####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 102 ( 408), selected 102 , name T0637AL285_1-D1 # Molecule2: number of CA atoms 135 ( 1066), selected 102 , name T0637-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0637AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 87 - 115 4.94 20.39 LONGEST_CONTINUOUS_SEGMENT: 29 88 - 116 4.90 22.26 LONGEST_CONTINUOUS_SEGMENT: 29 91 - 119 4.93 34.67 LCS_AVERAGE: 17.94 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 94 - 115 1.98 33.63 LCS_AVERAGE: 9.43 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 94 - 111 0.52 32.80 LCS_AVERAGE: 7.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 102 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT V 26 V 26 3 3 9 0 3 3 3 3 4 4 9 11 12 14 14 21 26 29 29 30 30 30 31 LCS_GDT Q 27 Q 27 3 3 9 0 3 3 3 3 4 4 5 9 9 16 19 21 26 29 29 30 30 30 32 LCS_GDT Q 28 Q 28 3 3 9 0 3 3 3 3 4 4 5 8 9 11 15 17 26 29 29 30 31 32 34 LCS_GDT M 29 M 29 3 3 9 0 3 3 3 3 4 4 5 7 7 11 22 23 25 26 28 28 31 32 34 LCS_GDT L 30 L 30 3 3 9 1 3 3 3 3 4 6 6 7 7 7 9 10 12 15 25 26 31 32 34 LCS_GDT A 31 A 31 3 4 9 0 3 3 3 4 4 6 6 7 7 7 8 9 12 12 19 20 30 30 34 LCS_GDT Q 32 Q 32 3 4 9 3 3 3 3 4 4 6 6 7 7 7 8 9 12 12 15 20 23 26 34 LCS_GDT R 33 R 33 3 4 9 3 3 3 3 4 4 6 6 6 7 7 8 9 11 12 14 17 17 20 23 LCS_GDT F 34 F 34 3 4 9 3 3 3 3 4 4 5 5 6 7 7 8 9 11 12 17 20 23 26 34 LCS_GDT A 35 A 35 4 5 18 3 3 4 6 7 7 8 9 11 12 15 17 17 18 21 23 25 30 34 37 LCS_GDT Q 36 Q 36 4 5 18 3 3 4 5 5 7 8 9 11 12 15 17 17 18 22 25 30 32 35 37 LCS_GDT A 37 A 37 4 5 18 3 3 4 6 7 7 8 9 11 12 15 17 17 18 25 27 31 34 35 37 LCS_GDT K 38 K 38 4 5 18 3 3 4 5 6 6 7 8 11 12 15 17 17 17 19 23 25 26 34 37 LCS_GDT A 39 A 39 4 5 18 3 3 4 6 7 7 8 9 11 12 15 17 17 18 21 23 25 30 34 37 LCS_GDT P 40 P 40 5 6 18 4 5 5 6 7 7 8 9 11 12 15 17 17 18 22 27 31 34 35 37 LCS_GDT E 41 E 41 5 6 23 4 5 5 5 6 6 6 8 9 11 15 19 25 28 28 29 31 34 35 37 LCS_GDT S 42 S 42 5 6 27 4 5 5 5 6 6 7 8 9 11 15 17 17 20 25 29 31 34 35 37 LCS_GDT K 43 K 43 5 6 27 4 5 5 5 6 6 7 8 11 12 15 17 20 23 27 29 31 34 35 37 LCS_GDT K 44 K 44 5 6 27 4 5 5 5 7 9 10 14 16 21 23 24 25 28 28 30 31 34 35 37 LCS_GDT A 45 A 45 3 18 27 3 3 4 6 8 10 13 17 20 22 24 24 25 28 29 30 31 34 36 43 LCS_GDT V 46 V 46 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 29 30 34 37 42 44 LCS_GDT L 47 L 47 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 32 34 36 39 43 45 LCS_GDT E 48 E 48 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 29 30 32 34 36 39 43 45 LCS_GDT R 49 R 49 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 32 34 36 39 43 45 LCS_GDT Y 50 Y 50 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 29 31 35 38 42 45 LCS_GDT Q 51 Q 51 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 29 30 32 34 36 39 43 45 LCS_GDT A 52 A 52 17 18 27 8 14 16 17 17 17 19 19 20 22 24 25 27 30 32 34 36 39 43 45 LCS_GDT K 53 K 53 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 32 34 36 39 43 45 LCS_GDT A 54 A 54 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 32 34 36 39 43 45 LCS_GDT N 55 N 55 17 18 27 8 14 16 17 17 17 19 19 20 22 24 25 29 30 32 34 36 39 43 45 LCS_GDT A 56 A 56 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT E 57 E 57 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 25 28 32 34 36 39 43 45 LCS_GDT L 58 L 58 17 18 27 8 14 16 17 17 17 19 19 20 22 24 25 29 30 32 34 36 39 43 45 LCS_GDT D 59 D 59 17 18 27 8 14 16 17 17 17 19 19 20 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT R 60 R 60 17 18 27 8 13 16 17 17 17 19 19 20 21 24 24 27 30 32 34 36 39 43 45 LCS_GDT A 61 A 61 17 18 27 8 13 16 17 17 17 19 19 20 22 24 24 25 30 32 34 36 39 43 45 LCS_GDT I 62 I 62 17 18 27 4 10 15 17 17 17 19 19 20 22 24 25 27 30 32 34 36 39 43 45 LCS_GDT G 63 G 63 6 18 27 5 6 6 7 11 16 19 19 20 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT W 64 W 64 6 7 27 5 6 6 7 11 13 14 18 19 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT D 65 D 65 6 7 27 5 6 6 6 11 13 14 16 19 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT K 66 K 66 6 7 27 5 6 6 7 11 15 19 19 20 22 24 24 27 30 32 34 36 39 43 45 LCS_GDT I 67 I 67 6 7 27 5 6 6 7 11 13 15 18 19 22 24 24 26 30 32 34 36 39 43 45 LCS_GDT K 68 K 68 6 7 27 4 6 6 6 11 13 14 16 19 21 24 24 27 30 32 34 36 39 43 45 LCS_GDT P 69 P 69 3 8 27 1 3 4 6 8 9 11 12 14 17 23 23 27 30 32 34 36 39 43 45 LCS_GDT E 70 E 70 7 8 27 6 7 7 7 8 9 11 12 14 17 21 23 27 30 32 34 36 39 43 45 LCS_GDT L 71 L 71 7 8 26 5 7 7 7 8 8 8 12 14 17 21 23 27 30 32 34 36 39 43 45 LCS_GDT I 72 I 72 7 8 25 6 7 7 7 8 8 9 11 13 14 20 22 24 28 31 33 35 39 40 42 LCS_GDT K 73 K 73 7 8 25 6 7 7 7 8 8 8 10 13 14 18 22 24 28 31 32 35 39 40 42 LCS_GDT L 74 L 74 7 8 25 6 7 7 7 8 8 9 11 13 17 20 22 27 30 32 34 36 39 43 45 LCS_GDT Y 75 Y 75 7 8 25 6 7 7 7 8 9 11 12 14 17 21 23 27 30 32 34 36 39 43 45 LCS_GDT T 76 T 76 7 8 25 6 7 7 7 8 8 8 10 13 14 16 18 20 23 26 28 30 32 35 38 LCS_GDT K 85 K 85 8 8 28 6 7 8 8 8 8 9 10 10 12 19 21 24 27 30 34 35 39 43 45 LCS_GDT D 86 D 86 8 8 28 6 7 8 8 8 8 14 16 18 19 22 25 29 30 32 34 36 39 43 45 LCS_GDT L 87 L 87 8 8 29 6 7 8 8 11 13 14 16 18 