####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 27 ( 223), selected 27 , name T0637TS420_1-D1 # Molecule2: number of CA atoms 135 ( 1066), selected 27 , name T0637-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0637TS420_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 72 - 98 3.07 3.07 LCS_AVERAGE: 20.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 72 - 95 1.96 3.41 LCS_AVERAGE: 16.30 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 76 - 92 0.99 3.75 LONGEST_CONTINUOUS_SEGMENT: 17 78 - 94 0.94 3.58 LCS_AVERAGE: 10.43 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 27 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 72 I 72 3 24 27 0 3 3 3 9 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT K 73 K 73 3 24 27 3 6 13 18 21 21 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT L 74 L 74 16 24 27 4 7 13 18 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT Y 75 Y 75 16 24 27 6 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT T 76 T 76 17 24 27 6 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT T 77 T 77 17 24 27 6 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT N 78 N 78 17 24 27 5 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT F 79 F 79 17 24 27 5 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT T 80 T 80 17 24 27 7 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT E 81 E 81 17 24 27 7 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT S 82 S 82 17 24 27 5 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT E 83 E 83 17 24 27 5 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT L 84 L 84 17 24 27 8 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT K 85 K 85 17 24 27 8 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT D 86 D 86 17 24 27 8 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT L 87 L 87 17 24 27 8 13 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT N 88 N 88 17 24 27 8 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT A 89 A 89 17 24 27 7 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT F 90 F 90 17 24 27 8 13 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT Y 91 Y 91 17 24 27 8 13 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT Q 92 Q 92 17 24 27 8 13 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT S 93 S 93 17 24 27 5 11 17 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT P 94 P 94 17 24 27 5 5 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT L 95 L 95 5 24 27 5 5 5 6 6 7 10 22 24 24 25 26 26 27 27 27 27 27 27 27 LCS_GDT G 96 G 96 5 6 27 5 5 5 6 6 7 8 10 11 14 20 26 26 27 27 27 27 27 27 27 LCS_GDT K 97 K 97 5 6 27 5 5 5 6 6 7 7 10 11 14 19 24 26 27 27 27 27 27 27 27 LCS_GDT K 98 K 98 4 6 27 0 3 5 8 11 14 15 17 19 23 25 26 26 27 27 27 27 27 27 27 LCS_AVERAGE LCS_A: 15.57 ( 10.43 16.30 20.