####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 36 ( 297), selected 36 , name T0637TS171_1-D1 # Molecule2: number of CA atoms 135 ( 1066), selected 36 , name T0637-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0637TS171_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 74 - 96 4.96 14.41 LONGEST_CONTINUOUS_SEGMENT: 23 75 - 97 4.79 14.20 LONGEST_CONTINUOUS_SEGMENT: 23 78 - 100 4.65 12.85 LONGEST_CONTINUOUS_SEGMENT: 23 79 - 101 4.84 12.92 LCS_AVERAGE: 16.30 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 83 - 97 1.90 14.13 LCS_AVERAGE: 6.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 83 - 93 0.58 15.12 LCS_AVERAGE: 4.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 36 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 72 I 72 3 3 21 3 3 3 3 4 4 4 5 6 7 11 12 12 18 20 21 23 24 25 26 LCS_GDT K 73 K 73 3 3 22 3 3 3 3 4 4 4 5 5 14 14 16 18 20 21 23 23 24 25 26 LCS_GDT L 74 L 74 3 3 23 3 3 3 3 4 4 5 9 13 14 15 17 18 21 22 23 24 24 25 26 LCS_GDT Y 75 Y 75 3 3 23 3 3 3 3 4 4 5 9 13 14 16 18 19 21 22 23 24 24 25 26 LCS_GDT T 76 T 76 3 4 23 0 3 3 3 4 4 5 9 13 14 15 17 18 21 22 23 24 24 25 26 LCS_GDT T 77 T 77 3 6 23 3 3 3 4 6 8 10 11 13 14 16 18 19 21 22 23 24 24 25 26 LCS_GDT N 78 N 78 4 6 23 4 4 4 5 8 10 11 13 15 17 19 20 20 22 23 23 24 24 25 26 LCS_GDT F 79 F 79 4 6 23 4 4 4 6 8 11 14 15 17 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT T 80 T 80 4 6 23 4 4 4 6 8 11 14 15 17 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT E 81 E 81 4 6 23 4 4 4 5 7 11 14 15 17 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT S 82 S 82 4 12 23 3 4 4 5 8 13 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT E 83 E 83 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT L 84 L 84 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT K 85 K 85 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT D 86 D 86 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT L 87 L 87 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT N 88 N 88 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT A 89 A 89 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT F 90 F 90 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT Y 91 Y 91 11 15 23 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT Q 92 Q 92 11 15 23 7 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT S 93 S 93 11 15 23 4 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT P 94 P 94 4 15 23 3 4 4 4 12 13 14 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT L 95 L 95 4 15 23 3 4 7 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT G 96 G 96 4 15 23 3 4 4 4 8 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT K 97 K 97 3 15 23 3 4 7 11 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 LCS_GDT K 98 K 98 3 4 23 3 4 4 5 6 7 10 13 18 18 19 20 21 22 23 23 23 24 25 25 LCS_GDT V 99 V 99 3 4 23 3 3 4 5 6 6 8 9 13 16 19 20 21 22 23 23 23 24 25 25 LCS_GDT L 100 L 100 3 4 23 3 3 4 4 5 7 10 13 18 18 19 20 21 22 23 23 23 24 25 25 LCS_GDT E 101 E 101 3 4 23 3 3 4 4 4 5 6 8 11 13 15 17 20 21 22 23 23 24 24 25 LCS_GDT K 102 K 102 3 5 21 3 3 4 4 4 5 6 8 11 12 14 15 16 18 20 21 22 23 24 25 LCS_GDT M 103 M 103 4 5 17 4 4 5 5 5 5 6 8 11 12 14 15 16 18 20 21 21 23 23 25 LCS_GDT P 104 P 104 4 5 17 4 4 5 5 5 5 6 8 10 12 14 15 16 17 20 21 21 22 22 23 LCS_GDT R 105 R 105 