 0.917856 * X + 0.391879 * Y + -0.063012 * Z + 12.258235 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.446098 -1.162645 1.730226 [DEG: -82.8553 -66.6147 99.1347 ] ZXZ: -1.299570 1.633850 1.167274 [DEG: -74.4599 93.6127 66.8799 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0643AL285_1-D1 REMARK 2: T0643-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0643AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 73 4.0 26 2.21 31.647 6.80 REMARK ---------------------------------------------------------- MOLECULE T0643AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 1lliA ATOM 1 N MET 11 -3.537 21.394 10.022 1.00 0.00 N ATOM 2 CA MET 11 -3.440 20.009 10.443 1.00 0.00 C ATOM 3 C MET 11 -1.994 19.612 10.697 1.00 0.00 C ATOM 4 O MET 11 -1.082 20.144 10.044 1.00 0.00 O ATOM 5 N LEU 12 -1.772 18.745 11.695 1.00 0.00 N ATOM 6 CA LEU 12 -0.428 18.222 11.952 1.00 0.00 C ATOM 7 C LEU 12 -0.186 17.098 10.952 1.00 0.00 C ATOM 8 O LEU 12 -1.149 16.685 10.303 1.00 0.00 O ATOM 9 N PRO 13 1.010 16.529 10.789 1.00 0.00 N ATOM 10 CA PRO 13 1.180 15.424 9.851 1.00 0.00 C ATOM 11 C PRO 13 0.562 14.110 10.395 1.00 0.00 C ATOM 12 O PRO 13 0.367 13.967 11.617 1.00 0.00 O ATOM 13 N PRO 14 0.235 13.112 9.552 1.00 0.00 N ATOM 14 CA PRO 14 -0.260 11.824 10.012 1.00 0.00 C ATOM 15 C PRO 14 0.728 11.163 10.968 1.00 0.00 C ATOM 16 O PRO 14 0.280 10.543 11.915 1.00 0.00 O ATOM 17 N GLU 15 2.041 11.288 10.839 1.00 0.00 N ATOM 18 CA GLU 15 2.893 10.672 11.800 1.00 0.00 C ATOM 19 C GLU 15 2.689 11.400 13.115 1.00 0.00 C ATOM 20 O GLU 15 2.461 10.746 14.136 1.00 0.00 O ATOM 21 N GLN 16 2.699 12.737 13.141 1.00 0.00 N ATOM 22 CA GLN 16 2.422 13.485 14.359 1.00 0.00 C ATOM 23 C GLN 16 1.067 13.121 14.971 1.00 0.00 C ATOM 24 O GLN 16 0.947 13.046 16.199 1.00 0.00 O ATOM 25 N TRP 17 0.019 12.889 14.176 1.00 0.00 N ATOM 26 CA TRP 17 -1.236 12.486 14.744 1.00 0.00 C ATOM 27 C TRP 17 -1.110 11.075 15.304 1.00 0.00 C ATOM 28 O TRP 17 -1.689 10.772 16.347 1.00 0.00 O ATOM 29 N SER 18 -0.256 10.206 14.777 1.00 0.00 N ATOM 30 CA SER 18 -0.151 8.878 15.332 1.00 0.00 C ATOM 31 C SER 18 0.539 8.863 16.661 1.00 0.00 C ATOM 32 O SER 18 0.171 8.029 17.482 1.00 0.00 O ATOM 33 N HIS 19 1.536 9.731 16.855 1.00 0.00 N ATOM 34 CA HIS 19 2.283 9.889 18.101 1.00 0.00 C ATOM 35 C HIS 19 1.358 10.421 19.175 1.00 0.00 C ATOM 36 O HIS 19 1.388 9.979 20.320 1.00 0.00 O ATOM 37 N THR 20 0.485 11.367 18.856 1.00 0.00 N ATOM 38 CA THR 20 -0.502 11.855 19.787 1.00 0.00 C ATOM 39 C THR 20 -1.487 10.754 20.163 1.00 0.00 C ATOM 40 O THR 20 -1.828 10.638 