####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 21 ( 164), selected 21 , name T0639TS117_1_2-D1 # Molecule2: number of CA atoms 124 ( 1002), selected 21 , name T0639-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0639TS117_1_2-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 93 - 108 4.54 10.80 LCS_AVERAGE: 12.71 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 96 - 108 0.86 13.26 LCS_AVERAGE: 8.53 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 96 - 108 0.86 13.26 LCS_AVERAGE: 8.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 21 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT F 88 F 88 6 7 15 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 15 16 16 18 19 LCS_GDT M 89 M 89 6 7 15 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 15 16 17 18 19 LCS_GDT A 90 A 90 6 7 15 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 16 16 17 18 19 LCS_GDT M 91 M 91 6 7 15 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 16 16 17 18 19 LCS_GDT I 92 I 92 6 7 15 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 16 16 17 18 19 LCS_GDT Y 93 Y 93 6 7 16 4 6 6 6 8 8 9 9 11 12 12 14 14 14 15 16 16 17 18 19 LCS_GDT A 94 A 94 3 7 16 3 3 3 5 8 8 9 9 11 12 12 14 14 15 15 16 16 17 18 19 LCS_GDT G 95 G 95 3 4 16 3 3 3 4 4 4 5 8 11 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT N 96 N 96 13 13 16 4 7 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT L 97 L 97 13 13 16 5 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT S 98 S 98 13 13 16 4 5 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT L 99 L 99 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT I 100 I 100 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT F 101 F 101 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT D 102 D 102 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT S 103 S 103 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT I 104 I 104 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT K 105 K 105 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT T 106 T 106 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 LCS_GDT D 107 D 107 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 16 17 17 LCS_GDT I 108 I 108 13 13 16 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 16 17 17 LCS_AVERAGE LCS_A: 9.78 ( 8.10 8.53 12.71 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 11 13 13 13 13 13 13 13 14 14 14 14 15 15 16 16 17 18 19 GDT PERCENT_AT 8.06 8.87 10.48 10.48 10.48 10.48 10.48 10.48 10.48 11.29 11.29 11.29 11.29 12.10 12.10 12.90 12.90 13.71 14.52 15.32 GDT RMS_LOCAL 0.33 0.51 0.86 0.86 0.86 0.86 0.86 0.86 0.86 2.30 2.30 2.30 2.30 3.50 3.50 4.54 5.02 6.22 6.47 6.58 GDT RMS_ALL_AT 13.87 13.65 13.26 13.26 13.26 13.26 13.26 13.26 13.26 12.41 12.41 12.41 12.41 11.58 11.58 10.80 9.59 7.84 7.88 8.07 # Checking swapping # possible swapping detected: F 88 F 88 # possible swapping detected: Y 93 Y 93 