20 23 25 29 30 32 34 36 39 43 45 LCS_GDT N 88 N 88 8 8 29 6 7 8 8 11 13 14 16 19 21 23 25 29 30 32 34 36 39 43 45 LCS_GDT A 89 A 89 8 8 29 6 7 8 8 8 13 14 17 19 21 23 25 29 30 32 34 36 39 43 45 LCS_GDT F 90 F 90 8 8 29 6 7 8 8 8 9 13 16 19 21 23 25 29 30 32 34 36 39 43 45 LCS_GDT Y 91 Y 91 8 8 29 4 7 8 8 8 9 10 12 17 20 23 25 29 30 32 34 36 39 43 45 LCS_GDT Q 92 Q 92 8 8 29 3 4 8 8 9 11 15 17 20 21 24 25 29 30 32 34 36 39 43 45 LCS_GDT S 93 S 93 4 21 29 3 4 8 8 12 17 20 23 23 23 24 25 29 30 32 34 36 39 43 45 LCS_GDT P 94 P 94 18 22 29 12 18 18 18 21 21 21 23 23 23 24 25 26 27 30 33 35 38 41 42 LCS_GDT L 95 L 95 18 22 29 9 18 18 18 21 21 21 23 23 23 24 25 26 27 29 31 33 34 36 38 LCS_GDT G 96 G 96 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 26 27 30 32 33 36 38 41 LCS_GDT K 97 K 97 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 32 34 36 39 43 45 LCS_GDT K 98 K 98 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 43 45 LCS_GDT V 99 V 99 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 38 41 45 LCS_GDT L 100 L 100 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 32 34 36 39 43 45 LCS_GDT E 101 E 101 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 32 34 36 39 43 45 LCS_GDT K 102 K 102 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 43 45 LCS_GDT M 103 M 103 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 43 45 LCS_GDT P 104 P 104 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 32 34 36 39 43 45 LCS_GDT R 105 R 105 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 43 45 LCS_GDT L 106 L 106 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 42 45 LCS_GDT T 107 T 107 18 22 29 9 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 42 45 LCS_GDT A 108 A 108 18 22 29 6 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 42 45 LCS_GDT E 109 E 109 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 37 42 45 LCS_GDT S 110 S 110 18 22 29 13 18 18 18 21 21 21 23 23 23 24 25 29 30 31 32 33 37 40 45 LCS_GDT A 111 A 111 18 22 29 10 18 18 18 21 21 21 23 23 23 24 25 29 30 31 33 35 39 42 45 LCS_GDT Q 112 Q 112 6 22 29 4 5 10 12 21 21 21 23 23 23 24 25 29 30 31 33 35 37 40 45 LCS_GDT L 113 L 113 6 22 29 4 5 9 12 21 21 21 23 23 23 24 25 26 30 31 32 33 34 35 38 LCS_GDT T 114 T 114 6 22 29 3 8 11 12 21 21 21 23 23 23 24 25 26 28 31 32 33 34 35 38 LCS_GDT Q 115 Q 115 6 22 29 3 3 6 9 14 16 20 23 23 23 24 25 29 30 31 32 33 34 35 40 LCS_GDT A 116 A 116 7 14 29 4 8 10 12 13 14 15 16 16 20 24 25 26 27 28 31 32 34 35 38 LCS_GDT K 117 K 117 10 14 29 4 8 11 12 13 14 15 16 16 18 24 25 26 27 28 29 30 31 32 35 LCS_GDT L 118 L 118 10 14 29 4 8 11 12 13 14 15 16 16 17 18 19 24 27 28 29 30 31 32 35 LCS_GDT Q 119 Q 119 10 14 29 4 8 11 12 13 14 15 16 16 17 18 19 23 26 28 29 30 31 32 35 LCS_GDT G 120 G 120 10 14 22 3 8 11 12 13 14 15 16 16 17 18 18 20 20 23 26 28 30 32 34 LCS_GDT A 121 A 121 10 14 22 6 8 11 12 13 14 15 16 16 17 18 18 20 20 21 23 25 28 32 34 LCS_GDT V 122 V 122 10 14 22 6 8 11 12 13 14 15 16 16 17 18 18 20 20 21 23 25 28 32 34 LCS_GDT E 123 E 123 10 14 22 6 6 11 12 13 14 15 16 16 17 18 18 20 20 21 23 25 25 27 31 LCS_GDT P 124 P 124 10 14 22 6 7 11 12 13 14 15 16 16 17 18 18 20 20 21 22 24 25 27 29 LCS_GDT V 125 V 125 10 14 22 6 7 11 12 13 14 15 16 16 17 18 18 20 20 21 22 24 25 25 29 LCS_GDT N 126 N 126 10 14 22 6 7 11 12 13 14 15 16 16 17 18 18 20 20 21 22 23 25 27 29 LCS_GDT K 127 K 127 3 4 22 3 3 3 3 4 6 7 12 16 17 18 18 19 20 21 22 24 25 25 26 LCS_GDT L 128 L 128 3 6 22 3 3 3 4 6 6 8 11 13 14 18 18 19 20 21 22 24 26 32 34 LCS_GDT M 129 M 129 4 6 22 3 4 4 4 6 6 7 8 11 14 16 18 19 20 21 22 24 28 32 34 LCS_GDT A 130 A 130 4 6 22 3 4 4 4 6 6 7 8 10 12 15 18 19 20 21 22 24 28 32 34 LCS_GDT D 131 D 131 4 6 14 3 4 4 4 6 6 7 8 9 11 12 12 12 14 16 19 22 27 32 34 LCS_GDT M 132 M 132 4 6 14 3 4 4 4 6 6 7 8 9 11 12 12 13 14 16 17 19 21 22 23 LCS_GDT D 133 D 133 3 6 14 3 3 4 4 6 6 7 8 9 11 12 12 12 13 14 15 15 17 18 19 LCS_GDT K 134 K 134 3 4 14 3 3 3 3 4 6 6 7 8 10 11 12 12 13 14 15 15 15 15 16 LCS_GDT E 135 E 135 3 4 14 3 3 3 3 3 6 6 7 9 10 11 11 12 13 14 15 15 15 15 16 LCS_AVERAGE LCS_A: 11.56 ( 7.31 9.43 17.94 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 18 18 18 21 21 21 23 23 23 24 25 29 30 32 34 36 39 43 45 GDT PERCENT_AT 9.63 13.33 13.33 13.33 15.56 15.56 15.56 17.04 17.04 17.04 17.78 18.52 21.48 22.22 23.70 25.19 26.67 28.89 31.85 33.33 GDT RMS_LOCAL 0.34 0.52 0.52 0.52 1.60 1.60 1.60 2.26 2.26 2.26 3.70 3.38 4.60 4.70 5.48 5.72 6.19 6.32 6.93 7.10 GDT RMS_ALL_AT 32.59 32.80 32.80 32.80 33.86 33.86 33.86 33.20 33.20 33.20 35.93 32.95 18.55 18.75 20.33 19.90 20.25 21.04 19.07 18.39 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA V 26 V 26 52.153 3 0.657 0.657 52.613 0.000 0.000 LGA Q 27 Q 27 53.397 5 0.497 0.497 53.397 0.000 0.000 LGA Q 28 Q 28 49.896 5 0.591 0.591 53.008 0.000 0.000 LGA M 29 M 29 52.693 4 0.685 0.685 53.314 0.000 0.000 LGA L 30 L 30 54.849 4 0.564 0.564 58.384 0.000 0.000 LGA A 31 A 31 55.973 1 0.647 0.647 55.973 0.000 0.000 LGA Q 32 Q 32 55.650 5 0.496 0.496 60.045 0.000 0.000 LGA R 33 R 33 60.345 7 0.685 0.685 63.347 0.000 