21.349 1.00 0.00 O ATOM 41 N THR 21 -1.974 9.912 19.235 1.00 0.00 N ATOM 42 CA THR 21 -2.825 8.786 19.582 1.00 0.00 C ATOM 43 C THR 21 -2.120 7.770 20.457 1.00 0.00 C ATOM 44 O THR 21 -2.691 7.319 21.459 1.00 0.00 O ATOM 45 N VAL 22 -0.876 7.390 20.186 1.00 0.00 N ATOM 46 CA VAL 22 -0.137 6.514 21.076 1.00 0.00 C ATOM 47 C VAL 22 0.063 7.153 22.439 1.00 0.00 C ATOM 48 O VAL 22 -0.101 6.465 23.451 1.00 0.00 O ATOM 49 N ARG 23 0.424 8.431 22.530 1.00 0.00 N ATOM 50 CA ARG 23 0.567 9.132 23.803 1.00 0.00 C ATOM 51 C ARG 23 -0.723 9.162 24.612 1.00 0.00 C ATOM 52 O ARG 23 -0.729 8.849 25.805 1.00 0.00 O ATOM 53 N ASN 24 -1.849 9.515 24.031 1.00 0.00 N ATOM 54 CA ASN 24 -3.074 9.549 24.795 1.00 0.00 C ATOM 55 C ASN 24 -3.504 8.159 25.259 1.00 0.00 C ATOM 56 O ASN 24 -4.050 8.044 26.350 1.00 0.00 O ATOM 57 N ALA 25 -3.240 7.104 24.483 1.00 0.00 N ATOM 58 CA ALA 25 -3.616 5.747 24.822 1.00 0.00 C ATOM 59 C ALA 25 -2.831 5.306 26.023 1.00 0.00 C ATOM 60 O ALA 25 -3.394 4.645 26.885 1.00 0.00 O ATOM 61 N LEU 26 -1.572 5.701 26.169 1.00 0.00 N ATOM 62 CA LEU 26 -0.803 5.360 27.349 1.00 0.00 C ATOM 63 C LEU 26 -1.386 6.046 28.547 1.00 0.00 C ATOM 64 O LEU 26 -1.477 5.435 29.606 1.00 0.00 O ATOM 65 N LYS 27 -1.766 7.307 28.431 1.00 0.00 N ATOM 66 CA LYS 27 -2.400 8.014 29.521 1.00 0.00 C ATOM 67 C LYS 27 -3.701 7.329 29.947 1.00 0.00 C ATOM 68 O LYS 27 -3.917 7.120 31.131 1.00 0.00 O ATOM 69 N ASP 28 -4.602 6.983 29.052 1.00 0.00 N ATOM 70 CA ASP 28 -5.797 6.245 29.389 1.00 0.00 C ATOM 71 C ASP 28 -5.425 4.911 30.023 1.00 0.00 C ATOM 72 O ASP 28 -6.005 4.605 31.050 1.00 0.00 O ATOM 73 N LEU 29 -4.459 4.099 29.606 1.00 0.00 N ATOM 74 CA LEU 29 -4.082 2.903 30.352 1.00 0.00 C ATOM 75 C LEU 29 -3.483 3.185 31.742 1.00 0.00 C ATOM 76 O LEU 29 -3.643 2.395 32.683 1.00 0.00 O ATOM 77 N LEU 30 -2.768 4.278 31.948 1.00 0.00 N ATOM 78 CA LEU 30 -2.028 4.430 33.174 1.00 0.00 C ATOM 79 C LEU 30 -2.605 5.435 34.090 1.00 0.00 C ATOM 80 O LEU 30 -2.105 5.520 35.210 1.00 0.00 O ATOM 81 N LYS 31 -3.669 6.139 33.709 1.00 0.00 N ATOM 82 CA LYS 31 -4.119 7.240 34.541 1.00 0.00 C ATOM 83 C LYS 31 -4.585 6.855 35.924 1.00 0.00 C ATOM 84 O LYS 31 -4.285 7.567 36.887 1.00 0.00 O ATOM 85 N ASP 32 -5.274 5.724 36.085 1.00 0.00 N ATOM 86 CA ASP 32 -5.735 5.368 37.415 1.00 0.00 C ATOM 87 C ASP 32 -4.566 4.855 38.232 1.00 0.00 C ATOM 88 O ASP 32 -4.304 5.463 39.263 1.00 0.00 O ATOM 89 N MET 33 -3.754 3.893 37.820 1.00 0.00 N ATOM 90 CA MET 33 -2.595 3.501 38.602 1.00 0.00 C ATOM 91 C MET 33 -1.679 4.654 38.952 1.00 0.00 C ATOM 92 O MET 33 -1.178 