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 14 19 20 21 22 23 23 24 24 25 26 26 27 27 27 27 27 27 27 GDT PERCENT_AT 5.93 10.37 14.07 14.81 15.56 16.30 17.04 17.04 17.78 17.78 18.52 19.26 19.26 20.00 20.00 20.00 20.00 20.00 20.00 20.00 GDT RMS_LOCAL 0.26 0.74 1.06 1.11 1.24 1.48 1.60 1.60 1.96 1.96 2.46 2.77 2.77 3.07 3.07 3.07 3.07 3.07 3.07 3.07 GDT RMS_ALL_AT 3.78 4.28 3.72 3.61 3.66 3.63 3.58 3.58 3.41 3.41 3.18 3.11 3.11 3.07 3.07 3.07 3.07 3.07 3.07 3.07 # Checking swapping # possible swapping detected: E 81 E 81 # possible swapping detected: E 83 E 83 # possible swapping detected: F 90 F 90 # possible swapping detected: Y 91 Y 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 72 I 72 3.412 0 0.541 0.835 4.662 43.690 51.429 LGA K 73 K 73 3.016 0 0.608 1.580 12.979 54.048 30.370 LGA L 74 L 74 3.356 0 0.594 1.354 9.660 65.238 36.607 LGA Y 75 Y 75 1.436 0 0.041 0.412 5.254 77.262 60.000 LGA T 76 T 76 1.658 0 0.081 1.129 4.311 72.857 64.490 LGA T 77 T 77 1.822 0 0.161 1.046 3.666 75.000 69.932 LGA N 78 N 78 0.916 0 0.136 1.194 3.991 83.810 72.143 LGA F 79 F 79 1.301 0 0.079 0.284 3.701 83.690 65.065 LGA T 80 T 80 1.415 0 0.112 1.202 3.857 81.429 74.762 LGA E 81 E 81 0.888 0 0.035 0.827 3.315 88.214 72.275 LGA S 82 S 82 1.049 0 0.037 0.081 1.455 83.690 82.937 LGA E 83 E 83 1.165 0 0.052 1.137 6.096 85.952 62.487 LGA L 84 L 84 0.773 0 0.086 0.888 2.471 90.476 85.060 LGA K 85 K 85 0.999 0 0.015 0.415 3.543 90.476 74.868 LGA D 86 D 86 0.423 0 0.093 0.104 0.713 97.619 95.238 LGA L 87 L 87 0.648 0 0.029 0.969 4.216 92.857 77.440 LGA N 88 N 88 0.936 0 0.058 1.349 4.189 88.214 76.131 LGA A 89 A 89 1.263 0 0.027 0.057 1.558 85.952 83.333 LGA F 90 F 90 0.970 0 0.032 0.246 3.993 88.214 67.576 LGA Y 91 Y 91 1.106 0 0.192 1.050 6.911 79.524 55.000 LGA Q 92 Q 92 0.481 0 0.074 0.411 2.538 97.619 84.127 LGA S 93 S 93 1.592 0 0.585 0.611 3.584 67.619 65.397 LGA P 94 P 94 1.280 0 0.154 0.161 4.936 71.190 58.503 LGA L 95 L 95 6.429 0 0.099 1.396 11.189 16.429 8.631 LGA G 96 G 96 8.852 0 0.019 0.019 11.888 4.167 4.167 LGA K 97 K 97 9.673 0 0.584 1.387 13.372 1.667 0.741 LGA K 98 K 98 8.630 0 0.059 0.241 12.270 1.429 17.143 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 27 108 108 100.00 222 222 100.00 135 SUMMARY(RMSD_GDC): 3.074 3.206 4.034 13.840 11.821 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 27 135 4.0 23 1.60 15.556 16.352 1.350 LGA_LOCAL RMSD: 1.604 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.584 Number of assigned atoms: 27 Std_ASGN_ATOMS RMSD: 3.074 Standard rmsd on