0.000 LGA F 34 F 34 65.583 7 0.119 0.119 67.682 0.000 0.000 LGA A 35 A 35 43.435 1 0.079 0.079 43.586 0.000 0.000 LGA Q 36 Q 36 40.626 5 0.055 0.055 42.507 0.000 0.000 LGA A 37 A 37 44.680 1 0.687 0.687 46.438 0.000 0.000 LGA K 38 K 38 49.624 5 0.668 0.668 49.624 0.000 0.000 LGA A 39 A 39 46.773 1 0.408 0.408 47.919 0.000 0.000 LGA P 40 P 40 46.646 3 0.598 0.598 46.717 0.000 0.000 LGA E 41 E 41 47.711 5 0.000 0.000 48.831 0.000 0.000 LGA S 42 S 42 51.352 2 0.211 0.211 51.352 0.000 0.000 LGA K 43 K 43 46.214 5 0.367 0.367 47.745 0.000 0.000 LGA K 44 K 44 42.863 5 0.131 0.131 44.098 0.000 0.000 LGA A 45 A 45 45.654 1 0.058 0.058 46.682 0.000 0.000 LGA V 46 V 46 46.890 3 0.625 0.625 46.890 0.000 0.000 LGA L 47 L 47 47.809 4 0.031 0.031 47.913 0.000 0.000 LGA E 48 E 48 46.888 5 0.008 0.008 47.479 0.000 0.000 LGA R 49 R 49 43.997 7 0.068 0.068 45.069 0.000 0.000 LGA Y 50 Y 50 43.931 8 0.134 0.134 44.051 0.000 0.000 LGA Q 51 Q 51 44.158 5 0.151 0.151 44.287 0.000 0.000 LGA A 52 A 52 41.872 1 0.069 0.069 42.808 0.000 0.000 LGA K 53 K 53 40.492 5 0.094 0.094 40.898 0.000 0.000 LGA A 54 A 54 41.422 1 0.043 0.043 41.422 0.000 0.000 LGA N 55 N 55 40.244 4 0.032 0.032 40.570 0.000 0.000 LGA A 56 A 56 38.933 1 0.071 0.071 39.360 0.000 0.000 LGA E 57 E 57 39.118 5 0.079 0.079 39.363 0.000 0.000 LGA L 58 L 58 39.118 4 0.022 0.022 39.118 0.000 0.000 LGA D 59 D 59 38.470 4 0.118 0.118 38.822 0.000 0.000 LGA R 60 R 60 38.467 7 0.033 0.033 39.144 0.000 0.000 LGA A 61 A 61 39.478 1 0.111 0.111 39.704 0.000 0.000 LGA I 62 I 62 38.398 4 0.314 0.314 38.691 0.000 0.000 LGA G 63 G 63 38.386 0 0.486 0.486 38.386 0.000 0.000 LGA W 64 W 64 34.842 10 0.014 0.014 36.606 0.000 0.000 LGA D 65 D 65 39.789 4 0.103 0.103 42.234 0.000 0.000 LGA K 66 K 66 42.845 5 0.231 0.231 42.845 0.000 0.000 LGA I 67 I 67 38.175 4 0.172 0.172 39.510 0.000 0.000 LGA K 68 K 68 35.730 5 0.468 0.468 36.860 0.000 0.000 LGA P 69 P 69 34.748 3 0.362 0.362 35.523 0.000 0.000 LGA E 70 E 70 33.752 5 0.557 0.557 33.838 0.000 0.000 LGA L 71 L 71 30.001 4 0.197 0.197 31.233 0.000 0.000 LGA I 72 I 72 27.323 4 0.066 0.066 28.209 0.000 0.000 LGA K 73 K 73 30.363 5 0.024 0.024 30.911 0.000 0.000 LGA L 74 L 74 31.413 4 0.036 0.036 31.413 0.000 0.000 LGA Y 75 Y 75 28.156 8 0.076 0.076 28.999 0.000 0.000 LGA T 76 T 76 28.031 3 0.067 0.067 29.650 0.000 0.000 LGA K 85 K 85 22.108 5 0.079 0.079 22.390 0.000 0.000 LGA D 86 D 86 22.057 4 0.048 0.048 22.461 0.000 0.000 LGA L 87 L 87 18.789 4 0.048 0.048 20.151 0.000 0.000 LGA N 88 N 88 16.141 4 0.168 0.168 17.270 0.000 0.000 LGA A 89 A 89 16.998 1 0.095 0.095 17.058 0.000 0.000 LGA F 90 F 90 17.070 7 0.083 0.083 17.070 0.000 0.000 LGA Y 91 Y 91 14.322 8 0.174 0.174 15.316 0.000 0.000 LGA Q 92 Q 92 9.727 5 0.259 0.259 11.796 10.000 4.444 LGA S 93 S 93 5.116 2 0.172 0.172 6.932 35.000 23.333 LGA P 94 P 94 2.256 3 0.576 0.576 2.256 71.190 40.680 LGA L 95 L 95 1.354 4 0.085 0.085 1.606 81.548 40.774 LGA G 96 G 96 2.248 0 0.099 0.099 2.248 68.810 68.810 LGA K 97 K 97 2.127 5 0.049 0.049 2.160 70.952 31.534 LGA K 98 K 98 1.277 5 0.107 0.107 1.550 81.548 36.243 LGA V 99 V 99 0.728 3 0.051 0.051 0.815 90.476 51.701 LGA L 100 L 100 1.187 4 0.166 0.166 1.399 81.429 40.714 LGA E 101 E 101 0.943 5 0.143 0.143 1.351 88.214 39.206 LGA K 102 K 102 0.535 5 0.039 0.039 0.708 92.857 41.270 LGA M 103 M 103 0.365 4 0.081 0.081 0.922 95.238 47.619 LGA P 104 P 104 0.281 3 0.199 0.199 1.600 90.833 51.905 LGA R 105 R 105 1.342 7 0.065 0.065 2.041 77.381 28.139 LGA L 106 L 106 1.578 4 0.164 0.164 2.893 69.048 34.524 LGA T 107 T 107 2.165 3 0.094 0.094 2.555 64.881 37.075 LGA A 108 A 108 2.495 1 0.153 0.153 2.495 66.786 53.429 LGA E 109 E 109 2.428 5 0.039 0.039 2.475 64.762 28.783 LGA S 110 S 110 2.463 2 0.138 0.138 2.499 66.786 44.524 LGA A 111 A 111 2.170 1 0.106 0.106 2.681 75.714 60.571 LGA Q 112 Q 112 2.267 5 0.032 0.032 3.219 63.095 28.042 LGA L 113 L 113 2.003 4 0.365 0.365 3.875 61.429 30.714 LGA T 114 T 114 2.528 3 0.249 0.249 4.822 52.857 30.204 LGA Q 115 Q 115 4.765 5 0.438 0.438 6.449 28.929 12.857 LGA A 116 A 116 10.780 1 0.078 0.078 13.658 1.190 0.952 LGA K 117 K 117 12.030 5 0.076 0.076 15.133 0.000 0.000 LGA L 118 L 118 12.764 4 0.061 0.061 16.262 0.000 0.000 LGA Q 119 Q 119 15.794 5 0.106 0.106 20.078 0.000 0.000 LGA G 120 G 120 20.808 0 0.244 0.244 23.684 0.000 0.000 LGA A 121 A 121 21.420 1 0.154 0.154 23.882 0.000 0.000 LGA V 122 V 122 21.910 3 0.061 0.061 25.155 0.000 0.000 LGA E 123 E 123 26.314 5 0.090 0.090 29.271 0.000 0.000 LGA P 124 P 124 29.603 3 0.090 0.090 31.798 0.000 0.000 LGA V 125 V 125 29.159 3 0.430 0.430 31.197 0.000 0.000 LGA N 126 N 126 31.050 4 0.169 0.169 32.270 0.000 0.000 LGA K 127 K 127 32.064 5 0.585 0.585 32.064 0.000 0.000 LGA L 128 L 128 29.484 4 0.526 0.526 30.431 0.000 0.000 LGA M 129 M 129 24.149 4 0.065 0.065 25.829 0.000 0.000 LGA A 130 A 130 25.283 1 0.635 0.635 27.496 0.000 0.000 LGA D 131 D 131 25.626 4 0.303 0.303 27.702 0.000 0.000 LGA M 132 M 132 25.972 4 0.593 0.593 25.972 0.000 0.000 LGA D 133 D 133 24.582 4 0.633 0.633 28.584 0.000 0.000 LGA K 134 K 134 28.369 5 0.028 0.028 32.740 0.000 