4 5 17 4 4 5 5 5 5 6 8 11 12 13 14 16 17 18 20 20 22 22 22 LCS_GDT L 106 L 106 4 5 17 4 4 5 5 5 5 6 8 11 12 14 15 16 18 20 21 21 22 22 22 LCS_GDT T 107 T 107 4 5 16 0 3 5 5 5 5 5 5 6 6 8 15 16 18 20 21 21 22 22 23 LCS_AVERAGE LCS_A: 9.12 ( 4.30 6.77 16.30 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 11 11 12 13 14 15 16 18 19 19 20 21 22 23 23 24 24 25 26 GDT PERCENT_AT 5.93 8.15 8.15 8.89 9.63 10.37 11.11 11.85 13.33 14.07 14.07 14.81 15.56 16.30 17.04 17.04 17.78 17.78 18.52 19.26 GDT RMS_LOCAL 0.33 0.58 0.58 1.02 1.26 1.59 2.14 2.32 3.30 3.22 3.22 3.50 4.10 4.40 4.65 4.65 5.14 5.14 5.48 5.76 GDT RMS_ALL_AT 15.11 15.12 15.12 14.79 14.42 14.28 13.98 13.86 13.37 13.87 13.87 13.69 13.04 12.91 12.85 12.85 14.27 14.27 14.50 14.72 # Checking swapping # possible swapping detected: Y 75 Y 75 # possible swapping detected: E 81 E 81 # possible swapping detected: F 90 F 90 # possible swapping detected: E 101 E 101 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 72 I 72 21.952 0 0.066 1.085 22.993 0.000 0.000 LGA K 73 K 73 21.446 0 0.612 1.582 24.166 0.000 0.000 LGA L 74 L 74 18.928 0 0.628 1.386 21.583 0.000 0.000 LGA Y 75 Y 75 15.041 0 0.637 0.954 17.449 0.000 3.373 LGA T 76 T 76 17.090 0 0.678 1.412 18.821 0.000 0.000 LGA T 77 T 77 15.704 0 0.653 1.361 17.453 0.000 0.000 LGA N 78 N 78 10.174 0 0.662 1.108 11.815 0.714 1.131 LGA F 79 F 79 8.071 0 0.073 0.195 8.765 4.286 5.887 LGA T 80 T 80 7.793 0 0.143 1.191 8.598 8.571 7.143 LGA E 81 E 81 7.494 0 0.573 1.256 14.421 16.905 7.672 LGA S 82 S 82 4.862 0 0.046 0.647 5.695 38.333 36.032 LGA E 83 E 83 1.809 0 0.614 1.300 7.531 81.548 47.831 LGA L 84 L 84 0.846 0 0.061 1.444 4.245 90.595 73.750 LGA K 85 K 85 1.208 0 0.026 1.307 7.439 83.690 61.323 LGA D 86 D 86 1.745 0 0.066 1.040 2.163 75.000 75.119 LGA L 87 L 87 1.568 0 0.045 0.975 4.519 79.286 70.952 LGA N 88 N 88 0.728 0 0.022 1.202 4.275 88.214 75.119 LGA A 89 A 89 1.454 0 0.027 0.056 2.063 83.690 79.905 LGA F 90 F 90 1.371 0 0.017 0.142 4.557 81.429 58.788 LGA Y 91 Y 91 1.969 0 0.173 0.201 4.455 67.262 57.262 LGA Q 92 Q 92 2.192 0 0.179 0.228 4.835 66.905 53.386 LGA S 93 S 93 1.019 0 0.553 0.615 4.560 81.905 68.175 LGA P 94 P 94 3.834 0 0.089 0.113 6.234 51.905 40.476 LGA L 95 L 95 2.017 0 0.050 1.171 5.575 70.952 52.917 LGA G 96 G 96 3.617 0 0.330 0.330 4.114 52.619 52.619 LGA K 97 K 97 2.346 0 0.551 0.841 10.527 48.810 29.577 LGA K 98 K 98 9.046 0 0.536 1.262 15.998 3.690 1.640 LGA V 99 V 99 12.923 0 0.032 0.242 15.163 0.000 0.000 LGA L 100 L 100 11.554 0 0.613 1.520 13.724 0.000 4.345 LGA E 101 E 101 16.748 0 0.662 1.128 21.818 0.000 0.000 LGA K 102 K 102 21.351 0 0.607 1.236 24.736 0.000 0.000 LGA M 103 M 103 23.730 0 0.620 1.286 28.801 0.000 0.000 LGA P 104 P 104 26.256 0 0.169 0.179 27.508 0.000 0.000 LGA R 105 R 105 29.412 0 0.025 1.511 36.842 0.000 0.000 LGA L 106 L 106 26.366 0 0.695 1.462 29.180 0.000 0.000 LGA T 107 T 107 23.302 0 0.636 0.676 23.616 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 36 144 144 100.00 296 296 100.00 135 SUMMARY(RMSD_GDC): 11.677 11.565 12.450 8.713 7.144 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 36 135 4.0 16 2.32 11.481 10.481 0.661 LGA_LOCAL RMSD: 2.321 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.856 Number of assigned atoms: 36 Std_ASGN_ATOMS RMSD: 11.677 Standard rmsd on all 36 