all 27 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.712883 * X + 0.584992 * Y + -0.386759 * Z + 59.904022 Y_new = 0.488501 * X + 0.809925 * Y + 0.324635 * Z + 32.249371 Z_new = 0.503155 * X + 0.042495 * Y + -0.863151 * Z + 10.824916 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.540837 -0.527245 3.092400 [DEG: 145.5792 -30.2089 177.1815 ] ZXZ: -2.269088 2.612273 1.486540 [DEG: -130.0092 149.6722 85.1724 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0637TS420_1-D1 REMARK 2: T0637-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0637TS420_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 27 135 4.0 23 1.60 16.352 3.07 REMARK ---------------------------------------------------------- MOLECULE T0637TS420_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0637 REMARK MODEL 1 REMARK PARENT 3dr0_A ATOM 1 N ILE 72 38.666 27.337 13.126 1.00 0.00 N ATOM 2 CA ILE 72 37.789 27.581 14.295 1.00 0.00 C ATOM 3 CB ILE 72 38.410 27.002 15.534 1.00 0.00 C ATOM 4 CG2 ILE 72 39.672 27.823 15.845 1.00 0.00 C ATOM 5 CG1 ILE 72 37.399 26.946 16.692 1.00 0.00 C ATOM 6 CD1 ILE 72 37.872 26.085 17.863 1.00 0.00 C ATOM 7 C ILE 72 37.602 29.048 14.494 1.00 0.00 C ATOM 8 O ILE 72 38.419 29.853 14.047 1.00 0.00 O ATOM 9 N LYS 73 36.496 29.436 15.158 1.00 0.00 N ATOM 10 CA LYS 73 36.249 30.828 15.395 1.00 0.00 C ATOM 11 CB LYS 73 34.796 31.186 15.763 1.00 0.00 C ATOM 12 CG LYS 73 33.786 31.024 14.623 1.00 0.00 C ATOM 13 CD LYS 73 33.417 29.573 14.309 1.00 0.00 C ATOM 14 CE LYS 73 32.238 29.043 15.127 1.00 0.00 C ATOM 15 NZ LYS 73 31.925 27.661 14.701 1.00 0.00 N ATOM 16 C LYS 73 37.105 31.241 16.541 1.00 0.00 C ATOM 17 O LYS 73 37.569 30.409 17.317 1.00 0.00 O ATOM 18 N LEU 74 37.350 32.562 16.662 1.00 0.00 N ATOM 19 CA LEU 74 38.191 33.023 17.723 1.00 0.00 C ATOM 20 CB LEU 74 38.871 34.368 17.420 1.00 0.00 C ATOM 21 CG LEU 74 39.762 34.348 16.166 1.00 0.00 C ATOM 22 CD1 LEU 74 40.403 35.724 15.922 1.00 0.00 C ATOM 23 CD2 LEU 74 40.792 33.208 16.220 1.00 0.00 C ATOM 24 C LEU 74 37.326 33.241 18.921 1.00 0.00 C ATOM 25 O LEU 74 36.588 34.221 19.008 1.00 0.00 O ATOM 26 N TYR 75 37.386 32.282 19.859 1.00 0.00 N ATOM 27 CA TYR 75 36.686 32.325 21.106 1.00 0.00 C ATOM 28 CB TYR 75 36.721 30.977 21.835 1.00 0.00 C ATOM 29 CG TYR 75 36.167 30.007 20.852 1.00 0.00 C ATOM 30 CD1 TYR 75 34.808 29.837 20.699 1.00 0.00 C ATOM 31 CD2 TYR 75 37.027 29.279 20.066 1.00 0.00 C ATOM 32 CE1 TYR 75 34.322 28.940 19.777 1.00 0.00 C ATOM 33 CE2 TYR 75 36.546 28.383 19.144 1.00 0.00 C ATOM 34 CZ TYR 75 35.192 28.212 18.997 1.00 0.00 C ATOM 35 OH TYR 75 34.701 27.292 18.047 1.00 0.00 O ATOM 36 C TYR 75 37.351 33.341 21.977 1.00 0.00 C ATOM 37 O TYR 75 