####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 105 ( 420), selected 99 , name T0634AL285_1-D1 # Molecule2: number of CA atoms 107 ( 894), selected 99 , name T0634-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0634AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 3 - 121 2.52 2.52 LCS_AVERAGE: 92.52 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 80 22 - 121 1.99 2.56 LCS_AVERAGE: 64.74 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 26 - 56 0.81 2.61 LONGEST_CONTINUOUS_SEGMENT: 31 27 - 63 0.96 2.60 LCS_AVERAGE: 19.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT L 3 L 3 7 9 99 3 4 7 14 53 67 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 4 K 4 7 9 99 3 6 7 27 68 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 5 K 5 7 9 99 5 6 7 8 53 72 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 6 I 6 7 9 99 5 7 21 37 63 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 7 L 7 7 9 99 5 6 7 8 32 66 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 8 I 8 7 9 99 5 8 24 44 68 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 9 I 9 7 9 99 5 6 10 16 57 72 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 10 D 10 5 9 99 3 3 5 32 53 72 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT Q 11 Q 11 3 16 99 3 3 4 17 55 73 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT Q 12 Q 12 15 16 99 9 13 26 49 65 73 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 13 D 13 15 16 99 10 13 14 21 50 73 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT F 14 F 14 15 16 99 10 13 14 25 47 66 80 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 15 S 15 15 16 99 10 13 14 35 69 74 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT R 16 R 16 15 16 99 10 13 23 36 61 72 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 17 I 17 15 58 99 10 13 14 22 50 73 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 18 E 18 15 58 99 10 13 14 15 15 49 80 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 19 L 19 15 58 99 10 13 24 39 59 73 81 94 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 20 K 20 15 58 99 10 13 14 16 46 67 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 21 N 21 15 58 99 10 13 15 28 55 67 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT F 22 F 22 15 80 99 10 13 14 15 40 51 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 23 L 23 15 80 99 10 13 14 15 50 71 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 24 D 24 15 80 99 8 13 14 15 47 67 81 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 25 S 25 30 80 99 4 9 32 53 64 74 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 26 E 26 31 80 99 4 25 57 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT Y 27 Y 27 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 28 L 28 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT V 29 V 29 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 30 I 30 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 31 E 31 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 32 S 32 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 33 K 33 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 34 N 34 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 35 E 35 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 36 K 36 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 37 E 37 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT A 38 A 38 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 39 L 39 31 80 99 22 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 40 E 40 31 80 99 12 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT Q 41 Q 41 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 42 I 42 31 80 99 22 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 43 D 43 31 80 99 6 43 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT H 44 H 44 31 80 99 15 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT H 45 H 45 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT H 46 H 46 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT P 47 P 47 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 48 D 48 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 49 L 49 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT V 50 V 50 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 51 I 51 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 52 L 52 31 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 53 D 53 31 80 99 20 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT M 54 M 54 31 80 99 6 37 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 55 D 55 31 80 99 3 15 56 67 70 75 82 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 56 I 56 31 80 99 23 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 63 N 63 31 80 99 8 12 37 61 70 75 82 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 64 L 64 15 80 99 8 20 46 66 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT C 65 C 65 15 80 99 8 30 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 