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.052850 * X + 0.245925 * Y + -0.967847 * Z + 52.319748 Y_new = -0.550140 * X + -0.801691 * Y + -0.233747 * Z + 22.898817 Z_new = -0.833398 * X + 0.544805 * Y + 0.092924 * Z + 21.105652 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.475023 0.985228 1.401859 [DEG: -84.5126 56.4494 80.3206 ] ZXZ: -1.333822 1.477739 -0.991814 [DEG: -76.4224 84.6682 -56.8268 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0637TS171_1-D1 REMARK 2: T0637-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0637TS171_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 36 135 4.0 16 2.32 10.481 11.68 REMARK ---------------------------------------------------------- MOLECULE T0637TS171_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0637 REMARK MODEL 1 REMARK PARENT 1xrk_A ATOM 1 N ILE 72 25.084 11.379 15.470 1.00 0.00 N ATOM 2 CA ILE 72 26.012 10.777 16.454 1.00 0.00 C ATOM 3 CB ILE 72 26.917 9.784 15.785 1.00 0.00 C ATOM 4 CG2 ILE 72 27.680 10.486 14.651 1.00 0.00 C ATOM 5 CG1 ILE 72 27.806 9.090 16.828 1.00 0.00 C ATOM 6 CD1 ILE 72 28.539 7.868 16.275 1.00 0.00 C ATOM 7 C ILE 72 26.841 11.822 17.124 1.00 0.00 C ATOM 8 O ILE 72 26.940 11.853 18.350 1.00 0.00 O ATOM 9 N LYS 73 27.443 12.733 16.336 1.00 0.00 N ATOM 10 CA LYS 73 28.248 13.730 16.963 1.00 0.00 C ATOM 11 CB LYS 73 29.022 14.646 15.999 1.00 0.00 C ATOM 12 CG LYS 73 30.239 13.957 15.376 1.00 0.00 C ATOM 13 CD LYS 73 30.945 14.783 14.299 1.00 0.00 C ATOM 14 CE LYS 73 30.525 14.432 12.871 1.00 0.00 C ATOM 15 NZ LYS 73 31.372 15.165 11.904 1.00 0.00 N ATOM 16 C LYS 73 27.354 14.575 17.802 1.00 0.00 C ATOM 17 O LYS 73 26.214 14.866 17.440 1.00 0.00 O ATOM 18 N LEU 74 27.880 14.976 18.974 1.00 0.00 N ATOM 19 CA LEU 74 27.135 15.757 19.911 1.00 0.00 C ATOM 20 CB LEU 74 27.500 15.426 21.373 1.00 0.00 C ATOM 21 CG LEU 74 27.199 13.969 21.780 1.00 0.00 C ATOM 22 CD1 LEU 74 27.581 13.702 23.244 1.00 0.00 C ATOM 23 CD2 LEU 74 25.732 13.611 21.502 1.00 0.00 C ATOM 24 C LEU 74 27.508 17.180 19.673 1.00 0.00 C ATOM 25 O LEU 74 28.682 17.543 19.755 1.00 0.00 O ATOM 26 N TYR 75 26.506 18.024 19.360 1.00 0.00 N ATOM 27 CA TYR 75 26.749 19.415 19.127 1.00 0.00 C ATOM 28 CB TYR 75 26.292 19.906 17.739 1.00 0.00 C ATOM 29 CG TYR 75 26.308 21.397 17.756 1.00 0.00 C ATOM 30 CD1 TYR 75 27.493 22.090 17.681 1.00 0.00 C ATOM 31 CD2 TYR 75 25.127 22.105 17.836 1.00 0.00 C ATOM 32 CE1 TYR 75 27.498 23.465 17.695 1.00 0.00 C ATOM 33 CE2 TYR 75 25.127 23.480 17.852 1.00 0.00 C ATOM 34 CZ TYR 75 26.317 24.161 17.787 1.00 0.00 C ATOM 35 OH TYR 75 26.323 25.573 17.803 1.00 0.00 O ATOM 36 C TYR 75 25.991 20.197 20.146 1.00 0.00 C ATOM 37 O TYR 75 24.786 20.010 20.316 1.00 0.00 O ATOM 38 N THR 76 26.703 21.089 20.863 1.00 0.00 N ATOM 39 CA THR 76 26.108 21.945 21.849 1.00 0.00 C ATOM 40 CB THR 76 26.641 21.731 23.243 1.00 0.00 C ATOM 41 OG1 THR 76 25.869 22.462 24.185 1.00 0.00 O ATOM 42 CG2 THR 76 28.109 22.183 23.299 1.00 0.00 C ATOM 43 C THR 76 26.474 23.329 21.437 1.00 0.00 C ATOM 44 O THR 76 27.505 23.530 20.796 1.00 0.00 O ATOM 45 N THR 77 25.638 24.327 21.782 1.00 0.00 N ATOM 46 CA THR 77 25.954 25.654 21.351 1.00 0.00 C ATOM 47 CB THR 77 24.821 26.633 21.490 1.00 0.00 C ATOM 48 OG1 THR 77 24.412 26.761 22.843 1.00 0.00 O ATOM 49 CG2 THR 77 23.647 26.124 20.638 1.00 0.00 C ATOM 50 C THR 77 27.129 