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA F 88 F 88 31.822 0 0.108 1.312 34.352 0.000 0.000 LGA M 89 M 89 26.612 0 0.087 0.769 28.975 0.000 0.000 LGA A 90 A 90 23.496 0 0.099 0.119 25.174 0.000 0.000 LGA M 91 M 91 23.992 0 0.128 0.896 27.869 0.000 0.000 LGA I 92 I 92 19.303 0 0.280 1.560 22.437 0.000 0.000 LGA Y 93 Y 93 15.126 0 0.688 1.447 16.979 0.000 0.000 LGA A 94 A 94 12.243 0 0.619 0.599 13.402 0.357 0.286 LGA G 95 G 95 8.986 0 0.228 0.228 9.817 9.405 9.405 LGA N 96 N 96 1.552 0 0.641 1.001 4.392 72.738 62.440 LGA L 97 L 97 0.540 0 0.092 0.210 1.613 83.810 84.881 LGA S 98 S 98 1.569 0 0.126 0.626 3.930 75.119 69.444 LGA L 99 L 99 0.981 0 0.072 1.381 4.906 88.333 71.667 LGA I 100 I 100 0.795 0 0.049 0.436 1.437 90.476 89.345 LGA F 101 F 101 0.657 0 0.047 1.329 6.926 90.476 59.654 LGA D 102 D 102 1.038 0 0.050 0.800 4.328 88.214 70.595 LGA S 103 S 103 0.555 0 0.130 0.689 1.856 92.857 89.127 LGA I 104 I 104 0.150 0 0.080 0.079 0.610 100.000 97.619 LGA K 105 K 105 0.462 0 0.098 0.146 1.942 100.000 87.831 LGA T 106 T 106 0.345 0 0.076 0.071 0.855 95.238 95.918 LGA D 107 D 107 0.560 0 0.063 0.957 3.245 92.857 78.333 LGA I 108 I 108 0.667 0 0.535 0.820 2.599 86.429 76.905 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 21 84 84 100.00 164 164 100.00 124 SUMMARY(RMSD_GDC): 7.680 7.578 8.242 9.406 8.415 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 21 124 4.0 13 0.86 10.685 10.185 1.350 LGA_LOCAL RMSD: 0.863 Number of atoms: 13 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.256 Number of assigned atoms: 21 Std_ASGN_ATOMS RMSD: 7.680 Standard rmsd on all 21 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.666503 * X + 0.673396 * Y + -0.319862 * Z + 25.390320 Y_new = 0.450700 * X + -0.022198 * Y + 0.892400 * Z + -26.448826 Z_new = 0.593838 * X + -0.738949 * Y + -0.318294 * Z + 70.805389 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.594584 -0.635820 -1.977518 [DEG: 34.0672 -36.4298 -113.3035 ] ZXZ: -2.797429 1.894726 2.464645 [DEG: -160.2809 108.5598 141.2138 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0639TS117_1_2-D1 REMARK 2: T0639-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0639TS117_1_2-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 21 124 4.0 13 0.86 10.185 7.68 REMARK ---------------------------------------------------------- MOLECULE T0639TS117_1_2-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 2 REMARK PFRMAT TS REMARK TARGET T0639 REMARK PARENT N/A ATOM 260 N PHE 88 15.170 12.595 45.296 1.00 0.00 N ATOM 261 CA PHE 88 15.761 13.834 44.843 1.00 0.00 C ATOM 262 C PHE 88 15.782 13.907 43.333 1.00 0.00 C ATOM 263 O PHE 88 15.774 14.997 42.763 1.00 0.00 O ATOM 264 CB PHE 88 17.208 14.072 45.366 1.00 0.00 C ATOM 265 CG PHE 88 17.219 14.397 46.845 1.00 0.00 C ATOM 266 CD1 PHE 88 17.753 13.519 47.751 1.00 0.00 C ATOM 267 CD2 PHE 88 16.684 15.568 47.352 1.00 0.00 C ATOM 268 CE1 PHE 88 17.504 13.664 49.091 1.00 0.00 C ATOM 269 CE2 PHE 88 16.493 