4.680 40.074 1.00 0.00 O ATOM 93 N ASN 34 -4.566 13.131 35.896 1.00 0.00 N ATOM 94 CA ASN 34 -5.650 13.650 35.084 1.00 0.00 C ATOM 95 C ASN 34 -4.944 14.680 34.196 1.00 0.00 C ATOM 96 O ASN 34 -3.751 14.961 34.435 1.00 0.00 O ATOM 97 N GLN 35 -5.631 15.248 33.184 1.00 0.00 N ATOM 98 CA GLN 35 -5.090 16.332 32.345 1.00 0.00 C ATOM 99 C GLN 35 -4.726 17.544 33.174 1.00 0.00 C ATOM 100 O GLN 35 -3.656 18.108 32.925 1.00 0.00 O ATOM 101 N SER 36 -5.495 18.001 34.178 1.00 0.00 N ATOM 102 CA SER 36 -5.049 19.097 35.020 1.00 0.00 C ATOM 103 C SER 36 -3.804 18.797 35.892 1.00 0.00 C ATOM 104 O SER 36 -2.936 19.652 36.048 1.00 0.00 O ATOM 105 N SER 37 -3.546 17.650 36.494 1.00 0.00 N ATOM 106 CA SER 37 -2.323 17.434 37.262 1.00 0.00 C ATOM 107 C SER 37 -1.098 17.359 36.365 1.00 0.00 C ATOM 108 O SER 37 -0.047 17.903 36.709 1.00 0.00 O ATOM 109 N LEU 38 -1.186 16.676 35.220 1.00 0.00 N ATOM 110 CA LEU 38 -0.145 16.713 34.211 1.00 0.00 C ATOM 111 C LEU 38 0.120 18.149 33.741 1.00 0.00 C ATOM 112 O LEU 38 1.269 18.549 33.523 1.00 0.00 O ATOM 113 N ALA 39 -0.932 18.941 33.524 1.00 0.00 N ATOM 114 CA ALA 39 -0.801 20.326 33.180 1.00 0.00 C ATOM 115 C ALA 39 0.111 20.973 34.192 1.00 0.00 C ATOM 116 O ALA 39 1.149 21.527 33.834 1.00 0.00 O ATOM 117 N LYS 40 -0.196 20.833 35.482 1.00 0.00 N ATOM 118 CA LYS 40 0.607 21.423 36.552 1.00 0.00 C ATOM 119 C LYS 40 2.053 20.958 36.499 1.00 0.00 C ATOM 120 O LYS 40 2.937 21.804 36.476 1.00 0.00 O ATOM 121 N GLU 41 2.378 19.671 36.391 1.00 0.00 N ATOM 122 CA GLU 41 3.765 19.213 36.324 1.00 0.00 C ATOM 123 C GLU 41 4.540 19.771 35.132 1.00 0.00 C ATOM 124 O GLU 41 5.765 19.870 35.177 1.00 0.00 O ATOM 125 N CYS 42 3.919 20.121 34.006 1.00 0.00 N ATOM 126 CA CYS 42 4.649 20.707 32.889 1.00 0.00 C ATOM 127 C CYS 42 4.470 22.226 32.906 1.00 0.00 C ATOM 128 O CYS 42 4.789 22.896 31.913 1.00 0.00 O ATOM 129 N PRO 43 3.891 22.760 33.993 1.00 0.00 N ATOM 130 CA PRO 43 3.668 24.181 34.209 1.00 0.00 C ATOM 131 C PRO 43 2.829 24.806 33.113 1.00 0.00 C ATOM 132 O PRO 43 3.053 25.952 32.714 1.00 0.00 O ATOM 133 N LEU 44 1.827 24.074 32.667 1.00 0.00 N ATOM 134 CA LEU 44 1.041 24.434 31.524 1.00 0.00 C ATOM 135 C LEU 44 -0.411 24.316 31.987 1.00 0.00 C ATOM 136 O LEU 44 -0.663 23.910 33.126 1.00 0.00 O ATOM 137 N SER 45 -1.422 24.642 31.175 1.00 0.00 N ATOM 138 CA SER 45 -2.830 24.523 31.547 1.00 0.00 C ATOM 139 C SER 45 -3.414 23.210 31.009 1.00 0.00 C ATOM 140 O SER 45 -2.843 22.564 30.106 1.00 0.00 O ATOM 141 N GLN 46 -4.583 22.818 31.525 1.00 0.00 N ATOM 142 CA GLN 46 -5.218 21.611 31.082 1.00 