26.131 22.136 1.00 0.00 C ATOM 51 O THR 77 27.353 25.713 23.270 1.00 0.00 O ATOM 52 N ASN 78 27.934 27.019 21.524 1.00 0.00 N ATOM 53 CA ASN 78 29.129 27.428 22.190 1.00 0.00 C ATOM 54 CB ASN 78 30.242 27.924 21.251 1.00 0.00 C ATOM 55 CG ASN 78 30.765 26.750 20.445 1.00 0.00 C ATOM 56 OD1 ASN 78 30.936 26.860 19.232 1.00 0.00 O ATOM 57 ND2 ASN 78 31.034 25.603 21.125 1.00 0.00 N ATOM 58 C ASN 78 28.846 28.553 23.124 1.00 0.00 C ATOM 59 O ASN 78 28.010 29.415 22.867 1.00 0.00 O ATOM 60 N PHE 79 29.554 28.545 24.266 1.00 0.00 N ATOM 61 CA PHE 79 29.470 29.622 25.202 1.00 0.00 C ATOM 62 CB PHE 79 29.120 29.191 26.643 1.00 0.00 C ATOM 63 CG PHE 79 27.794 28.502 26.640 1.00 0.00 C ATOM 64 CD1 PHE 79 27.712 27.156 26.351 1.00 0.00 C ATOM 65 CD2 PHE 79 26.634 29.184 26.938 1.00 0.00 C ATOM 66 CE1 PHE 79 26.498 26.504 26.343 1.00 0.00 C ATOM 67 CE2 PHE 79 25.418 28.536 26.929 1.00 0.00 C ATOM 68 CZ PHE 79 25.348 27.194 26.635 1.00 0.00 C ATOM 69 C PHE 79 30.871 30.142 25.242 1.00 0.00 C ATOM 70 O PHE 79 31.821 29.385 25.056 1.00 0.00 O ATOM 71 N THR 80 31.056 31.453 25.451 1.00 0.00 N ATOM 72 CA THR 80 32.401 31.932 25.493 1.00 0.00 C ATOM 73 CB THR 80 32.640 33.050 24.515 1.00 0.00 C ATOM 74 OG1 THR 80 34.010 33.423 24.496 1.00 0.00 O ATOM 75 CG2 THR 80 31.753 34.244 24.895 1.00 0.00 C ATOM 76 C THR 80 32.635 32.394 26.897 1.00 0.00 C ATOM 77 O THR 80 31.738 32.943 27.530 1.00 0.00 O ATOM 78 N GLU 81 33.837 32.137 27.453 1.00 0.00 N ATOM 79 CA GLU 81 34.058 32.524 28.817 1.00 0.00 C ATOM 80 CB GLU 81 34.037 31.359 29.829 1.00 0.00 C ATOM 81 CG GLU 81 34.047 31.799 31.300 1.00 0.00 C ATOM 82 CD GLU 81 32.621 32.149 31.697 1.00 0.00 C ATOM 83 OE1 GLU 81 31.720 31.942 30.842 1.00 0.00 O ATOM 84 OE2 GLU 81 32.412 32.633 32.842 1.00 0.00 O ATOM 85 C GLU 81 35.399 33.163 28.928 1.00 0.00 C ATOM 86 O GLU 81 36.225 33.083 28.018 1.00 0.00 O ATOM 87 N SER 82 35.625 33.844 30.066 1.00 0.00 N ATOM 88 CA SER 82 36.874 34.490 30.331 1.00 0.00 C ATOM 89 CB SER 82 36.857 35.256 31.663 1.00 0.00 C ATOM 90 OG SER 82 36.457 34.382 32.706 1.00 0.00 O ATOM 91 C SER 82 37.945 33.446 30.382 1.00 0.00 C ATOM 92 O SER 82 38.956 33.563 29.693 1.00 0.00 O ATOM 93 N GLU 83 37.753 32.387 31.196 1.00 0.00 N ATOM 94 CA GLU 83 38.742 31.347 31.242 1.00 0.00 C ATOM 95 CB GLU 83 39.170 30.899 32.656 1.00 0.00 C ATOM 96 CG GLU 83 40.193 31.812 33.339 1.00 0.00 C ATOM 97 CD GLU 83 39.455 32.921 34.077 1.00 0.00 C ATOM 98 OE1 GLU 83 38.199 32.949 33.959 1.00 0.00 O ATOM 99 OE2 GLU 83 40.118 33.741 34.767 1.00 0.00 O ATOM 100 C GLU 83 38.176 30.145 30.566 1.00 0.00 C ATOM 101 O GLU 83 37.172 29.578 30.992 1.00 0.00 O ATOM 102 N LEU 84 38.809 29.744 29.456 1.00 0.00 N ATOM 103 CA LEU 84 38.388 28.592 28.724 1.00 0.00 C ATOM 104 CB LEU 84 39.089 28.503 27.358 1.00 0.00 C ATOM 105 CG LEU 84 38.720 27.265 26.534 1.00 0.00 C ATOM 106 CD1 LEU 84 37.199 27.107 26.397 1.00 0.00 C ATOM 107 CD2 LEU 84 39.421 27.336 25.169 1.00 0.00 C ATOM 108 C LEU 84 38.678 27.363 29.529 1.00 0.00 C ATOM 109 O LEU 84 37.878 26.430 29.571 1.00 0.00 O ATOM 110 N LYS 85 39.835 27.357 30.216 1.00 0.00 N ATOM 111 CA LYS 85 40.294 26.208 30.939 1.00 0.00 C ATOM 112 CB LYS 85 41.680 26.443 31.574 1.00 0.00 C ATOM 113 CG LYS 85 42.365 25.206 32.174 1.00 0.00 C ATOM 114 CD LYS 85 41.632 24.553 33.351 1.00 0.00 C ATOM 115 CE LYS 85 42.469 23.511 