66 L 66 15 80 99 13 39 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 67 K 67 15 80 99 8 34 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 68 L 68 15 80 99 8 30 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 69 K 69 9 80 99 12 39 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT R 70 R 70 9 80 99 8 38 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 71 S 71 9 80 99 4 12 44 67 70 75 80 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 75 K 75 9 80 99 4 14 42 59 68 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 76 N 76 9 80 99 4 14 42 59 68 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT V 77 V 77 9 80 99 21 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT P 78 P 78 9 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 79 L 79 9 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 80 I 80 9 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 81 L 81 9 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 82 L 82 9 80 99 21 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT F 83 F 83 9 80 99 21 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 95 L 95 3 80 99 3 4 6 9 13 19 27 39 61 67 82 89 99 99 99 99 99 99 99 99 LCS_GDT H 96 H 96 3 80 99 3 3 3 5 20 28 60 72 82 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 97 S 97 6 80 99 6 17 37 57 70 75 82 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT G 98 G 98 20 80 99 4 28 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT A 99 A 99 23 80 99 13 42 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 100 D 100 23 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 101 D 101 23 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT Y 102 Y 102 23 80 99 5 44 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 103 L 103 23 80 99 10 43 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT T 104 T 104 23 80 99 10 43 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT K 105 K 105 23 80 99 22 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT P 106 P 106 23 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT F 107 F 107 23 80 99 18 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 108 N 108 23 80 99 12 43 57 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT R 109 R 109 23 80 99 10 43 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT N 110 N 110 23 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT D 111 D 111 23 80 99 15 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 112 L 112 23 80 99 12 43 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 113 L 113 23 80 99 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT S 114 S 114 23 80 99 23 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT R 115 R 115 23 80 99 12 36 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 116 I 116 23 80 99 23 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT E 117 E 117 23 80 99 17 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT I 118 I 118 23 80 99 12 40 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT H 119 H 119 23 80 99 11 40 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT L 120 L 120 23 80 99 12 41 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_GDT R 121 R 121 23 80 99 12 27 55 66 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 LCS_AVERAGE LCS_A: 58.77 ( 19.05 64.74 92.52 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 26 45 58 67 70 75 83 95 97 98 98 98 99 99 99 99 99 99 99 99 GDT PERCENT_AT 24.30 42.06 54.21 62.62 65.42 70.09 77.57 88.79 90.65 91.59 91.59 91.59 92.52 92.52 92.52 92.52 92.52 92.52 92.52 92.52 GDT RMS_LOCAL 0.34 0.57 0.81 1.05 1.21 1.41 1.86 2.23 2.28 2.38 2.38 2.38 2.52 2.52 2.52 2.52 2.52 2.52 2.52 2.52 GDT RMS_ALL_AT 2.55 2.59 2.60 2.60 2.59 2.61 2.58 2.54 2.54 2.53 2.53 2.53 2.52 2.52 2.52 2.52 2.52 2.52 2.52 2.52 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA L 3 L 3 3.638 4 0.029 0.029 3.940 45.000 22.500 LGA K 4 K 4 3.739 5 0.182 0.182 4.327 45.119 20.053 LGA K 5 K 5 3.660 5 0.018 0.018 4.891 40.357 17.937 LGA I 6 I 6 3.863 4 0.044 0.044 4.332 45.119 22.560 LGA L 7 L 7 3.856 4 0.017 0.017 4.549 43.690 21.845 LGA I 8 I 8 3.617 4 0.170 0.170 4.806 43.690 21.845 LGA I 9 I 9 3.590 4 0.115 0.115 4.635 43.690 21.845 LGA D 10 D 10 3.546 4 0.595 0.595 3.987 46.667 23.333 LGA Q 11 Q 11 4.046 5 0.563 0.563 4.777 42.262 18.783 LGA Q 12 Q 12 3.812 5 0.594 0.594 3.812 48.333 21.481 LGA D 13 D 13 4.063 4 0.067 0.067 4.063 45.119 22.560 LGA F 14 F 14 4.353 7 0.044 0.044 4.353 45.119 16.407 LGA S 15 S 15 3.852 2 0.024 0.024 3.852 46.667 31.111 LGA R 16 R 16 3.672 7 0.025 0.025 3.672 48.452 17.619 LGA I 17 I 17 3.974 4 0.023 0.023 3.974 46.667 23.333 LGA E 18 E 18 4.302 5 0.047 0.047 4.302 41.905 18.624 LGA L 19 L 19 4.103 4 0.042 0.042 4.103 45.119 22.560 LGA K 20 K 20 3.845 5 0.076 0.076 3.845 50.119 22.275 LGA N 21 N 21 4.091 4 0.057 0.057 4.091 43.452 21.726 LGA F 22 F 22 4.268 7 0.018 0.018 4.268 43.452 15.801 LGA L 23 L 23 3.964 