36.710 34.034 22.762 1.00 0.00 O ATOM 38 N THR 76 38.684 33.454 21.839 1.00 0.00 N ATOM 39 CA THR 76 39.468 34.266 22.718 1.00 0.00 C ATOM 40 CB THR 76 40.911 34.304 22.315 1.00 0.00 C ATOM 41 OG1 THR 76 41.448 32.988 22.311 1.00 0.00 O ATOM 42 CG2 THR 76 41.674 35.193 23.312 1.00 0.00 C ATOM 43 C THR 76 38.955 35.670 22.720 1.00 0.00 C ATOM 44 O THR 76 38.850 36.290 23.776 1.00 0.00 O ATOM 45 N THR 77 38.613 36.223 21.548 1.00 0.00 N ATOM 46 CA THR 77 38.179 37.590 21.537 1.00 0.00 C ATOM 47 CB THR 77 37.952 38.104 20.143 1.00 0.00 C ATOM 48 OG1 THR 77 37.643 39.490 20.173 1.00 0.00 O ATOM 49 CG2 THR 77 36.809 37.308 19.495 1.00 0.00 C ATOM 50 C THR 77 36.913 37.753 22.329 1.00 0.00 C ATOM 51 O THR 77 36.793 38.682 23.127 1.00 0.00 O ATOM 52 N ASN 78 35.934 36.849 22.136 1.00 0.00 N ATOM 53 CA ASN 78 34.661 36.984 22.785 1.00 0.00 C ATOM 54 CB ASN 78 33.580 36.060 22.188 1.00 0.00 C ATOM 55 CG ASN 78 34.111 34.635 22.135 1.00 0.00 C ATOM 56 OD1 ASN 78 34.604 34.196 21.099 1.00 0.00 O ATOM 57 ND2 ASN 78 34.028 33.891 23.269 1.00 0.00 N ATOM 58 C ASN 78 34.734 36.799 24.270 1.00 0.00 C ATOM 59 O ASN 78 34.190 37.616 25.011 1.00 0.00 O ATOM 60 N PHE 79 35.424 35.754 24.766 1.00 0.00 N ATOM 61 CA PHE 79 35.391 35.567 26.188 1.00 0.00 C ATOM 62 CB PHE 79 34.558 34.358 26.648 1.00 0.00 C ATOM 63 CG PHE 79 33.135 34.797 26.612 1.00 0.00 C ATOM 64 CD1 PHE 79 32.392 34.743 25.455 1.00 0.00 C ATOM 65 CD2 PHE 79 32.542 35.277 27.755 1.00 0.00 C ATOM 66 CE1 PHE 79 31.082 35.153 25.438 1.00 0.00 C ATOM 67 CE2 PHE 79 31.232 35.691 27.746 1.00 0.00 C ATOM 68 CZ PHE 79 30.497 35.629 26.586 1.00 0.00 C ATOM 69 C PHE 79 36.763 35.449 26.752 1.00 0.00 C ATOM 70 O PHE 79 37.751 35.311 26.033 1.00 0.00 O ATOM 71 N THR 80 36.838 35.522 28.095 1.00 0.00 N ATOM 72 CA THR 80 38.095 35.472 28.772 1.00 0.00 C ATOM 73 CB THR 80 37.987 35.756 30.241 1.00 0.00 C ATOM 74 OG1 THR 80 39.278 35.840 30.826 1.00 0.00 O ATOM 75 CG2 THR 80 37.176 34.625 30.892 1.00 0.00 C ATOM 76 C THR 80 38.661 34.102 28.613 1.00 0.00 C ATOM 77 O THR 80 37.939 33.120 28.454 1.00 0.00 O ATOM 78 N GLU 81 40.003 34.020 28.662 1.00 0.00 N ATOM 79 CA GLU 81 40.710 32.791 28.488 1.00 0.00 C ATOM 80 CB GLU 81 42.230 32.996 28.551 1.00 0.00 C ATOM 81 CG GLU 81 42.758 33.893 27.428 1.00 0.00 C ATOM 82 CD GLU 81 44.224 34.186 27.703 1.00 0.00 C ATOM 83 OE1 GLU 81 44.798 33.521 28.607 1.00 0.00 O ATOM 84 OE2 GLU 81 44.790 35.081 27.019 1.00 0.00 O ATOM 85 C GLU 81 40.314 31.887 29.606 1.00 0.00 C ATOM 86 O GLU 81 40.171 30.679 29.423 1.00 0.00 O ATOM 87 N SER 82 40.125 32.463 30.806 1.00 0.00 N ATOM 88 CA SER 82 39.750 31.675 31.941 1.00 0.00 C ATOM 89 CB SER 82 39.605 32.509 33.228 1.00 0.00 C