####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 27 ( 108), selected 27 , name T0639AL285_1-D1 # Molecule2: number of CA atoms 124 ( 1002), selected 27 , name T0639-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0639AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 44 - 63 4.91 10.32 LONGEST_CONTINUOUS_SEGMENT: 20 45 - 64 4.73 10.83 LCS_AVERAGE: 14.96 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 47 - 53 1.70 15.79 LCS_AVERAGE: 3.91 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 44 - 48 0.67 17.06 LCS_AVERAGE: 3.20 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 27 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 39 A 39 4 4 14 3 4 4 4 5 6 7 8 9 10 11 12 14 15 15 16 16 17 17 19 LCS_GDT N 40 N 40 4 4 14 3 4 4 4 5 7 8 10 10 10 11 12 14 15 15 16 16 17 17 19 LCS_GDT M 41 M 41 4 4 14 3 4 4 4 4 6 6 10 10 10 11 12 14 15 15 16 16 17 17 19 LCS_GDT K 42 K 42 4 5 14 3 4 4 4 5 7 8 10 10 10 11 12 14 15 15 16 16 17 17 19 LCS_GDT W 43 W 43 4 5 14 3 4 4 4 5 7 8 10 10 10 11 12 14 15 15 16 16 18 20 22 LCS_GDT I 44 I 44 5 5 20 3 5 5 5 5 7 8 10 10 10 12 12 16 19 20 20 21 22 22 22 LCS_GDT K 45 K 45 5 6 20 3 5 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT D 46 D 46 5 6 20 3 5 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT Y 47 Y 47 5 7 20 3 5 5 6 7 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT T 48 T 48 5 7 20 0 5 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT S 49 S 49 4 7 20 2 3 4 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT D 50 D 50 4 7 20 3 3 4 6 8 9 10 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT G 51 G 51 4 7 20 3 3 4 5 7 8 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT N 52 N 52 4 7 20 3 4 5 6 7 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT W 53 W 53 4 7 20 3 4 4 6 7 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT D 54 D 54 4 5 20 3 4 4 5 7 8 9 11 11 12 12 14 16 16 18 20 21 22 22 22 LCS_GDT N 55 N 55 4 4 20 3 4 4 5 6 8 9 11 13 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT E 56 E 56 4 4 20 3 4 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT F 57 F 57 4 4 20 3 4 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT K 58 K 58 4 4 20 3 4 4 4 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT E 59 E 59 4 4 20 3 4 4 5 7 9 10 11 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT D 60 D 60 3 3 20 3 3 3 3 4 9 10 11 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT L 61 L 61 3 3 20 0 3 3 3 4 5 9 11 14 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT K 62 K 62 3 3 20 3 3 3 3 4 4 5 5 11 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT N 63 N 63 3 3 20 3 3 3 3 4 4 6 11 13 15 16 19 19 19 20 20 21 22 22 22 LCS_GDT F 64 F 64 3 3 20 3 3 3 3 3 4 4 5 7 11 13 19 19 19 20 20 21 22 22 22 LCS_GDT L 65 L 65 3 3 11 3 3 3 3 3 4 4 5 7 7 7 12 13 15 20 20 21 22 22 22 LCS_AVERAGE LCS_A: 7.36 ( 3.20 3.91 14.96 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 