0.000 LGA E 135 E 135 32.864 5 0.622 0.622 34.005 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 102 408 408 100.00 807 408 50.56 135 SUMMARY(RMSD_GDC): 15.982 15.976 15.976 12.229 6.726 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 102 135 4.0 23 2.26 17.222 14.972 0.973 LGA_LOCAL RMSD: 2.263 Number of atoms: 23 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 33.199 Number of assigned atoms: 102 Std_ASGN_ATOMS RMSD: 15.982 Standard rmsd on all 102 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.472519 * X + 0.236253 * Y + -0.849065 * Z + 88.403465 Y_new = -0.878286 * X + -0.046353 * Y + 0.475883 * Z + -5.592024 Z_new = 0.073072 * X + 0.970585 * Y + 0.229401 * Z + -56.824753 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.064380 -0.073137 1.338703 [DEG: -118.2803 -4.1904 76.7020 ] ZXZ: -2.081649 1.339334 0.075144 [DEG: -119.2697 76.7382 4.3055 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0637AL285_1-D1 REMARK 2: T0637-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0637AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 102 135 4.0 23 2.26 14.972 15.98 REMARK ---------------------------------------------------------- MOLECULE T0637AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2bl4A ATOM 1 N VAL 26 0.171 31.614 44.650 1.00 0.00 N ATOM 2 CA VAL 26 1.116 31.999 45.739 1.00 0.00 C ATOM 3 C VAL 26 2.195 32.995 45.205 1.00 0.00 C ATOM 4 O VAL 26 2.391 33.141 43.992 1.00 0.00 O ATOM 5 N GLN 27 2.895 33.645 46.138 1.00 0.00 N ATOM 6 CA GLN 27 3.960 34.579 45.848 1.00 0.00 C ATOM 7 C GLN 27 5.288 33.865 45.510 1.00 0.00 C ATOM 8 O GLN 27 5.466 32.677 45.794 1.00 0.00 O ATOM 9 N GLN 28 6.212 34.622 44.917 1.00 0.00 N ATOM 10 CA GLN 28 7.485 34.132 44.442 1.00 0.00 C ATOM 11 C GLN 28 8.611 34.868 45.128 1.00 0.00 C ATOM 12 O GLN 28 8.623 36.114 45.143 1.00 0.00 O ATOM 13 N MET 29 9.577 34.098 45.640 1.00 0.00 N ATOM 14 CA MET 29 10.652 34.636 46.464 1.00 0.00 C ATOM 15 C MET 29 11.902 34.712 45.640 1.00 0.00 C ATOM 16 O MET 29 12.147 33.829 44.851 1.00 0.00 O ATOM 17 N LEU 30 12.679 35.779 45.805 1.00 0.00 N ATOM 18 CA LEU 30 13.930 35.945 45.064 1.00 0.00 C ATOM 19 C LEU 30 15.087 36.189 46.006 1.00 0.00 C ATOM 20 O LEU 30 15.043 37.098 46.848 1.00 0.00 O ATOM 21 N ALA 31 16.122 35.370 45.868 1.00 0.00 N ATOM 22 CA ALA 31 17.265 35.460 46.747 1.00 0.00 C ATOM 23 C ALA 31 18.441 35.773 45.888 1.00 0.00 C ATOM 24 O ALA 31 18.726 35.011 44.983 1.00 0.00 O ATOM 25 N GLN 32 19.058 36.937 46.099 1.00 0.00 N ATOM 26 CA GLN 32 20.211 37.316 45.299 1.00 0.00 C ATOM 27 C GLN 32 21.347 37.627 46.228 1.00 0.00 C ATOM 28 O GLN 32 21.168 37.629 47.427 1.00 0.00 O ATOM 29 N ARG 33 22.527 37.879 45.694 1.00 0.00 N ATOM 30 CA ARG 33 23.604 38.346 46.531 1.00 0.00 C ATOM 31 C ARG 33 23.295 39.776 46.954 1.00 0.00 C ATOM 32 O ARG 33 22.821 40.566 46.160 1.00 0.00 O ATOM 33 N PHE 34 23.531 40.123 48.207 1.00 0.00 N ATOM 34 CA PHE 34 23.319 41.522 48.612 1.00 0.00 C ATOM 35 C PHE 34 24.287 42.477 47.910 1.00 0.00 C ATOM 36 O PHE 34 23.938 43.631 47.615 1.00 0.00 O ATOM 37 N ALA 35 25.393 33.569 26.722 1.00 0.00 N ATOM 38 CA ALA 35 26.175 32.339 26.617 1.00 0.00 C ATOM 39 C ALA 35 26.292 31.905 25.178 1.00 0.00 C ATOM 40 O ALA 35 27.380 31.576 24.692 1.00 0.00 O ATOM 41 N GLN 36 25.160 31.916 24.498 1.00 0.00 N ATOM 42 CA GLN 36 25.090 31.393 23.155 1.00 0.00 C ATOM 43 C GLN 36 26.052 32.159 22.313 1.00 0.00 C ATOM 44 O GLN 36 26.851 31.565 21.620 1.00 0.00 O ATOM 45 N ALA 37 26.007 33.476 22.377 1.00 0.00 N ATOM 46 CA ALA 37 26.838 34.251 21.498 1.00 0.00 C ATOM 47 C ALA 37 28.269 34.430 21.930 1.00 0.00 C ATOM 48 O ALA 37 28.941 35.274 21.368 1.00 0.00 O ATOM 49 N LYS 38 28.747 33.657 22.907 1.00 0.00 N ATOM 50 CA LYS 38 30.075 33.881 23.463 1.00 0.00 C ATOM 51 C LYS 38 30.895 32.636 23.829 1.00 0.00 C ATOM 52 O LYS 38 32.133 32.682 23.784 1.00 0.00 O ATOM 53 N ALA 39 30.232 31.546 24.228 1.00 0.00 N ATOM 54 CA ALA 39 30.942 30.340 24.601 1.00 0.00 C ATOM 55 C ALA 39 31.941 29.894 23.558 1.00 0.00 C ATOM 56 O ALA 39 32.987 29.370 23.915 1.00 0.00 O ATOM 57 N PRO 40 31.629 30.082 22.278 1.00 0.00 N ATOM 58 CA PRO 40 32.493 29.604 21.199 1.00 0.00 C ATOM 59 C PRO 40 33.863 30.317 21.127 1.00 0.00 C ATOM 60 O PRO 40 34.931 29.662 21.038 1.00 0.00 O ATOM 61 N GLU 41 33.814 31.652 21.153 1.00 0.00 N ATOM 62 CA GLU 41 35.014 32.503 21.137 1.00 0.00 C ATOM 63 C GLU 41 35.783 32.469 22.445 1.00 0.00 C ATOM 64 O GLU 41 37.016 32.674 22.468 1.00 0.00 O ATOM 65 N SER 42 35.062 32.220 23.540 1.00 0.00 N ATOM 66 CA SER 42 35.694 31.931 24.800 1.00 0.00 C ATOM 67 C SER 42 36.356 30.575 24.694 1.00 0.00 C ATOM 68 O SER 42 37.537 30.428 24.992 1.00 0.00 O ATOM 69 N LYS 43 35.649 29.559 24.247 1.00 0.00 N ATOM 70 CA LYS 43 36.370 28.311 24.126 1.00 0.00 C ATOM 71 C LYS 43 37.605 28.545 23.238 1.00 0.00 C ATOM 72 O LYS 43 38.679 28.043 23.534 1.00 0.00 O ATOM 73 N LYS 44 37.459 29.381 22.207 1.00 0.00 N ATOM 74 CA LYS 44 38.578 29.763 21.295 1.00 0.00 C ATOM 75 C LYS 44 39.643 30.689 21.890 1.00 0.00 C ATOM 76 O LYS 44 40.723 30.833 21.316 1.00 0.00 O ATOM 77 N ALA 45 39.340 31.327 23.014 