34.104 1.00 0.00 C ATOM 116 NZ LYS 85 42.863 22.396 33.207 1.00 0.00 N ATOM 117 C LYS 85 39.342 25.839 32.032 1.00 0.00 C ATOM 118 O LYS 85 39.020 24.660 32.176 1.00 0.00 O ATOM 119 N ASP 86 38.856 26.807 32.839 1.00 0.00 N ATOM 120 CA ASP 86 38.036 26.359 33.930 1.00 0.00 C ATOM 121 CB ASP 86 37.681 27.406 35.016 1.00 0.00 C ATOM 122 CG ASP 86 36.678 28.435 34.518 1.00 0.00 C ATOM 123 OD1 ASP 86 36.918 29.048 33.448 1.00 0.00 O ATOM 124 OD2 ASP 86 35.644 28.619 35.216 1.00 0.00 O ATOM 125 C ASP 86 36.772 25.789 33.382 1.00 0.00 C ATOM 126 O ASP 86 36.279 24.781 33.886 1.00 0.00 O ATOM 127 N LEU 87 36.217 26.411 32.324 1.00 0.00 N ATOM 128 CA LEU 87 34.980 25.917 31.803 1.00 0.00 C ATOM 129 CB LEU 87 34.327 26.773 30.707 1.00 0.00 C ATOM 130 CG LEU 87 33.593 27.996 31.279 1.00 0.00 C ATOM 131 CD1 LEU 87 34.575 28.974 31.928 1.00 0.00 C ATOM 132 CD2 LEU 87 32.658 28.643 30.245 1.00 0.00 C ATOM 133 C LEU 87 35.134 24.546 31.248 1.00 0.00 C ATOM 134 O LEU 87 34.272 23.705 31.487 1.00 0.00 O ATOM 135 N ASN 88 36.221 24.249 30.512 1.00 0.00 N ATOM 136 CA ASN 88 36.243 22.944 29.915 1.00 0.00 C ATOM 137 CB ASN 88 37.434 22.668 28.968 1.00 0.00 C ATOM 138 CG ASN 88 38.702 22.449 29.774 1.00 0.00 C ATOM 139 OD1 ASN 88 38.910 21.373 30.335 1.00 0.00 O ATOM 140 ND2 ASN 88 39.578 23.485 29.825 1.00 0.00 N ATOM 141 C ASN 88 36.268 21.901 30.986 1.00 0.00 C ATOM 142 O ASN 88 35.544 20.912 30.899 1.00 0.00 O ATOM 143 N ALA 89 37.070 22.105 32.050 1.00 0.00 N ATOM 144 CA ALA 89 37.180 21.089 33.057 1.00 0.00 C ATOM 145 CB ALA 89 38.154 21.466 34.191 1.00 0.00 C ATOM 146 C ALA 89 35.840 20.880 33.684 1.00 0.00 C ATOM 147 O ALA 89 35.419 19.752 33.933 1.00 0.00 O ATOM 148 N PHE 90 35.130 21.982 33.961 1.00 0.00 N ATOM 149 CA PHE 90 33.872 21.896 34.637 1.00 0.00 C ATOM 150 CB PHE 90 33.326 23.292 34.984 1.00 0.00 C ATOM 151 CG PHE 90 32.138 23.120 35.858 1.00 0.00 C ATOM 152 CD1 PHE 90 32.292 22.894 37.207 1.00 0.00 C ATOM 153 CD2 PHE 90 30.871 23.195 35.331 1.00 0.00 C ATOM 154 CE1 PHE 90 31.192 22.736 38.016 1.00 0.00 C ATOM 155 CE2 PHE 90 29.770 23.038 36.137 1.00 0.00 C ATOM 156 CZ PHE 90 29.930 22.806 37.480 1.00 0.00 C ATOM 157 C PHE 90 32.858 21.190 33.787 1.00 0.00 C ATOM 158 O PHE 90 32.173 20.282 34.254 1.00 0.00 O ATOM 159 N TYR 91 32.726 21.584 32.508 1.00 0.00 N ATOM 160 CA TYR 91 31.702 20.989 31.699 1.00 0.00 C ATOM 161 CB TYR 91 31.503 21.676 30.333 1.00 0.00 C ATOM 162 CG TYR 91 30.898 23.021 30.566 1.00 0.00 C ATOM 163 CD1 TYR 91 29.534 23.173 30.679 1.00 0.00 C ATOM 164 CD2 TYR 91 31.695 24.135 30.683 1.00 0.00 C ATOM 165 CE1 TYR 91 28.975 24.413 30.897 1.00 0.00 C ATOM 166 CE2 TYR 91 31.147 25.375 30.902 1.00 0.00 C ATOM 167 CZ TYR 91 29.787 25.519 31.005 1.00 0.00 C ATOM 168 OH TYR 91 29.239 26.802 31.228 1.00 0.00 O ATOM 169 C TYR 91 31.974 19.539 31.448 1.00 0.00 C ATOM 170 O TYR 91 31.068 18.713 31.519 1.00 0.00 O ATOM 171 N GLN 92 33.219 19.181 31.090 1.00 0.00 N ATOM 172 CA GLN 92 33.483 17.799 30.803 1.00 0.00 C ATOM 173 CB GLN 92 34.878 17.592 30.196 1.00 0.00 C ATOM 174 CG GLN 92 35.091 18.280 28.844 1.00 0.00 C ATOM 175 CD GLN 92 36.561 18.090 28.485 1.00 0.00 C ATOM 176 OE1 GLN 92 37.388 17.873 29.370 1.00 0.00 O ATOM 177 NE2 GLN 92 36.903 18.163 27.172 1.00 0.00 N ATOM 178 C GLN 92 33.447 16.968 32.047 1.00 0.00 C ATOM 179 O GLN 92 32.701 15.993 32.133 