6 8 9 11 12 14 15 16 19 19 19 20 20 21 22 22 22 GDT PERCENT_AT 2.42 4.03 4.03 4.84 6.45 7.26 8.87 9.68 11.29 12.10 12.90 15.32 15.32 15.32 16.13 16.13 16.94 17.74 17.74 17.74 GDT RMS_LOCAL 0.01 0.67 0.67 1.51 1.91 2.12 2.61 2.69 3.16 3.33 3.65 4.34 4.34 4.34 4.68 4.68 5.00 5.28 5.28 5.28 GDT RMS_ALL_AT 28.68 17.06 17.06 15.53 11.64 11.74 11.36 11.71 11.24 11.25 11.11 10.84 10.84 10.84 10.42 10.42 10.51 10.43 10.43 10.43 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 39 A 39 27.869 1 0.386 0.386 29.558 0.000 0.000 LGA N 40 N 40 23.394 4 0.132 0.132 25.204 0.000 0.000 LGA M 41 M 41 23.342 4 0.042 0.042 23.412 0.000 0.000 LGA K 42 K 42 21.060 5 0.610 0.610 22.213 0.000 0.000 LGA W 43 W 43 13.980 10 0.593 0.593 16.581 0.000 0.000 LGA I 44 I 44 9.565 4 0.527 0.527 10.948 6.786 3.393 LGA K 45 K 45 2.573 5 0.309 0.309 5.234 44.405 19.735 LGA D 46 D 46 2.630 4 0.090 0.090 2.990 69.405 34.702 LGA Y 47 Y 47 2.340 8 0.687 0.687 2.340 77.262 25.754 LGA T 48 T 48 1.513 3 0.571 0.571 4.203 66.310 37.891 LGA S 49 S 49 1.799 2 0.181 0.181 3.255 67.262 44.841 LGA D 50 D 50 2.929 4 0.688 0.688 2.952 62.976 31.488 LGA G 51 G 51 3.394 0 0.594 0.594 4.675 51.071 51.071 LGA N 52 N 52 3.544 4 0.271 0.271 3.841 48.452 24.226 LGA W 53 W 53 3.544 10 0.234 0.234 5.694 32.381 9.252 LGA D 54 D 54 10.043 4 0.251 0.251 10.624 2.143 1.071 LGA N 55 N 55 7.797 4 0.297 0.297 7.830 16.667 8.333 LGA E 56 E 56 1.827 5 0.590 0.590 3.562 69.881 31.058 LGA F 57 F 57 1.764 7 0.567 0.567 1.764 81.548 29.654 LGA K 58 K 58 3.247 5 0.355 0.355 4.359 47.262 21.005 LGA E 59 E 59 6.636 5 0.597 0.597 8.294 14.405 6.402 LGA D 60 D 60 6.435 4 0.599 0.599 6.435 25.476 12.738 LGA L 61 L 61 6.230 4 0.602 0.602 8.255 10.952 5.476 LGA K 62 K 62 12.251 5 0.596 0.596 12.320 0.000 0.000 LGA N 63 N 63 13.335 4 0.420 0.420 13.879 0.000 0.000 LGA F 64 F 64 11.186 7 0.383 0.383 12.731 0.000 0.000 LGA L 65 L 65 16.664 4 0.586 0.586 18.779 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 27 108 108 100.00 234 108 46.15 124 SUMMARY(RMSD_GDC): 8.742 8.575 8.575 6.408 3.210 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 27 124 4.0 12 2.69 8.669 7.911 0.430 LGA_LOCAL RMSD: 2.689 Number of atoms: 12 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.711 Number of assigned atoms: 27 Std_ASGN_ATOMS RMSD: 8.742 Standard rmsd on all 27 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.023381 * X + -0.981790 * Y + 0.188524 * Z + 17.321400 Y_new = -0.068590 * X + -0.189707 * Y + -0.979442 * Z + 3.483446 Z_new = 0.997371 * X + 0.009970 * Y + -0.071777 * Z + 35.029259 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.242262 -1.498267 3.003573 [DEG: -71.1764 -85.8444 172.0921 ] ZXZ: 0.190155 1.642635 1.560800 [DEG: 10.8951 94.1160 89.4273 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0639AL285_1-D1 REMARK 2: T0639-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0639AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 