1.00 0.00 N ATOM 78 CA ALA 45 40.363 32.070 23.730 1.00 0.00 C ATOM 79 C ALA 45 40.204 33.579 23.822 1.00 0.00 C ATOM 80 O ALA 45 40.829 34.180 24.699 1.00 0.00 O ATOM 81 N VAL 46 39.390 34.185 22.936 1.00 0.00 N ATOM 82 CA VAL 46 39.110 35.634 22.907 1.00 0.00 C ATOM 83 C VAL 46 38.709 36.031 24.302 1.00 0.00 C ATOM 84 O VAL 46 37.788 35.445 24.872 1.00 0.00 O ATOM 85 N LEU 47 39.419 37.020 24.848 1.00 0.00 N ATOM 86 CA LEU 47 39.264 37.380 26.248 1.00 0.00 C ATOM 87 C LEU 47 37.944 38.052 26.571 1.00 0.00 C ATOM 88 O LEU 47 37.290 37.674 27.520 1.00 0.00 O ATOM 89 N GLU 48 37.519 39.005 25.758 1.00 0.00 N ATOM 90 CA GLU 48 36.200 39.591 25.936 1.00 0.00 C ATOM 91 C GLU 48 35.114 38.527 26.074 1.00 0.00 C ATOM 92 O GLU 48 34.220 38.672 26.907 1.00 0.00 O ATOM 93 N ARG 49 35.163 37.464 25.270 1.00 0.00 N ATOM 94 CA ARG 49 34.109 36.465 25.385 1.00 0.00 C ATOM 95 C ARG 49 34.139 35.709 26.729 1.00 0.00 C ATOM 96 O ARG 49 33.095 35.239 27.201 1.00 0.00 O ATOM 97 N TYR 50 35.321 35.608 27.340 1.00 0.00 N ATOM 98 CA TYR 50 35.477 35.064 28.700 1.00 0.00 C ATOM 99 C TYR 50 34.664 35.875 29.692 1.00 0.00 C ATOM 100 O TYR 50 33.978 35.314 30.540 1.00 0.00 O ATOM 101 N GLN 51 34.726 37.200 29.550 1.00 0.00 N ATOM 102 CA GLN 51 34.001 38.152 30.372 1.00 0.00 C ATOM 103 C GLN 51 32.498 38.031 30.138 1.00 0.00 C ATOM 104 O GLN 51 31.726 37.997 31.069 1.00 0.00 O ATOM 105 N ALA 52 32.081 37.960 28.889 1.00 0.00 N ATOM 106 CA ALA 52 30.675 37.698 28.570 1.00 0.00 C ATOM 107 C ALA 52 30.197 36.389 29.223 1.00 0.00 C ATOM 108 O ALA 52 29.140 36.382 29.853 1.00 0.00 O ATOM 109 N LYS 53 30.976 35.305 29.064 1.00 0.00 N ATOM 110 CA LYS 53 30.663 34.021 29.669 1.00 0.00 C ATOM 111 C LYS 53 30.482 34.179 31.167 1.00 0.00 C ATOM 112 O LYS 53 29.435 33.760 31.705 1.00 0.00 O ATOM 113 N ALA 54 31.481 34.797 31.835 1.00 0.00 N ATOM 114 CA ALA 54 31.465 35.061 33.296 1.00 0.00 C ATOM 115 C ALA 54 30.144 35.689 33.783 1.00 0.00 C ATOM 116 O ALA 54 29.569 35.320 34.828 1.00 0.00 O ATOM 117 N ASN 55 29.678 36.648 32.996 1.00 0.00 N ATOM 118 CA ASN 55 28.428 37.302 33.248 1.00 0.00 C ATOM 119 C ASN 55 27.243 36.358 33.070 1.00 0.00 C ATOM 120 O ASN 55 26.446 36.200 33.998 1.00 0.00 O ATOM 121 N ALA 56 27.151 35.742 31.889 1.00 0.00 N ATOM 122 CA ALA 56 25.989 34.982 31.456 1.00 0.00 C ATOM 123 C ALA 56 25.691 33.815 32.356 1.00 0.00 C ATOM 124 O ALA 56 24.546 33.505 32.595 1.00 0.00 O ATOM 125 N GLU 57 26.723 33.160 32.865 1.00 0.00 N ATOM 126 CA GLU 57 26.520 32.098 33.838 1.00 0.00 C ATOM 127 C GLU 57 25.994 32.683 35.135 1.00 0.00 C ATOM 128 O GLU 57 25.182 32.038 35.823 1.00 0.00 O ATOM 129 N LEU 58 26.441 33.900 35.463 1.00 0.00 N ATOM 130 CA LEU 58 25.971 34.575 36.663 1.00 0.00 C ATOM 131 C LEU 58 24.518 34.920 36.531 1.00 0.00 C ATOM 132 O LEU 58 23.766 34.704 37.488 1.00 0.00 O ATOM 133 N ASP 59 24.129 35.456 35.370 1.00 0.00 N ATOM 134 CA ASP 59 22.723 35.778 35.127 1.00 0.00 C ATOM 135 C ASP 59 21.864 34.505 35.194 1.00 0.00 C ATOM 136 O ASP 59 20.848 34.473 35.907 1.00 0.00 O ATOM 137 N ARG 60 22.309 33.454 34.507 1.00 0.00 N ATOM 138 CA ARG 60 21.646 32.157 34.554 1.00 0.00 C ATOM 139 C ARG 60 21.281 31.724 35.994 1.00 0.00 C ATOM 140 O ARG 60 20.207 31.126 36.200 1.00 0.00 O ATOM 141 N ALA 61 22.144 32.054 36.973 1.00 0.00 N ATOM 142 CA ALA 61 21.971 31.607 38.365 1.00 0.00 C ATOM 143 C ALA 61 20.943 32.401 39.139 1.00 0.00 C ATOM 144 O ALA 61 20.280 31.895 40.061 1.00 0.00 O ATOM 145 N ILE 62 20.812 33.665 38.753 1.00 0.00 N ATOM 146 CA ILE 62 19.804 34.526 39.337 1.00 0.00 C ATOM 147 C ILE 62 18.417 33.893 39.143 1.00 0.00 C ATOM 148 O ILE 62 17.567 33.990 39.998 1.00 0.00 O ATOM 149 N GLY 63 18.209 33.199 38.036 1.00 0.00 N ATOM 150 CA GLY 63 16.955 32.510 37.829 1.00 0.00 C ATOM 151 C GLY 63 16.875 31.150 38.493 1.00 0.00 C ATOM 152 O GLY 63 16.241 30.992 39.530 1.00 0.00 O ATOM 153 N TRP 64 17.524 30.159 37.897 1.00 0.00 N ATOM 154 CA TRP 64 17.276 28.777 38.261 1.00 0.00 C ATOM 155 C TRP 64 17.315 28.545 39.762 1.00 0.00 C ATOM 156 O TRP 64 16.551 27.745 40.303 1.00 0.00 O ATOM 157 N ASP 65 18.185 29.290 40.422 1.00 0.00 N ATOM 158 CA ASP 65 18.324 29.229 41.860 1.00 0.00 C ATOM 159 C ASP 65 16.964 29.394 42.575 1.00 0.00 C ATOM 160 O ASP 65 16.630 28.678 43.527 1.00 0.00 O ATOM 161 N LYS 66 16.181 30.341 42.077 1.00 0.00 N ATOM 162 CA LYS 66 15.035 30.827 42.787 1.00 0.00 C ATOM 163 C LYS 66 13.850 30.230 42.136 1.00 0.00 C ATOM 164 O LYS 66 12.720 30.658 42.342 1.00 0.00 O ATOM 165 N ILE 67 14.091 29.210 41.341 1.00 0.00 N ATOM 166 CA ILE 67 12.975 28.733 40.582 1.00 0.00 C ATOM 167 C ILE 67 13.028 27.266 40.183 1.00 0.00 C ATOM 168 O ILE 67 12.064 26.777 39.596 1.00 0.00 O ATOM 169 N LYS 68 14.124 26.582 40.509 1.00 0.00 N ATOM 170 CA LYS 68 14.334 25.174 40.114 1.00 0.00 C ATOM 171 C LYS 68 14.925 24.894 38.717 1.00 0.00 C ATOM 172 O LYS 68 15.108 25.807 37.910 1.00 0.00 O ATOM 173 N PRO 69 15.222 23.629 38.425 1.00 0.00 N ATOM 174 CA PRO 69 15.706 23.264 37.104 1.00 0.00 C ATOM 175 C PRO 69 14.822 22.187 36.439 1.00 0.00 C ATOM 176 O PRO 69 13.603 22.378 36.240 1.00 0.00 O ATOM 177 N GLU 70 15.437 