1.00 0.00 O ATOM 180 N SER 93 34.241 17.354 33.065 1.00 0.00 N ATOM 181 CA SER 93 34.346 16.506 34.215 1.00 0.00 C ATOM 182 CB SER 93 35.571 16.828 35.101 1.00 0.00 C ATOM 183 OG SER 93 36.769 16.671 34.354 1.00 0.00 O ATOM 184 C SER 93 33.063 16.497 35.001 1.00 0.00 C ATOM 185 O SER 93 32.494 15.420 35.174 1.00 0.00 O ATOM 186 N PRO 94 32.556 17.599 35.513 1.00 0.00 N ATOM 187 CA PRO 94 31.297 17.486 36.201 1.00 0.00 C ATOM 188 CD PRO 94 33.396 18.600 36.157 1.00 0.00 C ATOM 189 CB PRO 94 31.134 18.762 37.020 1.00 0.00 C ATOM 190 CG PRO 94 32.583 19.153 37.340 1.00 0.00 C ATOM 191 C PRO 94 30.095 17.160 35.372 1.00 0.00 C ATOM 192 O PRO 94 29.317 16.298 35.773 1.00 0.00 O ATOM 193 N LEU 95 29.910 17.844 34.231 1.00 0.00 N ATOM 194 CA LEU 95 28.745 17.634 33.420 1.00 0.00 C ATOM 195 CB LEU 95 28.484 18.765 32.415 1.00 0.00 C ATOM 196 CG LEU 95 28.117 20.090 33.110 1.00 0.00 C ATOM 197 CD1 LEU 95 29.298 20.666 33.901 1.00 0.00 C ATOM 198 CD2 LEU 95 27.516 21.094 32.123 1.00 0.00 C ATOM 199 C LEU 95 28.797 16.317 32.705 1.00 0.00 C ATOM 200 O LEU 95 27.771 15.659 32.538 1.00 0.00 O ATOM 201 N GLY 96 29.995 15.885 32.264 1.00 0.00 N ATOM 202 CA GLY 96 30.090 14.641 31.551 1.00 0.00 C ATOM 203 C GLY 96 30.061 14.896 30.071 1.00 0.00 C ATOM 204 O GLY 96 29.761 13.991 29.292 1.00 0.00 O ATOM 205 N LYS 97 30.361 16.139 29.642 1.00 0.00 N ATOM 206 CA LYS 97 30.378 16.442 28.236 1.00 0.00 C ATOM 207 CB LYS 97 30.274 17.933 27.889 1.00 0.00 C ATOM 208 CG LYS 97 28.908 18.508 28.258 1.00 0.00 C ATOM 209 CD LYS 97 28.785 20.019 28.067 1.00 0.00 C ATOM 210 CE LYS 97 27.470 20.603 28.593 1.00 0.00 C ATOM 211 NZ LYS 97 27.336 22.005 28.141 1.00 0.00 N ATOM 212 C LYS 97 31.645 15.923 27.639 1.00 0.00 C ATOM 213 O LYS 97 32.558 15.517 28.352 1.00 0.00 O ATOM 214 N LYS 98 31.691 15.931 26.287 1.00 0.00 N ATOM 215 CA LYS 98 32.749 15.358 25.497 1.00 0.00 C ATOM 216 CB LYS 98 32.304 15.001 24.070 1.00 0.00 C ATOM 217 CG LYS 98 31.275 13.875 24.031 1.00 0.00 C ATOM 218 CD LYS 98 31.799 12.617 24.717 1.00 0.00 C ATOM 219 CE LYS 98 33.222 12.266 24.282 1.00 0.00 C ATOM 220 NZ LYS 98 33.691 11.050 24.980 1.00 0.00 N ATOM 221 C LYS 98 33.935 16.261 25.369 1.00 0.00 C ATOM 222 O LYS 98 33.831 17.483 25.443 1.00 0.00 O ATOM 223 N VAL 99 35.115 15.636 25.172 1.00 0.00 N ATOM 224 CA VAL 99 36.386 16.293 25.066 1.00 0.00 C ATOM 225 CB VAL 99 37.504 15.318 24.907 1.00 0.00 C ATOM 226 CG1 VAL 99 38.807 16.102 24.689 1.00 0.00 C ATOM 227 CG2 VAL 99 37.508 14.394 26.134 1.00 0.00 C ATOM 228 C VAL 99 36.448 17.182 23.876 1.00 0.00 C ATOM 229 O VAL 99 36.732 18.370 24.015 1.00 0.00 O ATOM 230 N LEU 100 36.143 16.649 22.677 1.00 0.00 N ATOM 231 CA LEU 100 36.324 17.458 21.510 1.00 0.00 C ATOM 232 CB LEU 100 35.409 18.690 21.443 1.00 0.00 C ATOM 233 CG LEU 100 33.936 18.335 21.186 1.00 0.00 C ATOM 234 CD1 LEU 100 33.078 19.602 21.064 1.00 0.00 C ATOM 235 CD2 LEU 100 33.792 17.410 19.966 1.00 0.00 C ATOM 236 C LEU 100 37.744 17.915 21.515 1.00 0.00 C ATOM 237 O LEU 100 38.610 17.268 22.099 1.00 0.00 O ATOM 238 N GLU 101 38.020 19.023 20.806 1.00 0.00 N ATOM 239 CA GLU 101 39.341 19.573 20.766 1.00 0.00 C ATOM 240 CB GLU 101 39.601 20.406 19.503 1.00 0.00 C ATOM 241 CG GLU 101 39.605 19.595 18.209 1.00 0.00 C ATOM 242 CD GLU 101 40.976 18.955 18.076 1.00 0.00 C ATOM 243 OE1 GLU 101 41.894 19.372 18.833 1.00 