ATOM 90 OG SER 82 39.234 31.673 34.315 1.00 0.00 O ATOM 91 C SER 82 38.417 31.065 31.652 1.00 0.00 C ATOM 92 O SER 82 38.158 29.916 32.011 1.00 0.00 O ATOM 93 N GLU 83 37.538 31.814 30.963 1.00 0.00 N ATOM 94 CA GLU 83 36.212 31.332 30.714 1.00 0.00 C ATOM 95 CB GLU 83 35.339 32.366 29.975 1.00 0.00 C ATOM 96 CG GLU 83 33.834 32.087 30.033 1.00 0.00 C ATOM 97 CD GLU 83 33.464 31.066 28.966 1.00 0.00 C ATOM 98 OE1 GLU 83 34.325 30.783 28.091 1.00 0.00 O ATOM 99 OE2 GLU 83 32.311 30.557 29.012 1.00 0.00 O ATOM 100 C GLU 83 36.291 30.092 29.878 1.00 0.00 C ATOM 101 O GLU 83 35.616 29.106 30.168 1.00 0.00 O ATOM 102 N LEU 84 37.133 30.095 28.826 1.00 0.00 N ATOM 103 CA LEU 84 37.209 28.938 27.978 1.00 0.00 C ATOM 104 CB LEU 84 38.173 29.096 26.789 1.00 0.00 C ATOM 105 CG LEU 84 37.716 30.089 25.705 1.00 0.00 C ATOM 106 CD1 LEU 84 37.600 31.516 26.256 1.00 0.00 C ATOM 107 CD2 LEU 84 38.627 30.004 24.470 1.00 0.00 C ATOM 108 C LEU 84 37.725 27.782 28.768 1.00 0.00 C ATOM 109 O LEU 84 37.171 26.686 28.715 1.00 0.00 O ATOM 110 N LYS 85 38.805 28.003 29.540 1.00 0.00 N ATOM 111 CA LYS 85 39.403 26.919 30.261 1.00 0.00 C ATOM 112 CB LYS 85 40.706 27.314 30.980 1.00 0.00 C ATOM 113 CG LYS 85 41.913 27.391 30.044 1.00 0.00 C ATOM 114 CD LYS 85 43.109 28.139 30.635 1.00 0.00 C ATOM 115 CE LYS 85 44.412 27.919 29.864 1.00 0.00 C ATOM 116 NZ LYS 85 44.243 28.309 28.445 1.00 0.00 N ATOM 117 C LYS 85 38.456 26.389 31.287 1.00 0.00 C ATOM 118 O LYS 85 38.323 25.178 31.446 1.00 0.00 O ATOM 119 N ASP 86 37.758 27.283 32.010 1.00 0.00 N ATOM 120 CA ASP 86 36.899 26.834 33.066 1.00 0.00 C ATOM 121 CB ASP 86 36.221 27.990 33.818 1.00 0.00 C ATOM 122 CG ASP 86 37.294 28.746 34.586 1.00 0.00 C ATOM 123 OD1 ASP 86 38.481 28.328 34.508 1.00 0.00 O ATOM 124 OD2 ASP 86 36.942 29.750 35.260 1.00 0.00 O ATOM 125 C ASP 86 35.805 25.991 32.501 1.00 0.00 C ATOM 126 O ASP 86 35.517 24.913 33.018 1.00 0.00 O ATOM 127 N LEU 87 35.181 26.454 31.402 1.00 0.00 N ATOM 128 CA LEU 87 34.062 25.748 30.856 1.00 0.00 C ATOM 129 CB LEU 87 33.434 26.490 29.659 1.00 0.00 C ATOM 130 CG LEU 87 32.129 25.865 29.125 1.00 0.00 C ATOM 131 CD1 LEU 87 32.364 24.516 28.425 1.00 0.00 C ATOM 132 CD2 LEU 87 31.077 25.782 30.241 1.00 0.00 C ATOM 133 C LEU 87 34.540 24.409 30.403 1.00 0.00 C ATOM 134 O LEU 87 33.902 23.387 30.654 1.00 0.00 O ATOM 135 N ASN 88 35.708 24.386 29.738 1.00 0.00 N ATOM 136 CA ASN 88 36.236 23.171 29.196 1.00 0.00 C ATOM 137 CB ASN 88 37.600 23.411 28.521 1.00 0.00 C ATOM 138 CG ASN 88 37.953 22.234 27.628 1.00 0.00 C ATOM 139 OD1 ASN 88 39.028 22.209 27.028 1.00 0.00 O ATOM 140 ND2 ASN 88 37.031 21.241 27.518 1.00 0.00 N ATOM 141 C ASN 88 36.453 22.210 30.321 1.00 