21.067 36.070 1.00 0.00 N ATOM 178 CA GLU 70 14.696 19.972 35.473 1.00 0.00 C ATOM 179 C GLU 70 15.499 18.712 35.318 1.00 0.00 C ATOM 180 O GLU 70 16.526 18.539 35.959 1.00 0.00 O ATOM 181 N LEU 71 15.036 17.848 34.427 1.00 0.00 N ATOM 182 CA LEU 71 15.536 16.480 34.344 1.00 0.00 C ATOM 183 C LEU 71 16.928 16.355 33.704 1.00 0.00 C ATOM 184 O LEU 71 17.611 15.334 33.931 1.00 0.00 O ATOM 185 N ILE 72 17.351 17.344 32.902 1.00 0.00 N ATOM 186 CA ILE 72 18.727 17.277 32.393 1.00 0.00 C ATOM 187 C ILE 72 19.624 17.084 33.602 1.00 0.00 C ATOM 188 O ILE 72 20.406 16.134 33.646 1.00 0.00 O ATOM 189 N LYS 73 19.460 17.967 34.593 1.00 0.00 N ATOM 190 CA LYS 73 20.285 17.971 35.805 1.00 0.00 C ATOM 191 C LYS 73 20.048 16.729 36.658 1.00 0.00 C ATOM 192 O LYS 73 20.998 16.149 37.205 1.00 0.00 O ATOM 193 N LEU 74 18.782 16.321 36.730 1.00 0.00 N ATOM 194 CA LEU 74 18.361 15.088 37.405 1.00 0.00 C ATOM 195 C LEU 74 19.029 13.845 36.849 1.00 0.00 C ATOM 196 O LEU 74 19.316 12.940 37.606 1.00 0.00 O ATOM 197 N TYR 75 19.268 13.809 35.531 1.00 0.00 N ATOM 198 CA TYR 75 19.954 12.695 34.861 1.00 0.00 C ATOM 199 C TYR 75 21.494 12.844 34.873 1.00 0.00 C ATOM 200 O TYR 75 22.231 11.853 34.782 1.00 0.00 O ATOM 201 N THR 76 21.980 14.077 34.986 1.00 0.00 N ATOM 202 CA THR 76 23.417 14.311 35.058 1.00 0.00 C ATOM 203 C THR 76 24.024 13.927 36.413 1.00 0.00 C ATOM 204 O THR 76 25.112 13.336 36.457 1.00 0.00 O ATOM 205 N LYS 85 23.338 14.250 37.517 1.00 0.00 N ATOM 206 CA LYS 85 23.867 13.931 38.861 1.00 0.00 C ATOM 207 C LYS 85 24.227 12.476 39.051 1.00 0.00 C ATOM 208 O LYS 85 25.356 12.195 39.406 1.00 0.00 O ATOM 209 N ASP 86 23.296 11.548 38.775 1.00 0.00 N ATOM 210 CA ASP 86 23.646 10.167 39.038 1.00 0.00 C ATOM 211 C ASP 86 24.838 9.799 38.188 1.00 0.00 C ATOM 212 O ASP 86 25.702 9.018 38.605 1.00 0.00 O ATOM 213 N LEU 87 24.907 10.424 37.021 1.00 0.00 N ATOM 214 CA LEU 87 25.990 10.184 36.084 1.00 0.00 C ATOM 215 C LEU 87 27.311 10.679 36.659 1.00 0.00 C ATOM 216 O LEU 87 28.358 10.040 36.475 1.00 0.00 O ATOM 217 N ASN 88 27.243 11.811 37.357 1.00 0.00 N ATOM 218 CA ASN 88 28.373 12.306 38.121 1.00 0.00 C ATOM 219 C ASN 88 28.818 11.205 39.059 1.00 0.00 C ATOM 220 O ASN 88 29.858 10.573 38.843 1.00 0.00 O ATOM 221 N ALA 89 27.990 10.955 40.071 1.00 0.00 N ATOM 222 CA ALA 89 28.277 9.997 41.148 1.00 0.00 C ATOM 223 C ALA 89 28.710 8.594 40.686 1.00 0.00 C ATOM 224 O ALA 89 29.459 7.918 41.401 1.00 0.00 O ATOM 225 N PHE 90 28.249 8.169 39.505 1.00 0.00 N ATOM 226 CA PHE 90 28.458 6.784 39.042 1.00 0.00 C ATOM 227 C PHE 90 29.793 6.608 38.319 1.00 0.00 C ATOM 228 O PHE 90 30.422 5.551 38.434 1.00 0.00 O ATOM 229 N TYR 91 30.196 7.627 37.551 1.00 0.00 N ATOM 230 CA TYR 91 31.356 7.513 36.632 1.00 0.00 C ATOM 231 C TYR 91 32.254 8.737 36.612 1.00 0.00 C ATOM 232 O TYR 91 32.945 8.969 35.608 1.00 0.00 O ATOM 233 N GLN 92 32.216 9.547 37.669 1.00 0.00 N ATOM 234 CA GLN 92 32.933 10.824 37.654 1.00 0.00 C ATOM 235 C GLN 92 32.843 11.634 36.348 1.00 0.00 C ATOM 236 O GLN 92 33.771 12.360 36.019 1.00 0.00 O ATOM 237 N SER 93 31.740 11.496 35.609 1.00 0.00 N ATOM 238 CA SER 93 31.485 12.285 34.410 1.00 0.00 C ATOM 239 C SER 93 31.366 13.758 34.790 1.00 0.00 C ATOM 240 O SER 93 30.461 14.111 35.532 1.00 0.00 O ATOM 241 N PRO 94 32.276 14.623 34.272 1.00 0.00 N ATOM 242 CA PRO 94 32.273 16.056 34.614 1.00 0.00 C ATOM 243 C PRO 94 30.876 16.601 34.460 1.00 0.00 C ATOM 244 O PRO 94 30.314 16.526 33.355 1.00 0.00 O ATOM 245 N LEU 95 30.314 17.111 35.558 1.00 0.00 N ATOM 246 CA LEU 95 28.944 17.635 35.565 1.00 0.00 C ATOM 247 C LEU 95 28.496 18.387 34.287 1.00 0.00 C ATOM 248 O LEU 95 27.407 18.137 33.757 1.00 0.00 O ATOM 249 N GLY 96 29.323 19.321 33.816 1.00 0.00 N ATOM 250 CA GLY 96 28.989 20.144 32.642 1.00 0.00 C ATOM 251 C GLY 96 28.852 19.314 31.385 1.00 0.00 C ATOM 252 O GLY 96 28.062 19.624 30.481 1.00 0.00 O ATOM 253 N LYS 97 29.617 18.226 31.353 1.00 0.00 N ATOM 254 CA LYS 97 29.667 17.302 30.205 1.00 0.00 C ATOM 255 C LYS 97 28.409 16.430 30.128 1.00 0.00 C ATOM 256 O LYS 97 27.795 16.300 29.040 1.00 0.00 O ATOM 257 N LYS 98 28.039 15.856 31.281 1.00 0.00 N ATOM 258 CA LYS 98 26.765 15.168 31.446 1.00 0.00 C ATOM 259 C LYS 98 25.653 16.047 30.856 1.00 0.00 C ATOM 260 O LYS 98 25.134 15.732 29.776 1.00 0.00 O ATOM 261 N VAL 99 25.337 17.173 31.501 1.00 0.00 N ATOM 262 CA VAL 99 24.307 18.067 30.966 1.00 0.00 C ATOM 263 C VAL 99 24.350 18.238 29.453 1.00 0.00 C ATOM 264 O VAL 99 23.354 17.998 28.757 1.00 0.00 O ATOM 265 N LEU 100 25.515 18.638 28.955 1.00 0.00 N ATOM 266 CA LEU 100 25.775 18.779 27.532 1.00 0.00 C ATOM 267 C LEU 100 25.172 17.660 26.711 1.00 0.00 C ATOM 268 O LEU 100 24.436 17.913 25.754 1.00 0.00 O ATOM 269 N GLU 101 25.492 16.422 27.064 1.00 0.00 N ATOM 270 CA GLU 101 24.977 15.295 26.284 1.00 0.00 C ATOM 271 C GLU 101 23.446 15.191 26.368 1.00 0.00 C ATOM 272 O GLU 101 22.790 15.268 25.341 1.00 0.00 O ATOM 273 N LYS 102 22.891 15.074 27.580 1.00 0.00 N ATOM 274 CA LYS 102 21.432 15.005 27.813 1.00 0.00 C ATOM 275 C LYS 102 20.629 16.168 27.245 1.00 0.00 C ATOM 276 O LYS 102 19.706 15.967 26.444 1.00 0.00 