15.751 48.715 1.00 0.00 C ATOM 270 CZ PHE 88 16.836 14.745 49.585 1.00 0.00 C ATOM 271 N MET 89 15.759 12.756 42.641 1.00 0.00 N ATOM 272 CA MET 89 15.902 12.755 41.213 1.00 0.00 C ATOM 273 C MET 89 14.512 12.865 40.672 1.00 0.00 C ATOM 274 O MET 89 14.302 13.300 39.546 1.00 0.00 O ATOM 275 CB MET 89 16.518 11.472 40.641 1.00 0.00 C ATOM 276 CG MET 89 18.047 11.434 40.752 1.00 0.00 C ATOM 277 SD MET 89 18.741 9.789 40.391 1.00 0.00 S ATOM 278 CE MET 89 18.580 9.862 38.579 1.00 0.00 C ATOM 279 N ALA 90 13.495 12.517 41.475 1.00 0.00 N ATOM 280 CA ALA 90 12.166 12.396 40.940 1.00 0.00 C ATOM 281 C ALA 90 11.655 13.792 40.804 1.00 0.00 C ATOM 282 O ALA 90 10.744 14.065 40.023 1.00 0.00 O ATOM 283 CB ALA 90 11.164 11.671 41.848 1.00 0.00 C ATOM 284 N MET 91 12.276 14.707 41.570 1.00 0.00 N ATOM 285 CA MET 91 11.956 16.094 41.611 1.00 0.00 C ATOM 286 C MET 91 12.240 16.744 40.293 1.00 0.00 C ATOM 287 O MET 91 11.646 17.780 40.003 1.00 0.00 O ATOM 288 CB MET 91 12.800 16.854 42.653 1.00 0.00 C ATOM 289 CG MET 91 12.388 16.637 44.117 1.00 0.00 C ATOM 290 SD MET 91 10.618 16.893 44.471 1.00 0.00 S ATOM 291 CE MET 91 10.659 18.699 44.286 1.00 0.00 C ATOM 292 N ILE 92 13.160 16.189 39.475 1.00 0.00 N ATOM 293 CA ILE 92 13.455 16.741 38.188 1.00 0.00 C ATOM 294 C ILE 92 13.095 15.822 37.019 1.00 0.00 C ATOM 295 O ILE 92 13.539 16.064 35.896 1.00 0.00 O ATOM 296 CB ILE 92 14.919 17.026 38.132 1.00 0.00 C ATOM 297 CG1 ILE 92 15.653 15.753 38.487 1.00 0.00 C ATOM 298 CG2 ILE 92 15.307 18.113 39.154 1.00 0.00 C ATOM 299 CD1 ILE 92 17.060 15.886 38.116 1.00 0.00 C ATOM 300 N TYR 93 12.279 14.762 37.216 1.00 0.00 N ATOM 301 CA TYR 93 12.200 13.695 36.238 1.00 0.00 C ATOM 302 C TYR 93 10.815 13.782 35.666 1.00 0.00 C ATOM 303 O TYR 93 9.862 14.048 36.397 1.00 0.00 O ATOM 304 CB TYR 93 12.455 12.294 36.839 1.00 0.00 C ATOM 305 CG TYR 93 12.126 11.177 35.898 1.00 0.00 C ATOM 306 CD1 TYR 93 13.004 10.824 34.899 1.00 0.00 C ATOM 307 CD2 TYR 93 10.918 10.526 35.990 1.00 0.00 C ATOM 308 CE1 TYR 93 12.701 9.828 34.000 1.00 0.00 C ATOM 309 CE2 TYR 93 10.617 9.517 35.122 1.00 0.00 C ATOM 310 CZ TYR 93 11.500 9.167 34.134 1.00 0.00 C ATOM 311 OH TYR 93 11.177 8.054 33.343 1.00 0.00 H ATOM 312 N ALA 94 10.674 13.563 34.338 1.00 0.00 N ATOM 313 CA ALA 94 9.387 13.586 33.690 1.00 0.00 C ATOM 314 C ALA 94 9.184 12.254 33.054 1.00 0.00 C ATOM 315 O ALA 94 10.066 11.776 32.350 1.00 0.00 O ATOM 316 CB ALA 94 9.260 14.625 32.567 1.00 0.00 C ATOM 317 N GLY 95 8.007 11.631 33.302 1.00 0.00 N ATOM 318 CA GLY 95 7.756 10.271 32.921 1.00 0.00 C ATOM 319 C GLY 95 7.038 10.124 31.607 1.00 0.00 C ATOM 320 O GLY 95 6.701 9.009 31.213 1.00 0.00 O ATOM 321 N ASN 96 6.791 11.226 30.884 1.00 0.00 N ATOM 322 CA ASN 96 6.185 11.153 29.577 1.00 0.00 C ATOM 323 C ASN 96 7.189 10.576 28.631 1.00 0.00 C ATOM 324 O ASN 96 8.341 10.976 28.675 1.00 0.00 O ATOM 325 CB ASN 96 5.874 12.558 29.052 1.00 0.00 C ATOM 326 CG ASN 96 5.086 12.532 27.748 