0.00 C ATOM 143 C GLN 46 -5.495 21.712 29.608 1.00 0.00 C ATOM 144 O GLN 46 -5.336 20.679 28.969 1.00 0.00 O ATOM 145 N SER 47 -5.919 22.848 29.031 1.00 0.00 N ATOM 146 CA SER 47 -6.230 22.888 27.602 1.00 0.00 C ATOM 147 C SER 47 -4.981 22.755 26.763 1.00 0.00 C ATOM 148 O SER 47 -5.099 22.208 25.661 1.00 0.00 O ATOM 149 N MET 48 -3.818 23.140 27.332 1.00 0.00 N ATOM 150 CA MET 48 -2.515 22.953 26.706 1.00 0.00 C ATOM 151 C MET 48 -2.214 21.483 26.577 1.00 0.00 C ATOM 152 O MET 48 -1.777 21.017 25.540 1.00 0.00 O ATOM 153 N ILE 49 -2.483 20.677 27.601 1.00 0.00 N ATOM 154 CA ILE 49 -2.339 19.222 27.570 1.00 0.00 C ATOM 155 C ILE 49 -3.345 18.552 26.654 1.00 0.00 C ATOM 156 O ILE 49 -3.005 17.630 25.891 1.00 0.00 O ATOM 157 N SER 50 -4.597 18.954 26.691 1.00 0.00 N ATOM 158 CA SER 50 -5.580 18.352 25.797 1.00 0.00 C ATOM 159 C SER 50 -5.186 18.503 24.326 1.00 0.00 C ATOM 160 O SER 50 -5.287 17.574 23.507 1.00 0.00 O ATOM 161 N SER 51 -4.667 19.680 23.972 1.00 0.00 N ATOM 162 CA SER 51 -4.188 19.962 22.624 1.00 0.00 C ATOM 163 C SER 51 -3.065 19.026 22.246 1.00 0.00 C ATOM 164 O SER 51 -3.072 18.519 21.128 1.00 0.00 O ATOM 165 N ILE 52 -2.116 18.697 23.144 1.00 0.00 N ATOM 166 CA ILE 52 -1.071 17.743 22.820 1.00 0.00 C ATOM 167 C ILE 52 -1.692 16.357 22.673 1.00 0.00 C ATOM 168 O ILE 52 -1.546 15.718 21.625 1.00 0.00 O ATOM 169 N VAL 53 -2.504 15.892 23.630 1.00 0.00 N ATOM 170 CA VAL 53 -3.108 14.547 23.559 1.00 0.00 C ATOM 171 C VAL 53 -3.976 14.273 22.371 1.00 0.00 C ATOM 172 O VAL 53 -4.100 13.155 21.851 1.00 0.00 O ATOM 173 N ASN 54 -4.618 15.367 21.995 1.00 0.00 N ATOM 174 CA ASN 54 -5.548 15.302 20.882 1.00 0.00 C ATOM 175 C ASN 54 -5.013 15.701 19.515 1.00 0.00 C ATOM 176 O ASN 54 -5.807 15.959 18.620 1.00 0.00 O ATOM 177 N SER 55 -3.702 15.758 19.289 1.00 0.00 N ATOM 178 CA SER 55 -3.183 16.020 17.957 1.00 0.00 C ATOM 179 C SER 55 -3.588 17.387 17.396 1.00 0.00 C ATOM 180 O SER 55 -3.800 17.521 16.189 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 180 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 44.91 76.1 88 61.1 144 ARMSMC SECONDARY STRUCTURE . . 9.99 97.5 40 55.6 72 ARMSMC SURFACE . . . . . . . . 34.46 76.8 56 57.1 98 ARMSMC BURIED . . . . . . . . 