4 0.125 0.125 3.964 46.667 23.333 LGA D 24 D 24 3.957 4 0.047 0.047 4.695 43.810 21.905 LGA S 25 S 25 3.005 2 0.110 0.110 3.005 61.190 40.794 LGA E 26 E 26 2.000 5 0.179 0.179 2.072 75.238 33.439 LGA Y 27 Y 27 0.318 8 0.091 0.091 0.582 97.619 32.540 LGA L 28 L 28 0.423 4 0.025 0.025 0.423 100.000 50.000 LGA V 29 V 29 0.368 3 0.078 0.078 0.445 100.000 57.143 LGA I 30 I 30 0.612 4 0.091 0.091 0.612 95.238 47.619 LGA E 31 E 31 0.569 5 0.059 0.059 0.733 90.476 40.212 LGA S 32 S 32 0.662 2 0.015 0.015 0.667 90.476 60.317 LGA K 33 K 33 0.399 5 0.077 0.077 0.596 95.238 42.328 LGA N 34 N 34 0.501 4 0.074 0.074 0.662 92.857 46.429 LGA E 35 E 35 0.668 5 0.061 0.061 0.769 90.476 40.212 LGA K 36 K 36 1.263 5 0.046 0.046 1.389 81.429 36.190 LGA E 37 E 37 1.097 5 0.056 0.056 1.097 85.952 38.201 LGA A 38 A 38 0.656 1 0.006 0.006 0.845 90.476 72.381 LGA L 39 L 39 1.317 4 0.014 0.014 1.492 81.429 40.714 LGA E 40 E 40 1.584 5 0.117 0.117 1.917 75.000 33.333 LGA Q 41 Q 41 1.039 5 0.029 0.029 1.104 85.952 38.201 LGA I 42 I 42 1.065 4 0.022 0.022 1.447 83.690 41.845 LGA D 43 D 43 1.775 4 0.076 0.076 1.978 75.000 37.500 LGA H 44 H 44 1.516 6 0.389 0.389 1.768 75.000 30.000 LGA H 45 H 45 0.804 6 0.132 0.132 1.120 88.214 35.286 LGA H 46 H 46 0.559 6 0.017 0.017 0.607 95.238 38.095 LGA P 47 P 47 0.287 3 0.032 0.032 0.406 100.000 57.143 LGA D 48 D 48 0.377 4 0.019 0.019 0.442 100.000 50.000 LGA L 49 L 49 0.232 4 0.018 0.018 0.301 100.000 50.000 LGA V 50 V 50 0.310 3 0.011 0.011 0.330 100.000 57.143 LGA I 51 I 51 0.433 4 0.062 0.062 0.433 100.000 50.000 LGA L 52 L 52 0.266 4 0.050 0.050 0.803 95.238 47.619 LGA D 53 D 53 1.049 4 0.026 0.026 1.802 81.548 40.774 LGA M 54 M 54 2.002 4 0.049 0.049 2.774 67.024 33.512 LGA D 55 D 55 2.901 4 0.208 0.208 2.901 64.881 32.440 LGA I 56 I 56 1.003 4 0.082 0.082 1.721 83.810 41.905 LGA N 63 N 63 2.936 4 0.565 0.565 2.936 57.143 28.571 LGA L 64 L 64 2.596 4 0.138 0.138 2.663 60.952 30.476 LGA C 65 C 65 1.749 2 0.039 0.039 2.108 75.119 50.079 LGA L 66 L 66 1.153 4 0.066 0.066 1.372 81.429 40.714 LGA K 67 K 67 2.049 5 0.067 0.067 2.273 66.786 29.683 LGA L 68 L 68 2.228 4 0.021 0.021 2.228 64.762 32.381 LGA K 69 K 69 1.567 5 0.014 0.014 1.734 72.857 32.381 LGA R 70 R 70 1.986 7 0.164 0.164 3.610 61.548 22.381 LGA S 71 S 71 3.484 2 0.654 0.654 3.484 53.571 35.714 LGA K 75 K 75 2.656 5 0.087 0.087 5.169 45.833 20.370 LGA N 76 N 76 2.832 4 0.058 0.058 2.880 60.952 30.476 LGA V 77 V 77 0.276 3 0.117 0.117 1.084 95.357 54.490 LGA P 78 P 78 0.589 3 0.048 0.048 0.589 97.619 55.782 LGA L 79 L 79 0.373 4 0.020 0.020 0.442 100.000 50.000 LGA I 80 I 80 0.245 4 0.046 0.046 0.397 100.000 50.000 LGA L 81 L 81 0.200 4 0.046 0.046 0.742 97.619 48.810 LGA L 82 L 82 0.651 4 0.041 0.041 0.651 97.619 48.810 LGA F 83 F 83 0.660 7 0.088 0.088 1.009 90.595 32.944 LGA L 95 L 95 9.087 4 0.660 0.660 9.087 5.119 2.560 LGA H 96 H 96 7.040 6 0.315 0.315 7.054 13.690 5.476 LGA S 97 S 97 3.464 2 0.690 0.690 3.810 46.667 31.111 LGA G 98 G 98 2.510 0 0.052 0.052 2.547 62.976 62.976 LGA A 99 A 99 1.082 1 0.025 0.025 1.553 83.810 67.048 LGA D 100 D 100 0.599 4 0.037 0.037 0.694 95.238 47.619 LGA D 101 D 101 0.301 4 0.107 0.107 0.436 100.000 50.000 LGA Y 102 Y 102 1.283 8 0.189 0.189 2.091 77.381 25.794 LGA L 103 L 103 1.426 4 0.042 0.042 1.426 81.429 40.714 LGA T 104 T 104 1.368 3 0.078 0.078 1.453 81.429 46.531 LGA K 105 K 105 0.932 5 0.025 0.025 1.064 88.214 39.206 LGA P 106 P 106 0.831 3 0.014 0.014 0.990 90.476 51.701 LGA F 107 F 107 1.354 7 0.025 0.025 1.565 79.286 28.831 LGA N 108 N 108 2.404 4 0.153 0.153 2.404 64.762 32.381 LGA R 109 R 109 1.847 7 0.041 0.041 2.050 75.119 27.316 LGA N 110 N 110 0.860 4 0.054 0.054 1.197 85.952 42.976 LGA D 111 D 111 1.661 4 0.038 0.038 1.687 75.000 37.500 LGA L 112 L 112 1.886 4 0.049 0.049 1.886 77.143 38.571 LGA L 113 L 113 0.794 4 0.032 0.032 1.218 88.214 44.107 LGA S 114 S 114 1.005 2 0.031 0.031 1.314 83.690 55.794 LGA R 115 R 115 1.703 7 0.035 0.035 1.703 75.000 27.273 LGA I 116 I 116 1.037 4 0.011 0.011 1.252 85.952 42.976 LGA E 117 E 117 0.722 5 0.040 0.040 1.294 85.952 38.201 LGA I 118 I 118 1.492 4 0.016 0.016 1.801 77.143 38.571 LGA H 119 H 119 1.496 6 0.046 0.046 1.696 79.286 31.714 LGA L 120 L 120 1.264 4 0.032 0.032 1.557 79.286 39.643 LGA R 121 R 121 1.692 7 0.263 0.263 2.948 66.905 24.329 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 825 396 48.00 107 SUMMARY(RMSD_GDC): 2.521 2.396 2.396 67.047 33.437 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 105 107 4.0 95 2.23 71.495 72.227 4.070 LGA_LOCAL RMSD: 2.234 Number of atoms: 95 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.540 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 2.521 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.313973 * X + -0.769690 * Y + 0.555876 * Z + 16.044357 Y_new = 0.591152 * X + -0.299665 * Y + -0.748826 * Z + 11.168746 Z_new = 0.742940 * X + 0.563718 * Y + 0.360917 * Z + -17.292292 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.082564 -0.837452 1.001310 [DEG: 62.0263 -47.9825 57.3708 ] ZXZ: 0.638575 1.201545 0.921708 [DEG: 36.5876 68.8435 52.8100 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0634AL285_1-D1 REMARK 2: T0634-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0634AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 105 107 4.0 95 2.23 72.227 2.52 REMARK ---------------------------------------------------------- MOLECULE T0634AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3f6pA ATOM 5 N LEU 3 -2.533 -6.094 -2.900 1.00 0.00 N ATOM 6 CA LEU 3 -1.291 -5.365 -2.694 1.00 0.00 C ATOM 7 C LEU 3 -0.509 -6.024 -1.555 1.00 0.00 C ATOM 8 O LEU 3 -1.072 -6.371 -0.509 1.00 0.00 O ATOM 9 N LYS 4 0.789 -6.206 -1.772 1.00 0.00 N ATOM 10 CA LYS 4 1.677 -6.831 -0.794 1.00 0.00 C ATOM 11 C LYS 4 2.377 -5.837 0.127 1.00 0.00 C ATOM 12 O LYS 4 3.075 -4.930 -0.334 1.00 0.00 O ATOM 13 N LYS 5 2.222 -6.040 1.427 1.00 0.00 N ATOM 14 CA LYS 5 2.860 -5.165 2.398 1.00 0.00 C ATOM 15 C LYS 5 3.785 -5.904 3.353 1.00 0.00 C ATOM 16 O LYS 5 3.432 -6.949 3.916 1.00 0.00 O ATOM 17 N ILE 6 4.978 -5.344 3.526 1.00 0.00 N ATOM 18 CA ILE 6 5.973 -5.890 4.425 1.00 0.00 C ATOM 19 C ILE 6 5.998 -5.026 5.672 1.00 0.00 C ATOM 20 O ILE 6 6.284 -3.826 5.604 1.00 0.00 O ATOM 21 N LEU 7 5.667 -5.614 6.813 1.00 0.00 N ATOM 22 CA LEU 7 5.684 -4.885 8.072 1.00 0.00 C ATOM 23 C LEU 7 7.020 -5.227 8.728 1.00 0.00 C ATOM 24 O LEU 7 7.328 -6.398 8.942 1.00 0.00 O ATOM 25 N ILE 8 7.830 -4.216 9.026 1.00 0.00 N ATOM 26 CA ILE 8 9.121 -4.484 9.672 1.00 0.00 C ATOM 27 C ILE 8 9.101 -3.811 11.034 1.00 0.00 C ATOM 28 O ILE 8 9.272 -2.598 11.133 1.00 0.00 O ATOM 29 N ILE 9 8.858 -4.598 12.080 1.00 0.00 N ATOM 30 CA ILE 9 8.784 -4.067 13.430 1.00 0.00 C ATOM 31 C ILE 9 9.108 -5.203 14.397 1.00 0.00 C ATOM 32 O ILE 9 8.670 -6.343 14.196 1.00 0.00 O ATOM 33 N ASP 10 9.876 -4.888 15.433 1.00 0.00 N ATOM 34 CA ASP 10 10.303 -5.877 16.419 1.00 0.00 C ATOM 35 C ASP 10 9.409 -5.909 17.651 1.00 0.00 C ATOM 36 O ASP 10 9.617 -6.709 18.554 1.00 0.00 O ATOM 37 N GLN 11 8.413 -5.037 17.692 1.00 0.00 N ATOM 38 CA GLN 11 7.506 -5.006 18.824 1.00 0.00 C ATOM 39 C GLN 11 6.311 -5.874 18.425 1.00 0.00 C ATOM 40 O GLN 11 5.309 -5.366 17.924 1.00 0.00 O ATOM 41 N GLN 12 6.446 -7.185 18.631 1.00 0.00 N ATOM 42 CA GLN 12 5.405 -8.158 18.297 1.00 0.00 C ATOM 43 C GLN 12 3.972 -7.605 18.398 1.00 0.00 C ATOM 44 O GLN 12 3.180 -7.814 17.496 1.00 0.00 O ATOM 45 N ASP 13 3.629 -6.892 19.497 1.00 0.00 N ATOM 46 CA ASP 13 2.280 -6.315 19.693 1.00 0.00 C ATOM 47 C ASP 13 1.834 -5.335 18.589 1.00 0.00 C ATOM 48 O ASP 13 0.776 -5.493 17.964 1.00 0.00 O ATOM 49 N PHE 14 2.647 -4.312 18.351 1.00 0.00 N ATOM 50 CA PHE 14 2.326 -3.340 17.319 1.00 0.00 C ATOM 51 C PHE 14 2.401 -4.011 15.970 1.00 0.00 C ATOM 52 O PHE 14 1.551 -3.779 15.118 1.00 0.00 O ATOM 53 N SER 15 3.418 -4.835 15.763 1.00 0.00 N ATOM 54 CA SER 15 3.569 -5.523 14.484 1.00 0.00 C ATOM 55 C SER 15 2.347 -6.388 14.171 1.00 0.00 C ATOM 56 O SER 15 1.916 -6.475 13.023 1.00 0.00 O ATOM 57 N ARG 16 1.827 -7.056 15.194 1.00 0.00 N ATOM 58 CA ARG 16 0.678 -7.932 15.009 1.00 0.00 C ATOM 59 C ARG 16 -0.603 -7.136 14.773 1.00 0.00 C ATOM 60 O ARG 16 -1.423 -7.544 13.956 1.00 0.00 O ATOM 61 N ILE 17 -0.775 -6.008 15.458 1.00 0.00 N ATOM 62 CA ILE 17 -1.972 -5.199 15.221 1.00 0.00 C ATOM 63 C ILE 17 -1.930 -4.628 13.783 1.00 0.00 C ATOM 64 O ILE 17 -2.958 -4.571 13.101 1.00 0.00 O ATOM 65 N GLU 18 -0.751 -4.215 13.304 1.00 0.00 N ATOM 66 CA GLU 18 -0.634 -3.724 11.930 1.00 0.00 C ATOM 67 C GLU 18 -1.040 -4.852 10.978 1.00 0.00 C ATOM 68 O GLU 18 -1.790 -4.646 10.024 1.00 0.00 O ATOM 69 N LEU 19 -0.519 -6.054 11.216 1.00 0.00 N ATOM 70 CA LEU 19 -0.856 -7.168 10.345 1.00 0.00 C ATOM 71 C LEU 19 -2.370 -7.454 10.373 1.00 0.00 C ATOM 72 O LEU 19 -2.976 -7.704 9.328 1.00 0.00 O ATOM 73 N LYS 20 -2.963 -7.413 11.561 1.00 0.00 N ATOM 74 CA LYS 20 -4.403 -7.689 11.706 1.00 0.00 C ATOM 75 C LYS 20 -5.255 -6.741 10.876 1.00 0.00 C ATOM 76 O LYS 20 -6.062 -7.176 10.059 1.00 0.00 O ATOM 77 N ASN 21 -5.065 -5.443 11.090 1.00 0.00 N ATOM 78 CA ASN 21 -5.827 -4.433 10.367 1.00 0.00 C ATOM 79 C ASN 21 -5.574 -4.372 8.853 1.00 0.00 C ATOM 80 O ASN 21 -6.531 -4.193 8.080 1.00 0.00 O ATOM 81 N PHE 22 -4.319 -4.544 8.418 1.00 0.00 N ATOM 82 CA PHE 22 -4.005 -4.520 6.987 1.00 0.00 C ATOM 83 C PHE 22 -4.645 -5.738 6.286 1.00 0.00 C ATOM 84 O PHE 22 -5.291 -5.595 5.250 1.00 0.00 O ATOM 85 N LEU 23 -4.485 -6.935 6.847 1.00 0.00 N ATOM 86 CA LEU 23 -5.107 -8.113 6.240 1.00 0.00 C ATOM 87 C LEU 23 -6.623 -7.925 6.197 1.00 0.00 C ATOM 88 O LEU 23 -7.276 -8.289 5.220 1.00 0.00 O ATOM 89 N ASP 24 -7.178 -7.342 7.250 1.00 0.00 N ATOM 90 CA ASP 24 -8.612 -7.115 7.299 1.00 0.00 C ATOM 91 C ASP 24 -9.072 -6.169 6.188 1.00 0.00 C ATOM 92 O ASP 24 -10.199 -6.274 5.696 1.00 0.00 O ATOM 93 N SER 25 -8.206 -5.240 5.801 1.00 0.00 N ATOM 94 CA SER 25 -8.555 -4.292 4.762 1.00 0.00 C ATOM 95 C SER 25 -8.325 -4.943 