1.00 0.00 C ATOM 327 OD1 ASN 96 5.556 12.131 26.690 1.00 0.00 O ATOM 328 ND2 ASN 96 3.825 13.029 27.794 1.00 0.00 N ATOM 329 N LEU 97 6.780 9.653 27.736 1.00 0.00 N ATOM 330 CA LEU 97 7.652 8.958 26.818 1.00 0.00 C ATOM 331 C LEU 97 8.445 9.862 25.911 1.00 0.00 C ATOM 332 O LEU 97 9.536 9.475 25.493 1.00 0.00 O ATOM 333 CB LEU 97 6.897 7.921 25.952 1.00 0.00 C ATOM 334 CG LEU 97 6.281 6.752 26.773 1.00 0.00 C ATOM 335 CD1 LEU 97 5.305 5.907 25.931 1.00 0.00 C ATOM 336 CD2 LEU 97 7.317 5.832 27.464 1.00 0.00 C ATOM 337 N SER 98 7.955 11.081 25.601 1.00 0.00 N ATOM 338 CA SER 98 8.718 12.000 24.804 1.00 0.00 C ATOM 339 C SER 98 9.816 12.633 25.599 1.00 0.00 C ATOM 340 O SER 98 10.750 13.158 24.998 1.00 0.00 O ATOM 341 CB SER 98 7.907 13.176 24.208 1.00 0.00 C ATOM 342 OG SER 98 7.068 13.801 25.168 1.00 0.00 O ATOM 343 N LEU 99 9.710 12.654 26.942 1.00 0.00 N ATOM 344 CA LEU 99 10.458 13.575 27.739 1.00 0.00 C ATOM 345 C LEU 99 11.376 12.855 28.680 1.00 0.00 C ATOM 346 O LEU 99 12.346 13.464 29.110 1.00 0.00 O ATOM 347 CB LEU 99 9.570 14.474 28.608 1.00 0.00 C ATOM 348 CG LEU 99 8.779 15.560 27.845 1.00 0.00 C ATOM 349 CD1 LEU 99 7.857 16.315 28.819 1.00 0.00 C ATOM 350 CD2 LEU 99 9.697 16.507 27.044 1.00 0.00 C ATOM 351 N ILE 100 11.079 11.588 29.047 1.00 0.00 N ATOM 352 CA ILE 100 11.867 10.701 29.876 1.00 0.00 C ATOM 353 C ILE 100 13.337 10.740 29.654 1.00 0.00 C ATOM 354 O ILE 100 14.071 10.982 30.603 1.00 0.00 O ATOM 355 CB ILE 100 11.372 9.272 29.786 1.00 0.00 C ATOM 356 CG1 ILE 100 10.040 9.159 30.504 1.00 0.00 C ATOM 357 CG2 ILE 100 12.346 8.224 30.377 1.00 0.00 C ATOM 358 CD1 ILE 100 9.256 7.910 30.119 1.00 0.00 C ATOM 359 N PHE 101 13.812 10.443 28.437 1.00 0.00 N ATOM 360 CA PHE 101 15.219 10.285 28.235 1.00 0.00 C ATOM 361 C PHE 101 15.883 11.612 28.419 1.00 0.00 C ATOM 362 O PHE 101 16.980 11.696 28.972 1.00 0.00 O ATOM 363 CB PHE 101 15.498 9.764 26.825 1.00 0.00 C ATOM 364 CG PHE 101 16.953 9.637 26.554 1.00 0.00 C ATOM 365 CD1 PHE 101 17.683 8.589 27.051 1.00 0.00 C ATOM 366 CD2 PHE 101 17.616 10.575 25.806 1.00 0.00 C ATOM 367 CE1 PHE 101 19.033 8.503 26.809 1.00 0.00 C ATOM 368 CE2 PHE 101 18.825 10.260 25.266 1.00 0.00 C ATOM 369 CZ PHE 101 19.579 9.214 25.751 1.00 0.00 C ATOM 370 N ASP 102 15.213 12.685 27.968 1.00 0.00 N ATOM 371 CA ASP 102 15.790 13.992 27.979 1.00 0.00 C ATOM 372 C ASP 102 15.783 14.515 29.376 1.00 0.00 C ATOM 373 O ASP 102 16.664 15.288 29.721 1.00 0.00 O ATOM 374 CB ASP 102 15.060 15.012 27.087 1.00 0.00 C ATOM 375 CG ASP 102 15.430 14.784 25.616 1.00 0.00 C ATOM 376 OD1 ASP 102 16.386 14.017 25.314 1.00 0.00 O ATOM 377 OD2 ASP 102 14.747 15.397 24.755 1.00 0.00 O ATOM 378 N SER 103 14.829 14.106 30.236 1.00 0.00 N ATOM 379 CA SER 103 14.748 14.585 31.588 1.00 0.00 C ATOM 380 C SER 103 15.854 13.973 32.419 1.00 0.00 C ATOM 381 O SER 103 16.209 14.492 33.474 1.00 0.00 O ATOM 382 CB SER 103 13.360 14.312 32.219 1.00 0.00 C ATOM 383 OG SER 103 13.128 12.924 