27 124 4.0 12 2.69 7.911 8.74 REMARK ---------------------------------------------------------- MOLECULE T0639AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2jorA ATOM 1 N ALA 39 10.923 6.893 20.953 1.00 0.00 N ATOM 2 CA ALA 39 11.165 8.176 21.675 1.00 0.00 C ATOM 3 C ALA 39 12.338 7.992 22.640 1.00 0.00 C ATOM 4 O ALA 39 13.362 8.636 22.522 1.00 0.00 O ATOM 5 N ASN 40 12.195 7.110 23.592 1.00 0.00 N ATOM 6 CA ASN 40 13.296 6.872 24.565 1.00 0.00 C ATOM 7 C ASN 40 12.948 5.649 25.421 1.00 0.00 C ATOM 8 O ASN 40 11.980 5.657 26.155 1.00 0.00 O ATOM 9 N MET 41 13.719 4.595 25.339 1.00 0.00 N ATOM 10 CA MET 41 13.401 3.392 26.159 1.00 0.00 C ATOM 11 C MET 41 13.640 3.719 27.633 1.00 0.00 C ATOM 12 O MET 41 14.720 4.116 28.021 1.00 0.00 O ATOM 13 N LYS 42 12.640 3.567 28.458 1.00 0.00 N ATOM 14 CA LYS 42 12.822 3.881 29.902 1.00 0.00 C ATOM 15 C LYS 42 13.063 5.395 30.044 1.00 0.00 C ATOM 16 O LYS 42 13.709 6.000 29.212 1.00 0.00 O ATOM 17 N TRP 43 12.556 6.005 31.092 1.00 0.00 N ATOM 18 CA TRP 43 12.760 7.476 31.296 1.00 0.00 C ATOM 19 C TRP 43 13.545 7.689 32.591 1.00 0.00 C ATOM 20 O TRP 43 14.510 8.425 32.622 1.00 0.00 O ATOM 21 N ILE 44 13.128 7.059 33.660 1.00 0.00 N ATOM 22 CA ILE 44 13.838 7.224 34.961 1.00 0.00 C ATOM 23 C ILE 44 13.610 8.641 35.493 1.00 0.00 C ATOM 24 O ILE 44 12.846 9.407 34.945 1.00 0.00 O ATOM 25 N LYS 45 14.286 8.993 36.550 1.00 0.00 N ATOM 26 CA LYS 45 14.137 10.363 37.122 1.00 0.00 C ATOM 27 C LYS 45 15.139 10.540 38.267 1.00 0.00 C ATOM 28 O LYS 45 16.336 10.541 38.060 1.00 0.00 O ATOM 29 N ASP 46 14.661 10.686 39.472 1.00 0.00 N ATOM 30 CA ASP 46 15.585 10.860 40.628 1.00 0.00 C ATOM 31 C ASP 46 14.807 10.673 41.931 1.00 0.00 C ATOM 32 O ASP 46 14.235 11.604 42.461 1.00 0.00 O ATOM 33 N TYR 47 14.790 9.472 42.456 1.00 0.00 N ATOM 34 CA TYR 47 14.060 9.206 43.737 1.00 0.00 C ATOM 35 C TYR 47 15.090 9.124 44.884 1.00 0.00 C ATOM 36 O TYR 47 16.229 8.778 44.640 1.00 0.00 O ATOM 37 N THR 48 14.680 9.425 46.104 1.00 0.00 N ATOM 38 CA THR 48 15.601 9.355 47.255 1.00 0.00 C ATOM 39 C THR 48 16.189 7.939 47.362 1.00 0.00 C ATOM 40 O THR 48 17.383 7.762 47.503 1.00 0.00 O ATOM 41 N SER 49 15.352 6.933 47.299 1.00 0.00 N ATOM 42 CA SER 49 15.839 5.521 47.396 1.00 0.00 C ATOM 43 C SER 49 15.143 4.670 46.331 1.00 0.00 C ATOM 44 O SER 49 15.784 4.049 45.506 1.00 0.00 O ATOM 45 N ASP 50 13.837 4.636 46.340 1.00 0.00 N ATOM 46 CA ASP 50 13.099 3.825 45.327 1.00 0.00 C ATOM 47 C ASP 50 11.594 4.015 45.530 1.00 0.00 C ATOM 48 O ASP 50 11.135 4.247 46.631 1.00 0.00 O ATOM 49 N GLY 51 10.817 3.915 44.483 1.00 0.00 N ATOM 50 CA GLY 51 9.345 4.089 44.639 1.00 0.00 C ATOM 51 C GLY 51 8.686 4.269 43.268 1.00 0.00 C ATOM 52 O GLY 51 7.648 3.702 42.990 1.00 0.00 O ATOM 53 N ASN 52 9.272 5.061 42.410 1.00 0.00 N ATOM 54 CA ASN 52 8.667 5.280 41.065 1.00 0.00 C ATOM 55 C ASN 52 9.634 6.095 40.198 1.00 0.00 C ATOM 56 O ASN 52 10.593 6.654 40.690 1.00 0.00 O ATOM 57 N