0.00 O ATOM 244 OE2 GLU 101 41.125 18.048 17.215 1.00 0.00 O ATOM 245 C GLU 101 39.454 20.520 21.913 1.00 0.00 C ATOM 246 O GLU 101 38.458 21.093 22.349 1.00 0.00 O ATOM 247 N LYS 102 40.680 20.687 22.453 1.00 0.00 N ATOM 248 CA LYS 102 40.865 21.612 23.531 1.00 0.00 C ATOM 249 CB LYS 102 41.180 20.932 24.880 1.00 0.00 C ATOM 250 CG LYS 102 41.187 21.892 26.072 1.00 0.00 C ATOM 251 CD LYS 102 41.207 21.193 27.434 1.00 0.00 C ATOM 252 CE LYS 102 40.025 20.243 27.646 1.00 0.00 C ATOM 253 NZ LYS 102 40.233 19.425 28.863 1.00 0.00 N ATOM 254 C LYS 102 42.038 22.464 23.176 1.00 0.00 C ATOM 255 O LYS 102 43.081 21.958 22.763 1.00 0.00 O ATOM 256 N MET 103 41.882 23.797 23.308 1.00 0.00 N ATOM 257 CA MET 103 42.954 24.703 23.026 1.00 0.00 C ATOM 258 CB MET 103 42.824 25.373 21.645 1.00 0.00 C ATOM 259 CG MET 103 44.138 25.922 21.081 1.00 0.00 C ATOM 260 SD MET 103 44.037 26.465 19.349 1.00 0.00 S ATOM 261 CE MET 103 45.811 26.255 19.015 1.00 0.00 C ATOM 262 C MET 103 42.831 25.759 24.074 1.00 0.00 C ATOM 263 O MET 103 41.731 25.991 24.571 1.00 0.00 O ATOM 264 N PRO 104 43.886 26.393 24.480 1.00 0.00 N ATOM 265 CA PRO 104 43.696 27.399 25.476 1.00 0.00 C ATOM 266 CD PRO 104 45.186 25.753 24.596 1.00 0.00 C ATOM 267 CB PRO 104 45.093 27.780 25.953 1.00 0.00 C ATOM 268 CG PRO 104 45.888 26.473 25.763 1.00 0.00 C ATOM 269 C PRO 104 42.853 28.515 24.959 1.00 0.00 C ATOM 270 O PRO 104 42.044 29.053 25.712 1.00 0.00 O ATOM 271 N ARG 105 43.042 28.895 23.686 1.00 0.00 N ATOM 272 CA ARG 105 42.262 29.954 23.130 1.00 0.00 C ATOM 273 CB ARG 105 42.861 30.501 21.824 1.00 0.00 C ATOM 274 CG ARG 105 44.017 31.481 22.075 1.00 0.00 C ATOM 275 CD ARG 105 45.176 30.907 22.898 1.00 0.00 C ATOM 276 NE ARG 105 44.769 30.913 24.334 1.00 0.00 N ATOM 277 CZ ARG 105 45.136 31.930 25.169 1.00 0.00 C ATOM 278 NH1 ARG 105 45.949 32.933 24.720 1.00 0.00 N ATOM 279 NH2 ARG 105 44.712 31.931 26.464 1.00 0.00 N ATOM 280 C ARG 105 40.856 29.503 22.893 1.00 0.00 C ATOM 281 O ARG 105 39.909 30.238 23.174 1.00 0.00 O ATOM 282 N LEU 106 40.673 28.274 22.372 1.00 0.00 N ATOM 283 CA LEU 106 39.331 27.865 22.071 1.00 0.00 C ATOM 284 CB LEU 106 38.951 28.021 20.588 1.00 0.00 C ATOM 285 CG LEU 106 38.930 29.475 20.090 1.00 0.00 C ATOM 286 CD1 LEU 106 38.536 29.550 18.604 1.00 0.00 C ATOM 287 CD2 LEU 106 38.038 30.352 20.981 1.00 0.00 C ATOM 288 C LEU 106 39.172 26.413 22.381 1.00 0.00 C ATOM 289 O LEU 106 40.135 25.649 22.371 1.00 0.00 O ATOM 290 N THR 107 37.926 26.011 22.695 1.00 0.00 N ATOM 291 CA THR 107 37.638 24.625 22.924 1.00 0.00 C ATOM 292 CB THR 107 37.225 24.313 24.337 1.00 0.00 C ATOM 293 OG1 THR 107 36.078 25.066 24.702 1.00 0.00 O ATOM 294 CG2 THR 107 38.398 24.608 25.280 1.00 0.00 C ATOM 295 C THR 107 36.472 24.281 21.996 1.00 0.00 C ATOM 296 O THR 107 35.407 24.942 22.096 1.00 0.00 O ATOM 297 OXT THR 107 36.641 23.350 21.160 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 296 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 84.26 51.4 70 26.1 268 ARMSMC SECONDARY STRUCTURE . . 83.42 53.3 60 25.6 234 ARMSMC SURFACE . . . . . . . . 87.74 47.5 61 26.3 232 ARMSMC BURIED . . . . . . . . 55.10 77.8 9 25.0 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.41 38.2 34 30.1 113 ARMSSC1 RELIABLE SIDE CHAINS . 85.56 36.4 33 31.4 105 ARMSSC1 SECONDARY STRUCTURE . . 84.73 34.5 29 29.0 100 ARMSSC1 SURFACE . . . . . . . . 