32.406 1.00 0.00 O ATOM 384 N ILE 104 16.466 12.883 31.926 1.00 0.00 N ATOM 385 CA ILE 104 17.448 12.148 32.678 1.00 0.00 C ATOM 386 C ILE 104 18.703 12.820 32.230 1.00 0.00 C ATOM 387 O ILE 104 19.610 13.075 33.019 1.00 0.00 O ATOM 388 CB ILE 104 17.453 10.663 32.365 1.00 0.00 C ATOM 389 CG1 ILE 104 16.200 10.033 33.006 1.00 0.00 C ATOM 390 CG2 ILE 104 18.748 9.941 32.825 1.00 0.00 C ATOM 391 CD1 ILE 104 16.064 8.521 32.806 1.00 0.00 C ATOM 392 N LYS 105 18.767 13.144 30.924 1.00 0.00 N ATOM 393 CA LYS 105 19.764 14.016 30.416 1.00 0.00 C ATOM 394 C LYS 105 19.763 15.359 31.096 1.00 0.00 C ATOM 395 O LYS 105 20.810 15.968 31.181 1.00 0.00 O ATOM 396 CB LYS 105 19.745 14.214 28.897 1.00 0.00 C ATOM 397 CG LYS 105 20.947 14.974 28.326 1.00 0.00 C ATOM 398 CD LYS 105 20.867 15.055 26.815 1.00 0.00 C ATOM 399 CE LYS 105 21.983 15.893 26.197 1.00 0.00 C ATOM 400 NZ LYS 105 21.816 15.926 24.729 1.00 0.00 N ATOM 401 N THR 106 18.629 15.907 31.559 1.00 0.00 N ATOM 402 CA THR 106 18.644 17.148 32.268 1.00 0.00 C ATOM 403 C THR 106 19.241 16.970 33.643 1.00 0.00 C ATOM 404 O THR 106 19.816 17.904 34.203 1.00 0.00 O ATOM 405 CB THR 106 17.253 17.715 32.288 1.00 0.00 C ATOM 406 OG1 THR 106 16.859 17.940 30.940 1.00 0.00 O ATOM 407 CG2 THR 106 17.152 19.031 33.085 1.00 0.00 C ATOM 408 N ASP 107 19.158 15.748 34.192 1.00 0.00 N ATOM 409 CA ASP 107 19.564 15.516 35.554 1.00 0.00 C ATOM 410 C ASP 107 21.049 15.427 35.518 1.00 0.00 C ATOM 411 O ASP 107 21.716 15.891 36.442 1.00 0.00 O ATOM 412 CB ASP 107 19.081 14.193 36.174 1.00 0.00 C ATOM 413 CG ASP 107 19.723 13.973 37.561 1.00 0.00 C ATOM 414 OD1 ASP 107 19.654 14.821 38.495 1.00 0.00 O ATOM 415 OD2 ASP 107 20.301 12.868 37.700 1.00 0.00 O ATOM 416 N ILE 108 21.614 14.853 34.419 1.00 0.00 N ATOM 417 CA ILE 108 23.042 14.693 34.265 1.00 0.00 C ATOM 418 C ILE 108 23.636 16.082 34.204 1.00 0.00 C ATOM 419 O ILE 108 23.006 17.114 34.437 1.00 0.00 O ATOM 420 CB ILE 108 23.458 13.828 33.031 1.00 0.00 C ATOM 421 CG1 ILE 108 24.912 13.296 32.874 1.00 0.00 C ATOM 422 CG2 ILE 108 23.099 14.523 31.736 1.00 0.00 C ATOM 423 CD1 ILE 108 25.080 12.243 31.769 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 164 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.84 72.5 40 16.3 246 ARMSMC SECONDARY STRUCTURE . . 53.84 72.5 40 27.8 144 ARMSMC SURFACE . . . . . . . . 63.34 64.3 28 15.6 180 ARMSMC BURIED . . . . . . . . 17.36 91.7 12 18.2 66 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.65 33.3 18 15.9 113 ARMSSC1 RELIABLE SIDE CHAINS . 89.65 33.3 18 16.5 109 ARMSSC1 SECONDARY STRUCTURE . . 89.65 33.3 18 27.3 66 ARMSSC1 SURFACE . . . . . . . . 93.49 23.1 13 15.1 86 ARMSSC1 BURIED . . . . . . . . 78.79 60.0 5 18.5 27 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.96 40.0 15 16.5 91 ARMSSC2 RELIABLE SIDE CHAINS . 73.40 41.7 12 18.8 64 ARMSSC2 SECONDARY STRUCTURE . . 75.96 40.0 15 27.3 55 ARMSSC2 SURFACE . . . . . . . . 82.40 36.4 11 15.5 71 ARMSSC2 BURIED . . . . . . . . 