TRP 53 9.386 6.180 38.910 1.00 0.00 N ATOM 58 CA TRP 53 10.291 6.976 38.022 1.00 0.00 C ATOM 59 C TRP 53 9.679 8.352 37.772 1.00 0.00 C ATOM 60 O TRP 53 10.152 9.097 36.939 1.00 0.00 O ATOM 61 N ASP 54 8.620 8.698 38.452 1.00 0.00 N ATOM 62 CA ASP 54 7.998 10.026 38.197 1.00 0.00 C ATOM 63 C ASP 54 7.694 10.133 36.704 1.00 0.00 C ATOM 64 O ASP 54 7.404 11.192 36.186 1.00 0.00 O ATOM 65 N ASN 55 7.768 9.026 36.006 1.00 0.00 N ATOM 66 CA ASN 55 7.494 9.027 34.539 1.00 0.00 C ATOM 67 C ASN 55 6.765 7.737 34.161 1.00 0.00 C ATOM 68 O ASN 55 5.566 7.635 34.314 1.00 0.00 O ATOM 69 N GLU 56 7.482 6.750 33.678 1.00 0.00 N ATOM 70 CA GLU 56 6.842 5.462 33.293 1.00 0.00 C ATOM 71 C GLU 56 7.897 4.610 32.588 1.00 0.00 C ATOM 72 O GLU 56 8.342 4.929 31.506 1.00 0.00 O ATOM 73 N PHE 57 8.315 3.542 33.195 1.00 0.00 N ATOM 74 CA PHE 57 9.352 2.701 32.549 1.00 0.00 C ATOM 75 C PHE 57 8.842 2.205 31.190 1.00 0.00 C ATOM 76 O PHE 57 7.660 2.231 30.911 1.00 0.00 O ATOM 77 N LYS 58 9.729 1.750 30.348 1.00 0.00 N ATOM 78 CA LYS 58 9.310 1.244 29.006 1.00 0.00 C ATOM 79 C LYS 58 8.492 2.306 28.262 1.00 0.00 C ATOM 80 O LYS 58 7.569 1.990 27.539 1.00 0.00 O ATOM 81 N GLU 59 8.822 3.559 28.419 1.00 0.00 N ATOM 82 CA GLU 59 8.055 4.621 27.703 1.00 0.00 C ATOM 83 C GLU 59 8.079 4.317 26.198 1.00 0.00 C ATOM 84 O GLU 59 9.068 3.851 25.665 1.00 0.00 O ATOM 85 N ASP 60 6.998 4.578 25.513 1.00 0.00 N ATOM 86 CA ASP 60 6.957 4.307 24.047 1.00 0.00 C ATOM 87 C ASP 60 5.658 4.865 23.460 1.00 0.00 C ATOM 88 O ASP 60 4.575 4.434 23.803 1.00 0.00 O ATOM 89 N LEU 61 5.757 5.822 22.578 1.00 0.00 N ATOM 90 CA LEU 61 4.526 6.405 21.969 1.00 0.00 C ATOM 91 C LEU 61 4.916 7.303 20.795 1.00 0.00 C ATOM 92 O LEU 61 6.017 7.810 20.727 1.00 0.00 O ATOM 93 N LYS 62 4.019 7.504 19.866 1.00 0.00 N ATOM 94 CA LYS 62 4.341 8.369 18.697 1.00 0.00 C ATOM 95 C LYS 62 4.316 9.837 19.126 1.00 0.00 C ATOM 96 O LYS 62 3.430 10.271 19.837 1.00 0.00 O ATOM 97 N ASN 63 5.281 10.607 18.701 1.00 0.00 N ATOM 98 CA ASN 63 5.310 12.045 19.086 1.00 0.00 C ATOM 99 C ASN 63 4.356 12.833 18.187 1.00 0.00 C ATOM 100 O ASN 63 4.682 13.896 17.697 1.00 0.00 O ATOM 101 N PHE 64 3.175 12.321 17.968 1.00 0.00 N ATOM 102 CA PHE 64 2.198 13.041 17.105 1.00 0.00 C ATOM 103 C PHE 64 2.864 13.415 15.780 1.00 0.00 C ATOM 104 O PHE 64 3.518 12.604 15.151 1.00 0.00 O ATOM 105 N LEU 65 2.704 14.636 15.348 1.00 0.00 N ATOM 106 CA LEU 65 3.327 15.061 14.064 1.00 0.00 C ATOM 107 C LEU 65 3.332 16.588 13.985 1.00 0.00 C ATOM 108 O LEU 65 2.322 17.207 13.708 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 108 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 105.14 23.1 52 21.1 246 ARMSMC SECONDARY STRUCTURE . . 106.62 20.0 25 17.4 144 ARMSMC SURFACE . . . . . . . . 101.84 21.1 38 21.1 180 ARMSMC BURIED . . . . . . . . 