0.00 C ATOM 142 O ASN 88 36.010 21.064 30.268 1.00 0.00 O ATOM 143 N ALA 89 37.120 22.680 31.391 1.00 0.00 N ATOM 144 CA ALA 89 37.436 21.847 32.514 1.00 0.00 C ATOM 145 CB ALA 89 38.260 22.582 33.587 1.00 0.00 C ATOM 146 C ALA 89 36.173 21.395 33.167 1.00 0.00 C ATOM 147 O ALA 89 36.043 20.235 33.556 1.00 0.00 O ATOM 148 N PHE 90 35.196 22.310 33.286 1.00 0.00 N ATOM 149 CA PHE 90 33.992 22.019 34.001 1.00 0.00 C ATOM 150 CB PHE 90 33.023 23.213 34.039 1.00 0.00 C ATOM 151 CG PHE 90 31.962 22.886 35.029 1.00 0.00 C ATOM 152 CD1 PHE 90 32.142 23.187 36.361 1.00 0.00 C ATOM 153 CD2 PHE 90 30.794 22.272 34.638 1.00 0.00 C ATOM 154 CE1 PHE 90 31.171 22.892 37.288 1.00 0.00 C ATOM 155 CE2 PHE 90 29.820 21.974 35.562 1.00 0.00 C ATOM 156 CZ PHE 90 30.006 22.281 36.888 1.00 0.00 C ATOM 157 C PHE 90 33.289 20.888 33.332 1.00 0.00 C ATOM 158 O PHE 90 32.856 19.951 33.993 1.00 0.00 O ATOM 159 N TYR 91 33.178 20.931 31.995 1.00 0.00 N ATOM 160 CA TYR 91 32.453 19.932 31.263 1.00 0.00 C ATOM 161 CB TYR 91 32.451 20.247 29.757 1.00 0.00 C ATOM 162 CG TYR 91 31.447 19.382 29.076 1.00 0.00 C ATOM 163 CD1 TYR 91 30.119 19.740 29.082 1.00 0.00 C ATOM 164 CD2 TYR 91 31.822 18.230 28.428 1.00 0.00 C ATOM 165 CE1 TYR 91 29.174 18.962 28.455 1.00 0.00 C ATOM 166 CE2 TYR 91 30.882 17.447 27.800 1.00 0.00 C ATOM 167 CZ TYR 91 29.557 17.811 27.814 1.00 0.00 C ATOM 168 OH TYR 91 28.597 17.004 27.166 1.00 0.00 O ATOM 169 C TYR 91 33.137 18.616 31.472 1.00 0.00 C ATOM 170 O TYR 91 32.498 17.595 31.725 1.00 0.00 O ATOM 171 N GLN 92 34.479 18.627 31.403 1.00 0.00 N ATOM 172 CA GLN 92 35.277 17.443 31.520 1.00 0.00 C ATOM 173 CB GLN 92 36.781 17.702 31.325 1.00 0.00 C ATOM 174 CG GLN 92 37.146 18.094 29.893 1.00 0.00 C ATOM 175 CD GLN 92 38.660 18.229 29.813 1.00 0.00 C ATOM 176 OE1 GLN 92 39.225 19.252 30.189 1.00 0.00 O ATOM 177 NE2 GLN 92 39.337 17.160 29.313 1.00 0.00 N ATOM 178 C GLN 92 35.106 16.837 32.876 1.00 0.00 C ATOM 179 O GLN 92 35.144 15.617 33.013 1.00 0.00 O ATOM 180 N SER 93 34.909 17.675 33.913 1.00 0.00 N ATOM 181 CA SER 93 34.847 17.165 35.255 1.00 0.00 C ATOM 182 CB SER 93 34.558 18.256 36.306 1.00 0.00 C ATOM 183 OG SER 93 35.617 19.201 36.333 1.00 0.00 O ATOM 184 C SER 93 33.799 16.095 35.351 1.00 0.00 C ATOM 185 O SER 93 34.096 15.022 35.875 1.00 0.00 O ATOM 186 N PRO 94 32.598 16.284 34.881 1.00 0.00 N ATOM 187 CA PRO 94 31.681 15.187 34.967 1.00 0.00 C ATOM 188 CD PRO 94 31.901 17.544 35.055 1.00 0.00 C ATOM 189 CB PRO 94 30.312 15.763 34.625 1.00 0.00 C ATOM 190 CG PRO 94 30.406 17.204 35.150 1.00 0.00 C ATOM 191 C PRO 94 32.111 14.024 34.137 1.00 0.00 C ATOM 192 O PRO 94 31.771 12.895 34.483 1.00 0.00 O ATOM 193 N LEU 95 32.829 14.268 