3.413 1.00 0.00 C ATOM 96 O SER 25 -8.627 -4.359 2.372 1.00 0.00 O ATOM 97 N GLU 26 -7.769 -6.149 3.425 1.00 0.00 N ATOM 98 CA GLU 26 -7.543 -6.858 2.180 1.00 0.00 C ATOM 99 C GLU 26 -6.132 -6.944 1.641 1.00 0.00 C ATOM 100 O GLU 26 -5.929 -7.401 0.513 1.00 0.00 O ATOM 101 N TYR 27 -5.152 -6.508 2.425 1.00 0.00 N ATOM 102 CA TYR 27 -3.762 -6.567 1.989 1.00 0.00 C ATOM 103 C TYR 27 -3.202 -7.928 2.331 1.00 0.00 C ATOM 104 O TYR 27 -3.684 -8.599 3.244 1.00 0.00 O ATOM 105 N LEU 28 -2.197 -8.322 1.572 1.00 0.00 N ATOM 106 CA LEU 28 -1.473 -9.558 1.809 1.00 0.00 C ATOM 107 C LEU 28 -0.301 -9.031 2.628 1.00 0.00 C ATOM 108 O LEU 28 0.486 -8.214 2.133 1.00 0.00 O ATOM 109 N VAL 29 -0.182 -9.492 3.867 1.00 0.00 N ATOM 110 CA VAL 29 0.849 -9.007 4.762 1.00 0.00 C ATOM 111 C VAL 29 1.875 -10.026 5.222 1.00 0.00 C ATOM 112 O VAL 29 1.535 -11.168 5.536 1.00 0.00 O ATOM 113 N ILE 30 3.130 -9.588 5.276 1.00 0.00 N ATOM 114 CA ILE 30 4.247 -10.400 5.746 1.00 0.00 C ATOM 115 C ILE 30 4.954 -9.560 6.811 1.00 0.00 C ATOM 116 O ILE 30 4.942 -8.322 6.742 1.00 0.00 O ATOM 117 N GLU 31 5.545 -10.221 7.805 1.00 0.00 N ATOM 118 CA GLU 31 6.228 -9.521 8.882 1.00 0.00 C ATOM 119 C GLU 31 7.706 -9.932 8.996 1.00 0.00 C ATOM 120 O GLU 31 8.073 -11.091 8.745 1.00 0.00 O ATOM 121 N SER 32 8.554 -8.970 9.355 1.00 0.00 N ATOM 122 CA SER 32 9.994 -9.204 9.538 1.00 0.00 C ATOM 123 C SER 32 10.298 -8.534 10.865 1.00 0.00 C ATOM 124 O SER 32 9.749 -7.478 11.151 1.00 0.00 O ATOM 125 N LYS 33 11.161 -9.132 11.679 1.00 0.00 N ATOM 126 CA LYS 33 11.426 -8.557 12.983 1.00 0.00 C ATOM 127 C LYS 33 12.792 -7.923 13.194 1.00 0.00 C ATOM 128 O LYS 33 13.071 -7.411 14.271 1.00 0.00 O ATOM 129 N ASN 34 13.629 -7.958 12.163 1.00 0.00 N ATOM 130 CA ASN 34 14.958 -7.333 12.218 1.00 0.00 C ATOM 131 C ASN 34 15.411 -7.024 10.797 1.00 0.00 C ATOM 132 O ASN 34 14.982 -7.681 9.854 1.00 0.00 O ATOM 133 N GLU 35 16.271 -6.012 10.652 1.00 0.00 N ATOM 134 CA GLU 35 16.757 -5.594 9.344 1.00 0.00 C ATOM 135 C GLU 35 17.092 -6.665 8.322 1.00 0.00 C ATOM 136 O GLU 35 16.489 -6.730 7.242 1.00 0.00 O ATOM 137 N LYS 36 18.070 -7.498 8.658 1.00 0.00 N ATOM 138 CA LYS 36 18.520 -8.579 7.790 1.00 0.00 C ATOM 139 C LYS 36 17.347 -9.383 7.244 1.00 0.00 C ATOM 140 O LYS 36 17.235 -9.602 6.034 1.00 0.00 O ATOM 141 N GLU 37 16.474 -9.828 8.138 1.00 0.00 N ATOM 142 CA GLU 37 15.302 -10.584 7.715 1.00 0.00 C ATOM 143 C GLU 37 14.492 -9.741 6.720 1.00 0.00 C ATOM 144 O GLU 37 14.035 -10.238 5.689 1.00 0.00 O ATOM 145 N ALA 38 14.344 -8.453 7.021 1.00 0.00 N ATOM 146 CA ALA 38 13.593 -7.543 6.158 1.00 0.00 C ATOM 147 C ALA 38 14.204 -7.404 4.765 1.00 0.00 C ATOM 148 O ALA 38 13.527 -7.638 3.760 1.00 0.00 O ATOM 149 N LEU 39 15.482 -7.036 4.698 1.00 0.00 N ATOM 150 CA LEU 39 16.145 -6.873 3.401 1.00 0.00 C ATOM 151 C LEU 39 16.026 -8.170 2.615 1.00 0.00 C ATOM 152 O LEU 39 15.854 -8.162 1.394 1.00 0.00 O ATOM 153 N GLU 40 16.124 -9.282 3.333 1.00 0.00 N ATOM 154 CA GLU 40 16.010 -10.605 2.744 1.00 0.00 C ATOM 155 C GLU 40 14.637 -10.742 2.095 1.00 0.00 C ATOM 156 O GLU 40 14.521 -10.924 0.879 1.00 0.00 O ATOM 157 N GLN 41 13.598 -10.647 2.921 1.00 0.00 N ATOM 158 CA GLN 41 12.225 -10.758 2.449 1.00 0.00 C ATOM 159 C GLN 41 11.912 -9.757 1.337 1.00 0.00 C ATOM 160 O GLN 41 11.180 -10.075 0.403 1.00 0.00 O ATOM 161 N ILE 42 12.470 -8.553 1.421 1.00 0.00 N ATOM 162 CA ILE 42 12.215 -7.546 0.389 1.00 0.00 C ATOM 163 C ILE 42 12.562 -8.072 -1.002 1.00 0.00 C ATOM 164 O ILE 42 11.783 -7.913 -1.944 1.00 0.00 O ATOM 165 N ASP 43 13.730 -8.695 -1.136 1.00 0.00 N ATOM 166 CA ASP 43 14.140 -9.237 -2.430 1.00 0.00 C ATOM 167 C ASP 43 13.252 -10.387 -2.902 1.00 0.00 C ATOM 168 O ASP 43 12.676 -10.332 -3.993 1.00 0.00 O ATOM 169 N HIS 44 13.142 -11.429 -2.084 1.00 0.00 N ATOM 170 CA HIS 44 12.343 -12.589 -2.453 1.00 0.00 C ATOM 171 C HIS 44 10.866 -12.469 -2.095 1.00 0.00 C ATOM 172 O HIS 44 10.247 -13.428 -1.630 1.00 0.00 O ATOM 173 N HIS 45 10.306 -11.285 -2.328 1.00 0.00 N ATOM 174 CA HIS 45 8.899 -11.023 -2.038 1.00 0.00 C ATOM 175 C HIS 45 8.466 -9.734 -2.737 1.00 0.00 C ATOM 176 O HIS 45 7.317 -9.587 -3.146 1.00 0.00 O ATOM 177 N HIS 46 9.415 -8.815 -2.877 1.00 0.00 N ATOM 178 CA HIS 46 9.193 -7.523 -3.514 1.00 0.00 C ATOM 179 C HIS 46 7.832 -6.923 -3.180 1.00 0.00 C ATOM 180 O HIS 46 6.947 -6.833 -4.033 1.00 0.00 O ATOM 181 N PRO 47 7.654 -6.494 -1.924 1.00 0.00 N ATOM 182 CA PRO 47 6.391 -5.902 -1.483 1.00 0.00 C ATOM 183 C PRO 47 6.096 -4.588 -2.192 1.00 0.00 C ATOM 184 O PRO 47 7.010 -3.899 -2.653 1.00 0.00 O ATOM 185 N ASP 48 4.813 -4.242 -2.282 1.00 0.00 N ATOM 186 CA ASP 48 4.404 -3.006 -2.936 1.00 0.00 C ATOM 187 C ASP 48 4.652 -1.816 -2.004 1.00 0.00 C ATOM 188 O ASP 48 4.735 -0.692 -2.444 1.00 0.00 O ATOM 189 N LEU 49 4.779 -2.084 -0.710 1.00 0.00 N ATOM 190 CA LEU 49 5.044 -1.032 0.270 1.00 0.00 C ATOM 191 C LEU 49 5.588 -1.657 1.532 1.00 0.00 C ATOM 192 O LEU 49 5.202 -2.778 1.903 1.00 0.00 O ATOM 193 N VAL 50 6.491 -0.940 2.192 1.00 