113.59 28.6 14 21.2 66 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 113 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 109 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 66 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 91 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 64 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 55 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 71 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 25 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 13 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 12 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 6 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.74 (Number of atoms: 27) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.74 27 21.8 124 CRMSCA CRN = ALL/NP . . . . . 0.3238 CRMSCA SECONDARY STRUCTURE . . 7.18 13 18.1 72 CRMSCA SURFACE . . . . . . . . 9.30 20 22.0 91 CRMSCA BURIED . . . . . . . . 6.89 7 21.2 33 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.58 108 17.5 616 CRMSMC SECONDARY STRUCTURE . . 7.11 52 14.5 358 CRMSMC SURFACE . . . . . . . . 9.19 80 17.7 453 CRMSMC BURIED . . . . . . . . 6.54 28 17.2 163 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 506 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 438 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 293 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 376 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 130 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.58 108 10.8 1002 CRMSALL SECONDARY STRUCTURE . . 7.11 52 9.0 581 CRMSALL SURFACE . . . . . . . . 9.19 80 10.8 740 CRMSALL BURIED . . . . . . . . 6.54 28 10.7 262 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.969 1.000 0.500 27 21.8 124 ERRCA SECONDARY STRUCTURE . . 6.812 1.000 0.500 13 18.1 72 ERRCA SURFACE . . . . . . . . 8.409 1.000 0.500 20 22.0 91 ERRCA BURIED . . . . . . . . 6.714 1.000 0.500 7 21.2 33 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.876 1.000 0.500 108 17.5 616 ERRMC SECONDARY STRUCTURE . . 6.789 1.000 0.500 52 14.5 358 ERRMC SURFACE . . . . . . . . 8.400 1.000 0.500 80 17.7 453 ERRMC BURIED . . . . . . . . 6.379 1.000 0.500 28 17.2 163 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 506 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 438 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 293 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 376 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 130 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.876 1.000 0.500 108 10.8 1002 ERRALL SECONDARY STRUCTURE . . 6.789 1.000 0.500 52 9.0 581 ERRALL SURFACE . . . . . . . . 8.400 1.000 0.500 80 10.8 740 ERRALL BURIED . . . . . . . . 6.379 1.000 0.500 28 10.7 262 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 5 21 27 124 DISTCA CA (P) 0.00 0.00 0.00 4.03 16.94 124 DISTCA CA (RMS) 0.00 0.00 0.00 4.48 6.62 DISTCA ALL (N) 0 0 0 13 85 108 1002 DISTALL ALL (P) 0.00 0.00 0.00 1.30 8.48 1002 DISTALL ALL (RMS) 0.00 0.00 0.00 4.29 6.62 DISTALL END of the results output