O ATOM 277 N MET 103 20.969 17.377 27.702 1.00 0.00 N ATOM 278 CA MET 103 20.260 18.592 27.355 1.00 0.00 C ATOM 279 C MET 103 19.333 18.458 26.130 1.00 0.00 C ATOM 280 O MET 103 18.112 18.517 26.293 1.00 0.00 O ATOM 281 N PRO 104 19.884 18.222 24.912 1.00 0.00 N ATOM 282 CA PRO 104 18.991 18.245 23.731 1.00 0.00 C ATOM 283 C PRO 104 18.007 17.088 23.683 1.00 0.00 C ATOM 284 O PRO 104 16.891 17.268 23.202 1.00 0.00 O ATOM 285 N ARG 105 18.407 15.913 24.167 1.00 0.00 N ATOM 286 CA ARG 105 17.489 14.774 24.195 1.00 0.00 C ATOM 287 C ARG 105 16.306 14.995 25.150 1.00 0.00 C ATOM 288 O ARG 105 15.160 14.577 24.856 1.00 0.00 O ATOM 289 N LEU 106 16.598 15.668 26.269 1.00 0.00 N ATOM 290 CA LEU 106 15.606 16.099 27.252 1.00 0.00 C ATOM 291 C LEU 106 14.774 17.225 26.687 1.00 0.00 C ATOM 292 O LEU 106 13.568 17.303 26.947 1.00 0.00 O ATOM 293 N THR 107 15.413 18.098 25.919 1.00 0.00 N ATOM 294 CA THR 107 14.661 19.096 25.161 1.00 0.00 C ATOM 295 C THR 107 13.571 18.498 24.194 1.00 0.00 C ATOM 296 O THR 107 12.449 19.009 24.172 1.00 0.00 O ATOM 297 N ALA 108 13.870 17.433 23.432 1.00 0.00 N ATOM 298 CA ALA 108 12.790 16.746 22.654 1.00 0.00 C ATOM 299 C ALA 108 11.752 16.231 23.607 1.00 0.00 C ATOM 300 O ALA 108 10.583 16.517 23.433 1.00 0.00 O ATOM 301 N GLU 109 12.190 15.503 24.629 1.00 0.00 N ATOM 302 CA GLU 109 11.279 14.983 25.622 1.00 0.00 C ATOM 303 C GLU 109 10.415 16.068 26.225 1.00 0.00 C ATOM 304 O GLU 109 9.318 15.776 26.719 1.00 0.00 O ATOM 305 N SER 110 10.895 17.315 26.206 1.00 0.00 N ATOM 306 CA SER 110 10.127 18.401 26.808 1.00 0.00 C ATOM 307 C SER 110 9.374 19.277 25.831 1.00 0.00 C ATOM 308 O SER 110 8.526 20.057 26.243 1.00 0.00 O ATOM 309 N ALA 111 9.683 19.153 24.543 1.00 0.00 N ATOM 310 CA ALA 111 9.319 20.186 23.569 1.00 0.00 C ATOM 311 C ALA 111 7.862 20.632 23.682 1.00 0.00 C ATOM 312 O ALA 111 7.596 21.821 23.774 1.00 0.00 O ATOM 313 N GLN 112 6.929 19.677 23.730 1.00 0.00 N ATOM 314 CA GLN 112 5.484 20.009 23.759 1.00 0.00 C ATOM 315 C GLN 112 4.993 20.809 24.983 1.00 0.00 C ATOM 316 O GLN 112 3.939 21.446 24.916 1.00 0.00 O ATOM 317 N LEU 113 5.737 20.774 26.086 1.00 0.00 N ATOM 318 CA LEU 113 5.266 21.337 27.351 1.00 0.00 C ATOM 319 C LEU 113 5.912 22.677 27.686 1.00 0.00 C ATOM 320 O LEU 113 6.113 23.006 28.846 1.00 0.00 O ATOM 321 N THR 114 6.234 23.456 26.671 1.00 0.00 N ATOM 322 CA THR 114 7.038 24.631 26.898 1.00 0.00 C ATOM 323 C THR 114 6.517 25.838 26.144 1.00 0.00 C ATOM 324 O THR 114 7.252 26.775 25.890 1.00 0.00 O ATOM 325 N GLN 115 5.251 25.809 25.766 1.00 0.00 N ATOM 326 CA GLN 115 4.633 26.941 25.077 1.00 0.00 C ATOM 327 C GLN 115 5.483 27.544 23.983 1.00 0.00 C ATOM 328 O GLN 115 6.068 26.837 23.162 1.00 0.00 O ATOM 329 N ALA 116 5.567 28.860 23.987 1.00 0.00 N ATOM 330 CA ALA 116 6.379 29.561 23.019 1.00 0.00 C ATOM 331 C ALA 116 7.905 29.407 23.261 1.00 0.00 C ATOM 332 O ALA 116 8.707 29.781 22.388 1.00 0.00 O ATOM 333 N LYS 117 8.299 28.860 24.423 1.00 0.00 N ATOM 334 CA LYS 117 9.667 29.025 24.975 1.00 0.00 C ATOM 335 C LYS 117 10.828 28.775 23.977 1.00 0.00 C ATOM 336 O LYS 117 11.638 29.674 23.719 1.00 0.00 O ATOM 337 N LEU 118 10.902 27.559 23.428 1.00 0.00 N ATOM 338 CA LEU 118 11.986 27.156 22.526 1.00 0.00 C ATOM 339 C LEU 118 12.106 28.106 21.344 1.00 0.00 C ATOM 340 O LEU 118 13.184 28.221 20.757 1.00 0.00 O ATOM 341 N GLN 119 11.013 28.786 20.993 1.00 0.00 N ATOM 342 CA GLN 119 11.057 29.758 19.905 1.00 0.00 C ATOM 343 C GLN 119 12.008 30.923 20.272 1.00 0.00 C ATOM 344 O GLN 119 12.898 31.294 19.479 1.00 0.00 O ATOM 345 N GLY 120 11.861 31.476 21.476 1.00 0.00 N ATOM 346 CA GLY 120 12.823 32.455 21.950 1.00 0.00 C ATOM 347 C GLY 120 14.209 31.806 22.094 1.00 0.00 C ATOM 348 O GLY 120 15.227 32.449 21.803 1.00 0.00 O ATOM 349 N ALA 121 14.256 30.548 22.537 1.00 0.00 N ATOM 350 CA ALA 121 15.547 29.870 22.698 1.00 0.00 C ATOM 351 C ALA 121 16.244 29.773 21.358 1.00 0.00 C ATOM 352 O ALA 121 17.441 30.010 21.283 1.00 0.00 O ATOM 353 N VAL 122 15.496 29.425 20.310 1.00 0.00 N ATOM 354 CA VAL 122 16.050 29.341 18.951 1.00 0.00 C ATOM 355 C VAL 122 16.516 30.722 18.500 1.00 0.00 C ATOM 356 O VAL 122 17.570 30.848 17.877 1.00 0.00 O ATOM 357 N GLU 123 15.740 31.749 18.854 1.00 0.00 N ATOM 358 CA GLU 123 15.997 33.127 18.414 1.00 0.00 C ATOM 359 C GLU 123 17.312 33.595 18.947 1.00 0.00 C ATOM 360 O GLU 123 18.247 33.702 18.195 1.00 0.00 O ATOM 361 N PRO 124 17.379 33.832 20.255 1.00 0.00 N ATOM 362 CA PRO 124 18.588 34.333 20.941 1.00 0.00 C ATOM 363 C PRO 124 19.887 33.515 20.688 1.00 0.00 C ATOM 364 O PRO 124 20.992 33.963 21.023 1.00 0.00 O ATOM 365 N VAL 125 19.741 32.326 20.103 1.00 0.00 N ATOM 366 CA VAL 125 20.880 31.551 19.629 1.00 0.00 C ATOM 367 C VAL 125 21.060 31.662 18.106 1.00 0.00 C ATOM 368 O VAL 125 21.516 30.723 17.458 1.00 0.00 O ATOM 369 N ASN 126 20.679 32.803 17.544 1.00 0.00 N ATOM 370 CA ASN 126 21.045 33.157 16.184 1.00 0.00 C ATOM 371 C ASN 126 20.189 32.596 15.064 1.00 0.00 C ATOM 372 O ASN 126 20.339 33.011 13.905 1.00 0.00 O ATOM 373 N LYS 127 19.298 31.654 15.387 1.00 0.00 N ATOM 374 CA LYS 127 18.411 31.044 14.388 1.00 