0.00 N ATOM 194 CA VAL 50 7.076 -1.407 3.438 1.00 0.00 C ATOM 195 C VAL 50 6.735 -0.441 4.565 1.00 0.00 C ATOM 196 O VAL 50 6.813 0.772 4.372 1.00 0.00 O ATOM 197 N ILE 51 6.317 -0.981 5.716 1.00 0.00 N ATOM 198 CA ILE 51 6.033 -0.197 6.904 1.00 0.00 C ATOM 199 C ILE 51 7.268 -0.529 7.714 1.00 0.00 C ATOM 200 O ILE 51 7.530 -1.697 8.017 1.00 0.00 O ATOM 201 N LEU 52 8.025 0.492 8.078 1.00 0.00 N ATOM 202 CA LEU 52 9.308 0.259 8.729 1.00 0.00 C ATOM 203 C LEU 52 9.564 1.024 9.996 1.00 0.00 C ATOM 204 O LEU 52 9.577 2.245 10.009 1.00 0.00 O ATOM 205 N ASP 53 9.760 0.288 11.079 1.00 0.00 N ATOM 206 CA ASP 53 10.017 0.930 12.353 1.00 0.00 C ATOM 207 C ASP 53 11.403 1.565 12.252 1.00 0.00 C ATOM 208 O ASP 53 12.372 0.919 11.826 1.00 0.00 O ATOM 209 N MET 54 11.490 2.828 12.631 1.00 0.00 N ATOM 210 CA MET 54 12.751 3.544 12.541 1.00 0.00 C ATOM 211 C MET 54 13.702 3.106 13.635 1.00 0.00 C ATOM 212 O MET 54 14.905 3.161 13.453 1.00 0.00 O ATOM 213 N ASP 55 13.164 2.614 14.747 1.00 0.00 N ATOM 214 CA ASP 55 14.002 2.168 15.855 1.00 0.00 C ATOM 215 C ASP 55 14.313 0.669 15.955 1.00 0.00 C ATOM 216 O ASP 55 14.379 0.133 17.053 1.00 0.00 O ATOM 217 N ILE 56 14.511 -0.009 14.827 1.00 0.00 N ATOM 218 CA ILE 56 14.867 -1.435 14.848 1.00 0.00 C ATOM 219 C ILE 56 16.253 -1.580 15.510 1.00 0.00 C ATOM 220 O ILE 56 16.893 -0.569 15.810 1.00 0.00 O ATOM 221 N ILE 57 16.740 -2.824 15.726 1.00 0.00 N ATOM 222 CA ILE 57 18.042 -3.131 16.354 1.00 0.00 C ATOM 223 C ILE 57 19.238 -2.204 16.096 1.00 0.00 C ATOM 224 O ILE 57 20.247 -2.624 15.517 1.00 0.00 O ATOM 225 N GLY 58 19.115 -0.956 16.556 1.00 0.00 N ATOM 226 CA GLY 58 20.139 0.086 16.426 1.00 0.00 C ATOM 227 C GLY 58 20.149 0.881 15.116 1.00 0.00 C ATOM 228 O GLY 58 20.925 0.586 14.199 1.00 0.00 O ATOM 229 N GLU 59 19.289 1.902 15.054 1.00 0.00 N ATOM 230 CA GLU 59 19.173 2.793 13.894 1.00 0.00 C ATOM 231 C GLU 59 18.863 2.033 12.618 1.00 0.00 C ATOM 232 O GLU 59 18.748 2.641 11.552 1.00 0.00 O ATOM 233 N ASN 60 18.737 0.710 12.729 1.00 0.00 N ATOM 234 CA ASN 60 18.500 -0.123 11.565 1.00 0.00 C ATOM 235 C ASN 60 17.389 0.411 10.651 1.00 0.00 C ATOM 236 O ASN 60 17.466 0.231 9.444 1.00 0.00 O ATOM 237 N SER 61 16.381 1.086 11.196 1.00 0.00 N ATOM 238 CA SER 61 15.328 1.619 10.336 1.00 0.00 C ATOM 239 C SER 61 15.915 2.461 9.210 1.00 0.00 C ATOM 240 O SER 61 15.649 2.255 8.020 1.00 0.00 O ATOM 241 N PRO 62 16.724 3.439 9.583 1.00 0.00 N ATOM 242 CA PRO 62 17.373 4.280 8.595 1.00 0.00 C ATOM 243 C PRO 62 18.285 3.419 7.714 1.00 0.00 C ATOM 244 O PRO 62 18.278 3.538 6.489 1.00 0.00 O ATOM 245 N ASN 63 19.048 2.523 8.331 1.00 0.00 N ATOM 246 CA ASN 63 19.945 1.677 7.558 1.00 0.00 C ATOM 247 C ASN 63 19.189 0.703 6.667 1.00 0.00 C ATOM 248 O ASN 63 19.635 0.407 5.562 1.00 0.00 O ATOM 249 N LEU 64 18.045 0.199 7.133 1.00 0.00 N ATOM 250 CA LEU 64 17.271 -0.727 6.313 1.00 0.00 C ATOM 251 C LEU 64 16.771 0.023 5.098 1.00 0.00 C ATOM 252 O LEU 64 16.856 -0.466 3.966 1.00 0.00 O ATOM 253 N CYS 65 16.254 1.221 5.339 1.00 0.00 N ATOM 254 CA CYS 65 15.747 2.068 4.275 1.00 0.00 C ATOM 255 C CYS 65 16.850 2.324 3.241 1.00 0.00 C ATOM 256 O CYS 65 16.647 2.185 2.032 1.00 0.00 O ATOM 257 N LEU 66 18.027 2.701 3.714 1.00 0.00 N ATOM 258 CA LEU 66 19.127 2.962 2.790 1.00 0.00 C ATOM 259 C LEU 66 19.479 1.746 1.936 1.00 0.00 C ATOM 260 O LEU 66 19.605 1.854 0.715 1.00 0.00 O ATOM 261 N LYS 67 19.644 0.588 2.566 1.00 0.00 N ATOM 262 CA LYS 67 19.991 -0.605 1.803 1.00 0.00 C ATOM 263 C LYS 67 18.943 -0.880 0.741 1.00 0.00 C ATOM 264 O LYS 67 19.251 -0.873 -0.448 1.00 0.00 O ATOM 265 N LEU 68 17.700 -1.104 1.165 1.00 0.00 N ATOM 266 CA LEU 68 16.622 -1.375 0.221 1.00 0.00 C ATOM 267 C LEU 68 16.625 -0.399 -0.948 1.00 0.00 C ATOM 268 O LEU 68 16.460 -0.797 -2.100 1.00 0.00 O ATOM 269 N LYS 69 16.809 0.882 -0.657 1.00 0.00 N ATOM 270 CA LYS 69 16.806 1.886 -1.714 1.00 0.00 C ATOM 271 C LYS 69 17.959 1.696 -2.690 1.00 0.00 C ATOM 272 O LYS 69 17.873 2.116 -3.847 1.00 0.00 O ATOM 273 N ARG 70 19.032 1.057 -2.230 1.00 0.00 N ATOM 274 CA ARG 70 20.176 0.809 -3.095 1.00 0.00 C ATOM 275 C ARG 70 19.746 -0.039 -4.281 1.00 0.00 C ATOM 276 O ARG 70 20.472 -0.133 -5.270 1.00 0.00 O ATOM 277 N SER 71 18.565 -0.650 -4.191 1.00 0.00 N ATOM 278 CA SER 71 18.075 -1.493 -5.279 1.00 0.00 C ATOM 279 C SER 71 16.566 -1.489 -5.550 1.00 0.00 C ATOM 280 O SER 71 16.135 -2.007 -6.577 1.00 0.00 O ATOM 281 N LYS 75 15.756 -0.919 -4.659 1.00 0.00 N ATOM 282 CA LYS 75 14.304 -0.924 -4.886 1.00 0.00 C ATOM 283 C LYS 75 13.661 0.445 -4.707 1.00 0.00 C ATOM 284 O LYS 75 14.096 1.235 -3.876 1.00 0.00 O ATOM 285 N ASN 76 12.603 0.700 -5.471 1.00 0.00 N ATOM 286 CA ASN 76 11.899 1.972 -5.417 1.00 0.00 C ATOM 287 C ASN 76 10.482 1.950 -4.821 1.00 0.00 C ATOM 288 O ASN 76 9.758 2.937 -4.953 1.00 0.00 O ATOM 289 N VAL 77 10.086 0.854 -4.171 1.00 0.00 N ATOM 290 CA VAL 77 8.744 0.793 -3.612 1.00 0.00 C ATOM 291 C VAL 77 8.590 1.712 -2.398 1.00 0.00 C ATOM 292 O VAL 77 9.522 1.923 -1.637 