33.025 1.00 0.00 N ATOM 194 CA LEU 95 33.271 13.161 32.230 1.00 0.00 C ATOM 195 CB LEU 95 33.977 13.578 30.926 1.00 0.00 C ATOM 196 CG LEU 95 33.058 14.295 29.921 1.00 0.00 C ATOM 197 CD1 LEU 95 33.807 14.647 28.624 1.00 0.00 C ATOM 198 CD2 LEU 95 31.769 13.493 29.674 1.00 0.00 C ATOM 199 C LEU 95 34.264 12.383 33.032 1.00 0.00 C ATOM 200 O LEU 95 34.225 11.152 33.069 1.00 0.00 O ATOM 201 N GLY 96 35.176 13.093 33.721 1.00 0.00 N ATOM 202 CA GLY 96 36.231 12.430 34.430 1.00 0.00 C ATOM 203 C GLY 96 35.657 11.550 35.487 1.00 0.00 C ATOM 204 O GLY 96 36.057 10.394 35.620 1.00 0.00 O ATOM 205 N LYS 97 34.707 12.065 36.287 1.00 0.00 N ATOM 206 CA LYS 97 34.142 11.198 37.272 1.00 0.00 C ATOM 207 CB LYS 97 34.756 11.319 38.678 1.00 0.00 C ATOM 208 CG LYS 97 34.231 12.516 39.471 1.00 0.00 C ATOM 209 CD LYS 97 34.536 12.430 40.969 1.00 0.00 C ATOM 210 CE LYS 97 33.815 13.490 41.804 1.00 0.00 C ATOM 211 NZ LYS 97 33.986 13.200 43.243 1.00 0.00 N ATOM 212 C LYS 97 32.709 11.572 37.412 1.00 0.00 C ATOM 213 O LYS 97 32.335 12.731 37.247 1.00 0.00 O ATOM 214 N LYS 98 31.857 10.576 37.702 1.00 0.00 N ATOM 215 CA LYS 98 30.470 10.857 37.891 1.00 0.00 C ATOM 216 CB LYS 98 29.581 10.304 36.764 1.00 0.00 C ATOM 217 CG LYS 98 28.109 10.687 36.912 1.00 0.00 C ATOM 218 CD LYS 98 27.284 10.482 35.638 1.00 0.00 C ATOM 219 CE LYS 98 25.813 10.881 35.792 1.00 0.00 C ATOM 220 NZ LYS 98 25.088 10.667 34.518 1.00 0.00 N ATOM 221 C LYS 98 30.068 10.154 39.182 1.00 0.00 C ATOM 222 O LYS 98 29.645 10.862 40.135 1.00 0.00 O ATOM 223 OXT LYS 98 30.180 8.899 39.235 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 222 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.84 78.8 52 19.4 268 ARMSMC SECONDARY STRUCTURE . . 51.01 81.0 42 17.9 234 ARMSMC SURFACE . . . . . . . . 51.44 77.8 45 19.4 232 ARMSMC BURIED . . . . . . . . 54.35 85.7 7 19.4 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.57 40.0 25 22.1 113 ARMSSC1 RELIABLE SIDE CHAINS . 86.57 40.0 25 23.8 105 ARMSSC1 SECONDARY STRUCTURE . . 83.09 40.0 20 20.0 100 ARMSSC1 SURFACE . . . . . . . . 87.00 40.9 22 22.0 100 ARMSSC1 BURIED . . . . . . . . 83.36 33.3 3 23.1 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.18 70.0 20 21.5 93 ARMSSC2 RELIABLE SIDE CHAINS . 33.08 92.9 14 19.4 72 ARMSSC2 SECONDARY STRUCTURE . . 70.43 66.7 18 21.2 85 ARMSSC2 SURFACE . . . . . . . . 56.70 76.5 17 20.7 82 ARMSSC2 BURIED . . . . . . . . 108.96 33.3 3 27.3 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 56.47 57.1 7 14.9 47 ARMSSC3 RELIABLE SIDE CHAINS . 56.52 66.7 6 17.1 35 ARMSSC3 SECONDARY STRUCTURE . . 56.47 57.1 7 15.9 44 ARMSSC3 SURFACE . . . . . . . . 56.47 57.1 7 15.2 46 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.51 50.0 4 20.