81.00 40.0 30 30.0 100 ARMSSC1 BURIED . . . . . . . . 106.53 25.0 4 30.8 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.46 33.3 27 29.0 93 ARMSSC2 RELIABLE SIDE CHAINS . 76.36 42.1 19 26.4 72 ARMSSC2 SECONDARY STRUCTURE . . 86.42 32.0 25 29.4 85 ARMSSC2 SURFACE . . . . . . . . 88.71 33.3 24 29.3 82 ARMSSC2 BURIED . . . . . . . . 86.48 33.3 3 27.3 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.50 45.5 11 23.4 47 ARMSSC3 RELIABLE SIDE CHAINS . 93.86 40.0 10 28.6 35 ARMSSC3 SECONDARY STRUCTURE . . 89.50 45.5 11 25.0 44 ARMSSC3 SURFACE . . . . . . . . 89.50 45.5 11 23.9 46 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.02 16.7 6 30.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 92.02 16.7 6 30.0 20 ARMSSC4 SECONDARY STRUCTURE . . 92.02 16.7 6 31.6 19 ARMSSC4 SURFACE . . . . . . . . 92.02 16.7 6 30.0 20 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.68 (Number of atoms: 36) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.68 36 26.7 135 CRMSCA CRN = ALL/NP . . . . . 0.3244 CRMSCA SECONDARY STRUCTURE . . 12.16 31 26.5 117 CRMSCA SURFACE . . . . . . . . 11.56 31 26.5 117 CRMSCA BURIED . . . . . . . . 12.39 5 27.8 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.72 179 26.6 672 CRMSMC SECONDARY STRUCTURE . . 12.19 154 26.4 584 CRMSMC SURFACE . . . . . . . . 11.61 155 26.5 584 CRMSMC BURIED . . . . . . . . 12.45 24 27.3 88 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.31 152 28.9 526 CRMSSC RELIABLE SIDE CHAINS . 13.46 132 29.9 442 CRMSSC SECONDARY STRUCTURE . . 13.88 133 28.2 471 CRMSSC SURFACE . . . . . . . . 13.09 137 29.7 462 CRMSSC BURIED . . . . . . . . 15.17 15 23.4 64 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.50 296 27.8 1066 CRMSALL SECONDARY STRUCTURE . . 13.02 257 27.4 939 CRMSALL SURFACE . . . . . . . . 12.36 261 28.1 930 CRMSALL BURIED . . . . . . . . 13.50 35 25.7 136 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.719 1.000 0.500 36 26.7 135 ERRCA SECONDARY STRUCTURE . . 11.185 1.000 0.500 31 26.5 117 ERRCA SURFACE . . . . . . . . 10.708 1.000 0.500 31 26.5 117 ERRCA BURIED . . . . . . . . 10.786 1.000 0.500 5 27.8 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.753 1.000 0.500 179 26.6 672 ERRMC SECONDARY STRUCTURE . . 11.204 1.000 0.500 154 26.4 584 ERRMC SURFACE . . . . . . . . 10.733 1.000 0.500 155 26.5 584 ERRMC BURIED . . . . . . . . 10.886 1.000 0.500 24 27.3 88 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.120 1.000 0.500 152 28.9 526 ERRSC RELIABLE SIDE CHAINS . 12.255 1.000 0.500 132 29.9 442 ERRSC SECONDARY STRUCTURE . . 12.773 1.000 0.500 133 28.2 471 ERRSC SURFACE . . . . . . . . 12.040 1.000 0.500 137 29.7 462 ERRSC BURIED . . . . . . . . 12.854 1.000 0.500 15 23.4 64 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.394 1.000 0.500 296 27.8 1066 ERRALL SECONDARY STRUCTURE . . 11.934 1.000 0.500 257 27.4 939 ERRALL SURFACE . . . . . . . . 11.362 1.000 0.500 261 28.1 930 ERRALL BURIED . . . . . . . . 11.626 1.000 0.500 35 25.7 136 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 3 17 36 135 DISTCA CA (P) 0.00 0.00 0.74 2.22 12.59 135 DISTCA CA (RMS) 0.00 0.00 2.14 4.00 7.02 DISTCA ALL (N) 0 2 5 21 129 296 1066 DISTALL ALL (P) 0.00 0.19 0.47 1.97 12.10 1066 DISTALL ALL (RMS) 0.00 1.80 2.27 4.01 7.17 DISTALL END of the results output