58.89 75.0 32 69.6 46 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 67 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 64 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 48 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 48 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 33 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 24 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 14 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 19 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 11 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 17 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.80 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.80 45 61.6 73 CRMSCA CRN = ALL/NP . . . . . 0.1512 CRMSCA SECONDARY STRUCTURE . . 5.86 20 55.6 36 CRMSCA SURFACE . . . . . . . . 7.19 29 58.0 50 CRMSCA BURIED . . . . . . . . 6.04 16 69.6 23 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.67 180 49.5 364 CRMSMC SECONDARY STRUCTURE . . 5.83 80 44.7 179 CRMSMC SURFACE . . . . . . . . 7.13 116 46.4 250 CRMSMC BURIED . . . . . . . . 5.76 64 56.1 114 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 299 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 245 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 207 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 92 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.67 180 30.5 591 CRMSALL SECONDARY STRUCTURE . . 5.83 80 26.9 297 CRMSALL SURFACE . . . . . . . . 7.13 116 28.5 407 CRMSALL BURIED . . . . . . . . 5.76 64 34.8 184 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.792 1.000 0.500 45 61.6 73 ERRCA SECONDARY STRUCTURE . . 5.353 1.000 0.500 20 55.6 36 ERRCA SURFACE . . . . . . . . 5.911 1.000 0.500 29 58.0 50 ERRCA BURIED . . . . . . . . 5.577 1.000 0.500 16 69.6 23 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.631 1.000 0.500 180 49.5 364 ERRMC SECONDARY STRUCTURE . . 5.259 1.000 0.500 80 44.7 179 ERRMC SURFACE . . . . . . . . 5.779 1.000 0.500 116 46.4 250 ERRMC BURIED . . . . . . . . 5.364 1.000 0.500 64 56.1 114 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 299 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 245 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 207 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 92 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.631 1.000 0.500 180 30.5 591 ERRALL SECONDARY STRUCTURE . . 5.259 1.000 0.500 80 26.9 297 ERRALL SURFACE . . . . . . . . 5.779 1.000 0.500 116 28.5 407 ERRALL BURIED . . . . . . . . 5.364 1.000 0.500 64 34.8 184 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 3 8 22 39 45 73 DISTCA CA (P) 0.00 4.11 10.96 30.14 53.42 73 DISTCA CA (RMS) 0.00 1.74 2.23 3.35 5.07 DISTCA ALL (N) 0 13 38 97 160 180 591 DISTALL ALL (P) 0.00 2.20 6.43 16.41 27.07 591 DISTALL ALL (RMS) 0.00 1.73 2.26 3.41 5.07 DISTALL END of the results output