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 61.51 50.0 4 20.0 20 ARMSSC4 SECONDARY STRUCTURE . . 61.51 50.0 4 21.1 19 ARMSSC4 SURFACE . . . . . . . . 61.51 50.0 4 20.0 20 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 3.07 (Number of atoms: 27) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 3.07 27 20.0 135 CRMSCA CRN = ALL/NP . . . . . 0.1138 CRMSCA SECONDARY STRUCTURE . . 3.26 22 18.8 117 CRMSCA SURFACE . . . . . . . . 2.92 23 19.7 117 CRMSCA BURIED . . . . . . . . 3.84 4 22.2 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.25 134 19.9 672 CRMSMC SECONDARY STRUCTURE . . 3.46 109 18.7 584 CRMSMC SURFACE . . . . . . . . 3.13 115 19.7 584 CRMSMC BURIED . . . . . . . . 3.93 19 21.6 88 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.69 114 21.7 526 CRMSSC RELIABLE SIDE CHAINS . 4.46 100 22.6 442 CRMSSC SECONDARY STRUCTURE . . 4.91 95 20.2 471 CRMSSC SURFACE . . . . . . . . 4.86 102 22.1 462 CRMSSC BURIED . . . . . . . . 2.80 12 18.8 64 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.04 222 20.8 1066 CRMSALL SECONDARY STRUCTURE . . 4.26 183 19.5 939 CRMSALL SURFACE . . . . . . . . 4.09 194 20.9 930 CRMSALL BURIED . . . . . . . . 3.65 28 20.6 136 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.544 1.000 0.500 27 20.0 135 ERRCA SECONDARY STRUCTURE . . 2.685 1.000 0.500 22 18.8 117 ERRCA SURFACE . . . . . . . . 2.406 1.000 0.500 23 19.7 117 ERRCA BURIED . . . . . . . . 3.336 1.000 0.500 4 22.2 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.600 1.000 0.500 134 19.9 672 ERRMC SECONDARY STRUCTURE . . 2.743 1.000 0.500 109 18.7 584 ERRMC SURFACE . . . . . . . . 2.485 1.000 0.500 115 19.7 584 ERRMC BURIED . . . . . . . . 3.295 1.000 0.500 19 21.6 88 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.826 1.000 0.500 114 21.7 526 ERRSC RELIABLE SIDE CHAINS . 3.640 1.000 0.500 100 22.6 442 ERRSC SECONDARY STRUCTURE . . 3.965 1.000 0.500 95 20.2 471 ERRSC SURFACE . . . . . . . . 3.974 1.000 0.500 102 22.1 462 ERRSC BURIED . . . . . . . . 2.565 1.000 0.500 12 18.8 64 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.215 1.000 0.500 222 20.8 1066 ERRALL SECONDARY STRUCTURE . . 3.364 1.000 0.500 183 19.5 939 ERRALL SURFACE . . . . . . . . 3.230 1.000 0.500 194 20.9 930 ERRALL BURIED . . . . . . . . 3.115 1.000 0.500 28 20.6 136 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 4 11 19 24 27 27 135 DISTCA CA (P) 2.96 8.15 14.07 17.78 20.00 135 DISTCA CA (RMS) 0.73 1.17 1.75 2.34 3.07 DISTCA ALL (N) 30 77 134 184 217 222 1066 DISTALL ALL (P) 2.81 7.22 12.57 17.26 20.36 1066 DISTALL ALL (RMS) 0.78 1.30 1.87 2.54 3.70 DISTALL END of the results output