1.00 0.00 O ATOM 293 N PRO 78 7.385 2.248 -2.204 1.00 0.00 N ATOM 294 CA PRO 78 7.096 3.148 -1.085 1.00 0.00 C ATOM 295 C PRO 78 7.506 2.558 0.246 1.00 0.00 C ATOM 296 O PRO 78 7.315 1.363 0.488 1.00 0.00 O ATOM 297 N LEU 79 8.093 3.396 1.090 1.00 0.00 N ATOM 298 CA LEU 79 8.502 3.018 2.436 1.00 0.00 C ATOM 299 C LEU 79 7.897 4.041 3.383 1.00 0.00 C ATOM 300 O LEU 79 8.064 5.270 3.191 1.00 0.00 O ATOM 301 N ILE 80 7.175 3.552 4.382 1.00 0.00 N ATOM 302 CA ILE 80 6.587 4.439 5.400 1.00 0.00 C ATOM 303 C ILE 80 7.300 4.133 6.723 1.00 0.00 C ATOM 304 O ILE 80 7.313 2.963 7.175 1.00 0.00 O ATOM 305 N LEU 81 7.917 5.154 7.326 1.00 0.00 N ATOM 306 CA LEU 81 8.619 4.978 8.608 1.00 0.00 C ATOM 307 C LEU 81 7.616 5.071 9.749 1.00 0.00 C ATOM 308 O LEU 81 6.714 5.917 9.718 1.00 0.00 O ATOM 309 N LEU 82 7.758 4.202 10.744 1.00 0.00 N ATOM 310 CA LEU 82 6.881 4.247 11.917 1.00 0.00 C ATOM 311 C LEU 82 7.788 4.890 12.983 1.00 0.00 C ATOM 312 O LEU 82 8.856 4.349 13.289 1.00 0.00 O ATOM 313 N PHE 83 7.358 6.016 13.535 1.00 0.00 N ATOM 314 CA PHE 83 8.140 6.758 14.511 1.00 0.00 C ATOM 315 C PHE 83 7.333 7.179 15.720 1.00 0.00 C ATOM 316 O PHE 83 6.111 7.039 15.735 1.00 0.00 O ATOM 361 N LEU 95 12.432 10.784 5.440 1.00 0.00 N ATOM 362 CA LEU 95 12.148 11.414 4.135 1.00 0.00 C ATOM 363 C LEU 95 13.439 11.920 3.437 1.00 0.00 C ATOM 364 O LEU 95 13.499 12.070 2.197 1.00 0.00 O ATOM 365 N HIS 96 14.464 12.174 4.241 1.00 0.00 N ATOM 366 CA HIS 96 15.755 12.640 3.719 1.00 0.00 C ATOM 367 C HIS 96 16.601 11.528 3.145 1.00 0.00 C ATOM 368 O HIS 96 17.514 11.787 2.353 1.00 0.00 O ATOM 369 N SER 97 16.334 10.286 3.547 1.00 0.00 N ATOM 370 CA SER 97 17.148 9.200 3.050 1.00 0.00 C ATOM 371 C SER 97 16.446 8.153 2.181 1.00 0.00 C ATOM 372 O SER 97 16.940 7.044 2.015 1.00 0.00 O ATOM 373 N GLY 98 15.307 8.524 1.602 1.00 0.00 N ATOM 374 CA GLY 98 14.618 7.605 0.715 1.00 0.00 C ATOM 375 C GLY 98 13.209 7.177 1.100 1.00 0.00 C ATOM 376 O GLY 98 12.461 6.723 0.235 1.00 0.00 O ATOM 377 N ALA 99 12.848 7.277 2.377 1.00 0.00 N ATOM 378 CA ALA 99 11.492 6.880 2.768 1.00 0.00 C ATOM 379 C ALA 99 10.535 7.891 2.172 1.00 0.00 C ATOM 380 O ALA 99 10.899 9.041 1.905 1.00 0.00 O ATOM 381 N ASP 100 9.297 7.464 1.960 1.00 0.00 N ATOM 382 CA ASP 100 8.305 8.314 1.341 1.00 0.00 C ATOM 383 C ASP 100 7.336 8.973 2.285 1.00 0.00 C ATOM 384 O ASP 100 6.650 9.922 1.893 1.00 0.00 O ATOM 385 N ASP 101 7.282 8.496 3.528 1.00 0.00 N ATOM 386 CA ASP 101 6.317 9.044 4.470 1.00 0.00 C ATOM 387 C ASP 101 6.628 8.506 5.867 1.00 0.00 C ATOM 388 O ASP 101 7.536 7.676 6.038 1.00 0.00 O ATOM 389 N TYR 102 5.894 8.998 6.863 1.00 0.00 N ATOM 390 CA TYR 102 6.050 8.502 8.220 1.00 0.00 C ATOM 391 C TYR 102 4.685 8.539 8.885 1.00 0.00 C ATOM 392 O TYR 102 3.791 9.265 8.456 1.00 0.00 O ATOM 393 N LEU 103 4.540 7.730 9.919 1.00 0.00 N ATOM 394 CA LEU 103 3.310 7.656 10.691 1.00 0.00 C ATOM 395 C LEU 103 3.768 7.595 12.136 1.00 0.00 C ATOM 396 O LEU 103 4.674 6.820 12.469 1.00 0.00 O ATOM 397 N THR 104 3.192 8.437 12.980 1.00 0.00 N ATOM 398 CA THR 104 3.585 8.443 14.384 1.00 0.00 C ATOM 399 C THR 104 2.735 7.509 15.255 1.00 0.00 C ATOM 400 O THR 104 1.557 7.249 14.979 1.00 0.00 O ATOM 401 N LYS 105 3.353 7.017 16.321 1.00 0.00 N ATOM 402 CA LYS 105 2.679 6.137 17.254 1.00 0.00 C ATOM 403 C LYS 105 2.283 6.930 18.501 1.00 0.00 C ATOM 404 O LYS 105 3.040 7.770 18.984 1.00 0.00 O ATOM 405 N PRO 106 1.075 6.688 19.027 1.00 0.00 N ATOM 406 CA PRO 106 0.118 5.721 18.491 1.00 0.00 C ATOM 407 C PRO 106 -0.616 6.316 17.298 1.00 0.00 C ATOM 408 O PRO 106 -0.773 7.535 17.197 1.00 0.00 O ATOM 409 N PHE 107 -1.069 5.455 16.401 1.00 0.00 N ATOM 410 CA PHE 107 -1.809 5.905 15.221 1.00 0.00 C ATOM 411 C PHE 107 -3.118 5.133 15.132 1.00 0.00 C ATOM 412 O PHE 107 -3.200 3.984 15.553 1.00 0.00 O ATOM 413 N ASN 108 -4.145 5.764 14.587 1.00 0.00 N ATOM 414 CA ASN 108 -5.419 5.076 14.468 1.00 0.00 C ATOM 415 C ASN 108 -5.383 4.204 13.226 1.00 0.00 C ATOM 416 O ASN 108 -4.573 4.419 12.306 1.00 0.00 O ATOM 417 N ARG 109 -6.283 3.236 13.196 1.00 0.00 N ATOM 418 CA ARG 109 -6.390 2.356 12.064 1.00 0.00 C ATOM 419 C ARG 109 -6.749 3.208 10.844 1.00 0.00 C ATOM 420 O ARG 109 -6.249 2.967 9.758 1.00 0.00 O ATOM 421 N ASN 110 -7.584 4.226 11.038 1.00 0.00 N ATOM 422 CA ASN 110 -7.988 5.102 9.937 1.00 0.00 C ATOM 423 C ASN 110 -6.759 5.793 9.313 1.00 0.00 C ATOM 424 O ASN 110 -6.626 5.887 8.092 1.00 0.00 O ATOM 425 N ASP 111 -5.867 6.283 10.158 1.00 0.00 N ATOM 426 CA ASP 111 -4.671 6.951 9.664 1.00 0.00 C ATOM 427 C ASP 111 -3.771 5.966 8.929 1.00 0.00 C ATOM 428 O ASP 111 -3.284 6.276 7.834 1.00 0.00 O ATOM 429 N LEU 112 -3.545 4.789 9.532 1.00 0.00 N ATOM 430 CA LEU 112 -2.704 3.737 8.935 1.00 0.00 C ATOM 431 C LEU 112 -3.151 3.407 7.507 1.00 0.00 C ATOM 432 O LEU 112 -2.355 3.471 6.561 1.00 0.00 O ATOM 433 N LEU 113 -4.428 3.067 7.357 1.00 0.00 N ATOM 434 CA LEU 113 -4.966 2.683 6.053 1.00 0.00 C ATOM 435 C LEU 113 -4.912 3.809 5.031 1.00 0.00 C ATOM 436 O