54.43 50.0 4 20.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 111.72 33.3 3 11.1 27 ARMSSC3 RELIABLE SIDE CHAINS . 111.72 33.3 3 12.0 25 ARMSSC3 SECONDARY STRUCTURE . . 111.72 33.3 3 23.1 13 ARMSSC3 SURFACE . . . . . . . . 111.72 33.3 3 12.5 24 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 12.82 100.0 1 8.3 12 ARMSSC4 RELIABLE SIDE CHAINS . 12.82 100.0 1 8.3 12 ARMSSC4 SECONDARY STRUCTURE . . 12.82 100.0 1 16.7 6 ARMSSC4 SURFACE . . . . . . . . 12.82 100.0 1 10.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.68 (Number of atoms: 21) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.68 21 16.9 124 CRMSCA CRN = ALL/NP . . . . . 0.3657 CRMSCA SECONDARY STRUCTURE . . 7.68 21 29.2 72 CRMSCA SURFACE . . . . . . . . 7.65 15 16.5 91 CRMSCA BURIED . . . . . . . . 7.75 6 18.2 33 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.76 104 16.9 616 CRMSMC SECONDARY STRUCTURE . . 7.76 104 29.1 358 CRMSMC SURFACE . . . . . . . . 7.70 74 16.3 453 CRMSMC BURIED . . . . . . . . 7.93 30 18.4 163 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.88 80 15.8 506 CRMSSC RELIABLE SIDE CHAINS . 8.55 74 16.9 438 CRMSSC SECONDARY STRUCTURE . . 8.88 80 27.3 293 CRMSSC SURFACE . . . . . . . . 9.03 61 16.2 376 CRMSSC BURIED . . . . . . . . 8.39 19 14.6 130 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.25 164 16.4 1002 CRMSALL SECONDARY STRUCTURE . . 8.25 164 28.2 581 CRMSALL SURFACE . . . . . . . . 8.31 121 16.4 740 CRMSALL BURIED . . . . . . . . 8.10 43 16.4 262 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.125 1.000 0.500 21 16.9 124 ERRCA SECONDARY STRUCTURE . . 7.125 1.000 0.500 21 29.2 72 ERRCA SURFACE . . . . . . . . 7.038 1.000 0.500 15 16.5 91 ERRCA BURIED . . . . . . . . 7.342 1.000 0.500 6 18.2 33 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.169 1.000 0.500 104 16.9 616 ERRMC SECONDARY STRUCTURE . . 7.169 1.000 0.500 104 29.1 358 ERRMC SURFACE . . . . . . . . 7.076 1.000 0.500 74 16.3 453 ERRMC BURIED . . . . . . . . 7.399 1.000 0.500 30 18.4 163 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.367 1.000 0.500 80 15.8 506 ERRSC RELIABLE SIDE CHAINS . 8.093 1.000 0.500 74 16.9 438 ERRSC SECONDARY STRUCTURE . . 8.367 1.000 0.500 80 27.3 293 ERRSC SURFACE . . . . . . . . 8.523 1.000 0.500 61 16.2 376 ERRSC BURIED . . . . . . . . 7.868 1.000 0.500 19 14.6 130 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.669 1.000 0.500 164 16.4 1002 ERRALL SECONDARY STRUCTURE . . 7.669 1.000 0.500 164 28.2 581 ERRALL SURFACE . . . . . . . . 7.707 1.000 0.500 121 16.4 740 ERRALL BURIED . . . . . . . . 7.564 1.000 0.500 43 16.4 262 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 4 17 21 124 DISTCA CA (P) 0.00 0.00 1.61 3.23 13.71 124 DISTCA CA (RMS) 0.00 0.00 2.30 3.02 6.40 DISTCA ALL (N) 0 0 8 30 129 164 1002 DISTALL ALL (P) 0.00 0.00 0.80 2.99 12.87 1002 DISTALL ALL (RMS) 0.00 0.00 2.37 3.62 6.73 DISTALL END of the results output