0.00 C ATOM 375 C LYS 127 17.338 32.030 13.887 1.00 0.00 C ATOM 376 O LYS 127 16.773 32.792 14.658 1.00 0.00 O ATOM 377 N LEU 128 17.093 32.028 12.580 1.00 0.00 N ATOM 378 CA LEU 128 16.038 32.854 11.968 1.00 0.00 C ATOM 379 C LEU 128 14.688 32.169 12.116 1.00 0.00 C ATOM 380 O LEU 128 14.202 31.492 11.228 1.00 0.00 O ATOM 381 N MET 129 14.084 32.356 13.273 1.00 0.00 N ATOM 382 CA MET 129 12.813 31.727 13.578 1.00 0.00 C ATOM 383 C MET 129 11.661 32.355 12.798 1.00 0.00 C ATOM 384 O MET 129 10.587 31.760 12.669 1.00 0.00 O ATOM 385 N ALA 130 11.874 33.566 12.303 1.00 0.00 N ATOM 386 CA ALA 130 10.799 34.277 11.644 1.00 0.00 C ATOM 387 C ALA 130 10.004 33.351 10.662 1.00 0.00 C ATOM 388 O ALA 130 10.599 32.641 9.845 1.00 0.00 O ATOM 389 N ASP 131 8.675 33.325 10.801 1.00 0.00 N ATOM 390 CA ASP 131 7.817 32.441 10.010 1.00 0.00 C ATOM 391 C ASP 131 8.102 30.934 10.053 1.00 0.00 C ATOM 392 O ASP 131 7.874 30.231 9.080 1.00 0.00 O ATOM 393 N MET 132 8.608 30.411 11.158 1.00 0.00 N ATOM 394 CA MET 132 8.610 28.965 11.339 1.00 0.00 C ATOM 395 C MET 132 7.330 28.572 12.073 1.00 0.00 C ATOM 396 O MET 132 6.722 29.404 12.743 1.00 0.00 O ATOM 397 N ASP 133 6.902 27.317 11.951 1.00 0.00 N ATOM 398 CA ASP 133 5.860 26.809 12.847 1.00 0.00 C ATOM 399 C ASP 133 6.478 26.579 14.246 1.00 0.00 C ATOM 400 O ASP 133 7.692 26.382 14.356 1.00 0.00 O ATOM 401 N LYS 134 5.665 26.643 15.304 1.00 0.00 N ATOM 402 CA LYS 134 6.137 26.299 16.649 1.00 0.00 C ATOM 403 C LYS 134 6.864 24.957 16.653 1.00 0.00 C ATOM 404 O LYS 134 7.873 24.791 17.335 1.00 0.00 O ATOM 405 N GLU 135 6.378 24.008 15.863 1.00 0.00 N ATOM 406 CA GLU 135 7.146 22.789 15.642 1.00 0.00 C ATOM 407 C GLU 135 8.514 23.032 14.958 1.00 0.00 C ATOM 408 O GLU 135 9.513 22.406 15.354 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 408 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 64.03 64.0 200 74.6 268 ARMSMC SECONDARY STRUCTURE . . 61.76 65.7 181 77.4 234 ARMSMC SURFACE . . . . . . . . 64.91 61.9 181 78.0 232 ARMSMC BURIED . . . . . . . . 54.91 84.2 19 52.8 36 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 113 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 105 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 100 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 93 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 72 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 85 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 82 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 47 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 44 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 20 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 15.98 (Number of atoms: 102) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 15.98 102 75.6 135 CRMSCA CRN = ALL/NP . . . . . 0.1567 CRMSCA SECONDARY STRUCTURE . . 15.59 92 78.6 117 CRMSCA SURFACE . . . . . . . . 16.04 92 78.6 117 CRMSCA BURIED . . . . . . . . 15.47 10 55.6 18 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 15.98 408 60.7 672 CRMSMC SECONDARY STRUCTURE . . 15.61 368 63.0 584 CRMSMC SURFACE . . . . . . . . 16.06 368 63.0 584 CRMSMC BURIED . . . . . . . . 15.23 40 45.5 88 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 526 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 442 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 471 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 462 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 64 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 15.98 408 38.3 1066 CRMSALL SECONDARY STRUCTURE . . 15.61 368 39.2 939 CRMSALL SURFACE . . . . . . . . 16.06 368 39.6 930 CRMSALL BURIED . . . . . . . . 15.23 40 29.4 136 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.846 1.000 0.500 102 75.6 135 ERRCA SECONDARY STRUCTURE . . 14.438 1.000 0.500 92 78.6 117 ERRCA SURFACE . . . . . . . . 14.923 1.000 0.500 92 78.6 117 ERRCA BURIED . . . . . . . . 14.143 1.000 0.500 10 55.6 18 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.802 1.000 0.500 408 60.7 672 ERRMC SECONDARY STRUCTURE . . 14.411 1.000 0.500 368 63.0 584 ERRMC SURFACE . . . . . . . . 14.906 1.000 0.500 368 63.0 584 ERRMC BURIED . . . . . . . . 13.847 1.000 0.500 40 45.5 88 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 526 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 442 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 471 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 462 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 64 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 14.802 1.000 0.500 408 38.3 1066 ERRALL SECONDARY STRUCTURE . . 14.411 1.000 0.500 368 39.2 939 ERRALL SURFACE . . . . . . . . 14.906 1.000 0.500 368 39.6 930 ERRALL BURIED . . . . . . . . 13.847 1.000 0.500 40 29.4 136 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 4 21 102 135 DISTCA CA (P) 0.00 0.00 0.00 2.96 15.56 135 DISTCA CA (RMS) 0.00 0.00 0.00 4.23 7.34 DISTCA ALL (N) 0 0 0 18 94 408 1066 DISTALL ALL (P) 0.00 0.00 0.00 1.69 8.82 1066 DISTALL ALL (RMS) 0.00 0.00 0.00 3.95 7.58 DISTALL END of the results output