LEU 113 -4.611 3.563 3.858 1.00 0.00 O ATOM 437 N SER 114 -5.211 5.036 5.467 1.00 0.00 N ATOM 438 CA SER 114 -5.177 6.198 4.588 1.00 0.00 C ATOM 439 C SER 114 -3.753 6.420 4.119 1.00 0.00 C ATOM 440 O SER 114 -3.521 6.678 2.948 1.00 0.00 O ATOM 441 N ARG 115 -2.795 6.320 5.032 1.00 0.00 N ATOM 442 CA ARG 115 -1.391 6.530 4.669 1.00 0.00 C ATOM 443 C ARG 115 -0.883 5.449 3.701 1.00 0.00 C ATOM 444 O ARG 115 -0.137 5.741 2.771 1.00 0.00 O ATOM 445 N ILE 116 -1.260 4.197 3.941 1.00 0.00 N ATOM 446 CA ILE 116 -0.808 3.116 3.092 1.00 0.00 C ATOM 447 C ILE 116 -1.387 3.301 1.686 1.00 0.00 C ATOM 448 O ILE 116 -0.666 3.229 0.696 1.00 0.00 O ATOM 449 N GLU 117 -2.684 3.559 1.593 1.00 0.00 N ATOM 450 CA GLU 117 -3.297 3.757 0.277 1.00 0.00 C ATOM 451 C GLU 117 -2.770 4.993 -0.440 1.00 0.00 C ATOM 452 O GLU 117 -2.439 4.935 -1.638 1.00 0.00 O ATOM 453 N ILE 118 -2.656 6.110 0.276 1.00 0.00 N ATOM 454 CA ILE 118 -2.144 7.330 -0.347 1.00 0.00 C ATOM 455 C ILE 118 -0.742 7.104 -0.899 1.00 0.00 C ATOM 456 O ILE 118 -0.425 7.573 -1.995 1.00 0.00 O ATOM 457 N HIS 119 0.091 6.369 -0.165 1.00 0.00 N ATOM 458 CA HIS 119 1.461 6.128 -0.624 1.00 0.00 C ATOM 459 C HIS 119 1.547 5.108 -1.752 1.00 0.00 C ATOM 460 O HIS 119 2.401 5.229 -2.620 1.00 0.00 O ATOM 461 N LEU 120 0.667 4.117 -1.748 1.00 0.00 N ATOM 462 CA LEU 120 0.663 3.146 -2.849 1.00 0.00 C ATOM 463 C LEU 120 0.256 3.829 -4.159 1.00 0.00 C ATOM 464 O LEU 120 0.710 3.456 -5.225 1.00 0.00 O ATOM 465 N ARG 121 -0.607 4.837 -4.072 1.00 0.00 N ATOM 466 CA ARG 121 -1.103 5.520 -5.255 1.00 0.00 C ATOM 467 C ARG 121 -0.457 6.857 -5.561 1.00 0.00 C ATOM 468 O ARG 121 -0.949 7.585 -6.414 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 39.95 83.6 152 72.7 209 ARMSMC SECONDARY STRUCTURE . . 27.64 89.1 92 70.2 131 ARMSMC SURFACE . . . . . . . . 37.52 86.9 84 69.4 121 ARMSMC BURIED . . . . . . . . 42.77 79.4 68 77.3 88 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 99 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 96 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 62 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 60 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 85 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 56 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 54 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 54 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 19 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 7 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 8 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.52 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.52 99 92.5 107 CRMSCA CRN = ALL/NP . . . . . 0.0255 CRMSCA SECONDARY STRUCTURE . . 2.28 63 94.0 67 CRMSCA SURFACE . . . . . . . . 2.74 58 92.1 63 CRMSCA BURIED . . . . . . . . 2.18 41 93.2 44 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.40 396 74.3 533 CRMSMC SECONDARY STRUCTURE . . 2.15 252 75.2 335 CRMSMC SURFACE . . . . . . . . 2.60 232 73.9 314 CRMSMC BURIED . . . . . . . . 2.07 164 74.9 219 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 466 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 378 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 299 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 297 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 169 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.40 396 44.3 894 CRMSALL SECONDARY STRUCTURE . . 2.15 252 44.4 567 CRMSALL SURFACE . . . . . . . . 2.60 232 42.3 549 CRMSALL BURIED . . . . . . . . 2.07 164 47.5 345 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.973 1.000 0.500 99 92.5 107 ERRCA SECONDARY STRUCTURE . . 1.826 1.000 0.500 63 94.0 67 ERRCA SURFACE . . . . . . . . 2.185 1.000 0.500 58 92.1 63 ERRCA BURIED . . . . . . . . 1.672 1.000 0.500 41 93.2 44 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.896 1.000 0.500 396 74.3 533 ERRMC SECONDARY STRUCTURE . . 1.751 1.000 0.500 252 75.2 335 ERRMC SURFACE . . . . . . . . 2.105 1.000 0.500 232 73.9 314 ERRMC BURIED . . . . . . . . 1.600 1.000 0.500 164 74.9 219 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 466 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 378 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 299 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 297 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 169 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.896 1.000 0.500 396 44.3 894 ERRALL SECONDARY STRUCTURE . . 1.751 1.000 0.500 252 44.4 567 ERRALL SURFACE . . . . . . . . 2.105 1.000 0.500 232 42.3 549 ERRALL BURIED . . . . . . . . 1.600 1.000 0.500 164 47.5 345 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 35 63 70 97 99 99 107 DISTCA CA (P) 32.71 58.88 65.42 90.65 92.52 107 DISTCA CA (RMS) 0.59 1.09 1.29 2.30 2.52 DISTCA ALL (N) 135 250 291 387 396 396 894 DISTALL ALL (P) 15.10 27.96 32.55 43.29 44.30 894 DISTALL ALL (RMS) 0.58 1.09 1.37 2.18 2.40 DISTALL END of the results output